Start: 2024-05-01 21:01:28 GMT [bullseye] Package: chimeraslayer Source: microbiomeutil Version: 20101212+dfsg1-4 Installed-Size: 155 Maintainer: Debian Med Packaging Team Architecture: all Depends: microbiomeutil-data, cdbfasta, ncbi-blast+-legacy Recommends: nast-ier Description: detects likely chimeras in PCR amplified DNA Homepage: http://microbiomeutil.sourceforge.net/ Description-md5: bf434653c4fd71a825161211bb8cbd8e Tag: biology::nucleic-acids, field::biology Section: science Priority: optional Filename: pool/main/m/microbiomeutil/chimeraslayer_20101212+dfsg1-4_all.deb Size: 34060 MD5sum: 6a360b5f6eadcc672e9b0cbefed74e54 SHA256: 2566c3ee1492cda0d34c836b937ceac3970f4fb8bddbc8e83853e894b7d61c60 [bullseye-next] Package: chimeraslayer Source: microbiomeutil Version: 20101212+dfsg1-4 Installed-Size: 155 Maintainer: Debian Med Packaging Team Architecture: all Depends: microbiomeutil-data, cdbfasta, ncbi-blast+-legacy Recommends: nast-ier Description: detects likely chimeras in PCR amplified DNA Homepage: http://microbiomeutil.sourceforge.net/ Description-md5: bf434653c4fd71a825161211bb8cbd8e Tag: biology::nucleic-acids, field::biology Section: science Priority: optional Filename: pool/main/m/microbiomeutil/chimeraslayer_20101212+dfsg1-4_all.deb Size: 34060 MD5sum: 6a360b5f6eadcc672e9b0cbefed74e54 SHA256: 2566c3ee1492cda0d34c836b937ceac3970f4fb8bddbc8e83853e894b7d61c60 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt chimeraslayer=20101212+dfsg1-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt chimeraslayer=20101212+dfsg1-4 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph3g0ev77 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph3g0ev77 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph3g0ev77/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'show', '--no-all-versions', 'chimeraslayer'] 0m4.4s DUMP: Package: chimeraslayer Source: microbiomeutil Version: 20101212+dfsg1-4 Installed-Size: 155 Maintainer: Debian Med Packaging Team Architecture: all Depends: microbiomeutil-data, cdbfasta, ncbi-blast+-legacy Recommends: nast-ier Description-en: detects likely chimeras in PCR amplified DNA ChimeraSlayer is a chimeric sequence detection utility, compatible with near-full length Sanger sequences and shorter 454-FLX sequences (~500bp). . Chimera Slayer involves the following series of steps that operate to flag chimeric 16S rRNA sequences: . 1. the ends of a query sequence are searched against an included database of reference chimera-free 16S sequences to identify potential parents of a chimera 2. candidate parents of a chimera are selected as those that form a branched best scoring alignment to the NAST-formatted query sequence 3. the NAST alignment of the query sequence is improved in a ??chimera-aware?? profile-based NAST realignment to the selected reference parent sequences 4. an evolutionary framework is used to flag query sequences found to exhibit greater sequence homology to an in silico chimera formed between any two of the selected reference parent sequences. . To run Chimera Slayer, you need NAST-formatted sequences generated by the nast-ier utility. . ChimeraSlayer is part of the microbiomeutil suite. Description-md5: bf434653c4fd71a825161211bb8cbd8e Homepage: http://microbiomeutil.sourceforge.net/ Tag: biology::nucleic-acids, field::biology Section: science Priority: optional Filename: pool/main/m/microbiomeutil/chimeraslayer_20101212+dfsg1-4_all.deb Size: 34060 MD5sum: 6a360b5f6eadcc672e9b0cbefed74e54 SHA256: 2566c3ee1492cda0d34c836b937ceac3970f4fb8bddbc8e83853e894b7d61c60 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'show', '--no-all-versions', 'chimeraslayer'] 0m4.4s INFO: apt-cache knows about the following packages: chimeraslayer 0m4.4s INFO: Running scripts pre_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy', 'chimeraslayer'] 0m4.5s DUMP: chimeraslayer: Installed: (none) Candidate: 20101212+dfsg1-4 Version table: 20101212+dfsg1-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy', 'chimeraslayer'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-y', 'install', 'chimeraslayer'] 0m13.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: cdbfasta libexpat1 libgclib2 libgdbm-compat4 libgdbm6 libgomp1 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncursesw6 libperl5.32 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types microbiomeutil-data ncbi-blast+ ncbi-blast+-legacy ncbi-data perl perl-modules-5.32 python3 python3-minimal python3.9 python3.9-minimal readline-common Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: nast-ier libgpm2 ca-certificates netbase The following NEW packages will be installed: cdbfasta chimeraslayer libexpat1 libgclib2 libgdbm-compat4 libgdbm6 libgomp1 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncursesw6 libperl5.32 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types microbiomeutil-data ncbi-blast+ ncbi-blast+-legacy ncbi-data perl perl-modules-5.32 python3 python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 31.1 MB of archives. After this operation, 197 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libgclib2 amd64 0.11.10+ds-2 [145 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 cdbfasta amd64 1.00+git20181005.014498c+dfsg-2 [129 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 microbiomeutil-data all 20101212+dfsg1-4 [1565 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:30 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+-legacy all 2.11.0+ds-1 [13.1 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 chimeraslayer all 20101212+dfsg1-4 [34.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.1 MB in 1s (48.1 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../3-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8939 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... 