Start: 2014-09-18 19:41:40 UTC Package: libshogun8 Priority: optional Section: libs Installed-Size: 2264 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Filename: pool/main/s/shogun/libshogun8_0.9.3-4_amd64.deb Size: 843918 MD5sum: 14e413fe42726906291662d6e6de564a SHA1: c842d087c34cf619d0211a44dd9c853d9c174828 SHA256: 42e126b4c6350148a15a4f8422d873b68fab9a907c2ae2312abe37be1f64897e Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the core library all interfaces are based on. Homepage: http://www.shogun-toolbox.org Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libshogun8=0.9.3-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.59 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libshogun8=0.9.3-4 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.60-1+deb7u3 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpzfu49d 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpzfu49d 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzfu49d', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DUMP: tar: ./proc: time stamp 2014-10-15 13:49:47 is 2311686.425654188 s in the future 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpzfu49d', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'update'] 0m2.0s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'update'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpzfu49d/tmp/scripts/ 0m2.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpzfu49d/tmp/scripts/ 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_experimental'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_experimental'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_forbid_home'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_forbid_home'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (31.5 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'clean'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'clean'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--get-selections', '*'] 0m3.9s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--get-selections', '*'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg-divert', '--list'] 0m3.9s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg-divert', '--list'] 0m3.9s INFO: apt-cache does not know about any of the requested packages 0m3.9s INFO: Running scripts pre_test 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_test_root_password'] 0m3.9s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_test_root_password'] 0m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m4.9s DEBUG: No broken symlinks as far as we can find. 0m4.9s INFO: Running scripts pre_install 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-cache', 'show', 'libshogun8=0.9.3-4'] 0m5.0s DUMP: Package: libshogun8 Priority: optional Section: libs Installed-Size: 2264 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Filename: pool/main/s/shogun/libshogun8_0.9.3-4_amd64.deb Size: 843918 MD5sum: 14e413fe42726906291662d6e6de564a SHA1: c842d087c34cf619d0211a44dd9c853d9c174828 SHA256: 42e126b4c6350148a15a4f8422d873b68fab9a907c2ae2312abe37be1f64897e Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the core library all interfaces are based on. Homepage: http://www.shogun-toolbox.org 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-cache', 'show', 'libshogun8=0.9.3-4'] 0m5.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) 0m5.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpE8DVdx/piuparts-depends-dummy'] 0m5.1s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpE8DVdx/piuparts-depends-dummy.deb'. 0m5.1s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpE8DVdx/piuparts-depends-dummy'] 0m5.1s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpE8DVdx/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpzfu49d/tmp 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.1s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6261 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libatlas3gf-base; however: Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libglpk0 (>= 4.30); however: Package libglpk0 is not installed. piuparts-depends-dummy depends on libhdf5-serial-1.8.4 | libhdf5-1.8.4; however: Package libhdf5-serial-1.8.4 is not installed. Package libhdf5-1.8.4 is not installed. piuparts-depends-dummy depends on liblzo2-2; however: Package liblzo2-2 is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.1s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', '-yf', 'install'] 0m6.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libatlas3gf-base libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 Suggested packages: libblas3gf liblapack3gf libiodbc2-dev libmysqlclient-dev The following NEW packages will be installed: libatlas3gf-base libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 9084 kB of archives. After this operation, 24.7 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libatlas3gf-base amd64 3.8.3-27 [6200 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libgmp3c2 amd64 2:4.3.2+dfsg-1 [313 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libltdl7 amd64 2.2.6b-2 [296 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libglpk0 amd64 4.43-1 [446 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-serial-1.8.4 amd64 1.8.4-patch1-2 [1479 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main liblzo2-2 amd64 2.03-2 [59.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9084 kB in 0s (18.8 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6261 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libatlas3gf-base. Unpacking libatlas3gf-base (from .../libatlas3gf-base_3.8.3-27_amd64.deb) ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.3.2+dfsg-1_amd64.deb) ... Selecting previously deselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.2.6b-2_amd64.deb) ... Selecting previously deselected package libglpk0. Unpacking libglpk0 (from .../libglpk0_4.43-1_amd64.deb) ... Selecting previously deselected package libhdf5-serial-1.8.4. Unpacking libhdf5-serial-1.8.4 (from .../libhdf5-serial-1.8.4_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package liblzo2-2. Unpacking liblzo2-2 (from .../liblzo2-2_2.03-2_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libatlas3gf-base (3.8.3-27) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libgmp3c2 (2:4.3.2+dfsg-1) ... Setting up libltdl7 (2.2.6b-2) ... Setting up libglpk0 (4.43-1) ... Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-2) ... Setting up liblzo2-2 (2.03-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', '-yf', 'install'] 0m6.5s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m6.5s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpzfu49d/tmp/piuparts-depends-dummy.deb 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.6s DUMP: piuparts-depends-dummy install ok installed 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.6s DUMP: (Reading database ... 6355 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'clean'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'clean'] 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m8.1s DEBUG: No broken symlinks as far as we can find. 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-cache', 'policy'] 0m8.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-cache', 'policy'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-cache', 'policy', 'libshogun8'] 0m8.2s DUMP: libshogun8: Installed: (none) Candidate: 0.9.3-4 Version table: 0.9.3-4 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-cache', 'policy', 'libshogun8'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', '-y', 'install', 'libshogun8=0.9.3-4'] 0m9.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libshogun8 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 kB of archives. After this operation, 2318 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libshogun8 amd64 0.9.3-4 [844 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 kB in 0s (10.4 MB/s) Selecting previously deselected package libshogun8. (Reading database ... 6355 files and directories currently installed.) Unpacking libshogun8 (from .../libshogun8_0.9.3-4_amd64.deb) ... Setting up libshogun8 (0.9.3-4) ... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', '-y', 'install', 'libshogun8=0.9.3-4'] 0m9.1s INFO: Running scripts post_install 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_install_exceptions'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--get-selections', '*'] 0m10.4s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libatlas3gf-base install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install libglpk0 install libgmp3c2 install libhdf5-serial-1.8.4 install liblocale-gettext-perl install libltdl7 install liblzma2 install liblzo2-2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libshogun8 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--get-selections', '*'] 0m10.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzfu49d', '-ac'] 0m11.6s DUMP: debsums: no md5sums for mawk 0m11.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpzfu49d', '-ac'] 0m11.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.6s DUMP: 0.12~bpo70+1 0m11.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.6s INFO: Running adequate version 0.12~bpo70+1 now. 0m11.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'libshogun8'] 0m11.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'libshogun8'] 0m11.7s INFO: Running scripts pre_remove 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/pre_remove_exceptions'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'remove', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libgfortran3', 'libglpk0', 'libshogun8'] 0m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libatlas3gf-base libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libshogun8 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 27.0 MB disk space will be freed. (Reading database ... 6362 files and directories currently installed.) Removing libshogun8 ... Removing libatlas3gf-base ... Removing libhdf5-serial-1.8.4 ... Removing libgfortran3 ... Removing libglpk0 ... Removing libgmp3c2 ... Removing libltdl7 ... Removing liblzo2-2 ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'remove', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libgfortran3', 'libglpk0', 'libshogun8'] 0m12.4s INFO: Running scripts post_remove 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_remove_extras'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_remove_extras'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libgfortran3', 'libglpk0'] 0m12.5s DUMP: (Reading database ... 6261 files and directories currently installed.) Removing libltdl7 ... Purging configuration files for libltdl7 ... Removing libgmp3c2 ... Purging configuration files for libgmp3c2 ... Removing libhdf5-serial-1.8.4 ... Purging configuration files for libhdf5-serial-1.8.4 ... Removing liblzo2-2 ... Purging configuration files for liblzo2-2 ... Removing libatlas3gf-base ... Purging configuration files for libatlas3gf-base ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libglpk0 ... Purging configuration files for libglpk0 ... 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libgfortran3', 'libglpk0'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', 'libshogun8'] 0m12.5s DUMP: (Reading database ... 6261 files and directories currently installed.) Removing libshogun8 ... Purging configuration files for libshogun8 ... 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', 'libshogun8'] 0m12.5s INFO: Running scripts post_purge 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_purge_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'tmp/scripts/post_purge_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', '--pending'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--purge', '--pending'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--remove', '--pending'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg', '--remove', '--pending'] 0m12.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m13.6s DEBUG: No broken symlinks as far as we can find. 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg-divert', '--list'] 0m13.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'dpkg-divert', '--list'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'clean'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'apt-get', 'clean'] 0m14.6s INFO: PASS: Installation and purging test. 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'umount', '/proc'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpzfu49d', 'umount', '/proc'] 0m14.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m15.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpzfu49d'] 0m15.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpzfu49d 0m15.0s INFO: PASS: All tests. 0m15.0s INFO: piuparts run ends. ret=0 End: 2014-09-18 19:41:55 UTC