Start: 2024-09-18 05:37:00 GMT Package: libbio-db-swissprot-perl Version: 1.7.4-1 Installed-Size: 35 Maintainer: Debian Med team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libbio-perl-perl, libhttp-message-perl, libwww-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: Database object interface to SwissProt retrieval Homepage: https://metacpan.org/release/Bio-DB-SwissProt Description-md5: 561a00ce6dab79c7d90c3fda943983f2 Section: perl Priority: optional Filename: pool/main/libb/libbio-db-swissprot-perl/libbio-db-swissprot-perl_1.7.4-1_all.deb Size: 12040 MD5sum: 6746880810357bf8976c035b2ac348dc SHA256: 74a3b0b09dc5a83a2e1c3e5c11e8b0a18811c22862f92ecf5644fde1d27822fb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt libbio-db-swissprot-perl=1.7.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201642~1.4.3-11-g36a88c35 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt libbio-db-swissprot-perl=1.7.4-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppyxk_nsg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppyxk_nsg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppyxk_nsg/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'update'] 0m3.3s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8787 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 2s (8734 kB/s) Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libsystemd0 libudev1 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3873 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u7 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.30-1~deb12u2 [332 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.30-1~deb12u2 [109 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3873 kB in 0s (69.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6089 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u7_amd64.deb ... Unpacking base-files (12.4+deb12u7) over (12.4+deb12u6) ... Setting up base-files (12.4+deb12u7) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6089 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u8_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6089 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc-bin (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6089 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.30-1~deb12u2_amd64.deb ... Unpacking libsystemd0:amd64 (252.30-1~deb12u2) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (252.30-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6089 files and directories currently installed.) Preparing to unpack .../libudev1_252.30-1~deb12u2_amd64.deb ... Unpacking libudev1:amd64 (252.30-1~deb12u2) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.30-1~deb12u2) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', '-yf', 'dist-upgrade'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s DUMP: 14b5c1b94e8a6c425b0bba0e4df4ee12 - 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.4s INFO: Running scripts post_setup 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_dummy_users'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_forbid_home'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_minimize'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_minimize'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_setup_zz_backports'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'clean'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'clean'] 0m6.4s DEBUG: Recording chroot state 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.9s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u7 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.30-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.30-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-divert', '--list'] 0m6.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-divert', '--list'] 0m6.9s INFO: Running scripts is_testable 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/is_testable_uninstallable'] 0m6.9s INFO: apt-cache does not know about any of the requested packages 0m6.9s INFO: Running scripts pre_test 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_test_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_test_root_password'] 0m6.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_test_root_password'] 0m6.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 0m7.7s DEBUG: No broken symlinks as far as we can find. 0m7.7s INFO: Running scripts pre_install 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_database-server'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_database-server'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_exceptions'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_extras'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_extras'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 0m8.6s DEBUG: No broken symlinks as far as we can find. 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-cache', 'policy'] 0m9.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.7,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-cache', 'policy'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m9.3s DUMP: libbio-db-swissprot-perl: Installed: (none) Candidate: 1.7.4-1 Version table: 1.7.4-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-cache', 'policy', 'libbio-db-swissprot-perl'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl=1.7.4-1'] 1m9.