Start: 2024-04-22 05:53:35 GMT Package: gbrowse-data Source: gbrowse Version: 2.56+dfsg-11 Installed-Size: 2828 Maintainer: Debian Med Packaging Team Architecture: all Recommends: gbrowse Description: Sample data to use GBrowse Homepage: http://gmod.org/wiki/GBrowse Description-md5: 10ce158783e67e4316b3c5112e31af99 Tag: field::biology, field::biology:bioinformatics, role::examples Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-data_2.56+dfsg-11_all.deb Size: 1235668 MD5sum: e8543e3eeb1f97f067ac83f41c15e142 SHA256: d8809914dfca5d5b38a30f1f7d9495bea9b0e7afe4fcd06ed2cb4f6f9788a3b7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt gbrowse-data=2.56+dfsg-11 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt gbrowse-data=2.56+dfsg-11 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpgpq0h77j 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpgpq0h77j 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpgpq0h77j/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'clean'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'clean'] 0m3.7s DEBUG: Recording chroot state 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-divert', '--list'] 0m4.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-divert', '--list'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 0m5.9s DEBUG: No broken symlinks as far as we can find. 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-cache', 'policy'] 0m6.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-cache', 'policy'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-cache', 'policy', 'gbrowse-data'] 0m6.9s DUMP: gbrowse-data: Installed: (none) Candidate: 2.56+dfsg-11 Version table: 2.56+dfsg-11 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-cache', 'policy', 'gbrowse-data'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', '-y', 'install', 'gbrowse-data=2.56+dfsg-11'] 1m36.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation2 fonts-noto-mono fonts-urw-base35 fsa gawk gbrowse ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign krb5-locales lagan libabsl20220623 libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasync-interrupt-perl libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-eutilities-perl libbio-featureio-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0.8 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d6 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libencode-perl liberror-perl libev-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd-svg-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpfr6 libmunge2 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl2 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcsclite1 libperl5.36 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libproc2-0 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-ipv6-perl librole-tiny-perl librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl3 libstaden-read14 libstatistics-descriptive-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1 libtask-weaken-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc3 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvm-ec2-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxstring-perl libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.36 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python3 python3-minimal python3.11 python3.11-minimal rake raxml readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xz-utils zip Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom groff-base gmap fasta3 trnascan-se blends-doc bowtie-examples bzip2-doc clustalx seaview default-dbus-session-bus | dbus-session-bus default-jre emboss-doc emboss-test embassy fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gbrowse-calign libfile-nfslock-perl gsfonts graphviz-doc hmmer-doc libevent-perl libio-async-perl libpoe-perl libasound2-plugins alsa-utils libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user libhtml-element-extended-perl libhwloc-contrib-plugins liblcms2-utils libcrypt-ssleay-perl libscalar-number-perl pciutils pcscd libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libmime-lite-perl libnet-jabber-perl libdevel-lexalias-perl libbusiness-isbn-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl menu-l10n gksu | kde-cli-tools | ktsuss mustang-testdata gnuplot opencl-icd openjdk-17-demo openjdk-17-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl man-browser debhelper phylip-doc blast2 poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binutils binfmt-support readline-doc ri ruby-dev bundler cwltool sqlite3-doc boxshade t-coffee-examples pymol rasmol wise-doc Recommended packages: blast2 The following NEW packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation2 fonts-noto-mono fonts-urw-base35 fsa gawk gbrowse gbrowse-data ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign krb5-locales lagan libabsl20220623 libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasync-interrupt-perl libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-eutilities-perl libbio-featureio-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0.8 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d6 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libencode-perl liberror-perl libev-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd-svg-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpfr6 libmunge2 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl2 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcsclite1 libperl5.36 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libproc2-0 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-ipv6-perl librole-tiny-perl librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl3 libstaden-read14 libstatistics-descriptive-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1 libtask-weaken-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc3 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvm-ec2-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxstring-perl libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.36 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python3 python3-minimal python3.11 python3.11-minimal rake raxml readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xz-utils zip 0 upgraded, 507 newly installed, 0 to remove and 0 not upgraded. Need to get 391 MB of archives. After this operation, 1589 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 dbus-bin amd64 1.14.10-1~deb12u1 [105 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 dbus-session-bus-common all 1.14.10-1~deb12u1 [78.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libapparmor1 amd64 3.0.8-3 [41.2 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 dbus-daemon amd64 1.14.10-1~deb12u1 [184 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 dbus-system-bus-common all 1.14.10-1~deb12u1 [79.3 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 dbus amd64 1.14.10-1~deb12u1 [97.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libapr1 amd64 1.7.2-3 [102 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libaprutil1 amd64 1.6.3-1 [87.8 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-1 [13.6 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libaprutil1-ldap amd64 1.6.3-1 [11.8 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:27 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u5 [390 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 liblua5.3-0 amd64 5.3.6-2 [123 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 apache2-bin amd64 2.4.57-2 [1364 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 apache2-data all 2.4.57-2 [160 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 apache2-utils amd64 2.4.57-2 [202 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 apache2 amd64 2.4.57-2 [215 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:63 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 krb5-locales all 1.20.1-2+deb12u1 [62.7 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2+deb12u2 [990 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 xz-utils amd64 5.4.1-0.2 [471 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 alsa-topology-conf all 1.2.5.1-2 [15.2 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 alsa-ucm-conf all 1.2.8-1 [51.7 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 bedtools amd64 2.30.0+dfsg-3 [665 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:90 http://deb.debian.org/debian bookworm/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libtest-differences-perl all 0.69-1 [18.9 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 bioperl all 1.7.8-1 [246 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libio-pty-perl amd64 1:1.17-1 [34.9 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libipc-run-perl all 20220807.0-1 [104 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libfile-sort-perl all 1.01-3 [21.3 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libbio-perl-run-perl all 1.7.3-9 [605 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libbio-tools-run-alignment-clustalw-perl all 1.7.4-3 [24.6 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libfile-slurp-tiny-perl all 0.004-2 [7592 B] Get:109 http://deb.debian.org/debian bookworm/main amd64 libtree-dagnode-perl all 1.32-1 [61.7 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:111 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libencode-perl amd64 3.19-1+b1 [1416 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:127 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.68-1 [186 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libxml-parser-perl amd64 2.46-4 [201 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:137 http://deb.debian.org/debian bookworm/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libxml-dom-xpath-perl all 0.14-4 [9352 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 libbio-featureio-perl all 1.6.905-2 [53.2 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libxml-twig-perl all 1:3.52-2 [181 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Get:149 http://deb.debian.org/debian bookworm/main amd64 libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libtext-csv-perl all 2.02-2 [110 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-expat-perl all 0.51-2 [11.1 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libbio-eutilities-perl all 1.77-2 [124 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libbio-tools-run-remoteblast-perl all 1.7.3-3 [17.5 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libfcgi0ldbl amd64 2.4.2-2 [26.1 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libfcgi-perl amd64 0.82+ds-2 [25.2 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libio-sessiondata-perl all 1.03-3 [6316 B] Get:161 http://deb.debian.org/debian bookworm/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:164 http://deb.debian.org/debian bookworm/main amd64 libmailtools-perl all 2.21-2 [95.6 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libmime-tools-perl all 5.510-1 [213 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libtask-weaken-perl all 1.06-2 [9364 B] Get:167 http://deb.debian.org/debian bookworm/main amd64 libsoap-lite-perl all 1.27-3 [239 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:170 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u5 [245 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 fonts-liberation2 all 2.1.5-1 [1479 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:185 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.10+7-1~deb12u1 [43.7 MB] Get:194 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-74 [2936 B] Get:195 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jdk-headless amd64 17.0.10+7-1~deb12u1 [71.3 MB] Get:196 http://deb.debian.org/debian bookworm/main amd64 default-jdk-headless amd64 2:1.17-74 [1108 B] Get:197 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u5 [385 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 hyphy-common all 2.5.47+dfsg-1 [586 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 hyphy-pt amd64 2.5.47+dfsg-1 [1487 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 bioperl-run all 1.7.3-9 [40.6 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 menu amd64 2.1.49 [371 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 blends-common all 0.7.5 [25.2 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 bowtie amd64 1.3.1-1+b1 [1627 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 bwa amd64 0.7.17-7+b2 [212 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 clustalo amd64 1.2.4-7 [260 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 dialign amd64 2.2.1-11 [139 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 dialign-tx-data all 1.0.2-14 [874 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 dialign-tx amd64 1.0.2-14+b1 [86.6 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1+deb12u2 [185 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 mysql-common all 5.8+1.1.0 [6636 B] Get:237 http://deb.debian.org/debian bookworm/main amd64 mariadb-common all 1:10.11.6-0+deb12u1 [24.4 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 libmariadb3 amd64 1:10.11.6-0+deb12u1 [174 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 libpq5 amd64 15.5-0+deb12u1 [187 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 emboss-lib amd64 6.6.0+dfsg-12 [2871 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 emboss-data all 6.6.0+dfsg-12 [61.1 MB] Get:242 http://deb.debian.org/debian bookworm/main amd64 emboss amd64 6.6.0+dfsg-12 [1069 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 fonts-noto-mono all 20201225-1 [402 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 libgd-perl amd64 2.76-4+b1 [132 