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Unpacking cdbfasta (1.00+git20181005.014498c+dfsg-2) ... Selecting previously unselected package microbiomeutil-data. Preparing to unpack .../03-microbiomeutil-data_20101212+dfsg1-4_all.deb ... Unpacking microbiomeutil-data (20101212+dfsg1-4) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../04-ncbi-data_6.1.20170106+dfsg1-9_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-9) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../05-libgomp1_10.2.1-6_amd64.deb ... Unpacking libgomp1:amd64 (10.2.1-6) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../06-liblmdb0_0.9.24-1_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.24-1) ... Selecting previously unselected package libmbedcrypto3:amd64. Preparing to unpack .../07-libmbedcrypto3_2.16.9-0.1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.9-0.1) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../08-libmbedx509-0_2.16.9-0.1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.9-0.1) ... Selecting previously unselected package libmbedtls12:amd64. Preparing to unpack .../09-libmbedtls12_2.16.9-0.1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.9-0.1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../10-ncbi-blast+_2.11.0+ds-1_amd64.deb ... Unpacking ncbi-blast+ (2.11.0+ds-1) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../11-ncbi-blast+-legacy_2.11.0+ds-1_all.deb ... Unpacking ncbi-blast+-legacy (2.11.0+ds-1) ... Selecting previously unselected package chimeraslayer. Preparing to unpack .../12-chimeraslayer_20101212+dfsg1-4_all.deb ... Unpacking chimeraslayer (20101212+dfsg1-4) ... Setting up media-types (4.0.0) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libgclib2:amd64 (0.11.10+ds-2) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up cdbfasta (1.00+git20181005.014498c+dfsg-2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up microbiomeutil-data (20101212+dfsg1-4) ... Setting up readline-common (8.1-1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up python3.9 (3.9.2-1) ... Setting up python3 (3.9.2-3) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up ncbi-blast+-legacy (2.11.0+ds-1) ... Setting up chimeraslayer (20101212+dfsg1-4) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-y', 'install', 'chimeraslayer'] 0m13.9s INFO: Running scripts post_install 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_install_exceptions'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m14.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m14.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmph3g0ev77 to bullseye-next 0m14.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m14.6s INFO: Running scripts pre_distupgrade 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'update'] 0m16.4s DUMP: Get:1 http://security.debian.org bullseye-security InRelease [48.4 kB] Hit:2 http://deb.debian.org/debian bullseye InRelease Get:3 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:7 http://security.debian.org bullseye-security/main amd64 Packages [271 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [175 kB] Get:9 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [72.7 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [42.5 kB] Fetched 737 kB in 1s (950 kB/s) Reading package lists... 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'update'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-yf', 'dist-upgrade'] 0m19.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libc-bin libc6 libgnutls30 libmount1 libsmartcols1 libuuid1 mount util-linux 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7116 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://security.debian.org bullseye-security/main amd64 bsdutils amd64 1:2.36.1-8+deb11u2 [149 kB] Get:2 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libgnutls30 amd64 3.7.1-5+deb11u5 [1340 kB] Get:3 http://security.debian.org bullseye-security/main amd64 util-linux amd64 2.36.1-8+deb11u2 [1142 kB] Get:4 http://security.debian.org bullseye-security/main amd64 libc6 amd64 2.31-13+deb11u9 [2824 kB] Get:5 http://security.debian.org bullseye-security/main amd64 libc-bin amd64 2.31-13+deb11u9 [828 kB] Get:6 http://security.debian.org bullseye-security/main amd64 mount amd64 2.36.1-8+deb11u2 [186 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libblkid1 amd64 2.36.1-8+deb11u2 [194 kB] Get:8 http://security.debian.org bullseye-security/main amd64 libmount1 amd64 2.36.1-8+deb11u2 [212 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libsmartcols1 amd64 2.36.1-8+deb11u2 [158 kB] Get:10 http://security.debian.org bullseye-security/main amd64 libuuid1 amd64 2.36.1-8+deb11u2 [83.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7116 kB in 0s (15.1 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u9_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u9) over (2.31-13+deb11u8) ... Setting up libc-bin (2.31-13+deb11u9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-8+deb11u2_amd64.deb ... Unpacking mount (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Preparing to unpack .../libblkid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libblkid1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u5) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.36.1-8+deb11u2) ... Setting up mount (2.36.1-8+deb11u2) ... Processing triggers for libc-bin (2.31-13+deb11u9) ... 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-yf', 'dist-upgrade'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.1s DUMP: aa1d2e7c679551894cd98c50d0e1f8d8 - 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'show', '--no-all-versions', 'chimeraslayer'] 0m20.4s DUMP: Package: chimeraslayer Source: microbiomeutil Version: 20101212+dfsg1-4 Installed-Size: 155 Maintainer: Debian Med Packaging Team Architecture: all Depends: microbiomeutil-data, cdbfasta, ncbi-blast+-legacy Recommends: nast-ier Description-en: detects likely chimeras in PCR amplified DNA ChimeraSlayer is a chimeric sequence detection utility, compatible with near-full length Sanger sequences and shorter 454-FLX sequences (~500bp). . Chimera Slayer involves the following series of steps that operate to flag chimeric 16S rRNA sequences: . 