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2-bin bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation2 fonts-noto-mono fonts-urw-base35 fsa gawk ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign krb5-locales lagan libabsl20220623 libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0.8 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d6 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libencode-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpfr6 libmunge2 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl2 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcsclite1 libperl5.36 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-ipv6-perl librole-tiny-perl librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl3 libstatistics-descriptive-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1 libtask-weaken-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc3 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxstring-perl libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.36 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons proda publicsuffix python3 python3-minimal python3.11 python3.11-minimal rake raxml readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xz-utils zip Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom groff-base gmap fasta3 trnascan-se blends-doc bowtie-examples bzip2-doc clustalx seaview default-dbus-session-bus | dbus-session-bus default-jre emboss-doc emboss-test embassy fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gsfonts graphviz-doc hmmer-doc apache2 | lighttpd | httpd libasound2-plugins alsa-utils libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user libhtml-element-extended-perl libhwloc-contrib-plugins liblcms2-utils libcrypt-ssleay-perl libscalar-number-perl pciutils pcscd libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libmime-lite-perl libnet-jabber-perl libdevel-lexalias-perl libbusiness-isbn-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl menu-l10n gksu | kde-cli-tools | ktsuss mustang-testdata gnuplot opencl-icd openjdk-17-demo openjdk-17-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl man-browser debhelper phylip-doc blast2 poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binutils binfmt-support readline-doc ri ruby-dev bundler cwltool boxshade t-coffee-examples pymol rasmol wise-doc Recommended packages: blast2 The following NEW packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2-bin bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation2 fonts-noto-mono fonts-urw-base35 fsa gawk ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign krb5-locales lagan libabsl20220623 libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-swissprot-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0.8 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d6 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libencode-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpfr6 libmunge2 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl2 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcsclite1 libperl5.36 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-ipv6-perl librole-tiny-perl librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl3 libstatistics-descriptive-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1 libtask-weaken-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc3 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxstring-perl libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.36 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons proda publicsuffix python3 python3-minimal python3.11 python3.11-minimal rake raxml readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xz-utils zip 0 upgraded, 473 newly installed, 0 to remove and 0 not upgraded. Need to get 382 MB of archives. After this operation, 1563 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 dbus-bin amd64 1.14.10-1~deb12u1 [105 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 dbus-session-bus-common all 1.14.10-1~deb12u1 [78.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libapparmor1 amd64 3.0.8-3 [41.2 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 dbus-daemon amd64 1.14.10-1~deb12u1 [184 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 dbus-system-bus-common all 1.14.10-1~deb12u1 [79.3 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 dbus amd64 1.14.10-1~deb12u1 [97.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.14-1~deb12u1 [2024 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:31 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:40 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.14-1~deb12u1 [1423 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 krb5-locales all 1.20.1-2+deb12u2 [62.8 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2+deb12u3 [991 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 xz-utils amd64 5.4.1-0.2 [471 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 alsa-topology-conf all 1.2.5.1-2 [15.2 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 alsa-ucm-conf all 1.2.8-1 [51.7 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libapr1 amd64 1.7.2-3 [102 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libaprutil1 amd64 1.6.3-1 [87.8 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-1 [13.6 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libaprutil1-ldap amd64 1.6.3-1 [11.8 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u7 [390 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 liblua5.3-0 amd64 5.3.6-2 [123 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 apache2-bin amd64 2.4.62-1~deb12u1 [1385 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 bedtools amd64 2.30.0+dfsg-3 [665 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:85 http://deb.debian.org/debian bookworm/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libtest-differences-perl all 0.69-1 [18.9 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 bioperl all 1.7.8-1 [246 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libio-pty-perl amd64 1:1.17-1 [34.9 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libipc-run-perl all 20220807.0-1 [104 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libfile-sort-perl all 1.01-3 [21.3 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libbio-perl-run-perl all 1.7.3-9 [605 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libbio-tools-run-alignment-clustalw-perl all 1.7.4-3 [24.6 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libfile-slurp-tiny-perl all 0.004-2 [7592 B] Get:104 http://deb.debian.org/debian bookworm/main amd64 libtree-dagnode-perl all 1.32-1 [61.7 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:106 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libencode-perl amd64 3.19-1+b1 [1416 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.68-1 [186 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libxml-parser-perl amd64 2.46-4 [201 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:132 http://deb.debian.org/debian bookworm/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libxml-dom-xpath-perl all 0.14-4 [9352 B] Get:135 http://deb.debian.org/debian bookworm/main amd64 libbio-featureio-perl all 1.6.905-2 [53.2 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libxml-twig-perl all 1:3.52-2 [181 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Get:144 http://deb.debian.org/debian bookworm/main amd64 libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libtext-csv-perl all 2.02-2 [110 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-expat-perl all 0.51-2 [11.1 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libbio-eutilities-perl all 1.77-2 [124 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libbio-tools-run-remoteblast-perl all 1.7.3-3 [17.5 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libfcgi0ldbl amd64 2.4.2-2 [26.1 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libfcgi-perl amd64 0.82+ds-2 [25.2 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libio-sessiondata-perl all 1.03-3 [6316 B] Get:156 http://deb.debian.org/debian bookworm/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:159 http://deb.debian.org/debian bookworm/main amd64 libmailtools-perl all 2.21-2 [95.6 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libmime-tools-perl all 5.510-1 [213 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libtask-weaken-perl all 1.06-2 [9364 B] Get:162 http://deb.debian.org/debian bookworm/main amd64 libsoap-lite-perl all 1.27-3 [239 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:165 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u7 [245 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u3 [398 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 fonts-liberation2 all 2.1.5-1 [1479 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:178 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u3 [1400 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.12+7-2~deb12u1 [43.7 MB] Get:189 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-74 [2936 B] Get:190 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jdk-headless amd64 17.0.12+7-2~deb12u1 [71.4 MB] Get:191 http://deb.debian.org/debian bookworm/main amd64 default-jdk-headless amd64 2:1.17-74 [1108 B] Get:192 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u7 [385 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 hyphy-common all 2.5.47+dfsg-1 [586 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 hyphy-pt amd64 2.5.47+dfsg-1 [1487 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 bioperl-run all 1.7.3-9 [40.6 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 menu amd64 2.1.49 [371 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 blends-common all 0.7.5 [25.2 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 bowtie amd64 1.3.1-1+b1 [1627 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 bwa amd64 0.7.17-7+b2 [212 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 clustalo amd64 1.2.4-7 [260 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 dialign amd64 2.2.1-11 [139 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 dialign-tx-data all 1.0.2-14 [874 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 dialign-tx amd64 1.0.2-14+b1 [86.6 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1+deb12u1 [1851 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2+deb12u1 [513 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1+deb12u2 [185 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 mysql-common all 5.8+1.1.0 [6636 B] Get:232 http://deb.debian.org/debian bookworm/main amd64 mariadb-common all 1:10.11.6-0+deb12u1 [24.4 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 libmariadb3 amd64 1:10.11.6-0+deb12u1 [174 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 libpq5 amd64 15.8-0+deb12u1 [188 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 emboss-lib amd64 6.6.0+dfsg-12 [2871 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 