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 libapache2-mod-perl2 amd64 2.0.12-1+b2 [879 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 libdbi-perl amd64 1.643-4 [773 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 libcgi-pm-perl all 4.55-1 [220 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 libdbd-pg-perl amd64 3.16.0-2 [209 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 libdbd-sqlite3-perl amd64 1.72-1 [179 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] Get:259 http://deb.debian.org/debian bookworm/main amd64 libbio-graphics-perl all 2.40-6 [610 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 libbio-coordinate-perl all 1.7.1-4 [56.7 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 libcgi-session-perl all 4.48-4 [118 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 libexporter-tiny-perl all 1.006000-1 [38.6 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 liblist-moreutils-xs-perl amd64 0.430-3+b1 [42.1 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 sqlite3 amd64 3.40.1-2 [353 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 libjs-prototype all 1.7.3-1 [44.3 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 libjs-scriptaculous all 1.9.0-3 [110 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 libanyevent-perl amd64 7.170-2+b3 [394 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 libanyevent-cachedns-perl all 0.08-3 [7708 B] Get:273 http://deb.debian.org/debian bookworm/main amd64 libcommon-sense-perl amd64 3.75-3 [23.0 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 libanyevent-http-perl all 2.25-2 [35.2 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 libstring-approx-perl amd64 3.28-2+b1 [38.9 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 libvm-ec2-perl all 1.28-4 [760 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 gbrowse all 2.56+dfsg-11 [2375 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 gbrowse-data all 2.56+dfsg-11 [1236 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 libgs-common all 10.0.0~dfsg-11+deb12u3 [148 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 libgs10-common all 10.0.0~dfsg-11+deb12u3 [586 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 libidn12 amd64 1.41-1 [83.8 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 libjbig2dec0 amd64 0.19-3 [67.2 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 libgs10 amd64 10.0.0~dfsg-11+deb12u3 [2465 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 ghostscript amd64 10.0.0~dfsg-11+deb12u3 [56.9 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 libcdt5 amd64 2.42.2-7+b3 [39.8 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 libcgraph6 amd64 2.42.2-7+b3 [63.2 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 libpathplan4 amd64 2.42.2-7+b3 [42.2 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 libgvc6 amd64 2.42.2-7+b3 [678 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 libgvpr2 amd64 2.42.2-7+b3 [189 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 liblab-gamut1 amd64 2.42.2-7+b3 [198 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 graphviz amd64 2.42.2-7+b3 [611 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 infernal amd64 1.1.4-1 [5523 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 javascript-common all 11+nmu1 [6260 B] Get:324 http://deb.debian.org/debian bookworm/main amd64 kalign amd64 1:3.3.5-1 [132 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 lagan amd64 2.0-9 [184 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 libipc-sharelite-perl amd64 0.17-5 [23.1 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 libcache-cache-perl all 1.08-3 [63.4 kB] Get:329 http://deb.debian.org/debian bookworm/main amd64 libace-perl amd64 1.92-11+b2 [283 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-xs-perl amd64 0.04-8+b1 [11.4 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-munkres-perl all 0.08-5 [11.3 kB] Get:332 http://deb.debian.org/debian bookworm/main amd64 libapache2-reload-perl all 0.13-4 [15.9 kB] Get:333 http://deb.debian.org/debian bookworm/main amd64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get:334 http://deb.debian.org/debian bookworm/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:335 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:336 http://deb.debian.org/debian bookworm/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:337 http://deb.debian.org/debian bookworm/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:338 http://deb.debian.org/debian bookworm/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:339 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:340 http://deb.debian.org/debian bookworm/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:341 http://deb.debian.org/debian bookworm/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:342 http://deb.debian.org/debian bookworm/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:343 http://deb.debian.org/debian bookworm/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:344 http://deb.debian.org/debian bookworm/main amd64 libtype-tiny-perl all 2.002001-1 [377 kB] Get:345 http://deb.debian.org/debian bookworm/main amd64 libarray-compare-perl all 3.0.8-1 [14.9 kB] Get:346 http://deb.debian.org/debian bookworm/main amd64 libasync-interrupt-perl amd64 1.26-1+b3 [33.3 kB] Get:347 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:348 http://deb.debian.org/debian bookworm/main amd64 libauthen-sasl-perl all 2.1600-3 [43.9 kB] Get:349 http://deb.debian.org/debian bookworm/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:350 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:351 http://deb.debian.org/debian bookworm/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:352 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:353 http://deb.debian.org/debian bookworm/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:354 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:355 http://deb.debian.org/debian bookworm/main amd64 libstaden-read14 amd64 1.14.15-1 [265 kB] Get:356 http://deb.debian.org/debian bookworm/main amd64 libbio-scf-perl amd64 1.03-6+b1 [20.1 kB] Get:357 http://deb.debian.org/debian bookworm/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB] Get:358 http://deb.debian.org/debian bookworm/main amd64 libbit-vector-perl amd64 7.4-2+b1 [142 kB] Get:359 http://deb.debian.org/debian bookworm/main amd64 libbsd-resource-perl amd64 1.2911-2+b1 [31.8 kB] Get:360 http://deb.debian.org/debian bookworm/main amd64 libcgi-fast-perl all 1:2.15-1 [12.1 kB] Get:361 http://deb.debian.org/debian bookworm/main amd64 libconvert-binary-c-perl amd64 0.84-1+b2 [272 kB] Get:362 http://deb.debian.org/debian bookworm/main amd64 libcrypt-rc4-perl all 2.02-5 [7480 B] Get:363 http://deb.debian.org/debian bookworm/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:364 http://deb.debian.org/debian bookworm/main amd64 libdate-calc-perl all 6.4-2 [191 kB] Get:365 http://deb.debian.org/debian bookworm/main amd64 libdate-calc-xs-perl amd64 6.4-2+b1 [52.0 kB] Get:366 http://deb.debian.org/debian bookworm/main amd64 libdate-manip-perl all 6.91-1 [912 kB] Get:367 http://deb.debian.org/debian bookworm/main amd64 libdbd-mysql-perl amd64 4.050-5+b1 [114 kB] Get:368 http://deb.debian.org/debian bookworm/main amd64 libdigest-perl-md5-perl all 1.9-5 [11.7 kB] Get:369 http://deb.debian.org/debian bookworm/main amd64 libev-perl amd64 4.33-2 [258 kB] Get:370 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:371 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:372 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get:373 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:374 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get:375 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:376 http://deb.debian.org/debian bookworm/main amd64 libfcgi-bin amd64 2.4.2-2 [12.9 kB] Get:377 http://deb.debian.org/debian bookworm/main amd64 libfile-slurp-perl all 9999.32-2 [26.7 kB] Get:378 http://deb.debian.org/debian bookworm/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:379 http://deb.debian.org/debian bookworm/main amd64 libfreezethaw-perl all 0.5001-3 [16.0 kB] Get:380 http://deb.debian.org/debian bookworm/main amd64 libsvg-perl all 2.87-1 [64.3 kB] Get:381 http://deb.debian.org/debian bookworm/main amd64 libgd-svg-perl all 0.33-3 [59.9 kB] Get:382 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:383 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:384 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2 [1207 kB] Get:385 http://deb.debian.org/debian bookworm/main amd64 libgpm2 amd64 1.20.7-10+b1 [14.2 kB] Get:386 http://deb.debian.org/debian bookworm/main amd64 libheap-perl all 0.80-5 [34.3 kB] Get:387 http://deb.debian.org/debian bookworm/main amd64 libset-object-perl amd64 1.42-1+b2 [37.9 kB] Get:388 http://deb.debian.org/debian bookworm/main amd64 libgraph-perl all 1:0.9726-1 [110 kB] Get:389 http://deb.debian.org/debian bookworm/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get:390 http://deb.debian.org/debian bookworm/main amd64 libxml-xpath-perl all 1.48-1 [71.0 kB] Get:391 http://deb.debian.org/debian bookworm/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get:392 http://deb.debian.org/debian bookworm/main amd64 libgts-bin amd64 0.7.6+darcs121130-5+b1 [50.3 kB] Get:393 http://deb.debian.org/debian bookworm/main amd64 libguard-perl amd64 1.023-2+b1 [15.1 kB] Get:394 http://deb.debian.org/debian bookworm/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:395 http://deb.debian.org/debian bookworm/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:396 http://deb.debian.org/debian bookworm/main amd64 libhtml-tableextract-perl all 2.15-2 [30.6 kB] Get:397 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:398 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:399 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-3~deb12u1 [13.5 kB] Get:400 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get:401 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get:402 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get:403 http://deb.debian.org/debian bookworm/main amd64 libjcode-pm-perl amd64 2.06-1.1 [30.0 kB] Get:404 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:405 http://deb.debian.org/debian bookworm/main amd64 libtypes-serialiser-perl all 1.01-1 [12.2 kB] Get:406 http://deb.debian.org/debian bookworm/main amd64 libjson-xs-perl amd64 4.030-2+b1 [92.1 kB] Get:407 http://deb.debian.org/debian bookworm/main amd64 libldap-common all 2.5.13+dfsg-5 [29.3 kB] Get:408 http://deb.debian.org/debian bookworm/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:409 http://deb.debian.org/debian bookworm/main amd64 libmath-derivative-perl all 1.01-3 [8060 B] Get:410 http://deb.debian.org/debian bookworm/main amd64 libmath-spline-perl all 0.02-4 [6808 B] Get:411 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB] Get:412 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB] Get:413 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB] Get:414 http://deb.debian.org/debian bookworm/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:415 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get:416 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:417 http://deb.debian.org/debian bookworm/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:418 http://deb.debian.org/debian bookworm/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:419 http://deb.debian.org/debian bookworm/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:420 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get:421 http://deb.debian.org/debian bookworm/main amd64 libole-storage-lite-perl all 0.20-2 [21.9 kB] Get:422 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+deb12u1 [622 kB] Get:423 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get:424 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get:425 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b1 [19.8 kB] Get:426 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:427 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:428 http://deb.debian.org/debian bookworm/main amd64 libpostscript-perl all 0.06-3.1 [26.0 kB] Get:429 http://deb.debian.org/debian bookworm/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:430 http://deb.debian.org/debian bookworm/main amd64 libref-util-perl all 0.204-2 [17.4 kB] Get:431 http://deb.debian.org/debian bookworm/main amd64 libref-util-xs-perl amd64 0.117-2+b1 [14.1 kB] Get:432 http://deb.debian.org/debian bookworm/main amd64 rubygems-integration all 1.18 [6704 B] Get:433 http://deb.debian.org/debian bookworm/main amd64 ruby3.1 amd64 3.1.2-7 [663 kB] Get:434 http://deb.debian.org/debian bookworm/main amd64 ruby-rubygems all 3.3.15-2 [293 kB] Get:435 http://deb.debian.org/debian bookworm/main amd64 ruby amd64 1:3.1 [5868 B] Get:436 http://deb.debian.org/debian bookworm/main amd64 rake all 13.0.6-3 [83.9 kB] Get:437 http://deb.debian.org/debian bookworm/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:438 http://deb.debian.org/debian bookworm/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get:439 http://deb.debian.org/debian bookworm/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get:440 http://deb.debian.org/debian bookworm/main amd64 ruby-sdbm amd64 1.0.0-5+b1 [15.4 kB] Get:441 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:442 http://deb.debian.org/debian bookworm/main amd64 libruby3.1 amd64 3.1.2-7 [5401 kB] Get:443 http://deb.debian.org/debian bookworm/main amd64 libruby amd64 1:3.1 [4972 B] Get:444 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules amd64 2.1.28+dfsg-10 [66.6 kB] Get:445 http://deb.debian.org/debian bookworm/main amd64 libset-scalar-perl all 1.29-3 [32.1 kB] Get:446 http://deb.debian.org/debian