Start: 2014-02-20 09:48:31 UTC Package: shogun-python-modular Priority: optional Section: science Installed-Size: 14056 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libpython2.6 (>= 2.6), libshogun8 (= 0.9.3-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python (<< 2.7), python (>= 2.6), python-numpy (<< 1:1.5), python-numpy (>= 1:1.4.1), python-support (>= 0.90.0) Recommends: python-matplotlib, python-scipy Filename: pool/main/s/shogun/shogun-python-modular_0.9.3-4_amd64.deb Size: 3196968 MD5sum: a885a1b51b02f829756fdc1898be6ba8 SHA1: dbb3b2ddfe87ce1df7d8a2599822c83bfd0d9417 SHA256: 59a8f9248a34a8a027e983d4039db7a8cb0f265b8b1bc7ba76bf0bad8b213f0a Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the modular Python package employing swig. Homepage: http://www.shogun-toolbox.org Tag: biology::nuceleic-acids, devel::lang:python, devel::library, field::{biology,biology:bioinformatics,mathematics,statistics}, implemented-in::c++, implemented-in::python, role::devel-lib, use::analysing, use::learning Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt shogun-python-modular=0.9.3-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201402172317~0.57-12-g4a108e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt shogun-python-modular=0.9.3-4 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp3DYQ5i 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp3DYQ5i 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.9s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'update'] 0m4.0s DUMP: Get:1 http://mirror.bm.debian.org squeeze Release.gpg [1672 B] Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Get:2 http://mirror.bm.debian.org squeeze Release [96.0 kB] Get:3 http://mirror.bm.debian.org squeeze/main amd64 Packages [8388 kB] Fetched 8486 kB in 1s (6248 kB/s) Reading package lists... 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'update'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', '-yf', 'dist-upgrade'] 0m6.0s DUMP: Reading package lists... Building dependency tree... The following packages will be upgraded: base-files gnupg gpgv tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3067 kB of archives. After this operation, 52.2 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main base-files amd64 6.0squeeze9 [76.1 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main gpgv amd64 1.4.10-4+squeeze4 [222 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main gnupg amd64 1.4.10-4+squeeze4 [2148 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main tzdata all 2013i-0squeeze1 [621 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3067 kB in 1s (2916 kB/s) (Reading database ... 6155 files and directories currently installed.) Preparing to replace base-files 6.0squeeze8 (using .../base-files_6.0squeeze9_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.0squeeze9) ... Installing new version of config file /etc/debian_version ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze3 (using .../gpgv_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze3 (using .../gnupg_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace tzdata 2013d-0squeeze1 (using .../tzdata_2013i-0squeeze1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2013i-0squeeze1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Feb 20 09:48:37 UTC 2014. Universal Time is now: Thu Feb 20 09:48:37 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', '-yf', 'dist-upgrade'] 0m6.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp3DYQ5i/tmp/scripts/ 0m6.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmp3DYQ5i/tmp/scripts/ 0m6.0s INFO: Running scripts post_setup 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_experimental'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_experimental'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_forbid_home'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_forbid_home'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m9.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 2s (139 kB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'clean'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'clean'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--get-selections', '*'] 0m9.7s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--get-selections', '*'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg-divert', '--list'] 0m9.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg-divert', '--list'] 0m9.7s INFO: apt-cache does not know about any of the requested packages 0m9.7s INFO: Running scripts pre_test 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_test_root_password'] 0m9.