Start: 2024-01-15 17:01:09 GMT Package: circlator Version: 1.5.6-7 Installed-Size: 10530 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: fastaq, python3-openpyxl, python3-pymummer, python3-pysam, python3:any, prodigal, bwa, mummer, samtools, spades, canu Description: circularize genome assemblies Homepage: http://sanger-pathogens.github.io/circlator/ Description-md5: cf235cf3121c5ca347cea31d93662299 Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::python, role::program, science::calculation, works-with::biological-sequence, works-with::file Section: science Priority: optional Filename: pool/main/c/circlator/circlator_1.5.6-7_amd64.deb Size: 4472876 MD5sum: 87065cef4638cd6f3ecfd386bcf2de0f SHA256: 18b83759e3900e6b677bbf7b3ec7eb85ada7a7268bcc55fd7ef453a3b1274caa Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt circlator=1.5.6-7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt circlator=1.5.6-7 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpuw_4z84l 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpuw_4z84l 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpuw_4z84l/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'update'] 0m2.1s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s DUMP: c39ed9ca72afa1f69a1eea88b0965329 - 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s INFO: Running scripts post_setup 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'clean'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'clean'] 0m3.7s DEBUG: Recording chroot state 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u3 install ok installed libc6:amd64 libc6 2.36-9+deb12u3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.19-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.19-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-5+deb12u1 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-divert', '--list'] 0m4.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-divert', '--list'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s INFO: apt-cache does not know about any of the requested packages 0m4.4s INFO: Running scripts pre_test 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 0m5.6s DEBUG: No broken symlinks as far as we can find. 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 0m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 0m6.3s DEBUG: No broken symlinks as far as we can find. 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-cache', 'policy'] 0m6.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.4,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-cache', 'policy'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-cache', 'policy', 'circlator'] 0m6.9s DUMP: circlator: Installed: (none) Candidate: 1.5.6-7 Version table: 1.5.6-7 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-cache', 'policy', 'circlator'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', '-y', 'install', 'circlator=1.5.6-7'] 0m52.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adwaita-icon-theme aglfn alsa-topology-conf alsa-ucm-conf at-spi2-common at-spi2-core bamtools binfmt-support bwa bzip2 ca-certificates ca-certificates-java canu dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre-headless dmsetup fastaq fastjar file fontconfig fontconfig-config fonts-dejavu-core gawk gnuplot gnuplot-data gnuplot-qt gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme jaligner jarwrapper java-common krb5-locales libabsl20220623 libaom3 libapache-pom-java libapparmor1 libargon2-1 libasound2 libasound2-data libatinject-jsr330-api-java libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libbamtools2.5.2 libblas3 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcolord2 libcommons-compress-java libcommons-parent-java libcryptsetup12 libcups2 libcurl3-gnutls libdatrie1 libdav1d6 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 liberror-prone-java libevdev2 libexpat1 libfastutil-java libfdisk1 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgbm1 libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-bin libgtk-3-common libguava-java libgudev-1.0-0 libharfbuzz0b libheif1 libhts3 libhtscodecs2 libice6 libicu72 libimagequant0 libinput-bin libinput10 libip4tc2 libjbig0 libjpeg62-turbo libjson-c5 libjsoncpp25 libjsr305-java libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm15 liblua5.4-0 libmagic-mgc libmagic1 libmd4c0 libmpfr6 libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libnlopt0 libnotify4 libnsl2 libnspr4 libnss-systemd libnss3 libnuma1 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcsclite1 libperl5.36 libpipeline1 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5svg5 libqt5waylandclient5 libqt5waylandcompositor5 libqt5widgets5 libquadmath0 libraqm0 librav1e0 libreadline8 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-0 libssh2-1 libssl3 libssw-java libssw0 libsvtav1enc1 libsystemd-shared libthai-data libthai0 libtiff6 libtirpc-common libtirpc3 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk3.2-1 libx11-6 libx11-data libx11-xcb1 libx265-199 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxtst6 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 mailcap media-types mhap mime-support mummer netbase openjdk-17-jre-headless openssl perl perl-modules-5.36 procps prodigal psmisc publicsuffix python3 python3-attr python3-bs4 python3-chardet python3-distutils python3-et-xmlfile python3-html5lib python3-iniconfig python3-jdcal python3-joblib python3-lib2to3 python3-lxml python3-minimal python3-more-itertools python3-numpy python3-olefile python3-openpyxl python3-packaging python3-pil python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pymummer python3-pysam python3-pytest python3-simplejson python3-six python3-soupsieve python3-webencodings python3-yaml python3.11 python3.11-minimal qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 readline-common samtools shared-mime-info spades systemd systemd-sysv systemd-timesyncd x11-common xdg-user-dirs xkb-data xz-utils Suggested packages: bzip2-doc pbgenomicconsensus nanopolish default-jre gawk-doc gnuplot-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc colord libasm-java libxz-java cups-common libgd-tools gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user gvfs libjsr305-java-doc liblcms2-utils notification-daemon pciutils pcscd sensible-utils qgnomeplatform-qt5 qt5-image-formats-plugins qt5-qmltooling-plugins librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libwacom-bin libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc python3-genshi python-lxml-doc gcc gfortran python3-dev python-pil-doc python3-setuptools python-psutil-doc subversion python-pygments-doc ttf-bitstream-vera python3.11-venv python3.11-doc binutils readline-doc cwltool systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libfido2-1 libqrencode4 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 polkitd | policykit-1 The following NEW packages will be installed: adwaita-icon-theme aglfn alsa-topology-conf alsa-ucm-conf at-spi2-common at-spi2-core bamtools binfmt-support bwa bzip2 ca-certificates ca-certificates-java canu circlator dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre-headless dmsetup fastaq fastjar file fontconfig fontconfig-config fonts-dejavu-core gawk gnuplot gnuplot-data gnuplot-qt gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme jaligner jarwrapper java-common krb5-locales libabsl20220623 libaom3 libapache-pom-java libapparmor1 libargon2-1 libasound2 libasound2-data libatinject-jsr330-api-java libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libbamtools2.5.2 libblas3 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcolord2 libcommons-compress-java libcommons-parent-java libcryptsetup12 libcups2 libcurl3-gnutls libdatrie1 libdav1d6 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 liberror-prone-java libevdev2 libexpat1 libfastutil-java libfdisk1 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgbm1 libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-bin libgtk-3-common libguava-java libgudev-1.0-0 libharfbuzz0b libheif1 libhts3 libhtscodecs2 libice6 libicu72 libimagequant0 libinput-bin libinput10 libip4tc2 libjbig0 libjpeg62-turbo libjson-c5 libjsoncpp25 libjsr305-java libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm15 liblua5.4-0 libmagic-mgc libmagic1 libmd4c0 libmpfr6 libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libnlopt0 libnotify4 libnsl2 libnspr4 libnss-systemd libnss3 libnuma1 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcsclite1 libperl5.36 libpipeline1 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5svg5 libqt5waylandclient5 libqt5waylandcompositor5 libqt5widgets5 libquadmath0 libraqm0 librav1e0 libreadline8 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-0 libssh2-1 libssl3 libssw-java libssw0 libsvtav1enc1 libsystemd-shared libthai-data libthai0 libtiff6 libtirpc-common libtirpc3 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk3.2-1 libx11-6 libx11-data libx11-xcb1 libx265-199 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxtst6 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 mailcap media-types mhap mime-support mummer netbase openjdk-17-jre-headless openssl perl perl-modules-5.36 procps prodigal psmisc publicsuffix python3 python3-attr python3-bs4 python3-chardet python3-distutils python3-et-xmlfile python3-html5lib python3-iniconfig python3-jdcal python3-joblib python3-lib2to3 python3-lxml python3-minimal python3-more-itertools python3-numpy python3-olefile python3-openpyxl python3-packaging python3-pil python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pymummer python3-pysam python3-pytest python3-simplejson python3-six python3-soupsieve python3-webencodings python3-yaml python3.11 python3.11-minimal qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 readline-common samtools shared-mime-info spades systemd systemd-sysv systemd-timesyncd x11-common xdg-user-dirs xkb-data xz-utils 0 upgraded, 338 newly installed, 0 to remove and 0 not upgraded. Need to get 245 MB of archives. After this operation, 984 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libargon2-1 amd64 0~20171227-0.3+deb12u1 [19.4 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 dmsetup amd64 2:1.02.185-2 [82.0 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-2 [133 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libjson-c5 amd64 0.16-2 [44.1 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libcryptsetup12 amd64 2:2.6.1-4~deb12u1 [223 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libfdisk1 amd64 2.38.1-5+b1 [194 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkmod2 amd64 30+20221128-1 [57.9 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libapparmor1 amd64 3.0.8-3 [41.2 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libip4tc2 amd64 1.8.9-2 [19.0 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libsystemd-shared amd64 252.19-1~deb12u1 [1693 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 systemd amd64 252.19-1~deb12u1 [3028 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 systemd-sysv amd64 252.19-1~deb12u1 [41.