bookworm/main amd64 libsort-naturally-perl all 1.03-4 [13.1 kB] Get:447 http://deb.debian.org/debian bookworm/main amd64 libspreadsheet-writeexcel-perl all 2.40-4 [503 kB] Get:448 http://deb.debian.org/debian bookworm/main amd64 libunicode-map-perl amd64 0.112-13+b1 [144 kB] Get:449 http://deb.debian.org/debian bookworm/main amd64 libspreadsheet-parseexcel-perl all 0.6500-4~deb12u1 [126 kB] Get:450 http://deb.debian.org/debian bookworm/main amd64 libsvg-graph-perl all 0.02-4 [105 kB] Get:451 http://deb.debian.org/debian bookworm/main amd64 libtext-csv-xs-perl amd64 1.49-1 [129 kB] Get:452 http://deb.debian.org/debian bookworm/main amd64 libtext-iconv-perl amd64 1.7-8 [14.5 kB] Get:453 http://deb.debian.org/debian bookworm/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:454 http://deb.debian.org/debian bookworm/main amd64 libtype-tiny-xs-perl amd64 0.025-1 [26.4 kB] Get:455 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:456 http://deb.debian.org/debian bookworm/main amd64 libxml-filter-buffertext-perl all 1.01-7 [7136 B] Get:457 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:458 http://deb.debian.org/debian bookworm/main amd64 libxml-libxslt-perl amd64 2.002001-1 [48.4 kB] Get:459 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-writer-perl all 0.57-2 [23.1 kB] Get:460 http://deb.debian.org/debian bookworm/main amd64 libxmlrpc-lite-perl all 0.717-5 [22.4 kB] Get:461 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB] Get:462 http://deb.debian.org/debian bookworm/main amd64 libxstring-perl amd64 0.005-2+b1 [8320 B] Get:463 http://deb.debian.org/debian bookworm/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:464 http://deb.debian.org/debian bookworm/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:465 http://deb.debian.org/debian bookworm/main amd64 lynx-common all 2.9.0dev.12-1 [1166 kB] Get:466 http://deb.debian.org/debian bookworm/main amd64 lynx amd64 2.9.0dev.12-1 [637 kB] Get:467 http://deb.debian.org/debian bookworm/main amd64 mafft amd64 7.505-1 [1078 kB] Get:468 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:469 http://deb.debian.org/debian bookworm/main amd64 maq amd64 0.7.1-9 [303 kB] Get:470 http://deb.debian.org/debian bookworm/main amd64 med-config all 3.8.1 [11.1 kB] Get:471 http://deb.debian.org/debian bookworm/main amd64 muscle amd64 1:5.1.0-1 [297 kB] Get:472 http://deb.debian.org/debian bookworm/main amd64 mustang amd64 3.2.4-1 [105 kB] Get:473 http://deb.debian.org/debian bookworm/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:474 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] Get:475 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+-legacy all 2.12.0+ds-3 [13.5 kB] Get:476 http://deb.debian.org/debian bookworm/main amd64 ncoils amd64 2002-9 [22.2 kB] Get:477 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get:478 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get:479 http://deb.debian.org/debian bookworm/main amd64 pal2nal all 14.1-3 [17.8 kB] Get:480 http://deb.debian.org/debian bookworm/main amd64 paml amd64 4.9j+dfsg-4 [704 kB] Get:481 http://deb.debian.org/debian bookworm/main amd64 perl-doc all 5.36.0-7+deb12u1 [7894 kB] Get:482 http://deb.debian.org/debian bookworm/main amd64 perl-tk amd64 1:804.036-1+b2 [2009 kB] Get:483 http://deb.debian.org/debian bookworm/main amd64 pftools amd64 3.2.12-1 [24.8 MB] Get:484 http://deb.debian.org/debian bookworm/main amd64 phylip amd64 1:3.697+dfsg-2 [919 kB] Get:485 http://deb.debian.org/debian bookworm/main amd64 phyml amd64 3:3.3.20220408-3 [1103 kB] Get:486 http://deb.debian.org/debian bookworm/main amd64 poa amd64 2.0+20060928-8 [53.2 kB] Get:487 http://deb.debian.org/debian bookworm/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get:488 http://deb.debian.org/debian bookworm/main amd64 primer3 amd64 2.6.1-4 [202 kB] Get:489 http://deb.debian.org/debian bookworm/main amd64 probalign amd64 1.4-10 [70.6 kB] Get:490 http://deb.debian.org/debian bookworm/main amd64 probcons amd64 1.12-14 [119 kB] Get:491 http://deb.debian.org/debian bookworm/main amd64 proda amd64 1.0-13 [64.9 kB] Get:492 http://deb.debian.org/debian bookworm/main amd64 psmisc amd64 23.6-1 [259 kB] Get:493 http://deb.debian.org/debian bookworm/main amd64 publicsuffix all 20230209.2326-1 [126 kB] Get:494 http://deb.debian.org/debian bookworm/main amd64 raxml amd64 8.2.12+dfsg-8+b2 [1481 kB] Get:495 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Get:496 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:497 http://deb.debian.org/debian bookworm/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:498 http://deb.debian.org/debian bookworm/main amd64 ssl-cert all 1.1.2 [21.1 kB] Get:499 http://deb.debian.org/debian bookworm/main amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1032 kB] Get:500 http://deb.debian.org/debian bookworm/main amd64 tigr-glimmer amd64 3.02b-6+b1 [283 kB] Get:501 http://deb.debian.org/debian bookworm/main amd64 tm-align amd64 20190822+dfsg-2 [865 kB] Get:502 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:503 http://deb.debian.org/debian bookworm/main amd64 wise-data all 2.4.1-23 [78.2 kB] Get:504 http://deb.debian.org/debian bookworm/main amd64 wise amd64 2.4.1-23 [994 kB] Get:505 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get:506 http://deb.debian.org/debian bookworm/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] Get:507 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 391 MB in 26s (14.9 MB/s) Selecting previously unselected package libdbus-1-3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6102 files and directories currently installed.) Preparing to unpack .../00-libdbus-1-3_1.14.10-1~deb12u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../01-dbus-bin_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus-bin (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../02-dbus-session-bus-common_1.14.10-1~deb12u1_all.deb ... Unpacking dbus-session-bus-common (1.14.10-1~deb12u1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../03-libapparmor1_3.0.8-3_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../04-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus-daemon (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.14.10-1~deb12u1_all.deb ... Unpacking dbus-system-bus-common (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus (1.14.10-1~deb12u1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../08-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../09-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../10-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../11-libperl5.36_5.36.0-7+deb12u1_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u1) ... Selecting previously unselected package perl. Preparing to unpack .../12-perl_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl (5.36.0-7+deb12u1) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../13-libapr1_1.7.2-3_amd64.deb ... Unpacking libapr1:amd64 (1.7.2-3) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../14-libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../15-libaprutil1_1.6.3-1_amd64.deb ... Unpacking libaprutil1:amd64 (1.6.3-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../16-libsqlite3-0_3.40.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../17-libaprutil1-dbd-sqlite3_1.6.3-1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.6.3-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../18-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../19-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../20-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../21-libaprutil1-ldap_1.6.3-1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.6.3-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../22-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../23-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... 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Unpacking openmpi-common (4.1.4-3) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../415-openmpi-bin_4.1.4-3+b1_amd64.deb ... Unpacking openmpi-bin (4.1.4-3+b1) ... Selecting previously unselected package pal2nal. Preparing to unpack .../416-pal2nal_14.1-3_all.deb ... Unpacking pal2nal (14.1-3) ... Selecting previously unselected package paml. Preparing to unpack .../417-paml_4.9j+dfsg-4_amd64.deb ... Unpacking paml (4.9j+dfsg-4) ... Selecting previously unselected package perl-doc. Preparing to unpack .../418-perl-doc_5.36.0-7+deb12u1_all.deb ... Adding 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Unpacking perl-doc (5.36.0-7+deb12u1) ... Selecting previously unselected package perl-tk. Preparing to unpack .../419-perl-tk_1%3a804.036-1+b2_amd64.deb ... Unpacking perl-tk (1:804.036-1+b2) ... Selecting previously unselected package pftools. Preparing to unpack .../420-pftools_3.2.12-1_amd64.deb ... Unpacking pftools (3.2.12-1) ... 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Setting up liblcms2-2:amd64 (2.14-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libpixman-1-0:amd64 (0.42.2-1) ... Setting up libaom3:amd64 (3.6.0-1) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up mysql-common (5.8+1.1.0) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libabsl20220623:amd64 (20220623.1-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libapparmor1:amd64 (3.0.8-3) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-10+b1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up fonts-noto-mono (20201225-1) ... Setting up probcons (1.12-14) ... Setting up java-common (0.74) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libfcgi0ldbl:amd64 (2.4.2-2) ... Setting up poa (2.0+20060928-8) ... Setting up xdg-user-dirs (0.18-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up gawk (1:5.2.1-2) ... Setting up psmisc (23.6-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up bwa (0.7.17-7+b2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up unzip (6.0-28) ... Setting up libcbor0.8:amd64 (0.8.0-2+b1) ... Setting up libgs-common (10.0.0~dfsg-11+deb12u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Setting up liblab-gamut1:amd64 (2.42.2-7+b3) ... Setting up phylip (1:3.697+dfsg-2) ... Setting up libfcgi-bin (2.4.2-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... 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Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ... Setting up mariadb-common (1:10.11.6-0+deb12u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libasound2-data (1.2.8-1) ... Setting up infernal (1.1.4-1) ... Setting up primer3 (2.6.1-4) ... Setting up libpcre3:amd64 (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up kalign (1:3.3.5-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libglib2.0-data (2.74.6-2) ... Setting up dialign-tx-data (1.0.2-14) ... Setting up libmunge2 (0.5.15-2) ... Setting up lagan (2.0-9) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up mustang (3.2.4-1) ... Setting up libmbedcrypto7:amd64 (2.28.3-1) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libjbig2dec0:amd64 (0.19-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up gbrowse-data (2.56+dfsg-11) ... Setting up fonts-liberation2 (2.1.5-1) ... Setting up proda (1.0-13) ... Setting up sim4 (0.0.20121010-8) ... Setting up libpathplan4:amd64 (2.42.2-7+b3) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xz-utils (5.4.1-0.2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libhwloc15:amd64 (2.9.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libidn12:amd64 (1.41-1) ... Setting up libmariadb3:amd64 (1:10.11.6-0+deb12u1) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up wise-data (2.4.1-23) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-prototype (1.7.3-1) ... Setting up lynx-common (2.9.0dev.12-1) ... Setting up libdav1d6:amd64 (1.0.0-2) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libltdl7:amd64 (2.4.7-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up ruby-webrick (1.8.1-1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up alsa-topology-conf (1.2.5.1-2) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ... Setting up paml (4.9j+dfsg-4) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up dialign-tx (1.0.2-14+b1) ... Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... Setting up liblua5.3-0:amd64 (5.3.6-2) ... Setting up pal2nal (14.1-3) ... Setting up procps (2:4.0.2-3) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up netbase (6.4) ... Setting up libcdt5:amd64 (2.42.2-7+b3) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libcgraph6:amd64 (2.42.2-7+b3) ... Setting up apache2-data (2.4.57-2) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... Setting up menu (2.1.49) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up libde265-0:amd64 (1.0.11-1+deb12u2) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up tigr-glimmer (3.02b-6+b1) ... Setting up libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Setting up dialign (2.2.1-11) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up publicsuffix (20230209.2326-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up exonerate (2.4.0-5) ... Setting up bedtools (2.30.0+dfsg-3) ... Setting up dbus-bin (1.14.10-1~deb12u1) ... Setting up sqlite3 (3.40.1-2) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up maq (0.7.1-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up raxml (8.2.12+dfsg-8+b2) ... Setting up libaprutil1:amd64 (1.6.3-1) ... Setting up libgts-bin (0.7.6+darcs121130-5+b1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libavif15:amd64 (0.11.1-1) ... Setting up libmbedx509-1:amd64 (2.28.3-1) ... Setting up libmbedtls14:amd64 (2.28.3-1) ... Setting up alsa-ucm-conf (1.2.8-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libjs-scriptaculous (1.9.0-3) ... Setting up wise (2.4.1-23) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up dbus-daemon (1.14.10-1~deb12u1) ... Setting up clustalo (1.2.4-7) ... Setting up tm-align (20190822+dfsg-2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.3-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up ssl-cert (1.1.2) ... Setting up dbus (1.14.10-1~deb12u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up ucf (3.0043+nmu1) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libgvpr2:amd64 (2.42.2-7+b3) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u5) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up lynx (2.9.0dev.12-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up apache2-utils (2.4.57-2) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (44.0-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up openssh-client (1:9.2p1-2+deb12u2) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up libpq5:amd64 (15.5-0+deb12u1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u5) ... Setting up rubygems-integration (1.18) ... Setting up hyphy-pt (2.5.47+dfsg-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libaprutil1-ldap:amd64 (1.6.3-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libset-object-perl (1.42-1+b2) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libref-util-perl (0.204-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libencode-perl:amd64 (3.19-1+b1) ... Setting up libcrypt-rc4-perl (2.02-5) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up liblist-moreutils-xs-perl (0.430-3+b1) ... Setting up libmath-derivative-perl (1.01-3) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libset-scalar-perl (1.29-3) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libcups2:amd64 (2.4.2-3+deb12u5) ... Setting up libsub-name-perl:amd64 (0.26-2+b1) ... Setting up libtype-tiny-xs-perl:amd64 (0.025-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up xauth (1:1.1.2-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libfcgi-perl (0.82+ds-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libcarp-clan-perl (6.08-2) ... Setting up emboss-lib (6.6.0+dfsg-12) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libexporter-tiny-perl (1.006000-1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libstaden-read14:amd64 (1.14.15-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libguard-perl (1.023-2+b1) ... Setting up libpostscript-perl (0.06-3.1) ... Setting up libsort-naturally-perl (1.03-4) ... Setting up liburi-perl (5.17-1) ... Setting up libdbi-perl:amd64 (1.643-4) ... Setting up libdate-manip-perl (6.91-1) ... Setting up libfile-sort-perl (1.01-3) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libtext-csv-perl (2.02-2) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libmath-spline-perl (0.02-4) ... Setting up libanyevent-perl (7.170-2+b3) ... Setting up libjcode-pm-perl (2.06-1.1) ... Setting up libio-sessiondata-perl (1.03-3) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up libstring-approx-perl (3.28-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libfile-slurp-perl (9999.32-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up libtask-weaken-perl (1.06-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up emboss (6.6.0+dfsg-12) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libconvert-binary-c-perl (0.84-1+b2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libclass-method-modifiers-perl (2.14-1) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libref-util-xs-perl (0.117-2+b1) ... Setting up libalgorithm-munkres-perl (0.08-5) ... Setting up perl-tk (1:804.036-1+b2) ... Setting up libio-pty-perl (1:1.17-1) ... Setting up mafft (7.505-1) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libauthen-sasl-perl (2.1600-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libbio-scf-perl (1.03-6+b1) ... Setting up libfile-slurp-tiny-perl (0.004-2) ... Setting up libipc-sharelite-perl (0.17-5) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up libheap-perl (0.80-5) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libtype-tiny-perl (2.002001-1) ... Setting up perl-doc (5.36.0-7+deb12u1) ... Setting up libcommon-sense-perl:amd64 (3.75-3) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libsvg-perl (2.87-1) ... Setting up libnet-http-perl (6.22-1) ... Setting up libanyevent-http-perl (2.25-2) ... Setting up libbsd-resource-perl (1.2911-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libdbd-pg-perl (3.16.0-2) ... Setting up libtext-csv-xs-perl:amd64 (1.49-1) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up libexception-class-perl (1.45-1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libxstring-perl:amd64 (0.005-2+b1) ... Setting up libgraph-perl (1:0.9726-1) ... Setting up apache2-bin (2.4.57-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up libyaml-perl (1.30-2) ... Setting up libspreadsheet-writeexcel-perl (2.40-4) ... Setting up samtools (1.16.1-1) ... Setting up libbit-vector-perl:amd64 (7.4-2+b1) ... Setting up libfreezethaw-perl (0.5001-3) ... Setting up liberror-perl (0.17029-2) ... Setting up libdigest-perl-md5-perl (1.9-5) ... Setting up libgd-perl (2.76-4+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libreadonly-perl (2.050-3) ... Setting up libunicode-map-perl (0.112-13+b1) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libanyevent-cachedns-perl (0.08-3) ... Setting up libgvc6 (2.42.2-7+b3) ... Setting up libdbd-mysql-perl:amd64 (4.050-5+b1) ... Setting up libipc-run-perl (20220807.0-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.10+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libole-storage-lite-perl (0.20-2) ... Setting up libspreadsheet-parseexcel-perl (0.6500-4~deb12u1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtypes-serialiser-perl (1.01-1) ... Setting up libtree-dagnode-perl (1.32-1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up pftools (3.2.12-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libdbd-sqlite3-perl:amd64 (1.72-1) ... Setting up libgd-svg-perl (0.33-3) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libev-perl:amd64 (4.33-2) ... Setting up libalgorithm-diff-xs-perl:amd64 (0.04-8+b1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libasync-interrupt-perl (1.26-1+b3) ... Setting up libbio-perl-run-perl (1.7.3-9) ... Setting up libjson-xs-perl (4.030-2+b1) ... Setting up graphviz (2.42.2-7+b3) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libgs10-common (10.0.0~dfsg-11+deb12u3) ... Setting up python3.11 (3.11.2-6) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up libdate-calc-perl (6.4-2) ... Setting up libcache-cache-perl (1.08-3) ... Setting up libpmix2:amd64 (4.2.2-1+deb12u1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdate-calc-xs-perl:amd64 (6.4-2+b1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up apache2 (2.4.57-2) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. info: Executing deferred 'a2enconf javascript-common' for package javascript-common Enabling conf javascript-common. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libtest-differences-perl (0.69-1) ... Setting up python3 (3.11.2-1+b1) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up libbio-tools-run-alignment-clustalw-perl (1.7.4-3) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libmailtools-perl (2.21-2) ... Setting up libcgi-session-perl (4.48-4) ... Setting up libxml-filter-buffertext-perl (1.01-7) ... Setting up libace-perl (1.92-11+b2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-2) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20220408-3) ... Setting up libgs10:amd64 (10.0.0~dfsg-11+deb12u3) ... Setting up ncbi-blast+-legacy (2.12.0+ds-3) ... Setting up libxml-sax-writer-perl (0.57-2) ... Setting up libsvg-graph-perl (0.02-4) ... Setting up bowtie (1.3.1-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libtest-most-perl (0.38-1) ... Setting up libcgi-fast-perl (1:2.15-1) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up ghostscript (10.0.0~dfsg-11+deb12u3) ... Setting up libmime-tools-perl (5.510-1) ... Setting up libarray-compare-perl (3.0.8-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libxml-libxslt-perl:amd64 (2.002001-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up bioperl (1.7.8-1) ... Setting up libbio-coordinate-perl (1.7.1-4) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libruby3.1:amd64 (3.1.2-7) ... Setting up libruby:amd64 (1:3.1) ... Setting up libwww-perl (6.68-1) ... Setting up libapache2-mod-perl2 (2.0.12-1+b2) ... apache2_invoke: Enable module perl invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache2-reload-perl (0.13-4) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libbio-tools-run-remoteblast-perl (1.7.3-3) ... Setting up ruby3.1 (3.1.2-7) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b1) ... Setting up libxml-parser-perl (2.46-4) ... Setting up libvm-ec2-perl (1.28-4) ... Setting up libxml-twig-perl (1:3.52-2) ... Setting up libxml-xpath-perl (1.48-1) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libapache-dbi-perl (1.12-3) ... Setting up ruby (1:3.1) ... Setting up rake (13.0.6-3) ... Setting up libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-4) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Setting up libbio-db-seqfeature-perl (1.7.4-2) ... Setting up libbio-graphics-perl (2.40-6) ... Setting up libsoap-lite-perl (1.27-3) ... Setting up libgraphviz-perl (2.24-1) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libbio-asn1-entrezgene-perl (1.730-2) ... Setting up ruby-rubygems (3.3.15-2) ... Setting up gbrowse (2.56+dfsg-11) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Setting up libxml-dom-xpath-perl (0.14-4) ... Setting up libbio-eutilities-perl (1.77-2) ... Setting up libxmlrpc-lite-perl (0.717-5) ... Setting up libbio-featureio-perl (1.6.905-2) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:amd64 (17.0.10+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-74) ... Setting up default-jdk-headless (2:1.17-74) ... Setting up bioperl-run (1.7.3-9) ... Processing triggers for menu (2.1.49) ... Setting up blends-common (0.7.5) ... Setting up med-config (3.8.1) ... Adding group `med' (GID 154) ... Done. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. 1m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', '-y', 'install', 'gbrowse-data=2.56+dfsg-11'] 1m36.6s INFO: Running scripts post_install 1m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_install_exceptions'] 1m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_install_exceptions'] 1m36.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 1m37.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 1m40.3s ERROR: WARN: Broken symlinks: /usr/share/gbrowse/htdocs/i -> /var/cache/gbrowse/images (gbrowse) /usr/share/doc/libucx0/README -> README.md (libucx0:amd64) /usr/lib/jvm/java-17-openjdk-amd64/lib/src.zip -> ../../openjdk-17/src.zip (openjdk-17-jdk-headless:amd64) 1m40.3s INFO: /bin converted to /usr/bin by /usr merge 1m40.3s INFO: /lib converted to /usr/lib by /usr merge 1m40.3s INFO: /lib/firmware converted to /usr/lib/firmware by /usr merge 1m40.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m40.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m40.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m40.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m40.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m40.3s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 1m40.4s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 1m40.4s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m40.4s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m40.4s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m40.4s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m40.4s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m40.4s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m40.4s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m40.4s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m40.4s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m40.4s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m40.4s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m40.4s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m40.4s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m40.4s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m40.4s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m40.4s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m40.4s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m40.4s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m40.4s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m40.4s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m40.4s INFO: /sbin converted to /usr/sbin by /usr merge 1m41.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', '-ac', '--ignore-obsolete'] 1m47.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', '-ac', '--ignore-obsolete'] 1m47.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m47.7s DUMP: 0.15.6 1m47.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m47.7s INFO: Running adequate version 0.15.6 now. 1m47.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'gbrowse-data'] 1m47.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'gbrowse-data'] 1m47.8s INFO: Running scripts pre_remove 1m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m47.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m47.