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_test_root_password'] 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m10.7s DEBUG: No broken symlinks as far as we can find. 0m10.7s INFO: Running scripts pre_install 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_database-server'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_database-server'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-cache', 'show', 'shogun-python-modular=0.9.3-4'] 0m10.8s DUMP: Package: shogun-python-modular Priority: optional Section: science Installed-Size: 14056 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libpython2.6 (>= 2.6), libshogun8 (= 0.9.3-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python (<< 2.7), python (>= 2.6), python-numpy (<< 1:1.5), python-numpy (>= 1:1.4.1), python-support (>= 0.90.0) Recommends: python-matplotlib, python-scipy Filename: pool/main/s/shogun/shogun-python-modular_0.9.3-4_amd64.deb Size: 3196968 MD5sum: a885a1b51b02f829756fdc1898be6ba8 SHA1: dbb3b2ddfe87ce1df7d8a2599822c83bfd0d9417 SHA256: 59a8f9248a34a8a027e983d4039db7a8cb0f265b8b1bc7ba76bf0bad8b213f0a Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the modular Python package employing swig. Homepage: http://www.shogun-toolbox.org Tag: biology::nuceleic-acids, devel::lang:python, devel::library, field::{biology,biology:bioinformatics,mathematics,statistics}, implemented-in::c++, implemented-in::python, role::devel-lib, use::analysing, use::learning 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-cache', 'show', 'shogun-python-modular=0.9.3-4'] 0m10.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libpython2.6 (>= 2.6), libshogun8 (= 0.9.3-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python (<< 2.7), python (>= 2.6), python-numpy (<< 1:1.5), python-numpy (>= 1:1.4.1), python-support (>= 0.90.0) 0m10.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmposCcaA/piuparts-depends-dummy'] 0m10.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmposCcaA/piuparts-depends-dummy.deb'. 0m10.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmposCcaA/piuparts-depends-dummy'] 0m10.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmposCcaA/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp3DYQ5i/tmp 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m10.9s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libatlas3gf-base; however: Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libglpk0 (>= 4.30); however: Package libglpk0 is not installed. piuparts-depends-dummy depends on libhdf5-serial-1.8.4 | libhdf5-1.8.4; however: Package libhdf5-serial-1.8.4 is not installed. Package libhdf5-1.8.4 is not installed. piuparts-depends-dummy depends on liblzo2-2; however: Package liblzo2-2 is not installed. piuparts-depends-dummy depends on libpython2.6 (>= 2.6); however: Package libpython2.6 is not installed. piuparts-depends-dummy depends on libshogun8 (= 0.9.3-4); however: Package libshogun8 is not installed. piuparts-depends-dummy depends on python (<< 2.7); however: Package python is not installed. piuparts-depends-dummy depends on python (>= 2.6); however: Package python is not installed. piuparts-depends-dummy depends on python-numpy (<< 1:1.5); however: Package python-numpy is not installed. piuparts-depends-dummy depends on python-numpy (>= 1:1.4.1); however: Package python-numpy is not installed. piuparts-depends-dummy depends on python-support (>= 0.90.0); however: Package python-support is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m10.9s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', '-yf', 'install'] 0m25.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libatlas3gf-base libexpat1 libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libncursesw5 libpython2.6 libshogun8 libsqlite3-0 libssl0.9.8 mime-support python python-minimal python-numpy python-support python2.6 python2.6-minimal Suggested packages: libblas3gf liblapack3gf libiodbc2-dev libmysqlclient-dev python-doc python-tk python-profiler python-numpy-doc python-numpy-dbg python-nose python-dev gfortran python2.6-doc python2.6-profiler binutils binfmt-support Recommended packages: libgpm2 file The following NEW packages will be installed: libatlas3gf-base libexpat1 libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libncursesw5 libpython2.6 libshogun8 libsqlite3-0 libssl0.9.8 mime-support python python-minimal python-numpy python-support python2.6 python2.6-minimal 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 19.3 MB of archives. After this operation, 59.2 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libatlas3gf-base amd64 3.8.3-27 [6200 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libgmp3c2 amd64 2:4.3.2+dfsg-1 [313 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libltdl7 amd64 2.2.6b-2 [296 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libglpk0 amd64 4.43-1 [446 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-serial-1.8.4 amd64 1.8.4-patch1-2 [1479 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main liblzo2-2 amd64 2.03-2 [59.6 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libssl0.9.8 amd64 0.9.8o-4squeeze14 [1002 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main