Start: 2023-06-18 18:50:30 GMT Package: metaphlan2-data Version: 2.6.0+ds-4 Installed-Size: 753107 Maintainer: Debian Med Packaging Team Architecture: all Depends: debconf (>= 0.5) | debconf-2.0, bowtie2 Description: data package for Metagenomic Phylogenetic Analysis Homepage: https://bitbucket.org/biobakery/metaphlan2 Description-md5: f0775409e41de9fba49cda4590c73ce4 Section: science Priority: optional Filename: pool/main/m/metaphlan2-data/metaphlan2-data_2.6.0+ds-4_all.deb Size: 204323768 MD5sum: de685246213a02dcedfee6e464f7ac11 SHA256: f38a6e3f49d7b03ba80d9fdd5647b9f9f2dfb38d43b28618053e8ef2c60db7d7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt metaphlan2-data=2.6.0+ds-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt metaphlan2-data=2.6.0+ds-4 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp7lq221lz 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp7lq221lz 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp7lq221lz/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp7lq221lz/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', 'update'] 0m5.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [199 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9511 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6996 kB] Fetched 16.7 MB in 3s (6533 kB/s) Reading package lists... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', 'update'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: dash gcc-13-base libgcc-s1 libstdc++6 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 882 kB of archives. After this operation, 2048 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-5 [92.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.1.0-6 [38.4 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 13.1.0-6 [693 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 13.1.0-6 [57.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 882 kB in 0s (6626 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5416 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-5_amd64.deb ... Unpacking dash (0.5.12-5) over (0.5.12-4) ... Setting up dash (0.5.12-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5416 files and directories currently installed.) Preparing to unpack .../gcc-13-base_13.1.0-6_amd64.deb ... Unpacking gcc-13-base:amd64 (13.1.0-6) over (13.1.0-5) ... Setting up gcc-13-base:amd64 (13.1.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5416 files and directories currently installed.) Preparing to unpack .../libstdc++6_13.1.0-6_amd64.deb ... Unpacking libstdc++6:amd64 (13.1.0-6) over (13.1.0-5) ... Setting up libstdc++6:amd64 (13.1.0-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5416 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.1.0-6_amd64.deb ... Unpacking libgcc-s1:amd64 (13.1.0-6) over (13.1.0-5) ... Setting up libgcc-s1:amd64 (13.1.0-6) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-9) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', '-yf', 'dist-upgrade'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s DUMP: f1687bddb46a5a0d34d37f6913e83c6b - 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s INFO: Running scripts post_setup 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_minimize'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', 'clean'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', 'clean'] 0m7.3s DEBUG: Recording chroot state 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-5 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3 install ok installed debianutils debianutils 5.7-0.4 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-13-base:amd64 gcc-13-base 13.1.0-6 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9 install ok installed libc6:amd64 libc6 2.36-9 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.35-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 13.1.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.2-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.1.0-1 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6 install ok installed libpam-runtime libpam-runtime 1.5.2-6 install ok installed libpam0g:amd64 libpam0g 1.5.2-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 13.1.0-6 install ok installed libsystemd0:amd64 libsystemd0 252.11-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.11-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20230525-1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-6 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'dpkg-divert', '--list'] 0m8.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'dpkg-divert', '--list'] 0m8.0s INFO: Running scripts is_testable 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: apt-cache does not know about any of the requested packages 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 0m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 0m8.9s DEBUG: No broken symlinks as far as we can find. 0m8.9s INFO: Running scripts pre_install 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_database-server'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_exceptions'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_extras'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_log_alternatives'] 0m8.9s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/pre_install_log_alternatives'] 0m8.