Start: 2024-04-23 07:06:42 GMT Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description: DICOM converter with support for structure heuristics Homepage: https://github.com/nipy/heudiconv Description-md5: 1c97e589188a732262069fcb46088fb7 Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt heudiconv=0.11.6-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt heudiconv=0.11.6-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpqgb687fg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpqgb687fg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/shm'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/shm'] 0m0.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpqgb687fg/tmp/scripts/ 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpqgb687fg/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'update'] 0m4.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9896 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7201 kB] Fetched 17.3 MB in 3s (5341 kB/s) Reading package lists... 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'update'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', '-yf', 'dist-upgrade'] 0m7.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2385 kB of archives. After this operation, 31.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.2 [989 kB] Get:2 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.2 [1396 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2385 kB in 0s (23.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.2_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.2) over (2.9.1) ... Setting up libapt-pkg6.0t64:amd64 (2.9.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.2_amd64.deb ... Unpacking apt (2.9.2) over (2.9.1) ... Setting up apt (2.9.2) ... Processing triggers for libc-bin (2.37-18) ... 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', '-yf', 'dist-upgrade'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.7s DUMP: 1070500705ec2b48a3cc59e713484a81 - 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.7s INFO: Running scripts post_setup 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_dummy_users'] 0m9.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_dummy_users'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_forbid_home'] 0m9.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_forbid_home'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_minimize'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_minimize'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_zz_backports'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_setup_zz_backports'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'clean'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'clean'] 0m10.0s DEBUG: Recording chroot state 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.4s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-divert', '--list'] 0m10.4s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-divert', '--list'] 0m10.4s INFO: Running scripts is_testable 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/is_testable_uninstallable'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/is_testable_uninstallable'] 0m10.5s INFO: apt-cache does not know about any of the requested packages 0m10.5s INFO: Running scripts pre_test 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_test_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_test_exceptions'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_test_root_password'] 0m10.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_test_root_password'] 0m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 0m11.2s DEBUG: No broken symlinks as far as we can find. 0m11.2s INFO: Running scripts pre_install 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_database-server'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_database-server'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_exceptions'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_exceptions'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_extras'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_extras'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_log_alternatives'] 0m11.3s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_install_log_alternatives'] 0m11.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 0m11.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 0m12.0s DEBUG: No broken symlinks as far as we can find. 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-cache', 'policy'] 0m13.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-cache', 'policy'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-cache', 'policy', 'heudiconv'] 0m13.2s DUMP: heudiconv: Installed: (none) Candidate: 0.11.6-1 Version table: 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-cache', 'policy', 'heudiconv'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', '-y', 'install', 'heudiconv=0.11.6-1'] 1m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates dcm2niix libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libopenjp2-7 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python-charset-normalizer-doc python-dipy-doc python-funcsigs-doc python-h5py-doc python-jsonpickle-doc python-lxml-doc python-nibabel-doc afni python3-nipy slicer matlab-spm8 python3-pyxnat mne-python elastix ants python3-pytest-xdist python3-bids gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-prov-doc python3-pydot python3-matplotlib python3-gdcm python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-brotli python3.11-venv python3.11-doc binutils binfmt-support readline-doc Recommended packages: pigz python3-pytest python3-datalad javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-clevercsv python3-matplotlib python3-vtk9 python3-tables python3-sklearn python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-fuse ipython3 graphviz python3-xvfbwrapper mayavi2 python3-pydotplus python3-cfflib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-jinja2 python3-numba python3-pil python3-sparqlwrapper g++ | c++-compiler The following NEW packages will be installed: ca-certificates dcm2niix heudiconv libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libopenjp2-7 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal readline-common 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 96.0 MB of archives. After this operation, 423 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240414-1 [135 kB] Get:8 