emboss-data all 6.6.0+dfsg-12 [61.1 MB] Get:237 http://deb.debian.org/debian bookworm/main amd64 emboss amd64 6.6.0+dfsg-12 [1069 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 fonts-noto-mono all 20201225-1 [402 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 libgs-common all 10.0.0~dfsg-11+deb12u4 [149 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 libgs10-common all 10.0.0~dfsg-11+deb12u4 [586 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 libidn12 amd64 1.41-1 [83.8 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 libjbig2dec0 amd64 0.19-3 [67.2 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 libgs10 amd64 10.0.0~dfsg-11+deb12u4 [2467 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 ghostscript amd64 10.0.0~dfsg-11+deb12u4 [57.1 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 libcdt5 amd64 2.42.2-7+deb12u1 [39.6 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 libcgraph6 amd64 2.42.2-7+deb12u1 [63.0 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get:259 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-7~deb12u1 [393 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 libpathplan4 amd64 2.42.2-7+deb12u1 [41.9 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 libgvc6 amd64 2.42.2-7+deb12u1 [679 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 libgvpr2 amd64 2.42.2-7+deb12u1 [189 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 liblab-gamut1 amd64 2.42.2-7+deb12u1 [197 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 graphviz amd64 2.42.2-7+deb12u1 [611 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 infernal amd64 1.1.4-1 [5523 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 javascript-common all 11+nmu1 [6260 B] Get:288 http://deb.debian.org/debian bookworm/main amd64 kalign amd64 1:3.3.5-1 [132 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 lagan amd64 2.0-9 [184 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 libipc-sharelite-perl amd64 0.17-5 [23.1 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 libcache-cache-perl all 1.08-3 [63.4 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 libace-perl amd64 1.92-11+b2 [283 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-xs-perl amd64 0.04-8+b1 [11.4 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-munkres-perl all 0.08-5 [11.3 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 libapache2-mod-perl2 amd64 2.0.12-1+b2 [879 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 libdbi-perl amd64 1.643-4 [773 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 libapache2-reload-perl all 0.13-4 [15.9 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 libexporter-tiny-perl all 1.006000-1 [38.6 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 libtype-tiny-perl all 2.002001-1 [377 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 libarray-compare-perl all 3.0.8-1 [14.9 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:316 http://deb.debian.org/debian bookworm/main amd64 libauthen-sasl-perl all 2.1600-3 [43.9 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:319 http://deb.debian.org/debian bookworm/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 libbio-db-swissprot-perl all 1.7.4-1 [12.0 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 libbit-vector-perl amd64 7.4-2+b1 [142 kB] Get:324 http://deb.debian.org/debian bookworm/main amd64 libbsd-resource-perl amd64 1.2911-2+b1 [31.8 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 libcgi-pm-perl all 4.55-1 [220 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 libcgi-fast-perl all 1:2.15-1 [12.1 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 libconvert-binary-c-perl amd64 0.84-1+b2 [272 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 libcrypt-rc4-perl all 2.02-5 [7480 B] Get:329 http://deb.debian.org/debian bookworm/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 libdate-calc-perl all 6.4-2 [191 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 libdate-calc-xs-perl amd64 6.4-2+b1 [52.0 kB] Get:332 http://deb.debian.org/debian bookworm/main amd64 libdate-manip-perl all 6.91-1 [912 kB] Get:333 http://deb.debian.org/debian bookworm/main amd64 libdbd-mysql-perl amd64 4.050-5+b1 [114 kB] Get:334 http://deb.debian.org/debian bookworm/main amd64 libdbd-pg-perl amd64 3.16.0-2 [209 kB] Get:335 http://deb.debian.org/debian bookworm/main amd64 libdbd-sqlite3-perl amd64 1.72-1 [179 kB] Get:336 http://deb.debian.org/debian bookworm/main amd64 libdigest-perl-md5-perl all 1.9-5 [11.7 kB] Get:337 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:338 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:339 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get:340 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:341 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get:342 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:343 http://deb.debian.org/debian bookworm/main amd64 libfcgi-bin amd64 2.4.2-2 [12.9 kB] Get:344 http://deb.debian.org/debian bookworm/main amd64 libfile-slurp-perl all 9999.32-2 [26.7 kB] Get:345 http://deb.debian.org/debian bookworm/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:346 http://deb.debian.org/debian bookworm/main amd64 libfreezethaw-perl all 0.5001-3 [16.0 kB] Get:347 http://deb.debian.org/debian bookworm/main amd64 libgd-perl amd64 2.76-4+b1 [132 kB] Get:348 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:349 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:350 