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_exceptions'] 2m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/pre_remove_exceptions'] 2m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m3.5s DUMP: install ok installed adduser adduser 3.134 install ok installed alsa-topology-conf alsa-topology-conf 1.2.5.1-2 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.8-1 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-2 install ok installed apache2 apache2 2.4.57-2 install ok installed apache2-bin apache2-bin 2.4.57-2 install ok installed apache2-data apache2-data 2.4.57-2 install ok installed apache2-utils apache2-utils 2.4.57-2 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bedtools bedtools 2.30.0+dfsg-3 install ok installed bioperl bioperl 1.7.8-1 install ok installed bioperl-run bioperl-run 1.7.3-9 install ok installed blends-common blends-common 0.7.5 install ok installed bowtie bowtie 1.3.1-1+b1 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed bwa bwa 0.7.17-7+b2 install ok installed bzip2 bzip2 1.0.8-5+b1 install ok installed ca-certificates ca-certificates 20230311 install ok installed ca-certificates-java ca-certificates-java 20230710~deb12u1 install ok installed clustalo clustalo 1.2.4-7 install ok installed clustalw clustalw 2.1+lgpl-7 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed dbus dbus 1.14.10-1~deb12u1 install ok installed dbus-bin dbus-bin 1.14.10-1~deb12u1 install ok installed dbus-daemon dbus-daemon 1.14.10-1~deb12u1 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-1~deb12u1 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-1~deb12u1 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed default-jdk-headless default-jdk-headless 2:1.17-74 install ok installed default-jre-headless default-jre-headless 2:1.17-74 install ok installed dialign dialign 2.2.1-11 install ok installed dialign-tx dialign-tx 1.0.2-14+b1 install ok installed dialign-tx-data dialign-tx-data 1.0.2-14 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed emboss emboss 6.6.0+dfsg-12 install ok installed emboss-data emboss-data 6.6.0+dfsg-12 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-12 install ok installed exonerate exonerate 2.4.0-5 install ok installed file file 1:5.44-3 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig fontconfig 2.14.1-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-6 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-liberation2 fonts-liberation2 2.1.5-1 install ok installed fonts-noto-mono fonts-noto-mono 20201225-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed fsa fsa 1.15.9+dfsg-6 install ok installed gawk gawk 1:5.2.1-2 install ok installed gbrowse gbrowse 2.56+dfsg-11 install ok installed gbrowse-data gbrowse-data 2.56+dfsg-11 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed ghostscript ghostscript 10.0.0~dfsg-11+deb12u3 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed graphviz graphviz 2.42.2-7+b3 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hmmer hmmer 3.3.2+dfsg-1 install ok installed hostname hostname 3.23+nmu1 install ok installed hyphy-common hyphy-common 2.5.47+dfsg-1 install ok installed hyphy-pt hyphy-pt 2.5.47+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 44.0-2 install ok installed infernal infernal 1.1.4-1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed java-common java-common 0.74 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kalign kalign 1:3.3.5-1 install ok installed krb5-locales krb5-locales 1.20.1-2+deb12u1 install ok installed lagan lagan 2.0-9 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-1 install ok installed libace-perl libace-perl 1.92-11+b2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl:amd64 libalgorithm-diff-xs-perl 0.04-8+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-5 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-3 install ok installed libanyevent-http-perl libanyevent-http-perl 2.25-2 install ok installed libanyevent-perl libanyevent-perl 7.170-2+b3 install ok installed libaom3:amd64 libaom3 3.6.0-1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-3 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.12-1+b2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-4 install ok installed libapparmor1:amd64 libapparmor1 3.0.8-3 install ok installed libapr1:amd64 libapr1 1.7.2-3 install ok installed libaprutil1:amd64 libaprutil1 1.6.3-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.3-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.3-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libargtable2-0 libargtable2-0 13-1.1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.8-1 install ok installed libasound2:amd64 libasound2 1.2.8-1+b1 install ok installed libasound2-data libasound2-data 1.2.8-1 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.26-1+b3 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-3 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-10 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-10 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-10 install ok installed libavif15:amd64 libavif15 0.11.1-1 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.26-1 install ok installed libb-hooks-op-check-perl:amd64 libb-hooks-op-check-perl 0.22-2+b1 install ok installed libberkeleydb-perl:amd64 libberkeleydb-perl 0.64-2+b1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.730-2 install ok installed libbio-cluster-perl libbio-cluster-perl 1.7.3-6 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-4 install ok installed libbio-db-biofetch-perl libbio-db-biofetch-perl 1.7.3-4 install ok installed libbio-db-gff-perl libbio-db-gff-perl 1.7.4-1 install ok installed libbio-db-seqfeature-perl libbio-db-seqfeature-perl 1.7.4-2 install ok installed libbio-eutilities-perl libbio-eutilities-perl 1.77-2 install ok installed libbio-featureio-perl libbio-featureio-perl 1.6.905-2 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-6 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.3-9 install ok installed libbio-scf-perl libbio-scf-perl 1.03-6+b1 install ok installed libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-clustalw-perl 1.7.4-3 install ok installed libbio-tools-run-remoteblast-perl libbio-tools-run-remoteblast-perl 1.7.3-3 install ok installed libbio-variation-perl libbio-variation-perl 1.7.5-3 install ok installed libbit-vector-perl:amd64 libbit-vector-perl 7.4-2+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-2+b1 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libcache-cache-perl libcache-cache-perl 1.08-3 install ok installed libcairo2:amd64 libcairo2 1.16.0-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-2 install ok installed libcarp-clan-perl libcarp-clan-perl 6.08-2 install ok installed libcbor0.8:amd64 libcbor0.8 0.8.0-2+b1 install ok installed libcdt5:amd64 libcdt5 2.42.2-7+b3 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.15-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.55-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-4 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-7+b3 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.36-3 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.14-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-4+b1 install ok installed libclone-perl:amd64 libclone-perl 0.46-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcommon-sense-perl:amd64 libcommon-sense-perl 3.75-3 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.84-1+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-3 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libcups2:amd64 libcups2 2.4.2-3+deb12u5 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u5 install ok installed libcurl4:amd64 libcurl4 7.88.1-10+deb12u5 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-3 install ok installed libdate-calc-perl libdate-calc-perl 6.4-2 install ok installed libdate-calc-xs-perl:amd64 libdate-calc-xs-perl 6.4-2+b1 install ok installed libdate-manip-perl libdate-manip-perl 6.91-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdav1d6:amd64 libdav1d6 1.0.0-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-5+b1 install ok installed libdbd-pg-perl libdbd-pg-perl 3.16.0-2 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.72-1 install ok installed libdbi-perl:amd64 libdbi-perl 1.643-4 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-1~deb12u1 install ok installed libde265-0:amd64 libde265-0 1.0.11-1+deb12u2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libdevel-callchecker-perl:amd64 libdevel-callchecker-perl 0.008-2 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0400-2 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-5 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-5 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-3 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libencode-perl:amd64 libencode-perl 3.19-1+b1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libev-perl:amd64 libev-perl 4.33-2 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-8 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-8 install ok installed libexception-class-perl libexception-class-perl 1.45-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.006000-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libfabric1:amd64 libfabric1 1.17.0-3 install ok installed libfcgi-bin libfcgi-bin 2.4.2-2 install ok installed libfcgi-perl libfcgi-perl 0.82+ds-2 install ok installed libfcgi0ldbl:amd64 libfcgi0ldbl 2.4.2-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfido2-1:amd64 libfido2-1 1.12.0-2+b1 install ok installed libfile-listing-perl libfile-listing-perl 6.15-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.32-2 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-2 install ok installed libfile-sort-perl libfile-sort-perl 1.01-3 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgd-perl libgd-perl 2.76-4+b1 install ok installed libgd-svg-perl libgd-svg-perl 0.33-3 install ok installed libgd3:amd64 libgd3 2.3.3-9 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2 install ok installed libglib2.0-data libglib2.0-data 2.74.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-10+b1 install ok installed libgraph-perl libgraph-perl 1:0.9726-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgraphviz-perl libgraphviz-perl 2.24-1 install ok installed libgs-common libgs-common 10.0.0~dfsg-11+deb12u3 install ok installed libgs10:amd64 libgs10 10.0.0~dfsg-11+deb12u3 install ok installed libgs10-common libgs10-common 10.0.0~dfsg-11+deb12u3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u1 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-5+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-5+b1 install ok installed libguard-perl libguard-perl 1.023-2+b1 install ok installed libgvc6 libgvc6 2.42.2-7+b3 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-7+b3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libheap-perl libheap-perl 0.80-5 install ok installed libheif1:amd64 libheif1 1.15.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.11-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.81-1 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-6 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-2 install ok installed libhttp-message-perl libhttp-message-perl 6.44-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.9.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.9.0-1 install ok installed libibverbs1:amd64 libibverbs1 44.0-2 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn12:amd64 libidn12 1.41-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-15 install ok installed libimport-into-perl libimport-into-perl 1.002005-2 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-pty-perl libio-pty-perl 1:1.17-1 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.081-2 install ok installed libio-string-perl libio-string-perl 1.08-4 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20220807.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-5 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.19-3 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-prototype libjs-prototype 1.7.3-1 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-3 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed libjson-xs-perl libjson-xs-perl 4.030-2+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u1 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.2-7+b3 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed libldap-common libldap-common 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.430-2 install ok installed liblist-moreutils-xs-perl liblist-moreutils-xs-perl 0.430-3+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed libltdl7:amd64 libltdl7 2.4.7-5 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.6-2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmagic-mgc libmagic-mgc 1:5.44-3 install ok installed libmagic1:amd64 libmagic1 1:5.44-3 install ok installed libmailtools-perl libmailtools-perl 2.21-2 install ok installed libmariadb3:amd64 libmariadb3 1:10.11.6-0+deb12u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-3 install ok installed libmath-spline-perl libmath-spline-perl 0.02-4 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.3-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.3-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.3-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmime-tools-perl libmime-tools-perl 5.510-1 install ok installed libmldbm-perl libmldbm-perl 2.05-4 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-2 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-2 install ok installed libmoo-perl libmoo-perl 2.005005-1 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libmunge2 libmunge2 0.5.15-2 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-2 install ok installed libncurses6:amd64 libncurses6 6.4-4 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnet-http-perl libnet-http-perl 6.22-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.92-2+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.2+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1 install ok installed libnss3:amd64 libnss3 2:3.87.