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 0m9.7s DEBUG: No broken symlinks as far as we can find. 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-cache', 'policy'] 0m10.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-cache', 'policy'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-cache', 'policy', 'metaphlan2-data'] 0m10.3s DUMP: metaphlan2-data: Installed: (none) Candidate: 2.6.0+ds-4 Version table: 2.6.0+ds-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-cache', 'policy', 'metaphlan2-data'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', '-y', 'install', 'metaphlan2-data=2.6.0+ds-4'] 27m22.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: bowtie2 libexpat1 libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libncursesw6 libnsl2 libperl5.36 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3 libtirpc-common libtirpc3 media-types perl perl-modules-5.36 python3 python3-minimal python3.11 python3.11-minimal readline-common Suggested packages: bowtie2-examples gdbm-l10n krb5-doc krb5-user sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binutils binfmt-support readline-doc Recommended packages: krb5-locales libgpm2 netbase ca-certificates The following NEW packages will be installed: bowtie2 libexpat1 libgdbm-compat4 libgdbm6 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libncursesw6 libnsl2 libperl5.36 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsqlite3-0 libssl3 libtirpc-common libtirpc3 media-types metaphlan2-data perl perl-modules-5.36 python3 python3-minimal python3.11 python3.11-minimal readline-common 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 223 MB of archives. After this operation, 859 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-modules-5.36 all 5.36.0-7 [2815 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.36 amd64 5.36.0-7 [4218 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.36.0-7 [239 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.0.9-1 [2016 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.4-1 [815 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2 [99.0 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.4-1 [2060 kB] Get:10 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian sid/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-2 [32.3 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-2 [79.0 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:16 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-2 [331 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-2 [134 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:21 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.4-1 [1803 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.4-1 [579 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:27 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:28 http://deb.debian.org/debian sid/main amd64 bowtie2 amd64 2.5.0-3+b2 [1409 kB] Get:29 http://deb.debian.org/debian sid/main amd64 metaphlan2-data all 2.6.0+ds-4 [204 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 223 MB in 1s (161 MB/s) Selecting previously unselected package perl-modules-5.36. 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Unpacking python3.11-minimal (3.11.4-1) ... Setting up libssl3:amd64 (3.0.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.4-1) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7751 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... 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Setting up media-types (10.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libkrb5support0:amd64 (1.20.1-2) ... Setting up perl-modules-5.36 (5.36.0-7) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2) ... Setting up libkrb5-3:amd64 (1.20.1-2) ... Setting up readline-common (8.2-1.3) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libperl5.36:amd64 (5.36.0-7) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up perl (5.36.0-7) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.4-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.4-1) ... Setting up python3 (3.11.2-1+b1) ... Setting up bowtie2 (2.5.0-3+b2) ... Setting up metaphlan2-data (2.6.0+ds-4) ... Settings: Output files: "/usr/share/metaphlan2/db_v20/mpa_v20_m200.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default Max bucket size, len divisor: 4 Difference-cover sample period: 1024 Endianness: little Actual local endianness: little Sanity checking: disabled Assertions: disabled Random seed: 0 Sizeofs: void*:8, int:4, long:8, size_t:8 Input files DNA, FASTA: /var/lib/metaphlan2-data/markers.fasta Building a SMALL index Reading reference sizes Time reading reference sizes: 00:00:05 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:05 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:11 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:05 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:06 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 7; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 1; iterating... Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 0; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.01651e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 7 Reserving size (133417047) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 73481450 for bucket 1 (Using difference cover) Sorting block time: 00:00:51 Returning block of 73481451 for bucket 1 Getting block 2 of 7 Reserving size (133417047) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 112624089 for bucket 2 (Using difference cover) Sorting block time: 00:01:20 Returning block of 112624090 for bucket 2 Getting block 3 of 7 Reserving size (133417047) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% bucket 3: 20% bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% bucket 3: 70% bucket 3: 80% bucket 3: 90% bucket 3: 100% Sorting block of length 114872559 for bucket 3 (Using difference cover) Sorting block time: 00:01:22 Returning block of 114872560 for bucket 3 Getting block 4 of 7 Reserving size (133417047) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 96915131 for bucket 4 (Using difference cover) Sorting block time: 00:01:10 Returning block of 96915132 for bucket 4 Getting block 5 of 7 Reserving size (133417047) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% bucket 5: 30% bucket 5: 40% bucket 5: 50% bucket 5: 60% bucket 5: 70% bucket 5: 80% bucket 5: 90% bucket 5: 100% Sorting block of length 110535719 for bucket 5 (Using difference cover) Sorting block time: 00:01:21 Returning block of 110535720 for bucket 5 Getting block 6 of 7 Reserving size (133417047) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 79173124 for bucket 6 (Using difference cover) Sorting block time: 00:00:51 Returning block of 79173125 for bucket 6 Getting block 7 of 7 Reserving size (133417047) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 123955509 for bucket 7 (Using difference cover) Sorting block time: 00:01:33 Returning block of 123955510 for bucket 7 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2.tmp Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2.tmp Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 0 Total time for call to driver() for forward index: 00:13:45 Reading reference sizes Time reading reference sizes: 00:00:03 Calculating joined length Writing header Reserving space for joined string Joining reference sequences Time to join reference sequences: 00:00:04 Time to reverse reference sequence: 00:00:02 bmax according to bmaxDivN setting: 177889396 Using parameters --bmax 133417047 --dcv 1024 Doing ahead-of-time memory usage test Passed! Constructing with these parameters: --bmax 133417047 --dcv 1024 Constructing suffix-array element generator Building DifferenceCoverSample Building sPrime Building sPrimeOrder V-Sorting samples V-Sorting samples time: 00:00:12 Allocating rank array Ranking v-sort output Ranking v-sort output time: 00:00:05 Invoking Larsson-Sadakane on ranks Invoking Larsson-Sadakane on ranks time: 00:00:07 Sanity-checking and returning Building samples Reserving space for 12 sample suffixes Generating random suffixes QSorting 12 sample offsets, eliminating duplicates QSorting sample offsets, eliminating duplicates time: 00:00:00 Multikey QSorting 12 samples (Using difference cover) Multikey QSorting samples time: 00:00:00 Calculating bucket sizes Splitting and merging Splitting and merging time: 00:00:00 Split 1, merged 6; iterating... Splitting and merging Splitting and merging time: 00:00:00 Avg bucket size: 1.01651e+08 (target: 133417046) Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 7 Reserving size (133417047) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% bucket 1: 20% bucket 1: 30% bucket 1: 40% bucket 1: 50% bucket 1: 60% bucket 1: 70% bucket 1: 80% bucket 1: 90% bucket 1: 100% Sorting block of length 91718666 for bucket 1 (Using difference cover) Sorting block time: 00:01:05 Returning block of 91718667 for bucket 1 Getting block 2 of 7 Reserving size (133417047) for bucket 2 Calculating Z arrays for bucket 2 Entering block accumulator loop for bucket 2: bucket 2: 10% bucket 2: 20% bucket 2: 30% bucket 2: 40% bucket 2: 50% bucket 2: 60% bucket 2: 70% bucket 2: 80% bucket 2: 90% bucket 2: 100% Sorting block of length 107401525 for bucket 2 (Using difference cover) Sorting block time: 00:01:14 Returning block of 107401526 for bucket 2 Getting block 3 of 7 Reserving size (133417047) for bucket 3 Calculating Z arrays for bucket 3 Entering block accumulator loop for bucket 3: bucket 3: 10% bucket 3: 20% bucket 3: 30% bucket 3: 40% bucket 3: 50% bucket 3: 60% bucket 3: 70% bucket 3: 80% bucket 3: 90% bucket 3: 100% Sorting block of length 113723363 for bucket 3 (Using difference cover) Sorting block time: 00:01:27 Returning block of 113723364 for bucket 3 Getting block 4 of 7 Reserving size (133417047) for bucket 4 Calculating Z arrays for bucket 4 Entering block accumulator loop for bucket 4: bucket 4: 10% bucket 4: 20% bucket 4: 30% bucket 4: 40% bucket 4: 50% bucket 4: 60% bucket 4: 70% bucket 4: 80% bucket 4: 90% bucket 4: 100% Sorting block of length 95758918 for bucket 4 (Using difference cover) Sorting block time: 00:01:13 Returning block of 