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:14 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:15 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:16 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libturbojpeg0 amd64 1:2.1.5-2+b2 [210 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b1 [132 kB] Get:20 http://deb.debian.org/debian sid/main amd64 dcm2niix amd64 1.0.20220720-1+b1 [245 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-pydicom all 2.4.3-1 [1120 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get:24 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-6 [5472 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:29 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:31 http://deb.debian.org/debian sid/main amd64 python3-nibabel all 5.2.1-1 [2659 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3-dcmstack all 0.9-1 [75.8 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.13.4-1 [10.8 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-ci-info all 0.3.0-1 [7584 B] Get:42 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:45 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-etelemetry all 0.3.1-1 [7244 B] Get:49 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-2 [1425 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-isodate all 0.6.1-2 [24.9 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 6.3.2-1 [395 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-prov all 2.0.0-2 [95.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-traits amd64 6.4.3-1 [4823 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:64 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 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libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get:78 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4 [10.1 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.10.0-1+b3 [1400 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.66.2-2 [90.5 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-jsonpickle all 3.0.3+dfsg-1 [41.9 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get:84 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-deepdiff all 6.7.1-2 [65.6 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-trx-python all 0.2.9-1 [40.2 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-7 [3015 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-dipy-lib amd64 1.9.0-1 [3929 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-dipy all 1.9.0-1 [3474 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-funcsigs all 1.0.2-5 [14.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-nipype all 1.8.6-3 [1849 kB] Get:100 http://deb.debian.org/debian sid/main amd64 heudiconv all 0.11.6-1 [7610 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.0 MB in 8s (11.7 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5205 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5521 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../7-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. 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Unpacking python3-dipy-lib:amd64 (1.9.0-1) ... Selecting previously unselected package python3-dipy. Preparing to unpack .../82-python3-dipy_1.9.0-1_all.deb ... Unpacking python3-dipy (1.9.0-1) ... Selecting previously unselected package python3-funcsigs. Preparing to unpack .../83-python3-funcsigs_1.0.2-5_all.deb ... Unpacking python3-funcsigs (1.0.2-5) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../84-python3-psutil_5.9.8-2_amd64.deb ... Unpacking python3-psutil (5.9.8-2) ... Selecting previously unselected package python3-nipype. Preparing to unpack .../85-python3-nipype_1.8.6-3_all.deb ... Unpacking python3-nipype (1.8.6-3) ... Selecting previously unselected package heudiconv. Preparing to unpack .../86-heudiconv_0.11.6-1_all.deb ... Unpacking heudiconv (0.11.6-1) ... Setting up media-types (10.1.0) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up libyaml-cpp0.8:amd64 (0.8.0+dfsg-6+b1) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... Setting up libgomp1:amd64 (14-20240330-1) ... Setting up libturbojpeg0:amd64 (1:2.1.5-2+b2) ... Setting up libaec0:amd64 (1.1.3-1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:amd64 (3.6-4) ... Setting up libncursesw6:amd64 (6.4+20240414-1) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240330-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.2.1-3) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up dcm2niix (1.0.20220720-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libcurl4t64:amd64 (8.7.1-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up python3 (3.11.8-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-funcsigs (1.0.2-5) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-ci-info (0.3.0-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up python3-rdflib (6.3.2-1) ... Setting up python3-pydicom (2.4.3-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-filelock (3.13.4-1) ... Setting up python3-jsonpickle (3.0.3+dfsg-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-traits (6.4.3-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-tqdm (4.66.2-2) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-networkx (2.8.8-2) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-prov (2.0.0-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-6) ... Setting up python3-deepdiff (6.7.1-2) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Setting up python3-h5py-serial (3.10.0-1+b3) ... Setting up python3-etelemetry (0.3.1-1) ... Setting up python3-dipy-lib:amd64 (1.9.0-1) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Setting up python3-nibabel (5.2.1-1) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-trx-python (0.2.9-1) ... Setting up python3-dipy (1.9.0-1) ... Setting up python3-dcmstack (0.9-1) ... Setting up python3-nipype (1.8.6-3) ... Setting up heudiconv (0.11.6-1) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', '-y', 'install', 'heudiconv=0.11.6-1'] 1m12.7s INFO: Running scripts post_install 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_install_exceptions'] 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_install_exceptions'] 1m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_install_log_alternatives'] 1m12.7s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=heudiconv=0.11.6-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=heudiconv=0.11.6-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=heudiconv=0.11.6-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 1m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_install_log_alternatives'] 1m12.