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2+deb12u3 [1209 kB] Get:351 http://deb.debian.org/debian bookworm/main amd64 libgpm2 amd64 1.20.7-10+b1 [14.2 kB] Get:352 http://deb.debian.org/debian bookworm/main amd64 libheap-perl all 0.80-5 [34.3 kB] Get:353 http://deb.debian.org/debian bookworm/main amd64 libset-object-perl amd64 1.42-1+b2 [37.9 kB] Get:354 http://deb.debian.org/debian bookworm/main amd64 libgraph-perl all 1:0.9726-1 [110 kB] Get:355 http://deb.debian.org/debian bookworm/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get:356 http://deb.debian.org/debian bookworm/main amd64 libxml-xpath-perl all 1.48-1 [71.0 kB] Get:357 http://deb.debian.org/debian bookworm/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get:358 http://deb.debian.org/debian bookworm/main amd64 libgts-bin amd64 0.7.6+darcs121130-5+b1 [50.3 kB] Get:359 http://deb.debian.org/debian bookworm/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:360 http://deb.debian.org/debian bookworm/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:361 http://deb.debian.org/debian bookworm/main amd64 libhtml-tableextract-perl all 2.15-2 [30.6 kB] Get:362 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:363 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:364 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:365 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-3~deb12u1 [13.5 kB] Get:366 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get:367 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get:368 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get:369 http://deb.debian.org/debian bookworm/main amd64 libjcode-pm-perl amd64 2.06-1.1 [30.0 kB] Get:370 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:371 http://deb.debian.org/debian bookworm/main amd64 libldap-common all 2.5.13+dfsg-5 [29.3 kB] Get:372 http://deb.debian.org/debian bookworm/main amd64 liblist-moreutils-xs-perl amd64 0.430-3+b1 [42.1 kB] Get:373 http://deb.debian.org/debian bookworm/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:374 http://deb.debian.org/debian bookworm/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:375 http://deb.debian.org/debian bookworm/main amd64 libmath-derivative-perl all 1.01-3 [8060 B] Get:376 http://deb.debian.org/debian bookworm/main amd64 libmath-spline-perl all 0.02-4 [6808 B] Get:377 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB] Get:378 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB] Get:379 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB] Get:380 http://deb.debian.org/debian bookworm/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:381 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get:382 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:383 http://deb.debian.org/debian bookworm/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:384 http://deb.debian.org/debian bookworm/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:385 http://deb.debian.org/debian bookworm/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:386 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get:387 http://deb.debian.org/debian bookworm/main amd64 libole-storage-lite-perl all 0.20-2 [21.9 kB] Get:388 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+deb12u1 [622 kB] Get:389 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get:390 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get:391 http://deb.debian.org/debian bookworm/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b1 [19.8 kB] Get:392 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:393 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:394 http://deb.debian.org/debian bookworm/main amd64 libpostscript-perl all 0.06-3.1 [26.0 kB] Get:395 http://deb.debian.org/debian bookworm/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:396 http://deb.debian.org/debian bookworm/main amd64 libref-util-perl all 0.204-2 [17.4 kB] Get:397 http://deb.debian.org/debian bookworm/main amd64 libref-util-xs-perl amd64 0.117-2+b1 [14.1 kB] Get:398 http://deb.debian.org/debian bookworm/main amd64 rubygems-integration all 1.18 [6704 B] Get:399 http://deb.debian.org/debian bookworm/main amd64 ruby3.1 amd64 3.1.2-7+deb12u1 [663 kB] Get:400 http://deb.debian.org/debian bookworm/main amd64 ruby-rubygems all 3.3.15-2 [293 kB] Get:401 http://deb.debian.org/debian bookworm/main amd64 ruby amd64 1:3.1 [5868 B] Get:402 http://deb.debian.org/debian bookworm/main amd64 rake all 13.0.6-3 [83.9 kB] Get:403 http://deb.debian.org/debian bookworm/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:404 http://deb.debian.org/debian bookworm/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get:405 http://deb.debian.org/debian bookworm/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get:406 http://deb.debian.org/debian bookworm/main amd64 ruby-sdbm amd64 1.0.0-5+b1 [15.4 kB] Get:407 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:408 http://deb.debian.org/debian bookworm/main amd64 libruby3.1 amd64 3.1.2-7+deb12u1 [5400 kB] Get:409 http://deb.debian.org/debian bookworm/main amd64 libruby amd64 1:3.1 [4972 B] Get:410 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules amd64 2.1.28+dfsg-10 [66.6 kB] Get:411 http://deb.debian.org/debian bookworm/main amd64 libset-scalar-perl all 1.29-3 [32.1 kB] Get:412 http://deb.debian.org/debian bookworm/main amd64 libsort-naturally-perl all 1.03-4 [13.1 kB] Get:413 http://deb.debian.org/debian bookworm/main amd64 