95758919 for bucket 4 Getting block 5 of 7 Reserving size (133417047) for bucket 5 Calculating Z arrays for bucket 5 Entering block accumulator loop for bucket 5: bucket 5: 10% bucket 5: 20% bucket 5: 30% bucket 5: 40% bucket 5: 50% bucket 5: 60% bucket 5: 70% bucket 5: 80% bucket 5: 90% bucket 5: 100% Sorting block of length 104659734 for bucket 5 (Using difference cover) Sorting block time: 00:01:15 Returning block of 104659735 for bucket 5 Getting block 6 of 7 Reserving size (133417047) for bucket 6 Calculating Z arrays for bucket 6 Entering block accumulator loop for bucket 6: bucket 6: 10% bucket 6: 20% bucket 6: 30% bucket 6: 40% bucket 6: 50% bucket 6: 60% bucket 6: 70% bucket 6: 80% bucket 6: 90% bucket 6: 100% Sorting block of length 116767199 for bucket 6 (Using difference cover) Sorting block time: 00:01:21 Returning block of 116767200 for bucket 6 Getting block 7 of 7 Reserving size (133417047) for bucket 7 Calculating Z arrays for bucket 7 Entering block accumulator loop for bucket 7: bucket 7: 10% bucket 7: 20% bucket 7: 30% bucket 7: 40% bucket 7: 50% bucket 7: 60% bucket 7: 70% bucket 7: 80% bucket 7: 90% bucket 7: 100% Sorting block of length 81528176 for bucket 7 (Using difference cover) Sorting block time: 00:00:59 Returning block of 81528177 for bucket 7 Exited Ebwt loop fchr[A]: 0 fchr[C]: 193247476 fchr[G]: 355349181 fchr[T]: 534730948 fchr[$]: 711557587 Exiting Ebwt::buildToDisk() Returning from initFromVector Wrote 304203219 bytes to primary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2.tmp Wrote 177889404 bytes to secondary EBWT file: /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2.tmp Re-opening _in1 and _in2 as input streams Returning from Ebwt constructor Headers: len: 711557587 bwtLen: 711557588 sz: 177889397 bwtSz: 177889397 lineRate: 6 offRate: 4 offMask: 0xfffffff0 ftabChars: 10 eftabLen: 20 eftabSz: 80 ftabLen: 1048577 ftabSz: 4194308 offsLen: 44472350 offsSz: 177889400 lineSz: 64 sideSz: 64 sideBwtSz: 48 sideBwtLen: 192 numSides: 3706030 numLines: 3706030 ebwtTotLen: 237185920 ebwtTotSz: 237185920 color: 0 reverse: 1 Total time for backward call to driver() for mirror index: 00:13:14 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.3.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.3.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.4.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.4.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.1.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.2.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.1.bt2 Renaming /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2.tmp to /usr/share/metaphlan2/db_v20/mpa_v20_m200.rev.2.bt2 Metaphlan2 data are properly created. Processing triggers for libc-bin (2.36-9) ... 27m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'apt-get', '-y', 'install', 'metaphlan2-data=2.6.0+ds-4'] 27m22.4s INFO: Running scripts post_install 27m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_install_exceptions'] 27m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_install_exceptions'] 27m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_install_log_alternatives'] 27m22.4s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=metaphlan2-data=2.6.0+ds-4: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=perl: piuparts=metaphlan2-data=2.6.0+ds-4: /usr/bin/update-alternatives --remove rename /usr/bin/prename 27m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', 'tmp/scripts/post_install_log_alternatives'] 27m22.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 27m22.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 27m23.5s DEBUG: No broken symlinks as far as we can find. 27m23.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', '-ac', '--ignore-obsolete'] 27m25.3s DUMP: debsums: missing file /srv/piuparts.debian.org/tmp/tmp7lq221lz/var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 27m25.3s DEBUG: Command failed (status=2), but ignoring error: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7lq221lz', '-ac', '--ignore-obsolete'] 27m25.3s ERROR: FAIL: debsums reports modifications inside the chroot: debsums: missing file /var/lib/metaphlan2-data/markers.fasta (from metaphlan2-data package) 27m25.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/shm'] 27m25.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/shm'] 27m25.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/console'] 27m25.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/console'] 27m25.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/ptmx'] 27m25.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/ptmx'] 27m25.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/pts'] 27m25.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/dev/pts'] 27m25.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/proc'] 27m25.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7lq221lz/proc'] 27m25.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 27m26.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7lq221lz'] 27m26.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp7lq221lz 27m26.2s ERROR: piuparts run ends. ret=1 End: 2023-06-18 19:17:56 GMT