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.20-2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.4-3+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpackage-stash-perl libpackage-stash-perl 0.40-1 install ok installed libpackage-stash-xs-perl:amd64 libpackage-stash-xs-perl 0.30-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.12+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.12+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.12+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libparams-classify-perl:amd64 libparams-classify-perl 0.015-2+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-4 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-7+b3 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.9-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpmix2:amd64 libpmix2 4.2.2-1+deb12u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpostscript-perl libpostscript-perl 0.06-3.1 install ok installed libpq5:amd64 libpq5 15.5-0+deb12u1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.2-3 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.2 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed librav1e0:amd64 librav1e0 0.5.1-6 install ok installed librdmacm1:amd64 librdmacm1 44.0-2 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed libreadonly-perl libreadonly-perl 2.050-3 install ok installed libref-util-perl libref-util-perl 0.204-2 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-2+b1 install ok installed libregexp-ipv6-perl libregexp-ipv6-perl 0.03-3 install ok installed librole-tiny-perl librole-tiny-perl 2.002004-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libruby:amd64 libruby 1:3.1 install ok installed libruby3.1:amd64 libruby3.1 3.1.2-7 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libset-object-perl libset-object-perl 1.42-1+b2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-3 install ok installed libsigsegv2:amd64 libsigsegv2 2.14-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-4 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-4~deb12u1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.11-1~deb12u2 install ok installed libstaden-read14:amd64 libstaden-read14 1.14.15-1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0800-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libstring-approx-perl libstring-approx-perl 3.28-2+b1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-3 install ok installed libsub-identify-perl libsub-identify-perl 0.14-3 install ok installed libsub-name-perl:amd64 libsub-name-perl 0.26-2+b1 install ok installed libsub-quote-perl libsub-quote-perl 2.006008-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-3 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-4 install ok installed libsvg-perl libsvg-perl 2.87-1 install ok installed libsvtav1enc1:amd64 libsvtav1enc1 1.4.1+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libterm-readkey-perl libterm-readkey-perl 2.38-2+b1 install ok installed libtest-deep-perl libtest-deep-perl 1.204-1 install ok installed libtest-differences-perl libtest-differences-perl 0.69-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-3 install ok installed libtest-most-perl libtest-most-perl 0.38-1 install ok installed libtest-requiresinternet-perl libtest-requiresinternet-perl 0.05-4 install ok installed libtest-warn-perl libtest-warn-perl 0.37-2 install ok installed libtext-csv-perl libtext-csv-perl 2.02-2 install ok installed libtext-csv-xs-perl:amd64 libtext-csv-xs-perl 1.49-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-2 install ok installed libtext-iconv-perl:amd64 libtext-iconv-perl 1.7-8 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-4 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.32-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-2 install ok installed libtype-tiny-perl libtype-tiny-perl 2.002001-1 install ok installed libtype-tiny-xs-perl:amd64 libtype-tiny-xs-perl 0.025-1 install ok installed libtypes-serialiser-perl libtypes-serialiser-perl 1.01-1 install ok installed libucx0:amd64 libucx0 1.13.1-1 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunicode-map-perl libunicode-map-perl 0.112-13+b1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed liburi-perl liburi-perl 5.17-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.63-1+b1 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-4 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwww-perl libwww-perl 6.68-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libx265-199:amd64 libx265-199 3.5-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.14-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml-dom-perl libxml-dom-perl 1.46-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-4 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-7 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0207+dfsg+really+2.0134-1+b1 install ok installed libxml-libxslt-perl:amd64 libxml-libxslt-perl 2.002001-1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-2 install ok installed libxml-parser-perl libxml-parser-perl 2.46-4 install ok installed libxml-perl libxml-perl 0.08-4 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1.1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-3 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-2 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-3 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-2 install ok installed libxml-simple-perl libxml-simple-perl 2.25-2 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-2 install ok installed libxml-writer-perl libxml-writer-perl 0.900-2 install ok installed libxml-xpath-perl libxml-xpath-perl 1.48-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-2 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-5 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3 install ok installed libxnvctrl0:amd64 libxnvctrl0 525.85.05-3~deb12u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb12u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxstring-perl:amd64 libxstring-perl 0.005-2+b1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.86+ds-1 install ok installed libyaml-perl libyaml-perl 1.30-2 install ok installed libyuv0:amd64 libyuv0 0.0~git20230123.b2528b0-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed lynx lynx 2.9.0dev.12-1 install ok installed lynx-common lynx-common 2.9.0dev.12-1 install ok installed mafft mafft 7.505-1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed maq maq 0.7.1-9 install ok installed mariadb-common mariadb-common 1:10.11.6-0+deb12u1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed med-config med-config 3.8.1 install ok installed media-types media-types 10.0.0 install ok installed menu menu 2.1.49 install ok installed mount mount 2.38.1-5+b1 install ok installed mummer mummer 3.23+dfsg-8 install ok installed muscle muscle 1:5.1.0-1 install ok installed mustang mustang 3.2.4-1 install ok installed mysql-common mysql-common 5.8+1.1.0 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-3+b1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.12.0+ds-3 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncoils ncoils 2002-9 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed netbase netbase 6.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.1-1 install ok installed openjdk-17-jdk-headless:amd64 openjdk-17-jdk-headless 17.0.10+7-1~deb12u1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.10+7-1~deb12u1 install ok installed openmpi-bin openmpi-bin 4.1.4-3+b1 install ok installed openmpi-common openmpi-common 4.1.4-3 install ok installed openssh-client openssh-client 1:9.2p1-2+deb12u2 install ok installed openssl openssl 3.0.11-1~deb12u2 install ok installed pal2nal pal2nal 14.1-3 install ok installed paml paml 4.9j+dfsg-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-doc perl-doc 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b1 install ok installed perl-tk perl-tk 1:804.036-1+b2 install ok installed pftools pftools 3.2.12-1 install ok installed phylip phylip 1:3.697+dfsg-2 install ok installed phyml phyml 3:3.3.20220408-3 install ok installed poa poa 2.0+20060928-8 install ok installed poppler-data poppler-data 0.4.12-1 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed primer3 primer3 2.6.1-4 install ok installed probalign probalign 1.4-10 install ok installed probcons probcons 1.12-14 install ok installed procps procps 2:4.0.2-3 install ok installed proda proda 1.0-13 install ok installed psmisc psmisc 23.6-1 install ok installed publicsuffix publicsuffix 20230209.2326-1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3.11 python3.11 3.11.2-6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6 install ok installed rake rake 13.0.6-3 install ok installed raxml raxml 8.2.12+dfsg-8+b2 install ok installed readline-common readline-common 8.2-1.3 install ok installed ruby ruby 1:3.1 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-rubygems ruby-rubygems 3.3.15-2 install ok installed ruby-sdbm:amd64 ruby-sdbm 1.0.0-5+b1 install ok installed ruby-webrick ruby-webrick 1.8.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.2-2 install ok installed ruby3.1 ruby3.1 3.1.2-7 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed samtools samtools 1.16.1-1 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed sim4 sim4 0.0.20121010-8 install ok installed sqlite3 sqlite3 3.40.1-2 install ok installed ssl-cert ssl-cert 1.1.2 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed t-coffee t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tigr-glimmer tigr-glimmer 3.02b-6+b1 install ok installed tm-align tm-align 20190822+dfsg-2 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed wise wise 2.4.1-23 install ok installed wise-data wise-data 2.4.1-23 install ok installed x11-common x11-common 1:7.7+23 install ok installed xauth xauth 1:1.1.2-1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xz-utils xz-utils 5.4.1-0.2 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 2m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libcommon-sense-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libev-perl:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip', 'gbrowse-data'] 2m11.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: alsa-topology-conf alsa-ucm-conf amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation2 fonts-noto-mono fonts-urw-base35 fsa gawk gbrowse gbrowse-data ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign krb5-locales lagan libabsl20220623 libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasync-interrupt-perl libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-eutilities-perl libbio-featureio-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0.8 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d6 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libencode-perl liberror-perl libev-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd-svg-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpfr6 libmunge2 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl2 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcsclite1 libperl5.36 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libproc2-0 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-ipv6-perl librole-tiny-perl librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl3 libstaden-read14 libstatistics-descriptive-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1 libtask-weaken-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc3 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvm-ec2-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxstring-perl libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.36 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python3 python3-minimal python3.11 python3.11-minimal rake raxml readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xz-utils zip 0 upgraded, 0 newly installed, 507 to remove and 0 not upgraded. After this operation, 1589 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34767 files and directories currently installed.) Removing alsa-topology-conf (1.2.5.1-2) ... Removing alsa-ucm-conf (1.2.8-1) ... Removing amap-align (2.2+git20080214.600fc29+dfsg-2) ... Removing gbrowse (2.56+dfsg-11) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.57-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libapache2-reload-perl (0.13-4) ... Removing libbio-graphics-perl (2.40-6) ... Removing libbio-db-seqfeature-perl (1.7.4-2) ... Removing libbio-db-gff-perl (1.7.4-1) ... Removing libapache-dbi-perl (1.12-3) ... Removing libapache2-mod-perl2 (2.0.12-1+b2) ... Removing apache2-bin (2.4.57-2) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.57-2) ... Removing apache2-utils (2.4.57-2) ... Removing bedtools (2.30.0+dfsg-3) ... Removing bioperl-run (1.7.3-9) ... Removing libbio-coordinate-perl (1.7.1-4) ... Removing bioperl (1.7.8-1) ... Removing med-config (3.8.1) ... Removing blends-common (0.7.5) ... Removing bowtie (1.3.1-1+b1) ... Removing bwa (0.7.17-7+b2) ... Removing bzip2 (1.0.8-5+b1) ... Removing default-jdk-headless (2:1.17-74) ... Removing openjdk-17-jdk-headless:amd64 (17.0.10+7-1~deb12u1) ... Removing clustalo (1.2.4-7) ... Removing libbio-tools-run-alignment-clustalw-perl (1.7.4-3) ... Removing clustalw (2.1+lgpl-7) ... Removing dbus (1.14.10-1~deb12u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-daemon (1.14.10-1~deb12u1) ... Removing dbus-bin (1.14.10-1~deb12u1) ... Removing dbus-session-bus-common (1.14.10-1~deb12u1) ... Removing dbus-system-bus-common (1.14.10-1~deb12u1) ... Removing default-jre-headless (2:1.17-74) ... Removing dialign (2.2.1-11) ... Removing dialign-tx (1.0.2-14+b1) ... Removing dialign-tx-data (1.0.2-14) ... Removing emboss (6.6.0+dfsg-12) ... Removing