1. the ends of a query sequence are searched against an included database of reference chimera-free 16S sequences to identify potential parents of a chimera 2. candidate parents of a chimera are selected as those that form a branched best scoring alignment to the NAST-formatted query sequence 3. the NAST alignment of the query sequence is improved in a ??chimera-aware?? profile-based NAST realignment to the selected reference parent sequences 4. an evolutionary framework is used to flag query sequences found to exhibit greater sequence homology to an in silico chimera formed between any two of the selected reference parent sequences. . To run Chimera Slayer, you need NAST-formatted sequences generated by the nast-ier utility. . ChimeraSlayer is part of the microbiomeutil suite. Description-md5: bf434653c4fd71a825161211bb8cbd8e Homepage: http://microbiomeutil.sourceforge.net/ Tag: biology::nucleic-acids, field::biology Section: science Priority: optional Filename: pool/main/m/microbiomeutil/chimeraslayer_20101212+dfsg1-4_all.deb Size: 34060 MD5sum: 6a360b5f6eadcc672e9b0cbefed74e54 SHA256: 2566c3ee1492cda0d34c836b937ceac3970f4fb8bddbc8e83853e894b7d61c60 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'show', '--no-all-versions', 'chimeraslayer'] 0m20.4s INFO: apt-cache knows about the following packages: chimeraslayer 0m20.4s INFO: Running scripts pre_install 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_database-server'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_database-server'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_exceptions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_exceptions'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_extras'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_extras'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy'] 0m20.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy', 'chimeraslayer'] 0m20.5s DUMP: chimeraslayer: Installed: 20101212+dfsg1-4 Candidate: 20101212+dfsg1-4 Version table: *** 20101212+dfsg1-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy', 'chimeraslayer'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-y', 'install', 'chimeraslayer'] 0m21.0s DUMP: Reading package lists... Building dependency tree... Reading state information... chimeraslayer is already the newest version (20101212+dfsg1-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-y', 'install', 'chimeraslayer'] 0m21.0s INFO: Running scripts post_install 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_install_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_install_exceptions'] 0m21.0s INFO: Running scripts post_distupgrade 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_distupgrade_zz_backports'] 0m21.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m21.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m21.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m22.5s INFO: Running scripts pre_install 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_database-server'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_database-server'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_exceptions'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_exceptions'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_extras'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_extras'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy'] 0m22.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy', 'chimeraslayer'] 0m22.6s DUMP: chimeraslayer: Installed: 20101212+dfsg1-4 Candidate: 20101212+dfsg1-4 Version table: *** 20101212+dfsg1-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-cache', 'policy', 'chimeraslayer'] 0m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-y', 'install', 'chimeraslayer=20101212+dfsg1-4'] 0m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... chimeraslayer is already the newest version (20101212+dfsg1-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', '-y', 'install', 'chimeraslayer=20101212+dfsg1-4'] 0m23.1s INFO: Running scripts post_install 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_install_exceptions'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_install_exceptions'] 0m23.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m23.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m24.0s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m24.0s INFO: /bin converted to /usr/bin by /usr merge 0m24.0s INFO: /lib converted to /usr/lib by /usr merge 0m24.0s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m24.0s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m24.0s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m24.0s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m24.0s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m24.0s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m24.0s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m24.0s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m24.0s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m24.0s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m24.0s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m24.0s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m24.0s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m24.0s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m24.0s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m24.0s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m24.0s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m24.0s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m24.0s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m24.0s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m24.0s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m24.0s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m24.0s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m24.0s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m24.0s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m24.0s INFO: /sbin converted to /usr/sbin by /usr merge 0m25.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', '-ac', '--ignore-obsolete'] 0m26.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', '-ac', '--ignore-obsolete'] 0m26.