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 dbus-bin amd64 1.14.10-1~deb12u1 [105 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 dbus-session-bus-common all 1.14.10-1~deb12u1 [78.2 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 dbus-daemon amd64 1.14.10-1~deb12u1 [184 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 dbus-system-bus-common all 1.14.10-1~deb12u1 [79.3 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 dbus amd64 1.14.10-1~deb12u1 [97.4 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 binfmt-support amd64 2.2.2-2 [64.0 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:43 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:52 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 krb5-locales all 1.20.1-2+deb12u1 [62.7 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libnss-systemd amd64 252.19-1~deb12u1 [163 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libpam-systemd amd64 252.19-1~deb12u1 [224 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 systemd-timesyncd amd64 252.19-1~deb12u1 [62.8 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 xz-utils amd64 5.4.1-0.2 [471 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1+b1 [139 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 gtk-update-icon-cache amd64 3.24.38-2~deb12u1 [44.0 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 adwaita-icon-theme all 43-1 [5124 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 alsa-topology-conf all 1.2.5.1-2 [15.2 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 alsa-ucm-conf all 1.2.8-1 [51.7 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 at-spi2-common all 2.46.0-5 [162 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libatspi2.0-0 amd64 2.46.0-5 [75.4 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 dbus-user-session amd64 1.14.10-1~deb12u1 [78.1 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libdconf1 amd64 0.40.0-4 [40.9 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 dconf-service amd64 0.40.0-4 [31.6 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 dconf-gsettings-backend amd64 0.40.0-4 [27.8 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 gsettings-desktop-schemas all 43.0-1 [643 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 at-spi2-core amd64 2.46.0-5 [57.3 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-4 [149 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 bamtools amd64 2.5.2+dfsg-4 [193 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 bwa amd64 0.7.17-7+b2 [212 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libfilesys-df-perl amd64 0.92-7+b1 [11.4 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:114 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u5 [245 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.9+9-1~deb12u1 [43.7 MB] Get:130 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-74 [2936 B] Get:131 http://deb.debian.org/debian bookworm/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 jarwrapper all 0.78 [21.8 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get:134 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libcommons-compress-java all 1.22-1 [615 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libfastutil-java all 8.5.11+dfsg-1 [19.6 MB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:138 http://deb.debian.org/debian bookworm/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libguava-java all 31.1-1 [2613 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 jaligner all 1.0+dfsg-10 [132 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libssw-java amd64 1.1-13 [16.7 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 mhap all 2.1.3+dfsg-3 [160 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 gnuplot-data all 5.4.4+dfsg1-2 [72.1 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1+deb12u1 [185 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 liblua5.4-0 amd64 5.4.4-3 [137 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libqt5core5a amd64 5.15.8+dfsg-11 [1809 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get:178 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 libwayland-server0 amd64 1.21.0-1 [35.9 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 libgbm1 amd64 22.3.6-1+deb12u1 [38.0 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 libwayland-client0 amd64 1.21.0-1 [28.3 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2+deb12u2 [192 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:192 http://deb.debian.org/debian bookworm/main amd64 libegl-mesa0 amd64 22.3.6-1+deb12u1 [114 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 libegl1 amd64 1.6.0-1 [33.7 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get:205 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 libevdev2 amd64 1.13.0+dfsg-1 [34.0 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 libgudev-1.0-0 amd64 237-2 [15.1 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 libwacom-common all 2.6.0-1 [58.4 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 libwacom9 amd64 2.6.0-1 [21.5 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 libinput-bin amd64 1.22.1-1 [23.2 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 libinput10 amd64 1.22.1-1 [125 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 libmd4c0 amd64 0.4.8-1 [44.2 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 libqt5dbus5 amd64 5.15.8+dfsg-11 [211 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 libqt5network5 amd64 5.15.8+dfsg-11 [674 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 libxcb-image0 amd64 0.4.0-2 [22.9 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 libxcb-shape0 amd64 1.15-1 [106 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinerama0 amd64 1.15-1 [105 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 libxcb-xinput0 amd64 1.15-1 [130 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 libxcb-xkb1 amd64 1.15-1 [129 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 xkb-data all 2.35.1-1 [764 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon0 amd64 1.5.0-1 [106 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 libxkbcommon-x11-0 amd64 1.5.0-1 [15.6 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 libqt5gui5 amd64 5.15.8+dfsg-11 [3408 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 libqt5widgets5 amd64 5.15.8+dfsg-11 [2383 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 libqt5printsupport5 amd64 5.15.8+dfsg-11 [202 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 libqt5svg5 amd64 5.15.8-3 [134 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 libwxbase3.2-1 amd64 3.2.2+dfsg-2 [948 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 libatk1.0-0 amd64 2.46.0-5 [49.6 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 libatk-bridge2.0-0 amd64 2.46.0-5 [64.6 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 libcairo-gobject2 amd64 1.16.0-7 [112 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 libcolord2 amd64 1.4.6-2.2 [137 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 libepoxy0 amd64 1.5.10-1 [189 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 libwayland-cursor0 amd64 1.21.0-1 [14.4 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 libwayland-egl1 amd64 1.21.0-1 [8640 B] Get:248 http://deb.debian.org/debian bookworm/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 libgtk-3-common all 3.24.38-2~deb12u1 [3895 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 libgtk-3-0 amd64 3.24.38-2~deb12u1 [2846 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 libnotify4 amd64 0.8.1-1 [30.1 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 libwxgtk3.2-1 amd64 3.2.2+dfsg-2 [4504 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 gnuplot-qt amd64 5.4.4+dfsg1-2+b2 [1074 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 gnuplot all 5.4.4+dfsg1-2 [5844 B] Get:259 http://deb.debian.org/debian bookworm/main amd64 canu amd64 2.0+dfsg-2+b1 [1211 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u4 [385 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 fastaq all 3.17.0-5 [48.2 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:275 http://deb.debian.org/debian bookworm/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get:276 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 python3-openpyxl all 3.0.9-1 [161 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 python3-pymummer all 0.11.0-3 [11.4 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-3+b1 [1681 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 libnlopt0 amd64 2.7.1-5 [174 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 python3-joblib all 1.2.0-4 [211 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 spades amd64 3.15.5+dfsg-2 [8663 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 circlator amd64 1.5.6-7 [4473 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf2.0-bin amd64 2.42.10+dfsg-1+b1 [17.9 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2 [1207 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 libgpm2 amd64 1.20.7-10+b1 [14.2 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 libgtk-3-bin amd64 3.24.38-2~deb12u1 [82.6 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 libldap-common all 2.5.13+dfsg-5 [29.3 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 libqt5qml5 amd64 5.15.8+dfsg-3 [1356 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 libqt5qmlmodels5 amd64 5.15.8+dfsg-3 [189 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 libqt5quick5 amd64 5.15.8+dfsg-3 [1592 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 libqt5waylandclient5 amd64 5.15.8-2 [370 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 libqt5waylandcompositor5 amd64 5.15.8-2 [354 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 librsvg2-2 amd64 2.54.7+dfsg-1~deb12u1 [2620 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 librsvg2-common amd64 2.54.7+dfsg-1~deb12u1 [21.4 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules amd64 2.1.28+dfsg-10 [66.6 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 psmisc amd64 23.6-1 [259 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 publicsuffix all 20230209.2326-1 [126 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 python3-soupsieve all 2.3.2-1 [38.8 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 python3-bs4 all 4.11.2-2 [121 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 python3-html5lib all 1.1-3 [93.0 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:324 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get:329 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:332 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get:333 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get:334 http://deb.debian.org/debian bookworm/main amd64 python3-simplejson amd64 3.18.3-1 [59.8 kB] Get:335 http://deb.debian.org/debian bookworm/main amd64 qt5-gtk-platformtheme amd64 5.15.8+dfsg-11 [125 kB] Get:336 http://deb.debian.org/debian bookworm/main amd64 qttranslations5-l10n all 5.15.8-2 [1834 kB] Get:337 http://deb.debian.org/debian bookworm/main amd64 qtwayland5 amd64 5.15.8-2 [204 kB] Get:338 http://deb.debian.org/debian bookworm/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 