python2.6-minimal amd64 2.6.6-8+b1 [1520 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main mime-support all 3.48-1 [34.2 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libexpat1 amd64 2.0.1-7+squeeze1 [138 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libncursesw5 amd64 5.7+20100313-5 [390 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main libsqlite3-0 amd64 3.7.3-1 [397 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main python2.6 amd64 2.6.6-8+b1 [2455 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main libpython2.6 amd64 2.6.6-8+b1 [1077 kB] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main libshogun8 amd64 0.9.3-4 [844 kB] Get:17 http://mirror.bm.debian.org/debian/ squeeze/main python-minimal all 2.6.6-3+squeeze7 [33.8 kB] Get:18 http://mirror.bm.debian.org/debian/ squeeze/main python all 2.6.6-3+squeeze7 [169 kB] Get:19 http://mirror.bm.debian.org/debian/ squeeze/main python-support all 1.0.10 [33.0 kB] Get:20 http://mirror.bm.debian.org/debian/ squeeze/main python-numpy amd64 1:1.4.1-5 [2080 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.3 MB in 9s (2098 kB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6258 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libatlas3gf-base. Unpacking libatlas3gf-base (from .../libatlas3gf-base_3.8.3-27_amd64.deb) ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.3.2+dfsg-1_amd64.deb) ... Selecting previously deselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.2.6b-2_amd64.deb) ... Selecting previously deselected package libglpk0. Unpacking libglpk0 (from .../libglpk0_4.43-1_amd64.deb) ... Selecting previously deselected package libhdf5-serial-1.8.4. Unpacking libhdf5-serial-1.8.4 (from .../libhdf5-serial-1.8.4_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package liblzo2-2. Unpacking liblzo2-2 (from .../liblzo2-2_2.03-2_amd64.deb) ... Selecting previously deselected package libssl0.9.8. Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8o-4squeeze14_amd64.deb) ... Selecting previously deselected package python2.6-minimal. Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1_all.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7+squeeze1_amd64.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20100313-5_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.3-1_amd64.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package libshogun8. Unpacking libshogun8 (from .../libshogun8_0.9.3-4_amd64.deb) ... Selecting previously deselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.6.6-3+squeeze7_all.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.6-3+squeeze7_all.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.10_all.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.4.1-5_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libatlas3gf-base (3.8.3-27) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libgmp3c2 (2:4.3.2+dfsg-1) ... Setting up libltdl7 (2.2.6b-2) ... Setting up libglpk0 (4.43-1) ... Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-2) ... Setting up liblzo2-2 (2.03-2) ... Setting up libssl0.9.8 (0.9.8o-4squeeze14) ... Setting up python2.6-minimal (2.6.6-8+b1) ... Setting up mime-support (3.48-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up libexpat1 (2.0.1-7+squeeze1) ... Setting up libncursesw5 (5.7+20100313-5) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up python2.6 (2.6.6-8+b1) ... Setting up libpython2.6 (2.6.6-8+b1) ... Setting up libshogun8 (0.9.3-4) ... Setting up python-minimal (2.6.6-3+squeeze7) ... Setting up python (2.6.6-3+squeeze7) ... Setting up python-support (1.0.10) ... Setting up python-numpy (1:1.4.1-5) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for python-support ... 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', '-yf', 'install'] 0m25.0s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m25.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp3DYQ5i/tmp/piuparts-depends-dummy.deb 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m25.1s DUMP: piuparts-depends-dummy install ok installed 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m25.1s DUMP: (Reading database ... 7705 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'clean'] 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'clean'] 0m25.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m26.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m27.4s ERROR: WARN: Broken symlinks: /usr/include/python2.5/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/include/python2.5_d/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/lib/python2.4/site-packages/python-support.pth -> ../../pymodules/python2.4/.path /usr/lib/python2.5/site-packages/python-support.pth -> ../../pymodules/python2.5/.path 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-cache', 'policy'] 0m27.