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 1m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 1m16.0s ERROR: WARN: Broken symlinks: /usr/share/doc/python3-traits/examples/tutorials/introduction -> ../../traits/examples/introduction (python3-traits) 1m16.1s INFO: /bin converted to /usr/bin by /usr merge 1m16.1s INFO: /lib converted to /usr/lib by /usr merge 1m16.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m16.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m16.1s INFO: /sbin converted to /usr/sbin by /usr merge 1m17.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', '-ac', '--ignore-obsolete'] 1m19.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', '-ac', '--ignore-obsolete'] 1m19.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m19.6s DUMP: 0.15.6 1m19.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m19.6s INFO: Running adequate version 0.15.6 now. 1m19.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'heudiconv'] 1m19.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'heudiconv'] 1m19.7s INFO: Running scripts pre_remove 1m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_exceptions'] 1m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/pre_remove_exceptions'] 1m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m22.2s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed dcm2niix dcm2niix 1.0.20220720-1+b1 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed heudiconv heudiconv 0.11.6-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.3-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4t64:amd64 libcurl4t64 8.7.1-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgfortran5:amd64 libgfortran5 14-20240330-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240330-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-3.3 install ok installed libhdf5-hl-100t64:amd64 libhdf5-hl-100t64 1.10.10+repack-3.3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-6 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.16+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzf1:amd64 liblzf1 3.6-4 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240414-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.61.0-1+b1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.3-1 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-4.1+b2 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libsz2:amd64 libsz2 1.1.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libturbojpeg0:amd64 libturbojpeg0 1:2.1.5-2+b2 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-cpp0.8:amd64 libyaml-cpp0.8 0.8.0+dfsg-6+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed python3 python3 3.11.8-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-ci-info python3-ci-info 0.3.0-1 install ok installed python3-click python3-click 8.1.7-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-dcmstack python3-dcmstack 0.9-1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-deepdiff python3-deepdiff 6.7.1-2 install ok installed python3-dipy python3-dipy 1.9.0-1 install ok installed python3-dipy-lib:amd64 python3-dipy-lib 1.9.0-1 install ok installed python3-distutils python3-distutils 3.12.3-1 install ok installed python3-etelemetry python3-etelemetry 0.3.1-1 install ok installed python3-filelock python3-filelock 3.13.4-1 install ok installed python3-funcsigs python3-funcsigs 1.0.2-5 install ok installed python3-h5py python3-h5py 3.10.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.10.0-1+b3 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-isodate python3-isodate 0.6.1-2 install ok installed python3-jsonpickle python3-jsonpickle 3.0.3+dfsg-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-1 install ok installed python3-lxml:amd64 python3-lxml 5.2.1-1 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-networkx python3-networkx 2.8.8-2 install ok installed python3-nibabel python3-nibabel 5.2.1-1 install ok installed python3-nipype python3-nipype 1.8.6-3 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-6 install ok installed python3-ordered-set python3-ordered-set 4.1.0-1 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-7 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-7 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-prov python3-prov 2.0.0-2 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pydicom python3-pydicom 2.4.3-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-rdflib python3-rdflib 6.3.2-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-tqdm python3-tqdm 4.66.2-2 install ok installed python3-traits python3-traits 6.4.3-1 install ok installed python3-trx-python python3-trx-python 0.2.9-1 install ok installed python3-typing-extensions python3-typing-extensions 4.10.0-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 1m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'remove', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common', 'heudiconv'] 1m32.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates dcm2niix heudiconv libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libopenjp2-7 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal readline-common 0 upgraded, 0 newly installed, 100 to remove and 0 not upgraded. After this operation, 423 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18338 files and directories currently installed.) Removing heudiconv (0.11.6-1) ... Removing python3-nipype (1.8.6-3) ... Removing python3-etelemetry (0.3.1-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing dcm2niix (1.0.20220720-1+b1) ... Removing python3-dipy (1.9.0-1) ... Removing python3-h5py (3.10.0-1) ... Removing python3-h5py-serial (3.10.0-1+b3) ... Removing libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Removing libsz2:amd64 (1.1.3-1) ... Removing libaec0:amd64 (1.1.3-1) ... Removing python3-dcmstack (0.9-1) ... Removing python3-trx-python (0.2.9-1) ... Removing python3-nibabel (5.2.1-1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-pandas (2.1.4+dfsg-7) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Removing python3-dipy-lib:amd64 (1.9.0-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing libcurl4t64:amd64 (8.7.1-3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing python3-deepdiff (6.7.1-2) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.3-1) ... Removing python3-click (8.1.7-1) ... Removing python3-traits (6.4.3-1) ... Removing python3-tqdm (4.66.2-2) ... Removing python3-jsonpickle (3.0.3+dfsg-1) ... Removing libgomp1:amd64 (14-20240330-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Removing python3-prov (2.0.0-2) ... Removing python3-lxml:amd64 (5.2.1-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libjs-sphinxdoc (7.2.6-6) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libkrb5-3:amd64 (1.20.1-6+b1) ... Removing libk5crypto3:amd64 (1.20.1-6+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-6+b1) ... Removing libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Removing liblzf1:amd64 (3.6-4) ... Removing libnghttp2-14:amd64 (1.61.0-1+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Removing libturbojpeg0:amd64 (1:2.1.5-2+b2) ... Removing libyaml-cpp0.8:amd64 (0.8.0+dfsg-6+b1) ... Removing openssl (3.2.1-3) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-ci-info (0.3.0-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-decorator (5.1.1-5) ... Removing python3-filelock (3.13.4-1) ... Removing python3-funcsigs (1.0.2-5) ... Removing python3-idna (3.6-2) ... Removing python3-rdflib (6.3.2-1) ... Removing python3-isodate (0.6.1-2) ... Removing python3-lib2to3 (3.12.3-1) ... Removing python3-networkx (2.8.8-2) ... Removing python3-ordered-set (4.1.0-1) ... Removing python3-packaging (24.0-1) ... Removing python3-psutil (5.9.8-2) ... Removing python3-pydicom (2.4.3-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-six (1.16.0-6) ... Removing python3-typing-extensions (4.10.0-1) ... Removing python3-tz (2024.1-2) ... Removing python3-numpy (1:1.26.4+ds-6) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libgfortran5:amd64 (14-20240330-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.9-1) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240414-1) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.3-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.37-18) ... 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'remove', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common', 'heudiconv'] 1m32.1s INFO: Running scripts post_remove 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_remove_exceptions'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_remove_exceptions'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--purge', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common'] 1m32.3s DUMP: (Reading database ... 5214 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove dcm2niix which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100t64 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libturbojpeg0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyaml-cpp0.8 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.2.1-3) ... Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-ci-info which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dcmstack which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-deepdiff which isn't installed dpkg: warning: ignoring request to remove python3-dipy which isn't installed dpkg: warning: ignoring request to remove python3-dipy-lib which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-etelemetry which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-funcsigs which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jsonpickle which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-nibabel which isn't installed dpkg: warning: ignoring request to remove python3-nipype which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-ordered-set which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydicom which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traits which isn't installed dpkg: warning: ignoring request to remove python3-trx-python which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... Purging configuration files for readline-common (8.2-4) ... 1m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--purge', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common'] 1m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--purge', 'heudiconv'] 1m32.4s DUMP: dpkg: warning: ignoring request to remove heudiconv which isn't installed 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--purge', 'heudiconv'] 1m32.4s INFO: Running scripts post_purge 1m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_purge_exceptions'] 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_purge_exceptions'] 1m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--purge', '--pending'] 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--purge', '--pending'] 1m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--remove', '--pending'] 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg', '--remove', '--pending'] 1m32.4s INFO: Running scripts post_test 1m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_test_exceptions'] 1m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'tmp/scripts/post_test_exceptions'] 1m32.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 1m32.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 1m33.3s DEBUG: No broken symlinks as far as we can find. 1m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-divert', '--list'] 1m33.3s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 1m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'dpkg-divert', '--list'] 1m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'clean'] 1m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqgb687fg', 'apt-get', 'clean'] 1m33.3s DEBUG: Recording chroot state 1m33.9s INFO: PASS: Installation and purging test. 1m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/shm'] 1m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/shm'] 1m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/console'] 1m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/console'] 1m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/ptmx'] 1m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/ptmx'] 1m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/pts'] 1m34.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/dev/pts'] 1m34.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/proc'] 1m34.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqgb687fg/proc'] 1m34.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 1m34.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqgb687fg'] 1m34.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpqgb687fg 1m34.4s INFO: PASS: All tests. 1m34.4s INFO: piuparts run ends. ret=0 End: 2024-04-23 07:08:17 GMT