245 MB in 2s (112 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../00-libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libargon2-1:amd64. Preparing to unpack .../01-libargon2-1_0~20171227-0.3+deb12u1_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... Selecting previously unselected package dmsetup. Preparing to unpack .../02-dmsetup_2%3a1.02.185-2_amd64.deb ... Unpacking dmsetup (2:1.02.185-2) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.185-2_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Selecting previously unselected package libjson-c5:amd64. Preparing to unpack .../04-libjson-c5_0.16-2_amd64.deb ... Unpacking libjson-c5:amd64 (0.16-2) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../05-libcryptsetup12_2%3a2.6.1-4~deb12u1_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.6.1-4~deb12u1) ... Selecting previously unselected package libfdisk1:amd64. Preparing to unpack .../06-libfdisk1_2.38.1-5+b1_amd64.deb ... Unpacking libfdisk1:amd64 (2.38.1-5+b1) ... Selecting previously unselected package libkmod2:amd64. Preparing to unpack .../07-libkmod2_30+20221128-1_amd64.deb ... Unpacking libkmod2:amd64 (30+20221128-1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../08-libapparmor1_3.0.8-3_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.8-3) ... Selecting previously unselected package libip4tc2:amd64. Preparing to unpack .../09-libip4tc2_1.8.9-2_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.9-2) ... Selecting previously unselected package libsystemd-shared:amd64. Preparing to unpack .../10-libsystemd-shared_252.19-1~deb12u1_amd64.deb ... Unpacking libsystemd-shared:amd64 (252.19-1~deb12u1) ... Setting up libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6187 files and directories currently installed.) Preparing to unpack .../systemd_252.19-1~deb12u1_amd64.deb ... Unpacking systemd (252.19-1~deb12u1) ... Setting up libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... Setting up libjson-c5:amd64 (0.16-2) ... Setting up libfdisk1:amd64 (2.38.1-5+b1) ... Setting up libkmod2:amd64 (30+20221128-1) ... Setting up libapparmor1:amd64 (3.0.8-3) ... Setting up libip4tc2:amd64 (1.8.9-2) ... Setting up libsystemd-shared:amd64 (252.19-1~deb12u1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Setting up libcryptsetup12:amd64 (2:2.6.1-4~deb12u1) ... Setting up systemd (252.19-1~deb12u1) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. "/home" already exists and is not a directory. Setting up dmsetup (2:1.02.185-2) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7035 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_252.19-1~deb12u1_amd64.deb ... Unpacking systemd-sysv (252.19-1~deb12u1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.14.10-1~deb12u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../02-dbus-bin_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus-bin (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../03-dbus-session-bus-common_1.14.10-1~deb12u1_all.deb ... Unpacking dbus-session-bus-common (1.14.10-1~deb12u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../04-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus-daemon (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.14.10-1~deb12u1_all.deb ... Unpacking dbus-system-bus-common (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus (1.14.10-1~deb12u1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../08-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../09-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../10-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../11-libperl5.36_5.36.0-7+deb12u1_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u1) ... Selecting previously unselected package perl. Preparing to unpack .../12-perl_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl (5.36.0-7+deb12u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../13-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../14-binfmt-support_2.2.2-2_amd64.deb ... Unpacking binfmt-support (2.2.2-2) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../15-libmpfr6_4.2.0-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.2.0-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../16-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../17-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../18-libsigsegv2_2.14-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up readline-common (8.2-1.3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libsigsegv2:amd64 (2.14-1) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9208 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2_amd64.deb ... Unpacking gawk (1:5.2.1-2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11-minimal. 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Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up libnss-systemd:amd64 (252.19-1~deb12u1) ... Setting up xkb-data (2.35.1-1) ... Setting up libnlopt0:amd64 (2.7.1-5) ... Setting up krb5-locales (1.20.1-2+deb12u1) ... Setting up file (1:5.44-3) ... Setting up libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up bzip2 (1.0.8-5+b1) ... Setting up libldap-common (2.5.13+dfsg-5) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up librav1e0:amd64 (0.5.1-6) ... Setting up libpcre2-16-0:amd64 (10.42-1) ... Setting up libcolord2:amd64 (1.4.6-2.2) ... Setting up libssw-java (1.1-13) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libdconf1:amd64 (0.40.0-4) ... Setting up libasound2-data (1.2.8-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libpcre2-32-0:amd64 (10.42-1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.74.6-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up qttranslations5-l10n (5.15.8-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libepoxy0:amd64 (1.5.10-1) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up xz-utils (5.4.1-0.2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up systemd-timesyncd (252.19-1~deb12u1) ... Creating group 'systemd-timesync' with GID 997. Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997. Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /lib/systemd/system/systemd-timesyncd.service. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service → /lib/systemd/system/systemd-timesyncd.service. Setting up binfmt-support (2.2.2-2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /lib/systemd/system/binfmt-support.service. Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libsensors5:amd64 (1:3.6.0-7.1) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-4) ... Setting up libdav1d6:amd64 (1.0.0-2) ... Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libmtdev1:amd64 (1.1.6-1) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up alsa-topology-conf (1.2.5.1-2) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up at-spi2-common (2.46.0-5) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up bamtools (2.5.2+dfsg-4) ... Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... Setting up procps (2:4.0.2-3) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libmd4c0:amd64 (0.4.8-1) ... Setting up liblua5.4-0:amd64 (5.4.4-3) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up netbase (6.4) ... Setting up libatk1.0-0:amd64 (2.46.0-5) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libwayland-egl1:amd64 (1.21.0-1) ... Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... Setting up libde265-0:amd64 (1.0.11-1+deb12u1) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up libevdev2:amd64 (1.13.0+dfsg-1) ... Setting up publicsuffix (20230209.2326-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up dbus-bin (1.14.10-1~deb12u1) ... Setting up libgudev-1.0-0:amd64 (237-2) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libwacom-common (2.6.0-1) ... Setting up libxkbcommon0:amd64 (1.5.0-1) ... Setting up libwayland-client0:amd64 (1.21.0-1) ... Setting up gnuplot-data (5.4.4+dfsg1-2) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libavif15:amd64 (0.11.1-1) ... Setting up libxcb-xinput0:amd64 (1.15-1) ... Setting up jarwrapper (0.78) ... Setting up alsa-ucm-conf (1.2.8-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libwacom9:amd64 (2.6.0-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.15-1) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up dbus-daemon (1.14.10-1~deb12u1) ... Setting up libwxbase3.2-1:amd64 (3.2.2+dfsg-2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libinput-bin (1.22.1-1) ... Setting up libxcb-xkb1:amd64 (1.15-1) ... Setting up libxcb-image0:amd64 (0.4.0-2) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxcb-xinerama0:amd64 (1.15-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up dbus (1.14.10-1~deb12u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.2-1) ... Setting up libxkbcommon-x11-0:amd64 (1.5.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libqt5core5a:amd64 (5.15.8+dfsg-11) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libdrm2:amd64 (2.4.114-1+b1) ... Setting up libqt5dbus5:amd64 (5.15.8+dfsg-11) ... Setting up libwayland-cursor0:amd64 (1.21.0-1) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libpam-systemd:amd64 (252.19-1~deb12u1) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libinput10:amd64 (1.22.1-1) ... Setting up gtk-update-icon-cache (3.24.38-2~deb12u1) ... Setting up libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Setting up libxdamage1:amd64 (1:1.1.6-1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u4) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libqt5network5:amd64 (5.15.8+dfsg-11) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up dbus-user-session (1.14.10-1~deb12u1) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libqt5qml5:amd64 (5.15.8+dfsg-3) ... Setting up libnotify4:amd64 (0.8.1-1) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libcups2:amd64 (2.4.2-3+deb12u5) ... Setting up libgdk-pixbuf2.0-bin (2.42.10+dfsg-1+b1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libegl1:amd64 (1.6.0-1) ... Setting up mummer (3.23+dfsg-8) ... Setting up libcairo-gobject2:amd64 (1.16.0-7) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libqt5qmlmodels5:amd64 (5.15.8+dfsg-3) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up mime-support (3.66) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up libfilesys-df-perl (0.92-7+b1) ... Setting up dconf-service (0.40.0-4) ... Setting up libatspi2.0-0:amd64 (2.46.0-5) ... Setting up samtools (1.16.1-1) ... Setting up librsvg2-2:amd64 (2.54.7+dfsg-1~deb12u1) ... Setting up libatk-bridge2.0-0:amd64 (2.46.0-5) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up librsvg2-common:amd64 (2.54.7+dfsg-1~deb12u1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.9+9-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up dconf-gsettings-backend:amd64 (0.40.0-4) ... Setting up libqt5gui5:amd64 (5.15.8+dfsg-11) ... Setting up libqt5widgets5:amd64 (5.15.8+dfsg-11) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-webencodings (0.5.1-5) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up libqt5waylandclient5:amd64 (5.15.8-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up libqt5printsupport5:amd64 (5.15.8+dfsg-11) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-html5lib (1.1-3) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up libqt5quick5:amd64 (5.15.8+dfsg-3) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-soupsieve (2.3.2-1) ... Setting up libgtk-3-common (3.24.38-2~deb12u1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up gsettings-desktop-schemas (43.0-1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-joblib (1.2.0-4) ... Setting up libgtk-3-0:amd64 (3.24.38-2~deb12u1) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-olefile (0.46-3) ... Setting up fastaq (3.17.0-5) ... Setting up libqt5svg5:amd64 (5.15.8-3) ... Setting up python3-yaml (6.0-3+b2) ... Setting up libgtk-3-bin (3.24.38-2~deb12u1) ... Setting up qt5-gtk-platformtheme:amd64 (5.15.8+dfsg-11) ... Setting up python3-bs4 (4.11.2-2) ... Setting up python3-pymummer (0.11.0-3) ... Setting up libqt5waylandcompositor5:amd64 (5.15.8-2) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-openpyxl (3.0.9-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up at-spi2-core (2.46.0-5) ... Setting up spades (3.15.5+dfsg-2) ... Setting up libwxgtk3.2-1:amd64 (3.2.2+dfsg-2) ... Setting up qtwayland5:amd64 (5.15.8-2) ... Setting up gnuplot-qt (5.4.4+dfsg1-2+b2) ... update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up gnuplot (5.4.4+dfsg1-2) ... Setting up libguava-java (31.1-1) ... Setting up liberror-prone-java (2.18.0-1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for systemd (252.19-1~deb12u1) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up default-jre-headless (2:1.17-74) ... Setting up jaligner (1.0+dfsg-10) ... Setting up mhap (2.1.3+dfsg-3) ... Setting up canu (2.0+dfsg-2+b1) ... Setting up circlator (1.5.6-7) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', '-y', 'install', 'circlator=1.5.6-7'] 0m52.3s INFO: Running scripts post_install 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_install_exceptions'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_install_exceptions'] 0m52.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 0m54.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 0m56.6s ERROR: WARN: Broken symlinks: /usr/lib/x86_64-linux-gnu/qt-default/qtchooser/default.conf -> ../../../../share/qtchooser/qt5-x86_64-linux-gnu.conf (libqt5core5a:amd64) 0m56.7s INFO: /bin converted to /usr/bin by /usr merge 0m56.7s INFO: /lib converted to /usr/lib by /usr merge 0m56.7s INFO: /lib/firmware converted to /usr/lib/firmware by /usr merge 0m56.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m56.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m56.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m56.7s INFO: /lib/modprobe.d converted to /usr/lib/modprobe.d by /usr merge 0m56.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m56.7s INFO: /lib/systemd/network converted to /usr/lib/systemd/network by /usr merge 0m56.7s INFO: /lib/systemd/ntp-units.d converted to /usr/lib/systemd/ntp-units.d by /usr merge 0m56.7s INFO: /lib/systemd/system-generators converted to /usr/lib/systemd/system-generators by /usr merge 0m56.7s INFO: /lib/systemd/system-preset converted to /usr/lib/systemd/system-preset by /usr merge 0m56.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m56.7s INFO: /lib/systemd/system/getty.target.wants converted to /usr/lib/systemd/system/getty.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/graphical.target.wants converted to /usr/lib/systemd/system/graphical.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/initrd-root-device.target.wants converted to /usr/lib/systemd/system/initrd-root-device.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/initrd-root-fs.target.wants converted to /usr/lib/systemd/system/initrd-root-fs.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/initrd.target.wants converted to /usr/lib/systemd/system/initrd.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/rc-local.service.d converted to /usr/lib/systemd/system/rc-local.service.d by /usr merge 0m56.7s INFO: /lib/systemd/system/rescue.target.wants converted to /usr/lib/systemd/system/rescue.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/sysinit.target.wants converted to /usr/lib/systemd/system/sysinit.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/systemd-localed.service.d converted to /usr/lib/systemd/system/systemd-localed.service.d by /usr merge 0m56.7s INFO: /lib/systemd/system/timers.target.wants converted to /usr/lib/systemd/system/timers.target.wants by /usr merge 0m56.7s INFO: /lib/systemd/system/user-.slice.d converted to /usr/lib/systemd/system/user-.slice.d by /usr merge 0m56.7s INFO: /lib/systemd/system/user@.service.d converted to /usr/lib/systemd/system/user@.service.d by /usr merge 0m56.7s INFO: /lib/systemd/system/user@0.service.d converted to /usr/lib/systemd/system/user@0.service.d by /usr merge 0m56.7s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m56.7s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m56.7s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m56.7s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m56.7s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m56.7s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m56.7s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m56.7s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m56.7s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m56.7s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m56.7s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m56.7s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m56.7s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m56.7s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m56.7s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m56.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m56.7s INFO: /lib/udev/hwdb.d converted to /usr/lib/udev/hwdb.d by /usr merge 0m56.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m56.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m56.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m56.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m56.7s INFO: /sbin converted to /usr/sbin by /usr merge 0m58.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', '-ac', '--ignore-obsolete'] 1m2.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', '-ac', '--ignore-obsolete'] 1m2.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m2.7s DUMP: 0.15.6 1m2.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m2.7s INFO: Running adequate version 0.15.6 now. 1m2.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'circlator'] 1m2.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'circlator'] 1m2.8s INFO: Running scripts pre_remove 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_exceptions'] 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/pre_remove_exceptions'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.5s DUMP: install ok installed adduser adduser 3.134 install ok installed adwaita-icon-theme adwaita-icon-theme 43-1 install ok installed aglfn aglfn 1.7+git20191031.4036a9c-2 install ok installed alsa-topology-conf alsa-topology-conf 1.2.5.1-2 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.8-1 install ok installed apt apt 2.6.1 install ok installed at-spi2-common at-spi2-common 2.46.0-5 install ok installed at-spi2-core at-spi2-core 2.46.0-5 install ok installed bamtools bamtools 2.5.2+dfsg-4 install ok installed base-files base-files 12.4+deb12u4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed binfmt-support binfmt-support 2.2.2-2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed bwa bwa 0.7.17-7+b2 install ok installed bzip2 bzip2 1.0.8-5+b1 install ok installed ca-certificates ca-certificates 20230311 install ok installed ca-certificates-java ca-certificates-java 20230710~deb12u1 install ok installed canu canu 2.0+dfsg-2+b1 install ok installed circlator circlator 1.5.6-7 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed dbus dbus 1.14.10-1~deb12u1 install ok installed dbus-bin dbus-bin 1.14.10-1~deb12u1 install ok installed dbus-daemon dbus-daemon 1.14.10-1~deb12u1 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-1~deb12u1 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-1~deb12u1 install ok installed dbus-user-session dbus-user-session 1.14.10-1~deb12u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.40.0-4 install ok installed dconf-service dconf-service 0.40.0-4 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed default-jre-headless default-jre-headless 2:1.17-74 install ok installed diffutils diffutils 1:3.8-4 install ok installed dmsetup dmsetup 2:1.02.185-2 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed fastaq fastaq 3.17.0-5 install ok installed fastjar fastjar 2:0.98-7 install ok installed file file 1:5.44-3 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig fontconfig 2.14.1-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-6 install ok installed gawk gawk 1:5.2.1-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gnuplot gnuplot 5.4.4+dfsg1-2 install ok installed gnuplot-data gnuplot-data 5.4.4+dfsg1-2 install ok installed gnuplot-qt gnuplot-qt 5.4.4+dfsg1-2+b2 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 43.0-1 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.38-2~deb12u1 install ok installed gzip gzip 1.12-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed jaligner jaligner 1.0+dfsg-10 install ok installed jarwrapper jarwrapper 0.78 install ok installed java-common java-common 0.74 install ok installed krb5-locales krb5-locales 1.20.1-2+deb12u1 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libaom3:amd64 libaom3 3.6.0-1 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapparmor1:amd64 libapparmor1 3.0.8-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libargon2-1:amd64 libargon2-1 0~20171227-0.3+deb12u1 install ok installed libasound2:amd64 libasound2 1.2.8-1+b1 install ok installed libasound2-data libasound2-data 1.2.8-1 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.46.0-5 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.46.0-5 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.46.0-5 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-10 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-10 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-10 install ok installed libavif15:amd64 libavif15 0.11.1-1 install ok installed libbamtools2.5.2:amd64 libbamtools2.5.2 2.5.2+dfsg-4 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u3 install ok installed libc6:amd64 libc6 2.36-9+deb12u3 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.16.0-7 install ok installed libcairo2:amd64 libcairo2 1.16.0-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcolord2:amd64 libcolord2 1.4.6-2.2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcommons-compress-java libcommons-compress-java 1.22-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libcryptsetup12:amd64 libcryptsetup12 2:2.6.1-4~deb12u1 install ok installed libcups2:amd64 libcups2 2.4.2-3+deb12u5 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u4 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdav1d6:amd64 libdav1d6 1.0.