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-cache', 'policy'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-cache', 'policy', 'shogun-python-modular'] 0m27.4s DUMP: shogun-python-modular: Installed: (none) Candidate: 0.9.3-4 Version table: 0.9.3-4 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-cache', 'policy', 'shogun-python-modular'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', '-y', 'install', 'shogun-python-modular=0.9.3-4'] 0m28.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: python-matplotlib python-scipy The following NEW packages will be installed: shogun-python-modular 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3197 kB of archives. After this operation, 14.4 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main shogun-python-modular amd64 0.9.3-4 [3197 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3197 kB in 0s (21.3 MB/s) Selecting previously deselected package shogun-python-modular. (Reading database ... 7705 files and directories currently installed.) Unpacking shogun-python-modular (from .../shogun-python-modular_0.9.3-4_amd64.deb) ... Setting up shogun-python-modular (0.9.3-4) ... Processing triggers for python-support ... 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', '-y', 'install', 'shogun-python-modular=0.9.3-4'] 0m28.9s INFO: Running scripts post_install 0m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m29.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m30.5s ERROR: WARN: Broken symlinks: /usr/include/python2.5/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/include/python2.5_d/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/lib/python2.4/site-packages/python-support.pth -> ../../pymodules/python2.4/.path /usr/lib/python2.5/site-packages/python-support.pth -> ../../pymodules/python2.5/.path 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--get-selections', '*'] 0m30.5s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libatlas3gf-base install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libexpat1 install libgcc1 install libgfortran3 install libglpk0 install libgmp3c2 install libhdf5-serial-1.8.4 install liblocale-gettext-perl install libltdl7 install liblzma2 install liblzo2-2 install libncurses5 install libncursesw5 install libpam-modules install libpam-runtime install libpam0g install libpython2.6 install libreadline6 install libselinux1 install libsepol1 install libshogun8 install libslang2 install libsqlite3-0 install libss2 install libssl0.9.8 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mime-support install mount install ncurses-base install ncurses-bin install passwd install perl-base install python install python-minimal install python-numpy install python-support install python2.6 install python2.6-minimal install readline-common install sed install sensible-utils install shogun-python-modular install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--get-selections', '*'] 0m31.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', '-ac'] 0m32.1s DUMP: debsums: no md5sums for mawk 0m32.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', '-ac'] 0m32.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.1s DUMP: 0.11.3~bpo70+1 0m32.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.1s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m32.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'shogun-python-modular'] 0m32.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'shogun-python-modular'] 0m32.2s INFO: Running scripts pre_remove 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m32.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m32.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_exceptions'] 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/pre_remove_exceptions'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'remove', 'libltdl7', 'libatlas3gf-base', 'python2.6-minimal', 'libncursesw5', 'libgfortran3', 'libpython2.6', 'python', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'python2.6', 'libsqlite3-0', 'libgmp3c2', 'libshogun8', 'libglpk0', 'python-support', 'python-numpy', 'mime-support', 'libexpat1', 'python-minimal', 'libssl0.9.8', 'shogun-python-modular'] 0m33.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libatlas3gf-base libexpat1 libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libncursesw5 libpython2.6 libshogun8 libsqlite3-0 libssl0.9.8 mime-support python python-minimal python-numpy python-support python2.6 python2.6-minimal shogun-python-modular 0 upgraded, 0 newly installed, 21 to remove and 0 not upgraded. After this operation, 73.6 MB disk space will be freed. (Reading database ... 7857 files and directories currently installed.) Removing shogun-python-modular ... Removing libshogun8 ... Removing python-numpy ... Removing libatlas3gf-base ... Removing libpython2.6 ... Removing python-support ... Removing python ... Removing python2.6 ... Removing libexpat1 ... Removing libhdf5-serial-1.8.4 ... Removing libgfortran3 ... Removing libglpk0 ... Removing libgmp3c2 ... Removing libltdl7 ... Removing liblzo2-2 ... Removing libncursesw5 ... Removing libsqlite3-0 ... Removing python-minimal ... Removing python2.6-minimal ... Removing libssl0.9.8 ... Removing mime-support ... 