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.4s DUMP: 0.15.6 0m26.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.4s INFO: Running adequate version 0.15.6 now. 0m26.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'chimeraslayer'] 0m26.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'chimeraslayer'] 0m26.5s INFO: Running scripts pre_remove 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.6s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed cdbfasta cdbfasta 1.00+git20181005.014498c+dfsg-2 install ok installed chimeraslayer chimeraslayer 20101212+dfsg1-4 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u9 install ok installed libc6:amd64 libc6 2.31-13+deb11u9 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgclib2:amd64 libgclib2 0.11.10+ds-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed microbiomeutil-data microbiomeutil-data 20101212+dfsg1-4 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed python3 python3 3.9.2-3 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'remove', 'cdbfasta', 'libexpat1:amd64', 'libgclib2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'microbiomeutil-data', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'chimeraslayer'] 0m30.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: cdbfasta chimeraslayer libexpat1 libgclib2 libgdbm-compat4 libgdbm6 libgomp1 liblmdb0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libncursesw6 libperl5.32 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 libsqlite3-0 media-types microbiomeutil-data ncbi-blast+ ncbi-blast+-legacy ncbi-data perl perl-modules-5.32 python3 python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 0 newly installed, 31 to remove and 0 not upgraded. After this operation, 197 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9741 files and directories currently installed.) Removing chimeraslayer (20101212+dfsg1-4) ... Removing cdbfasta (1.00+git20181005.014498c+dfsg-2) ... Removing ncbi-blast+-legacy (2.11.0+ds-1) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libgclib2:amd64 (0.11.10+ds-2) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing media-types (4.0.0) ... Removing microbiomeutil-data (20101212+dfsg1-4) ... Removing ncbi-data (6.1.20170106+dfsg1-9) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing readline-common (8.1-1) ... Processing triggers for libc-bin (2.31-13+deb11u9) ... 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'remove', 'cdbfasta', 'libexpat1:amd64', 'libgclib2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'microbiomeutil-data', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'chimeraslayer'] 0m30.0s INFO: Running scripts post_remove 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_remove_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_remove_exceptions'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--purge', 'cdbfasta', 'libexpat1:amd64', 'libgclib2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'microbiomeutil-data', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m30.0s DUMP: dpkg: warning: ignoring request to remove cdbfasta which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgclib2 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 6683 files and directories currently installed.) Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove microbiomeutil-data which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.1-1) ... 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--purge', 'cdbfasta', 'libexpat1:amd64', 'libgclib2:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libperl5.32:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'media-types', 'microbiomeutil-data', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'perl', 'perl-modules-5.32', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--purge', 'chimeraslayer'] 0m30.0s DUMP: dpkg: warning: ignoring request to remove chimeraslayer which isn't installed 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--purge', 'chimeraslayer'] 0m30.0s INFO: Running scripts post_purge 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_purge_exceptions'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_purge_exceptions'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--purge', '--pending'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--purge', '--pending'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--remove', '--pending'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg', '--remove', '--pending'] 0m30.1s INFO: Running scripts post_test 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_test_exceptions'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'tmp/scripts/post_test_exceptions'] 0m30.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m30.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg-divert', '--list'] 0m30.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'dpkg-divert', '--list'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'clean'] 0m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph3g0ev77', 'apt-get', 'clean'] 0m30.7s DEBUG: Recording chroot state 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/shm'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/shm'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/console'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/console'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/ptmx'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/ptmx'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/pts'] 0m32.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/dev/pts'] 0m32.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/proc'] 0m32.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph3g0ev77/proc'] 0m32.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m32.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph3g0ev77'] 0m32.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph3g0ev77 0m32.3s INFO: PASS: Upgrading between Debian distributions. 0m32.3s INFO: PASS: All tests. 0m32.3s INFO: piuparts run ends. ret=0 End: 2024-05-01 21:02:00 GMT