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-1~deb12u1 install ok installed libdconf1:amd64 libdconf1 0.40.0-4 install ok installed libde265-0:amd64 libde265-0 1.0.11-1+deb12u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.185-2 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.2.1-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.114-1+b1 install ok installed libdrm-common libdrm-common 2.4.114-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.114-1+b1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.114-1+b1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.114-1+b1 install ok installed libdrm2:amd64 libdrm2 2.4.114-1+b1 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libegl-mesa0:amd64 libegl-mesa0 22.3.6-1+deb12u1 install ok installed libegl1:amd64 libegl1 1.6.0-1 install ok installed libelf1:amd64 libelf1 0.188-2.1 install ok installed libepoxy0:amd64 libepoxy0 1.5.10-1 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libevdev2:amd64 libevdev2 1.13.0+dfsg-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libfastutil-java libfastutil-java 8.5.11+dfsg-1 install ok installed libfdisk1:amd64 libfdisk1 2.38.1-5+b1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfilesys-df-perl libfilesys-df-perl 0.92-7+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgbm1:amd64 libgbm1 22.3.6-1+deb12u1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgd3:amd64 libgd3 2.3.3-9 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.10+dfsg-1+b1 install ok installed libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-bin 2.42.10+dfsg-1+b1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.10+dfsg-1 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libgl1:amd64 libgl1 1.6.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 22.3.6-1+deb12u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 22.3.6-1+deb12u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2 install ok installed libglib2.0-data libglib2.0-data 2.74.6-2 install ok installed libglvnd0:amd64 libglvnd0 1.6.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 22.3.6-1+deb12u1 install ok installed libglx0:amd64 libglx0 1.6.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u1 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-10+b1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u1 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.24.38-2~deb12u1 install ok installed libgtk-3-bin libgtk-3-bin 3.24.38-2~deb12u1 install ok installed libgtk-3-common libgtk-3-common 3.24.38-2~deb12u1 install ok installed libguava-java libguava-java 31.1-1 install ok installed libgudev-1.0-0:amd64 libgudev-1.0-0 237-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libheif1:amd64 libheif1 1.15.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libinput-bin libinput-bin 1.22.1-1 install ok installed libinput10:amd64 libinput10 1.22.1-1 install ok installed libip4tc2:amd64 libip4tc2 1.8.9-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjson-c5:amd64 libjson-c5 0.16-2 install ok installed libjsoncpp25:amd64 libjsoncpp25 1.9.5-4 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkmod2:amd64 libkmod2 30+20221128-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed libldap-common libldap-common 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed libllvm15:amd64 libllvm15 1:15.0.6-4+b1 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.4-3 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmagic-mgc libmagic-mgc 1:5.44-3 install ok installed libmagic1:amd64 libmagic1 1:5.44-3 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmd4c0:amd64 libmd4c0 0.4.8-1 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libmtdev1:amd64 libmtdev1 1.1.6-1 install ok installed libncurses6:amd64 libncurses6 6.4-4 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnlopt0:amd64 libnlopt0 2.7.1-5 install ok installed libnotify4:amd64 libnotify4 0.8.1-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1 install ok installed libnss-systemd:amd64 libnss-systemd 252.19-1~deb12u1 install ok installed libnss3:amd64 libnss3 2:3.87.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam-systemd:amd64 libpam-systemd 252.19-1~deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.12+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.12+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.12+ds-1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.42-1 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.42-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.9-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpipeline1:amd64 libpipeline1 1.5.7-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.2-3 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6 install ok installed libqt5core5a:amd64 libqt5core5a 5.15.8+dfsg-11 install ok installed libqt5dbus5:amd64 libqt5dbus5 5.15.8+dfsg-11 install ok installed libqt5gui5:amd64 libqt5gui5 5.15.8+dfsg-11 install ok installed libqt5network5:amd64 libqt5network5 5.15.8+dfsg-11 install ok installed libqt5printsupport5:amd64 libqt5printsupport5 5.15.8+dfsg-11 install ok installed libqt5qml5:amd64 libqt5qml5 5.15.8+dfsg-3 install ok installed libqt5qmlmodels5:amd64 libqt5qmlmodels5 5.15.8+dfsg-3 install ok installed libqt5quick5:amd64 libqt5quick5 5.15.8+dfsg-3 install ok installed libqt5svg5:amd64 libqt5svg5 5.15.8-3 install ok installed libqt5waylandclient5:amd64 libqt5waylandclient5 5.15.8-2 install ok installed libqt5waylandcompositor5:amd64 libqt5waylandcompositor5 5.15.8-2 install ok installed libqt5widgets5:amd64 libqt5widgets5 5.15.8+dfsg-11 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.7.0-4.1 install ok installed librav1e0:amd64 librav1e0 0.5.1-6 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librsvg2-2:amd64 librsvg2-2 2.54.7+dfsg-1~deb12u1 install ok installed librsvg2-common:amd64 librsvg2-common 2.54.7+dfsg-1~deb12u1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsensors-config libsensors-config 1:3.6.0-7.1 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7.1 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsigsegv2:amd64 libsigsegv2 2.14-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.11-1~deb12u2 install ok installed libssw-java libssw-java 1.1-13 install ok installed libssw0:amd64 libssw0 1.1-13 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsvtav1enc1:amd64 libsvtav1enc1 1.4.1+dfsg-1 install ok installed libsystemd-shared:amd64 libsystemd-shared 252.19-1~deb12u1 install ok installed libsystemd0:amd64 libsystemd0 252.19-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 252.19-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libwacom-common libwacom-common 2.6.0-1 install ok installed libwacom9:amd64 libwacom9 2.6.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.21.0-1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.21.0-1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.21.0-1 install ok installed libwayland-server0:amd64 libwayland-server0 1.21.0-1 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.4-0.2+deb12u1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.4-0.2+deb12u1 install ok installed libwxbase3.2-1:amd64 libwxbase3.2-1 3.2.2+dfsg-2 install ok installed libwxgtk3.2-1:amd64 libwxgtk3.2-1 3.2.2+dfsg-2 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.4-2+deb12u2 install ok installed libx265-199:amd64 libx265-199 3.5-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.15-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.15-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.15-1 install ok installed libxcb-icccm4:amd64 libxcb-icccm4 0.4.1-1.1 install ok installed libxcb-image0:amd64 libxcb-image0 0.4.0-2 install ok installed libxcb-keysyms1:amd64 libxcb-keysyms1 0.4.0-1+b2 install ok installed libxcb-present0:amd64 libxcb-present0 1.15-1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.15-1 install ok installed libxcb-render-util0:amd64 libxcb-render-util0 0.3.9-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.15-1 install ok installed libxcb-util1:amd64 libxcb-util1 0.4.0-1+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.15-1 install ok installed libxcb-xinerama0:amd64 libxcb-xinerama0 1.15-1 install ok installed libxcb-xinput0:amd64 libxcb-xinput0 1.15-1 install ok installed libxcb-xkb1:amd64 libxcb-xkb1 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxi6:amd64 libxi6 2:1.8-1+b1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxkbcommon-x11-0:amd64 libxkbcommon-x11-0 1.5.0-1 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.5.0-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb12u1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.2-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libyuv0:amd64 libyuv0 0.0~git20230123.b2528b0-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mhap mhap 2.1.3+dfsg-3 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-5+b1 install ok installed mummer mummer 3.23+dfsg-8 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed netbase netbase 6.4 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.9+9-1~deb12u1 install ok installed openssl openssl 3.0.11-1~deb12u2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed procps procps 2:4.0.2-3 install ok installed prodigal prodigal 1:2.6.3-6 install ok installed psmisc psmisc 23.6-1 install ok installed publicsuffix publicsuffix 20230209.2326-1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-attr python3-attr 22.2.0-1 install ok installed python3-bs4 python3-bs4 4.11.2-2 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-html5lib python3-html5lib 1.1-3 install ok installed python3-iniconfig python3-iniconfig 1.1.1-2 install ok installed python3-jdcal python3-jdcal 1.0-1.3 install ok installed python3-joblib python3-joblib 1.2.0-4 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-lxml:amd64 python3-lxml 4.9.2-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-more-itertools python3-more-itertools 8.10.0-2 install ok installed python3-numpy python3-numpy 1:1.24.2-1 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openpyxl python3-openpyxl 3.0.9-1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-pil:amd64 python3-pil 9.4.0-1.1+b1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-pluggy python3-pluggy 1.0.0+repack-1 install ok installed python3-psutil python3-psutil 5.9.4-1+b1 install ok installed python3-py python3-py 1.11.0-1 install ok installed python3-pygments python3-pygments 2.14.0+dfsg-1 install ok installed python3-pymummer python3-pymummer 0.11.0-3 install ok installed python3-pysam python3-pysam 0.20.0+ds-3+b1 install ok installed python3-pytest python3-pytest 7.2.1-2 install ok installed python3-simplejson python3-simplejson 3.18.3-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-soupsieve python3-soupsieve 2.3.2-1 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-yaml python3-yaml 6.0-3+b2 install ok installed python3.11 python3.11 3.11.2-6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6 install ok installed qt5-gtk-platformtheme:amd64 qt5-gtk-platformtheme 5.15.8+dfsg-11 install ok installed qttranslations5-l10n qttranslations5-l10n 5.15.8-2 install ok installed qtwayland5:amd64 qtwayland5 5.15.8-2 install ok installed readline-common readline-common 8.2-1.3 install ok installed