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'remove', 'libltdl7', 'libatlas3gf-base', 'python2.6-minimal', 'libncursesw5', 'libgfortran3', 'libpython2.6', 'python', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'python2.6', 'libsqlite3-0', 'libgmp3c2', 'libshogun8', 'libglpk0', 'python-support', 'python-numpy', 'mime-support', 'libexpat1', 'python-minimal', 'libssl0.9.8', 'shogun-python-modular'] 0m33.3s INFO: Running scripts post_remove 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_remove_exceptions_lenny'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_remove_exceptions_lenny'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_remove_extras'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_remove_extras'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', 'libltdl7', 'libatlas3gf-base', 'python2.6-minimal', 'libncursesw5', 'libgfortran3', 'libpython2.6', 'python', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'python2.6', 'libsqlite3-0', 'libgmp3c2', 'libshogun8', 'libglpk0', 'python-support', 'python-numpy', 'mime-support', 'libexpat1', 'python-minimal', 'libssl0.9.8'] 0m33.5s DUMP: (Reading database ... 6263 files and directories currently installed.) Removing libltdl7 ... Purging configuration files for libltdl7 ... Removing libatlas3gf-base ... Purging configuration files for libatlas3gf-base ... Removing python2.6-minimal ... Purging configuration files for python2.6-minimal ... Removing libncursesw5 ... Purging configuration files for libncursesw5 ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libpython2.6 ... Purging configuration files for libpython2.6 ... Removing python ... Purging configuration files for python ... Removing libhdf5-serial-1.8.4 ... Purging configuration files for libhdf5-serial-1.8.4 ... Removing liblzo2-2 ... Purging configuration files for liblzo2-2 ... Removing python2.6 ... Purging configuration files for python2.6 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing libgmp3c2 ... Purging configuration files for libgmp3c2 ... Removing libshogun8 ... Purging configuration files for libshogun8 ... Removing libglpk0 ... Purging configuration files for libglpk0 ... Removing python-support ... Purging configuration files for python-support ... dpkg: warning: ignoring request to remove python-numpy which isn't installed. Removing mime-support ... Purging configuration files for mime-support ... Removing libexpat1 ... Purging configuration files for libexpat1 ... dpkg: warning: ignoring request to remove python-minimal which isn't installed. Removing libssl0.9.8 ... Purging configuration files for libssl0.9.8 ... 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', 'libltdl7', 'libatlas3gf-base', 'python2.6-minimal', 'libncursesw5', 'libgfortran3', 'libpython2.6', 'python', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'python2.6', 'libsqlite3-0', 'libgmp3c2', 'libshogun8', 'libglpk0', 'python-support', 'python-numpy', 'mime-support', 'libexpat1', 'python-minimal', 'libssl0.9.8'] 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', 'shogun-python-modular'] 0m33.5s DUMP: dpkg: warning: ignoring request to remove shogun-python-modular which isn't installed. 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', 'shogun-python-modular'] 0m33.5s INFO: Running scripts post_purge 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_purge_exceptions'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'tmp/scripts/post_purge_exceptions'] 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', '--pending'] 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--purge', '--pending'] 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--remove', '--pending'] 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg', '--remove', '--pending'] 0m33.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m33.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m34.6s DEBUG: No broken symlinks as far as we can find. 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg-divert', '--list'] 0m34.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'dpkg-divert', '--list'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'clean'] 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'apt-get', 'clean'] 0m35.7s INFO: PASS: Installation and purging test. 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'umount', '/proc'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i', 'umount', '/proc'] 0m36.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m36.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp3DYQ5i'] 0m36.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp3DYQ5i 0m36.1s INFO: PASS: All tests. 0m36.1s INFO: piuparts run ends. ret=0 End: 2014-02-20 09:49:07 UTC