emboss-data (6.6.0+dfsg-12) ... Removing emboss-lib (6.6.0+dfsg-12) ... Removing fsa (1.15.9+dfsg-6) ... Removing exonerate (2.4.0-5) ... Removing file (1:5.44-3) ... Removing libgraphviz-perl (2.24-1) ... Removing graphviz (2.42.2-7+b3) ... Removing libgvc6 (2.42.2-7+b3) ... Removing libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.12+ds-1) ... Removing fontconfig (2.14.1-4) ... Removing perl-tk (1:804.036-1+b2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libgd-svg-perl (0.33-3) ... Removing libgd-perl (2.76-4+b1) ... Removing libgd3:amd64 (2.3.3-9) ... Removing fonts-dejavu-core (2.37-6) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.0-2.1) ... Removing fonts-liberation2 (2.1.5-1) ... Removing fonts-noto-mono (20201225-1) ... Removing ghostscript (10.0.0~dfsg-11+deb12u3) ... Removing libgs10:amd64 (10.0.0~dfsg-11+deb12u3) ... Removing libgs10-common (10.0.0~dfsg-11+deb12u3) ... Removing mummer (3.23+dfsg-8) ... Removing gawk (1:5.2.1-2) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing gbrowse-data (2.56+dfsg-11) ... Removing hmmer (3.3.2+dfsg-1) ... Removing hyphy-pt (2.5.47+dfsg-1) ... Removing hyphy-common (2.5.47+dfsg-1) ... Removing phyml (3:3.3.20220408-3) ... Removing openmpi-bin (4.1.4-3+b1) ... Removing libopenmpi3:amd64 (4.1.4-3+b1) ... Removing libucx0:amd64 (1.13.1-1) ... Removing libfabric1:amd64 (1.17.0-3) ... Removing ibverbs-providers:amd64 (44.0-2) ... Removing infernal (1.1.4-1) ... Removing javascript-common (11+nmu1) ... Removing kalign (1:3.3.5-1) ... Removing krb5-locales (1.20.1-2+deb12u1) ... Removing lagan (2.0-9) ... Removing libavif15:amd64 (0.11.1-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-1) ... Removing libace-perl (1.92-11+b2) ... Removing libtest-most-perl (0.38-1) ... Removing libtest-differences-perl (0.69-1) ... Removing libtext-diff-perl (1.45-2) ... Removing libalgorithm-diff-xs-perl:amd64 (0.04-8+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libalgorithm-munkres-perl (0.08-5) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libvm-ec2-perl (1.28-4) ... Removing libanyevent-cachedns-perl (0.08-3) ... Removing libanyevent-http-perl (2.25-2) ... Removing libanyevent-perl (7.170-2+b3) ... Removing libheif1:amd64 (1.15.1-1) ... Removing libaom3:amd64 (3.6.0-1) ... Removing libapparmor1:amd64 (3.0.8-3) ... Removing libaprutil1-ldap:amd64 (1.6.3-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.3-1) ... Removing libaprutil1:amd64 (1.6.3-1) ... Removing libapr1:amd64 (1.7.2-3) ... Removing libargtable2-0 (13-1.1) ... Removing libarray-compare-perl (3.0.8-1) ... Removing libasync-interrupt-perl (1.26-1+b3) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libauthen-sasl-perl (2.1600-3) ... Removing libnamespace-clean-perl (0.27-2) ... Removing libb-hooks-endofscope-perl (0.26-1) ... Removing libpackage-stash-perl (0.40-1) ... Removing libmodule-implementation-perl (0.09-2) ... Removing libmoo-perl (2.005005-1) ... Removing libimport-into-perl (1.002005-2) ... Removing libmodule-runtime-perl (0.016-2) ... Removing libparams-classify-perl:amd64 (0.015-2+b1) ... Removing libdevel-callchecker-perl:amd64 (0.008-2) ... Removing libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Removing libberkeleydb-perl:amd64 (0.64-2+b1) ... Removing libbio-eutilities-perl (1.77-2) ... Removing libbio-asn1-entrezgene-perl (1.730-2) ... Removing libbio-cluster-perl (1.7.3-6) ... Removing libbio-db-biofetch-perl (1.7.3-4) ... Removing libbio-featureio-perl (1.6.905-2) ... Removing libbio-variation-perl (1.7.5-3) ... Removing libbio-tools-run-remoteblast-perl (1.7.3-3) ... Removing libbio-perl-run-perl (1.7.3-9) ... Removing libbio-scf-perl (1.03-6+b1) ... Removing libdate-calc-xs-perl:amd64 (6.4-2+b1) ... Removing libdate-calc-perl (6.4-2) ... Removing libbit-vector-perl:amd64 (7.4-2+b1) ... Removing libcurl4:amd64 (7.88.1-10+deb12u5) ... Removing libbsd-resource-perl (1.2911-2+b1) ... Removing lynx (2.9.0dev.12-1) ... Removing xauth (1:1.1.2-1) ... Removing libcache-cache-perl (1.08-3) ... Removing libcairo2:amd64 (1.16.0-7) ... Removing libcapture-tiny-perl (0.48-2) ... Removing libcarp-clan-perl (6.08-2) ... Removing openssh-client (1:9.2p1-2+deb12u2) ... Removing libfido2-1:amd64 (1.12.0-2+b1) ... Removing libcbor0.8:amd64 (0.8.0-2+b1) ... Removing libgvpr2:amd64 (2.42.2-7+b3) ... Removing libcgraph6:amd64 (2.42.2-7+b3) ... Removing libcdt5:amd64 (2.42.2-7+b3) ... Removing libcgi-fast-perl (1:2.15-1) ... Removing libcgi-session-perl (4.48-4) ... Removing libcgi-pm-perl (4.55-1) ... Removing libexception-class-perl (1.45-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-5) ... Removing libsoap-lite-perl (1.27-3) ... Removing libclass-inspector-perl (1.36-3) ... Removing librole-tiny-perl (2.002004-1) ... Removing libclass-method-modifiers-perl (2.14-1) ... Removing libclass-xsaccessor-perl (1.19-4+b1) ... Removing libxml-xpath-perl (1.48-1) ... Removing libxml-twig-perl (1:3.52-2) ... Removing libxml-dom-xpath-perl (0.14-4) ... Removing libxml-dom-perl (1.46-2) ... Removing libjson-xs-perl (4.030-2+b1) ... Removing libtypes-serialiser-perl (1.01-1) ... Removing libev-perl:amd64 (4.33-2) ... Removing libcommon-sense-perl:amd64 (3.75-3) ... Removing libconvert-binary-c-perl (0.84-1+b2) ... Removing libmime-tools-perl (5.510-1) ... Removing libconvert-binhex-perl (1.125-3) ... Removing libspreadsheet-parseexcel-perl (0.6500-4~deb12u1) ... Removing libcrypt-rc4-perl (2.02-5) ... Removing libstaden-read14:amd64 (1.14.15-1) ... Removing samtools (1.16.1-1) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u5) ... Removing libdata-dump-perl (1.25-1) ... Removing libdate-manip-perl (6.91-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libdav1d6:amd64 (1.0.0-2) ... Removing libdbd-mysql-perl:amd64 (4.050-5+b1) ... Removing libdbd-pg-perl (3.16.0-2) ... Removing libdbd-sqlite3-perl:amd64 (1.72-1) ... Removing libdbi-perl:amd64 (1.643-4) ... Removing libde265-0:amd64 (1.0.11-1+deb12u2) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libdevel-stacktrace-perl (2.0400-2) ... Removing libdevel-symdump-perl (2.18-5) ... Removing libdigest-perl-md5-perl (1.9-5) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing libdynaloader-functions-perl (0.003-3) ... Removing libtext-csv-xs-perl:amd64 (1.49-1) ... Removing libencode-perl:amd64 (3.19-1+b1) ... Removing liberror-perl (0.17029-2) ... Removing libpmix2:amd64 (4.2.2-1+deb12u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Removing ncbi-blast+-legacy (2.12.0+ds-3) ... Removing ncbi-blast+ (2.12.0+ds-3+b1) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6) ... Removing libtype-tiny-perl (2.002001-1) ... Removing libsvg-graph-perl (0.02-4) ... Removing libstatistics-descriptive-perl (3.0800-1) ... Removing liblist-moreutils-perl (0.430-2) ... Removing libexporter-tiny-perl (1.006000-1) ... Removing libfcgi-bin (2.4.2-2) ... Removing libfcgi-perl (0.82+ds-2) ... Removing libfcgi0ldbl:amd64 (2.4.2-2) ... Removing pftools (3.2.12-1) ... Removing libfile-slurp-perl (9999.32-2) ... Removing libtree-dagnode-perl (1.32-1) ... Removing libfile-slurp-tiny-perl (0.004-2) ... Removing libfile-sort-perl (1.01-3) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing libfreezethaw-perl (0.5001-3) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing perl-doc (5.36.0-7+deb12u1) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing mafft (7.505-1) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libtest-deep-perl (1.204-1) ... Removing libmailtools-perl (2.21-2) ... Removing mailcap (3.70+nmu1) ... Removing libyaml-perl (1.30-2) ... Removing tm-align (20190822+dfsg-2) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing wise (2.4.1-23) ... Removing shared-mime-info (2.2-1) ... Removing libglib2.0-data (2.74.6-2) ... Removing muscle (1:5.1.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libgpm2:amd64 (1.20.7-10+b1) ... Removing libgraph-perl (1:0.9726-1) ... Removing libgs-common (10.0.0~dfsg-11+deb12u3) ... Removing libpq5:amd64 (15.5-0+deb12u1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libgts-bin (0.7.6+darcs121130-5+b1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ... Removing libguard-perl (1.023-2+b1) ... Removing libheap-perl (0.80-5) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Removing libhtml-form-perl (6.11-1) ... Removing libhtml-tableextract-perl (2.15-2) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing libhwloc-plugins:amd64 (2.9.0-1) ... Removing libhwloc15:amd64 (2.9.0-1) ... Removing librdmacm1:amd64 (44.0-2) ... Removing libibverbs1:amd64 (44.0-2) ... Removing libxaw7:amd64 (2:1.0.14-1) ... Removing libxmu6:amd64 (2:1.1.3-3) ... Removing libxt6:amd64 (1:1.2.1-1.1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libxml-libxslt-perl:amd64 (2.002001-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libidn12:amd64 (1.41-1) ... Removing libijs-0.35:amd64 (0.35-15) ... Removing libipc-run-perl (20220807.0-1) ... Removing libio-pty-perl (1:1.17-1) ... Removing libio-sessiondata-perl (1.03-3) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libole-storage-lite-perl (0.20-2) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-sharelite-perl (0.17-5) ... Removing libjansson4:amd64 (2.14-2) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjbig2dec0:amd64 (0.19-3) ... Removing libjcode-pm-perl (2.06-1.1) ... Removing libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-scriptaculous (1.9.0-3) ... Removing libjs-prototype (1.7.3-1) ... Removing libjson-perl (4.10000-1) ... Removing liblab-gamut1:amd64 (2.42.2-7+b3) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libldap-common (2.5.13+dfsg-5) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing liblist-moreutils-xs-perl (0.430-3+b1) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libltdl7:amd64 (2.4.7-5) ... Removing liblua5.3-0:amd64 (5.3.6-2) ... Removing libmagic1:amd64 (1:5.44-3) ... Removing libmagic-mgc (1:5.44-3) ... Removing libmariadb3:amd64 (1:10.11.6-0+deb12u1) ... Removing libmath-spline-perl (0.02-4) ... Removing libmath-derivative-perl (1.01-3) ... Removing libmbedtls14:amd64 (2.28.3-1) ... Removing libmbedx509-1:amd64 (2.28.3-1) ... Removing libmbedcrypto7:amd64 (2.28.3-1) ... Removing libmldbm-perl (2.05-4) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libmunge2 (0.5.15-2) ... Removing procps (2:4.0.2-3) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libx265-199:amd64 (3.5-2+b1) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libpackage-stash-xs-perl:amd64 (0.30-1+b1) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libspreadsheet-writeexcel-perl (2.40-4) ... Removing libparse-recdescent-perl (1.967015+dfsg-4) ... Removing libpathplan4:amd64 (2.42.2-7+b3) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libpcre3:amd64 (2:8.39-15) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpostscript-perl (0.06-3.1) ... Removing libproc2-0:amd64 (2:4.0.2-3) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython3.11-minimal:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing librav1e0:amd64 (0.5.1-6) ... Removing sqlite3 (3.40.1-2) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libreadonly-perl (2.050-3) ... Removing libref-util-perl (0.204-2) ... Removing libref-util-xs-perl (0.117-2+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libset-object-perl (1.42-1+b2) ... Removing libset-scalar-perl (1.29-3) ... Removing libsigsegv2:amd64 (2.14-1) ... Removing libsort-naturally-perl (1.03-4) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing ssl-cert (1.1.2) ... Removing libstring-approx-perl (3.28-2+b1) ... Removing libsub-exporter-progressive-perl (0.001013-3) ... Removing libsub-identify-perl (0.14-3) ... Removing libsub-name-perl:amd64 (0.26-2+b1) ... Removing libsub-quote-perl (2.006008-1) ... Removing libtest-warn-perl (0.37-2) ... Removing libtest-exception-perl (0.43-3) ... Removing libsub-uplevel-perl (0.2800-3) ... Removing libsvg-perl (2.87-1) ... Removing libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Removing libtask-weaken-perl (1.06-2) ... Removing libterm-readkey-perl (2.38-2+b1) ... Removing libtest-requiresinternet-perl (0.05-4) ... Removing libtext-csv-perl (2.02-2) ... Removing libtext-iconv-perl:amd64 (1.7-8) ... Removing libthai-data (0.1.29-1) ... Removing libtie-ixhash-perl (1.23-4) ... Removing libtype-tiny-xs-perl:amd64 (0.025-1) ... Removing libunicode-map-perl (0.112-13+b1) ... Removing libvariable-magic-perl (0.63-1+b1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxml-sax-writer-perl (0.57-2) ... Removing libxml-filter-buffertext-perl (1.01-7) ... Removing libxml-simple-perl (2.25-2) ... Removing libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-2) ... Removing libxml-perl (0.08-4) ... Removing libxml-regexp-perl (0.04-1.1) ... Removing libxml-sax-base-perl (1.09-3) ... Removing libxml-writer-perl (0.900-2) ... Removing libxml-xpathengine-perl (0.14-2) ... Removing libxmuu1:amd64 (2:1.1.3-3) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxstring-perl:amd64 (0.005-2+b1) ... Removing libyaml-libyaml-perl (0.86+ds-1) ... Removing lynx-common (2.9.0dev.12-1) ... Removing maq (0.7.1-9) ... Removing mariadb-common (1:10.11.6-0+deb12u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing media-types (10.0.0) ... Removing menu (2.1.49) ... Removing mustang (3.2.4-1) ... Removing mysql-common (5.8+1.1.0) ... Removing ncbi-data (6.1.20170106+dfsg1-10) ... Removing ncoils (2002-9) ... Removing ocl-icd-libopencl1:amd64 (2.3.1-1) ... Removing openmpi-common (4.1.4-3) ... Removing pal2nal (14.1-3) ... Removing paml (4.9j+dfsg-4) ... Removing phylip (1:3.697+dfsg-2) ... Removing poa (2.0+20060928-8) ... Removing poppler-data (0.4.12-1) ... Removing prank (0.0.170427+dfsg-3) ... Removing primer3 (2.6.1-4) ... Removing probalign (1.4-10) ... Removing probcons (1.12-14) ... Removing proda (1.0-13) ... Removing psmisc (23.6-1) ... Removing publicsuffix (20230209.2326-1) ... Removing raxml (8.2.12+dfsg-8+b2) ... Removing readline-common (8.2-1.3) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.17+nmu1) ... Removing sim4 (0.0.20121010-8) ... Removing t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Removing tigr-glimmer (3.02b-6+b1) ... Removing unzip (6.0-28) ... Removing wise-data (2.4.1-23) ... Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.4.1-0.2) ... Removing zip (3.0-13) ... Removing openjdk-17-jre-headless:amd64 (17.0.10+7-1~deb12u1) ... Removing ca-certificates-java (20230710~deb12u1) ... Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing fonts-urw-base35 (20200910-7) ... Removing java-common (0.74) ... Removing libasound2:amd64 (1.2.8-1+b1) ... Removing libasound2-data (1.2.8-1) ... Removing libcups2:amd64 (2.4.2-3+deb12u5) ... Removing libavahi-client3:amd64 (0.8-10) ... Removing libavahi-common3:amd64 (0.8-10) ... Removing libavahi-common-data:amd64 (0.8-10) ... Removing libbio-perl-perl (1.7.8-1) ... Removing xfonts-utils (1:7.7+6) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libfreetype6:amd64 (2.12.1+dfsg-5) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libxml-parser-perl (2.46-4) ... Removing libdata-stag-perl (0.14-3) ... Removing libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libglib2.0-0:amd64 (2.74.6-2) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libio-string-perl (1.08-4) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing libnss3:amd64 (2:3.87.1-1) ... Removing libnspr4:amd64 (2:4.35-1) ... Removing libpcsclite1:amd64 (1.9.9-2) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libwww-perl (6.68-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing ruby-sdbm:amd64 (1.0.0-5+b1) ... Removing libfile-listing-perl (6.15-1) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.81-1) ... Removing libhtml-tagset-perl (3.20-6) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libio-socket-ssl-perl (2.081-2) ... Removing libnet-http-perl (6.22-1) ... Removing libnet-ssleay-perl:amd64 (1.92-2+b1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing perl-openssl-defaults:amd64 (7+b1) ... Removing libtry-tiny-perl (0.31-2) ... Removing netbase (6.4) ... Removing libruby3.1:amd64 (3.1.2-7) ... Removing rake (13.0.6-3) ... Removing ruby (1:3.1) ... Removing ruby-rubygems (3.3.15-2) ... Removing libhttp-message-perl (6.44-1) ... Removing libclone-perl:amd64 (0.46-1) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libencode-locale-perl (1.05-3) ... Removing libhttp-date-perl (6.05-2) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libncurses6:amd64 (6.4-4) ... Removing liburi-perl (5.17-1) ... Removing libregexp-ipv6-perl (0.03-3) ... Removing libruby:amd64 (1:3.1) ... Removing libtimedate-perl (2.3300-2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-xmlrpc (0.3.2-2) ... Removing ruby-webrick (1.8.1-1) ... Removing ruby3.1 (3.1.2-7) ... Removing rubygems-integration (1.18) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libbsd0:amd64 (0.11.7-2) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing openssl (3.0.11-1~deb12u2) ... Removing libssl3:amd64 (3.0.11-1~deb12u2) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libcommon-sense-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libev-perl:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip', 'gbrowse-data'] 2m11.4s INFO: Running scripts post_remove 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_remove_exceptions'] 2m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_remove_exceptions'] 2m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libcommon-sense-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libev-perl:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip'] 2m13.6s DUMP: dpkg: warning: ignoring request to remove alsa-topology-conf which isn't installed dpkg: warning: ignoring request to remove alsa-ucm-conf which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed (Reading database ... 6572 files and directories currently installed.) Purging configuration files for apache2 (2.4.57-2) ... dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed Purging configuration files for blends-common (0.7.5) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20230710~deb12u1) ... dpkg: warning: while removing ca-certificates-java, directory '/etc/ssl/certs' not empty so not removed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-7) ... Purging configuration files for dbus (1.14.10-1~deb12u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.14.10-1~deb12u1) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed dpkg: warning: ignoring request to remove default-jdk-headless which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.14.1-4) ... Purging configuration files for fontconfig-config (2.14.1-4) ... Purging configuration files for fonts-dejavu-core (2.37-6) ... Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation2 which isn't installed Purging configuration files for fonts-noto-mono (20201225-1) ... Purging configuration files for fonts-urw-base35 (20200910-7) ... dpkg: warning: ignoring request to remove fsa which isn't installed Purging configuration files for gawk (1:5.2.1-2) ... Purging configuration files for gbrowse (2.56+dfsg-11) ... dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.42.2-7+b3) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for hyphy-common (2.5.47+dfsg-1) ... Purging configuration files for hyphy-pt (2.5.47+dfsg-1) ... Purging configuration files for ibverbs-providers:amd64 (44.0-2) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for java-common (0.74) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove lagan which isn't installed dpkg: warning: ignoring request to remove libabsl20220623 which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.12-1+b2) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: 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warning: ignoring request to remove libbio-cluster-perl which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-biofetch-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-gff-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-seqfeature-perl which isn't installed dpkg: warning: ignoring request to remove libbio-eutilities-perl which isn't installed dpkg: warning: ignoring request to remove libbio-featureio-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-alignment-clustalw-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-remoteblast-perl which isn't installed dpkg: warning: ignoring request to remove libbio-variation-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcbor0.8 which isn't installed dpkg: warning: ignoring request to 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isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libencode-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libev-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-bin which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi0ldbl which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-sort-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs-common which isn't installed dpkg: warning: ignoring request to remove libgs10 which isn't installed dpkg: warning: ignoring request to remove libgs10-common which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed dpkg: warning: ignoring request to remove libguard-perl which isn't installed Purging configuration files for libgvc6 (2.42.2-7+b3) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libidn12 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed Purging configuration files for libldap-common (2.5.13+dfsg-5) ... dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-xs-perl which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.44-3) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.29) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre3 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.2) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librav1e0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libreadonly-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-xs-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-ipv6-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libruby which isn't installed dpkg: warning: ignoring request to remove libruby3.1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg-10) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libset-object-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstaden-read14 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-quote-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc1 which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-requiresinternet-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtypes-serialiser-perl which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx265-199 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-3) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxstring-perl which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed Purging configuration files for lynx (2.9.0dev.12-1) ... Purging configuration files for lynx-common (2.9.0dev.12-1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.11.6-0+deb12u1) ... Purging configuration files for med-config (3.8.1) ... Purging configuration files for media-types (10.0.0) ... Purging configuration files for menu (2.1.49) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.1.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-10) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove openjdk-17-jdk-headless which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.10+7-1~deb12u1) ... Purging configuration files for openmpi-bin (4.1.4-3+b1) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.2p1-2+deb12u2) ... Purging configuration files for openssl (3.0.11-1~deb12u2) ... dpkg: warning: while removing openssl, directory '/etc/ssl/private' not empty so not removed dpkg: warning: ignoring request to remove pal2nal which isn't installed dpkg: warning: ignoring request to remove paml which isn't installed Purging configuration files for perl (5.36.0-7+deb12u1) ... Purging configuration files for perl-doc (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove pftools which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.12-1) ... dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.6.1-4) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed Purging configuration files for procps (2:4.0.2-3) ... dpkg: warning: ignoring request to remove proda which isn't installed Purging configuration files for psmisc (23.6-1) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-sdbm which isn't installed dpkg: warning: ignoring request to remove ruby-webrick which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby3.1 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.2-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed Purging configuration files for ssl-cert (1.1.2) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 2m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libcommon-sense-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libev-perl:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip'] 2m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--purge', 'gbrowse-data'] 2m13.6s DUMP: dpkg: warning: ignoring request to remove gbrowse-data which isn't installed 2m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--purge', 'gbrowse-data'] 2m13.6s INFO: Running scripts post_purge 2m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_purge_exceptions'] 2m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_purge_exceptions'] 2m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--purge', '--pending'] 2m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--purge', '--pending'] 2m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--remove', '--pending'] 2m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg', '--remove', '--pending'] 2m13.6s INFO: Running scripts post_test 2m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_test_exceptions'] 2m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'tmp/scripts/post_test_exceptions'] 2m13.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 2m14.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 2m14.5s DEBUG: No broken symlinks as far as we can find. 2m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-divert', '--list'] 2m14.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'dpkg-divert', '--list'] 2m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'clean'] 2m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j', 'apt-get', 'clean'] 2m14.6s DEBUG: Recording chroot state 2m15.2s INFO: PASS: Installation and purging test. 2m15.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/shm'] 2m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/shm'] 2m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/console'] 2m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/console'] 2m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/ptmx'] 2m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/ptmx'] 2m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/pts'] 2m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/dev/pts'] 2m15.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/proc'] 2m15.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j/proc'] 2m15.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 2m15.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgpq0h77j'] 2m15.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpgpq0h77j 2m15.8s INFO: PASS: All tests. 2m15.8s INFO: piuparts run ends. ret=0 End: 2024-04-22 05:55:51 GMT