samtools samtools 1.16.1-1 install ok installed sed sed 4.9-1 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed spades spades 3.15.5+dfsg-2 install ok installed systemd systemd 252.19-1~deb12u1 install ok installed systemd-sysv systemd-sysv 252.19-1~deb12u1 install ok installed systemd-timesyncd systemd-timesyncd 252.19-1~deb12u1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-5+deb12u1 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xkb-data xkb-data 2.35.1-1 install ok installed xz-utils xz-utils 5.4.1-0.2 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'remove', 'adwaita-icon-theme', 'aglfn', 'alsa-topology-conf', 'alsa-ucm-conf', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'binfmt-support', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libbamtools2.5.2:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfdisk1:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm15:amd64', 'liblua5.4-0:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmd4c0:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5qml5:amd64', 'libqt5qmlmodels5:amd64', 'libqt5quick5:amd64', 'libqt5svg5:amd64', 'libqt5waylandclient5:amd64', 'libqt5waylandcompositor5:amd64', 'libqt5widgets5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw-java', 'libssw0:amd64', 'libsvtav1enc1:amd64', 'libsystemd-shared:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mailcap', 'media-types', 'mhap', 'mime-support', 'mummer', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'procps', 'prodigal', 'psmisc', 'publicsuffix', 'python3', 'python3-attr', 'python3-bs4', 'python3-chardet', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-py', 'python3-pygments', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'qt5-gtk-platformtheme:amd64', 'qttranslations5-l10n', 'qtwayland5:amd64', 'readline-common', 'samtools', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'x11-common', 'xdg-user-dirs', 'xkb-data', 'xz-utils', 'circlator'] 1m18.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adwaita-icon-theme aglfn alsa-topology-conf alsa-ucm-conf at-spi2-common at-spi2-core bamtools binfmt-support bwa bzip2 ca-certificates ca-certificates-java canu circlator dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre-headless dmsetup fastaq fastjar file fontconfig fontconfig-config fonts-dejavu-core gawk gnuplot gnuplot-data gnuplot-qt gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme jaligner jarwrapper java-common krb5-locales libabsl20220623 libaom3 libapache-pom-java libapparmor1 libargon2-1 libasound2 libasound2-data libatinject-jsr330-api-java libatk-bridge2.0-0 libatk1.0-0 libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libbamtools2.5.2 libblas3 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcolord2 libcommons-compress-java libcommons-parent-java libcryptsetup12 libcups2 libcurl3-gnutls libdatrie1 libdav1d6 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 liberror-prone-java libevdev2 libexpat1 libfastutil-java libfdisk1 libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgbm1 libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0 libgtk-3-bin libgtk-3-common libguava-java libgudev-1.0-0 libharfbuzz0b libheif1 libhts3 libhtscodecs2 libice6 libicu72 libimagequant0 libinput-bin libinput10 libip4tc2 libjbig0 libjpeg62-turbo libjson-c5 libjsoncpp25 libjsr305-java libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm15 liblua5.4-0 libmagic-mgc libmagic1 libmd4c0 libmpfr6 libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libnlopt0 libnotify4 libnsl2 libnspr4 libnss-systemd libnss3 libnuma1 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpcsclite1 libperl5.36 libpipeline1 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5qml5 libqt5qmlmodels5 libqt5quick5 libqt5svg5 libqt5waylandclient5 libqt5waylandcompositor5 libqt5widgets5 libquadmath0 libraqm0 librav1e0 libreadline8 librsvg2-2 librsvg2-common librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsqlite3-0 libssh2-1 libssl3 libssw-java libssw0 libsvtav1enc1 libsystemd-shared libthai-data libthai0 libtiff6 libtirpc-common libtirpc3 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1 libwxgtk3.2-1 libx11-6 libx11-data libx11-xcb1 libx265-199 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxtst6 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 mailcap media-types mhap mime-support mummer netbase openjdk-17-jre-headless openssl perl perl-modules-5.36 procps prodigal psmisc publicsuffix python3 python3-attr python3-bs4 python3-chardet python3-distutils python3-et-xmlfile python3-html5lib python3-iniconfig python3-jdcal python3-joblib python3-lib2to3 python3-lxml python3-minimal python3-more-itertools python3-numpy python3-olefile python3-openpyxl python3-packaging python3-pil python3-pkg-resources python3-pluggy python3-psutil python3-py python3-pygments python3-pymummer python3-pysam python3-pytest python3-simplejson python3-six python3-soupsieve python3-webencodings python3-yaml python3.11 python3.11-minimal qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 readline-common samtools shared-mime-info spades systemd systemd-sysv systemd-timesyncd x11-common xdg-user-dirs xkb-data xz-utils 0 upgraded, 0 newly installed, 338 to remove and 0 not upgraded. After this operation, 984 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26656 files and directories currently installed.) Removing circlator (1.5.6-7) ... Removing canu (2.0+dfsg-2+b1) ... Removing gnuplot (5.4.4+dfsg1-2) ... Removing gnuplot-qt (5.4.4+dfsg1-2+b2) ... Removing libwxgtk3.2-1:amd64 (3.2.2+dfsg-2) ... Removing qt5-gtk-platformtheme:amd64 (5.15.8+dfsg-11) ... Removing gnuplot-data (5.4.4+dfsg1-2) ... Removing aglfn (1.7+git20191031.4036a9c-2) ... Removing alsa-topology-conf (1.2.5.1-2) ... Removing alsa-ucm-conf (1.2.8-1) ... Removing at-spi2-core (2.46.0-5) ... Removing spades (3.15.5+dfsg-2) ... Removing bamtools (2.5.2+dfsg-4) ... Removing mhap (2.1.3+dfsg-3) ... Removing jarwrapper (0.78) ... Removing binfmt-support (2.2.2-2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing bwa (0.7.17-7+b2) ... Removing bzip2 (1.0.8-5+b1) ... Removing jaligner (1.0+dfsg-10) ... Removing default-jre-headless (2:1.17-74) ... Removing openjdk-17-jre-headless:amd64 (17.0.9+9-1~deb12u1) ... Removing ca-certificates-java (20230710~deb12u1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libgtk-3-bin (3.24.38-2~deb12u1) ... Removing gsettings-desktop-schemas (43.0-1) ... Removing systemd-timesyncd (252.19-1~deb12u1) ... Removing python3-pymummer (0.11.0-3) ... Removing fastaq (3.17.0-5) ... Removing fastjar (2:0.98-7) ... Removing file (1:5.44-3) ... Removing qtwayland5:amd64 (5.15.8-2) ... Removing libqt5waylandcompositor5:amd64 (5.15.8-2) ... Removing librsvg2-common:amd64 (2.54.7+dfsg-1~deb12u1) ... Removing librsvg2-2:amd64 (2.54.7+dfsg-1~deb12u1) ... Removing libqt5waylandclient5:amd64 (5.15.8-2) ... Removing libgd3:amd64 (2.3.3-9) ... Removing mummer (3.23+dfsg-8) ... Removing gawk (1:5.2.1-2) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing java-common (0.74) ... Removing krb5-locales (1.20.1-2+deb12u1) ... Removing libavif15:amd64 (0.11.1-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-1) ... Removing libheif1:amd64 (1.15.1-1) ... Removing libaom3:amd64 (3.6.0-1) ... Removing libcommons-compress-java (1.22-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libasound2:amd64 (1.2.8-1+b1) ... Removing libasound2-data (1.2.8-1) ... Removing libqt5printsupport5:amd64 (5.15.8+dfsg-11) ... Removing libbamtools2.5.2:amd64 (2.5.2+dfsg-4) ... Removing python3-numpy (1:1.24.2-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing python3-pil:amd64 (9.4.0-1.1+b1) ... Removing libraqm0:amd64 (0.7.0-4.1) ... Removing samtools (1.16.1-1) ... Removing libdav1d6:amd64 (1.0.0-2) ... Removing libqt5quick5:amd64 (5.15.8+dfsg-3) ... Removing libqt5qmlmodels5:amd64 (5.15.8+dfsg-3) ... Removing libqt5qml5:amd64 (5.15.8+dfsg-3) ... Removing libde265-0:amd64 (1.0.11-1+deb12u1) ... Removing libnotify4:amd64 (0.8.1-1) ... Removing libgdk-pixbuf2.0-bin (2.42.10+dfsg-1+b1) ... Removing libqt5svg5:amd64 (5.15.8-3) ... Removing libqt5widgets5:amd64 (5.15.8+dfsg-11) ... Removing libwxbase3.2-1:amd64 (3.2.2+dfsg-2) ... Removing python3-simplejson (3.18.3-1) ... Removing python3-distutils (3.11.2-3) ... Removing libfastutil-java (8.5.11+dfsg-1) ... Removing libfilesys-df-perl (0.92-7+b1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libglib2.0-data (2.74.6-2) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libgpm2:amd64 (1.20.7-10+b1) ... Removing python3-openpyxl (3.0.9-1) ... Removing python3-lxml:amd64 (4.9.2-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Removing libjsoncpp25:amd64 (1.9.5-4) ... Removing libldap-common (2.5.13+dfsg-5) ... Removing liblua5.4-0:amd64 (5.4.4-3) ... Removing libmagic1:amd64 (1:5.44-3) ... Removing libmagic-mgc (1:5.44-3) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libncurses6:amd64 (6.4-4) ... Removing python3-joblib (1.2.0-4) ... Removing libnlopt0:amd64 (2.7.1-5) ... Removing libnss3:amd64 (2:3.87.1-1) ... Removing libnspr4:amd64 (2:4.35-1) ... Removing libnss-systemd:amd64 (252.19-1~deb12u1) ... Removing libx265-199:amd64 (3.5-2+b1) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libpcre2-32-0:amd64 (10.42-1) ... Removing libpcsclite1:amd64 (1.9.9-2) ... Removing libpipeline1:amd64 (1.5.7-1) ... Removing libquadmath0:amd64 (12.2.0-14) ... Removing librav1e0:amd64 (0.5.1-6) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Removing libsigsegv2:amd64 (2.14-1) ... Removing openssl (3.0.11-1~deb12u2) ... Removing libssw-java (1.1-13) ... Removing libssw0:amd64 (1.1-13) ... Removing libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Removing libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Removing libxtst6:amd64 (2:1.2.3-1.1) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Removing python3-yaml (6.0-3+b2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing netbase (6.4) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Removing prodigal (1:2.6.3-6) ... Removing psmisc (23.6-1) ... Removing publicsuffix (20230209.2326-1) ... Removing python3-pytest (7.2.1-2) ... Removing python3-attr (22.2.0-1) ... Removing python3-bs4 (4.11.2-2) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-html5lib (1.1-3) ... Removing python3-iniconfig (1.1.1-2) ... Removing python3-jdcal (1.0-1.3) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-more-itertools (8.10.0-2) ... Removing python3-olefile (0.46-3) ... Removing python3-packaging (23.0-1) ... Removing python3-py (1.11.0-1) ... Removing python3-pygments (2.14.0+dfsg-1) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-pluggy (1.0.0+repack-1) ... Removing python3-psutil (5.9.4-1+b1) ... Removing python3-pysam (0.20.0+ds-3+b1) ... Removing python3-six (1.16.0-4) ... Removing python3-soupsieve (2.3.2-1) ... Removing python3-webencodings (0.5.1-5) ... Removing qttranslations5-l10n (5.15.8-2) ... Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.4.1-0.2) ... Removing libgtk-3-0:amd64 (3.24.38-2~deb12u1) ... Removing adwaita-icon-theme (43-1) ... Removing libatk-bridge2.0-0:amd64 (2.46.0-5) ... Removing libatk1.0-0:amd64 (2.46.0-5) ... Removing at-spi2-common (2.46.0-5) ... Removing libgtk-3-common (3.24.38-2~deb12u1) ... Removing dconf-gsettings-backend:amd64 (0.40.0-4) ... Removing dconf-service (0.40.0-4) ... Removing dbus-user-session (1.14.10-1~deb12u1) ... Removing libpam-systemd:amd64 (252.19-1~deb12u1) ... Removing dbus (1.14.10-1~deb12u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-daemon (1.14.10-1~deb12u1) ... Removing dbus-bin (1.14.10-1~deb12u1) ... Removing dbus-session-bus-common (1.14.10-1~deb12u1) ... Removing dbus-system-bus-common (1.14.10-1~deb12u1) ... Removing systemd-sysv (252.19-1~deb12u1) ... Removing systemd (252.19-1~deb12u1) ... Removing libcryptsetup12:amd64 (2:2.6.1-4~deb12u1) ... Removing libqt5gui5:amd64 (5.15.8+dfsg-11) ... Removing libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.12+ds-1) ... Removing fontconfig (2.14.1-4) ... Removing gtk-update-icon-cache (3.24.38-2~deb12u1) ... Removing hicolor-icon-theme (0.17-2) ... Removing libsystemd-shared:amd64 (252.19-1~deb12u1) ... Removing libapparmor1:amd64 (3.0.8-3) ... Removing libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... Removing libatspi2.0-0:amd64 (2.46.0-5) ... Removing libcups2:amd64 (2.4.2-3+deb12u5) ... Removing libavahi-client3:amd64 (0.8-10) ... Removing libavahi-common3:amd64 (0.8-10) ... Removing libavahi-common-data:amd64 (0.8-10) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u4) ... Removing libxcb-icccm4:amd64 (0.4.1-1.1) ... Removing libxcb-render-util0:amd64 (0.3.9-1+b1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libcairo-gobject2:amd64 (1.16.0-7) ... Removing libcairo2:amd64 (1.16.0-7) ... Removing libcolord2:amd64 (1.4.6-2.2) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libqt5network5:amd64 (5.15.8+dfsg-11) ... Removing libqt5dbus5:amd64 (5.15.8+dfsg-11) ... Removing libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Removing libdconf1:amd64 (0.40.0-4) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libqt5core5a:amd64 (5.15.8+dfsg-11) ... Removing libdouble-conversion3:amd64 (3.2.1-1) ... Removing libgl1:amd64 (1.6.0-1) ... Removing libglx0:amd64 (1.6.0-1) ... Removing libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Removing libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... Removing libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Removing libegl1:amd64 (1.6.0-1) ... Removing libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... Removing libgbm1:amd64 (22.3.6-1+deb12u1) ... Removing libdrm-intel1:amd64 (2.4.114-1+b1) ... Removing libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Removing libdrm-radeon1:amd64 (2.4.114-1+b1) ... Removing libllvm15:amd64 (1:15.0.6-4+b1) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libelf1:amd64 (0.188-2.1) ... Removing libepoxy0:amd64 (1.5.10-1) ... Removing libinput10:amd64 (1.22.1-1) ... Removing libinput-bin (1.22.1-1) ... Removing libevdev2:amd64 (1.13.0+dfsg-1) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6) ... Removing libfdisk1:amd64 (2.38.1-5+b1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Removing libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... Removing shared-mime-info (2.2-1) ... Removing libwacom9:amd64 (2.6.0-1) ... Removing libglvnd0:amd64 (1.6.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Removing libgudev-1.0-0:amd64 (237-2) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libip4tc2:amd64 (1.8.9-2) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing libjson-c5:amd64 (0.16-2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkmod2:amd64 (30+20221128-1) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libmd4c0:amd64 (0.4.8-1) ... Removing libmtdev1:amd64 (1.1.6-1) ... Removing procps (2:4.0.2-3) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libpcre2-16-0:amd64 (10.42-1) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libproc2-0:amd64 (2:4.0.2-3) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing python3-minimal (3.11.2-1+b1) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libsensors5:amd64 (1:3.6.0-7.1) ... Removing libsensors-config (1:3.6.0-7.1) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libthai-data (0.1.29-1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libwacom-common (2.6.0-1) ... Removing libwayland-cursor0:amd64 (1.21.0-1) ... Removing libwayland-client0:amd64 (1.21.0-1) ... Removing libwayland-egl1:amd64 (1.21.0-1) ... Removing libwayland-server0:amd64 (1.21.0-1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb-dri2-0:amd64 (1.15-1) ... Removing libxcb-dri3-0:amd64 (1.15-1) ... Removing libxcb-glx0:amd64 (1.15-1) ... Removing libxcb-image0:amd64 (0.4.0-2) ... Removing libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Removing libxcb-present0:amd64 (1.15-1) ... Removing libxcb-randr0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shape0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-sync1:amd64 (1.15-1) ... Removing libxcb-util1:amd64 (0.4.0-1+b1) ... Removing libxcb-xfixes0:amd64 (1.15-1) ... Removing libxcb-xinerama0:amd64 (1.15-1) ... Removing libxcb-xinput0:amd64 (1.15-1) ... Removing libxkbcommon-x11-0:amd64 (1.5.0-1) ... Removing libxcb-xkb1:amd64 (1.15-1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxdamage1:amd64 (1:1.1.6-1) ... Removing libxrandr2:amd64 (2:1.5.2-2+b1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxi6:amd64 (2:1.8-1+b1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxkbcommon0:amd64 (1.5.0-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.12-3.1) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xkb-data (2.35.1-1) ... Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing fonts-dejavu-core (2.37-6) ... Removing libfreetype6:amd64 (2.12.1+dfsg-5) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing libdrm2:amd64 (2.4.114-1+b1) ... Removing libdrm-common (2.4.114-1) ... Removing python3.11-minimal (3.11.2-6) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libglib2.0-0:amd64 (2.74.6-2) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libpython3.11-minimal:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libssl3:amd64 (3.0.11-1~deb12u2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libguava-java (31.1-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing dmsetup (2:1.02.185-2) ... Removing libdevmapper1.02.1:amd64 (2:1.02.185-2) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... 1m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'remove', 'adwaita-icon-theme', 'aglfn', 'alsa-topology-conf', 'alsa-ucm-conf', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'binfmt-support', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libbamtools2.5.2:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfdisk1:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm15:amd64', 'liblua5.4-0:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmd4c0:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5qml5:amd64', 'libqt5qmlmodels5:amd64', 'libqt5quick5:amd64', 'libqt5svg5:amd64', 'libqt5waylandclient5:amd64', 'libqt5waylandcompositor5:amd64', 'libqt5widgets5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw-java', 'libssw0:amd64', 'libsvtav1enc1:amd64', 'libsystemd-shared:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mailcap', 'media-types', 'mhap', 'mime-support', 'mummer', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'procps', 'prodigal', 'psmisc', 'publicsuffix', 'python3', 'python3-attr', 'python3-bs4', 'python3-chardet', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-py', 'python3-pygments', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'qt5-gtk-platformtheme:amd64', 'qttranslations5-l10n', 'qtwayland5:amd64', 'readline-common', 'samtools', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'x11-common', 'xdg-user-dirs', 'xkb-data', 'xz-utils', 'circlator'] 1m18.2s INFO: Running scripts post_remove 1m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_remove_exceptions'] 1m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_remove_exceptions'] 1m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--purge', 'adwaita-icon-theme', 'aglfn', 'alsa-topology-conf', 'alsa-ucm-conf', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'binfmt-support', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libbamtools2.5.2:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfdisk1:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm15:amd64', 'liblua5.4-0:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmd4c0:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5qml5:amd64', 'libqt5qmlmodels5:amd64', 'libqt5quick5:amd64', 'libqt5svg5:amd64', 'libqt5waylandclient5:amd64', 'libqt5waylandcompositor5:amd64', 'libqt5widgets5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw-java', 'libssw0:amd64', 'libsvtav1enc1:amd64', 'libsystemd-shared:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mailcap', 'media-types', 'mhap', 'mime-support', 'mummer', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'procps', 'prodigal', 'psmisc', 'publicsuffix', 'python3', 'python3-attr', 'python3-bs4', 'python3-chardet', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-py', 'python3-pygments', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'qt5-gtk-platformtheme:amd64', 'qttranslations5-l10n', 'qtwayland5:amd64', 'readline-common', 'samtools', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'x11-common', 'xdg-user-dirs', 'xkb-data', 'xz-utils'] 1m19.2s DUMP: (Reading database ... 6240 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (43-1) ... dpkg: warning: ignoring request to remove aglfn which isn't installed dpkg: warning: ignoring request to remove alsa-topology-conf which isn't installed dpkg: warning: ignoring request to remove alsa-ucm-conf which isn't installed dpkg: warning: ignoring request to remove at-spi2-common which isn't installed Purging configuration files for at-spi2-core (2.46.0-5) ... dpkg: warning: ignoring request to remove bamtools which isn't installed Purging configuration files for binfmt-support (2.2.2-2) ... dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20230710~deb12u1) ... dpkg: warning: ignoring request to remove canu which isn't installed Purging configuration files for dbus (1.14.10-1~deb12u1) ... rmdir: failed to remove '/var/run/dbus': Directory not empty rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.14.10-1~deb12u1) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed Purging configuration files for dbus-user-session (1.14.10-1~deb12u1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dmsetup which isn't installed dpkg: warning: ignoring request to remove fastaq which isn't installed dpkg: warning: ignoring request to remove fastjar which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.14.1-4) ... Purging configuration files for fontconfig-config (2.14.1-4) ... Purging configuration files for fonts-dejavu-core (2.37-6) ... Purging configuration files for gawk (1:5.2.1-2) ... dpkg: warning: ignoring request to remove gnuplot which isn't installed dpkg: warning: ignoring request to remove gnuplot-data which isn't installed dpkg: warning: ignoring request to remove gnuplot-qt which isn't installed dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove jaligner which isn't installed dpkg: warning: ignoring request to remove jarwrapper which isn't installed Purging configuration files for java-common (0.74) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libabsl20220623 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libargon2-1 which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libavif15 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.2 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcryptsetup12 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d6 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevmapper1.02.1 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libevdev2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfastutil-java which isn't installed dpkg: warning: ignoring request to remove libfdisk1 which isn't installed dpkg: warning: ignoring request to remove libfilesys-df-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-bin which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Purging configuration files for libgtk-3-0:amd64 (3.24.38-2~deb12u1) ... dpkg: warning: ignoring request to remove libgtk-3-bin which isn't installed Purging configuration files for libgtk-3-common (3.24.38-2~deb12u1) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libgudev-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libinput-bin which isn't installed dpkg: warning: ignoring request to remove libinput10 which isn't installed dpkg: warning: ignoring request to remove libip4tc2 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-c5 which isn't installed dpkg: warning: ignoring request to remove libjsoncpp25 which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkmod2 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed Purging configuration files for libldap-common (2.5.13+dfsg-5) ... dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm15 which isn't installed dpkg: warning: ignoring request to remove liblua5.4-0 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.44-3) ... dpkg: warning: ignoring request to remove libmd4c0 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmtdev1 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed Purging configuration files for libnss-systemd:amd64 (252.19-1~deb12u1) ... dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-16-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-32-0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libqt5core5a:amd64 (5.15.8+dfsg-11) ... dpkg: warning: ignoring request to remove libqt5dbus5 which isn't installed Purging configuration files for libqt5gui5:amd64 (5.15.8+dfsg-11) ... dpkg: warning: ignoring request to remove libqt5network5 which isn't installed dpkg: warning: ignoring request to remove libqt5printsupport5 which isn't installed dpkg: warning: ignoring request to remove libqt5qml5 which isn't installed dpkg: warning: ignoring request to remove libqt5qmlmodels5 which isn't installed dpkg: warning: ignoring request to remove libqt5quick5 which isn't installed dpkg: warning: ignoring request to remove libqt5svg5 which isn't installed dpkg: warning: ignoring request to remove libqt5waylandclient5 which isn't installed dpkg: warning: ignoring request to remove libqt5waylandcompositor5 which isn't installed dpkg: warning: ignoring request to remove libqt5widgets5 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove librav1e0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librsvg2-2 which isn't installed dpkg: warning: ignoring request to remove librsvg2-common which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg-10) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-7.1) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libssw-java which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc1 which isn't installed dpkg: warning: ignoring request to remove libsystemd-shared which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libwacom-common which isn't installed dpkg: warning: ignoring request to remove libwacom9 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwxbase3.2-1 which isn't installed dpkg: warning: ignoring request to remove libwxgtk3.2-1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libx265-199 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-icccm4 which isn't installed dpkg: warning: ignoring request to remove libxcb-image0 which isn't installed dpkg: warning: ignoring request to remove libxcb-keysyms1 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render-util0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-util1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinerama0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinput0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xkb1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon-x11-0 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (10.0.0) ... dpkg: warning: ignoring request to remove mhap which isn't installed dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove mummer which isn't installed Purging configuration files for netbase (6.4) ... Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.9+9-1~deb12u1) ... Purging configuration files for openssl (3.0.11-1~deb12u2) ... Purging configuration files for perl (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed Purging configuration files for procps (2:4.0.2-3) ... dpkg: warning: ignoring request to remove prodigal which isn't installed Purging configuration files for psmisc (23.6-1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-iniconfig which isn't installed dpkg: warning: ignoring request to remove python3-jdcal which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pymummer which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6) ... dpkg: warning: ignoring request to remove qt5-gtk-platformtheme which isn't installed dpkg: warning: ignoring request to remove qttranslations5-l10n which isn't installed dpkg: warning: ignoring request to remove qtwayland5 which isn't installed Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove samtools which isn't installed Purging configuration files for shared-mime-info (2.2-1) ... dpkg: warning: ignoring request to remove spades which isn't installed Purging configuration files for systemd (252.19-1~deb12u1) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed Purging configuration files for systemd-timesyncd (252.19-1~deb12u1) ... Purging configuration files for x11-common (1:7.7+23) ... Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed 1m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--purge', 'adwaita-icon-theme', 'aglfn', 'alsa-topology-conf', 'alsa-ucm-conf', 'at-spi2-common', 'at-spi2-core', 'bamtools', 'binfmt-support', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libbamtools2.5.2:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'liberror-prone-java', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfdisk1:amd64', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjsoncpp25:amd64', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmod2:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm15:amd64', 'liblua5.4-0:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmd4c0:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5qml5:amd64', 'libqt5qmlmodels5:amd64', 'libqt5quick5:amd64', 'libqt5svg5:amd64', 'libqt5waylandclient5:amd64', 'libqt5waylandcompositor5:amd64', 'libqt5widgets5:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw-java', 'libssw0:amd64', 'libsvtav1enc1:amd64', 'libsystemd-shared:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwacom-common', 'libwacom9:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwxbase3.2-1:amd64', 'libwxgtk3.2-1:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mailcap', 'media-types', 'mhap', 'mime-support', 'mummer', 'netbase', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'procps', 'prodigal', 'psmisc', 'publicsuffix', 'python3', 'python3-attr', 'python3-bs4', 'python3-chardet', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-more-itertools', 'python3-numpy', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-psutil', 'python3-py', 'python3-pygments', 'python3-pymummer', 'python3-pysam', 'python3-pytest', 'python3-simplejson', 'python3-six', 'python3-soupsieve', 'python3-webencodings', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'qt5-gtk-platformtheme:amd64', 'qttranslations5-l10n', 'qtwayland5:amd64', 'readline-common', 'samtools', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'x11-common', 'xdg-user-dirs', 'xkb-data', 'xz-utils'] 1m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--purge', 'circlator'] 1m19.2s DUMP: dpkg: warning: ignoring request to remove circlator which isn't installed 1m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--purge', 'circlator'] 1m19.2s INFO: Running scripts post_purge 1m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_purge_exceptions'] 1m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_purge_exceptions'] 1m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--purge', '--pending'] 1m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--purge', '--pending'] 1m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--remove', '--pending'] 1m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg', '--remove', '--pending'] 1m19.2s INFO: Running scripts post_test 1m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_test_exceptions'] 1m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'tmp/scripts/post_test_exceptions'] 1m19.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 1m19.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 1m20.5s DEBUG: No broken symlinks as far as we can find. 1m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-divert', '--list'] 1m20.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'dpkg-divert', '--list'] 1m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'clean'] 1m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l', 'apt-get', 'clean'] 1m20.6s DEBUG: Recording chroot state 1m21.2s INFO: Warning: Package purging left files on system: /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/lib/systemd/coredump/ not owned /var/lib/systemd/pstore/ not owned /var/log/private/ not owned 1m21.3s INFO: PASS: Installation and purging test. 1m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/shm'] 1m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/shm'] 1m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/console'] 1m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/console'] 1m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/ptmx'] 1m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/ptmx'] 1m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/pts'] 1m21.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/dev/pts'] 1m21.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/proc'] 1m21.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l/proc'] 1m21.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 1m21.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuw_4z84l'] 1m21.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpuw_4z84l 1m21.8s INFO: PASS: All tests. 1m21.8s INFO: piuparts run ends. ret=0 End: 2024-01-15 17:02:31 GMT