libspreadsheet-writeexcel-perl all 2.40-4 [503 kB] Get:414 http://deb.debian.org/debian bookworm/main amd64 libunicode-map-perl amd64 0.112-13+b1 [144 kB] Get:415 http://deb.debian.org/debian bookworm/main amd64 libspreadsheet-parseexcel-perl all 0.6500-4~deb12u1 [126 kB] Get:416 http://deb.debian.org/debian bookworm/main amd64 libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get:417 http://deb.debian.org/debian bookworm/main amd64 libsvg-perl all 2.87-1 [64.3 kB] Get:418 http://deb.debian.org/debian bookworm/main amd64 libsvg-graph-perl all 0.02-4 [105 kB] Get:419 http://deb.debian.org/debian bookworm/main amd64 libtext-csv-xs-perl amd64 1.49-1 [129 kB] Get:420 http://deb.debian.org/debian bookworm/main amd64 libtext-iconv-perl amd64 1.7-8 [14.5 kB] Get:421 http://deb.debian.org/debian bookworm/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Get:422 http://deb.debian.org/debian bookworm/main amd64 libtype-tiny-xs-perl amd64 0.025-1 [26.4 kB] Get:423 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:424 http://deb.debian.org/debian bookworm/main amd64 libxml-filter-buffertext-perl all 1.01-7 [7136 B] Get:425 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:426 http://deb.debian.org/debian bookworm/main amd64 libxml-libxslt-perl amd64 2.002001-1 [48.4 kB] Get:427 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-writer-perl all 0.57-2 [23.1 kB] Get:428 http://deb.debian.org/debian bookworm/main amd64 libxmlrpc-lite-perl all 0.717-5 [22.4 kB] Get:429 http://deb.debian.org/debian bookworm/main amd64 libxmuu1 amd64 2:1.1.3-3 [23.9 kB] Get:430 http://deb.debian.org/debian bookworm/main amd64 libxstring-perl amd64 0.005-2+b1 [8320 B] Get:431 http://deb.debian.org/debian bookworm/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:432 http://deb.debian.org/debian bookworm/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:433 http://deb.debian.org/debian bookworm/main amd64 lynx-common all 2.9.0dev.12-1 [1166 kB] Get:434 http://deb.debian.org/debian bookworm/main amd64 lynx amd64 2.9.0dev.12-1 [637 kB] Get:435 http://deb.debian.org/debian bookworm/main amd64 mafft amd64 7.505-1 [1078 kB] Get:436 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:437 http://deb.debian.org/debian bookworm/main amd64 maq amd64 0.7.1-9 [303 kB] Get:438 http://deb.debian.org/debian bookworm/main amd64 med-config all 3.8.1 [11.1 kB] Get:439 http://deb.debian.org/debian bookworm/main amd64 muscle amd64 1:5.1.0-1 [297 kB] Get:440 http://deb.debian.org/debian bookworm/main amd64 mustang amd64 3.2.4-1 [105 kB] Get:441 http://deb.debian.org/debian bookworm/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:442 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] Get:443 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+-legacy all 2.12.0+ds-3 [13.5 kB] Get:444 http://deb.debian.org/debian bookworm/main amd64 ncoils amd64 2002-9 [22.2 kB] Get:445 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get:446 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get:447 http://deb.debian.org/debian bookworm/main amd64 pal2nal all 14.1-3 [17.8 kB] Get:448 http://deb.debian.org/debian bookworm/main amd64 paml amd64 4.9j+dfsg-4 [704 kB] Get:449 http://deb.debian.org/debian bookworm/main amd64 perl-doc all 5.36.0-7+deb12u1 [7894 kB] Get:450 http://deb.debian.org/debian bookworm/main amd64 perl-tk amd64 1:804.036-1+b2 [2009 kB] Get:451 http://deb.debian.org/debian bookworm/main amd64 pftools amd64 3.2.12-1 [24.8 MB] Get:452 http://deb.debian.org/debian bookworm/main amd64 phylip amd64 1:3.697+dfsg-2 [919 kB] Get:453 http://deb.debian.org/debian bookworm/main amd64 phyml amd64 3:3.3.20220408-3 [1103 kB] Get:454 http://deb.debian.org/debian bookworm/main amd64 poa amd64 2.0+20060928-8 [53.2 kB] Get:455 http://deb.debian.org/debian bookworm/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get:456 http://deb.debian.org/debian bookworm/main amd64 primer3 amd64 2.6.1-4 [202 kB] Get:457 http://deb.debian.org/debian bookworm/main amd64 probalign amd64 1.4-10 [70.6 kB] Get:458 http://deb.debian.org/debian bookworm/main amd64 probcons amd64 1.12-14 [119 kB] Get:459 http://deb.debian.org/debian bookworm/main amd64 proda amd64 1.0-13 [64.9 kB] Get:460 http://deb.debian.org/debian bookworm/main amd64 publicsuffix all 20230209.2326-1 [126 kB] Get:461 http://deb.debian.org/debian bookworm/main amd64 raxml amd64 8.2.12+dfsg-8+b2 [1481 kB] Get:462 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Get:463 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:464 http://deb.debian.org/debian bookworm/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:465 http://deb.debian.org/debian bookworm/main amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1032 kB] Get:466 http://deb.debian.org/debian bookworm/main amd64 tigr-glimmer amd64 3.02b-6+b1 [283 kB] Get:467 http://deb.debian.org/debian bookworm/main amd64 tm-align amd64 20190822+dfsg-2 [865 kB] Get:468 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:469 http://deb.debian.org/debian bookworm/main amd64 wise-data all 2.4.1-23 [78.2 kB] Get:470 http://deb.debian.org/debian bookworm/main amd64 wise amd64 2.4.1-23 [994 kB] Get:471 http://deb.debian.org/debian bookworm/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB] Get:472 http://deb.debian.org/debian bookworm/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] Get:473 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 382 MB in 3s (111 MB/s) Selecting previously unselected package libdbus-1-3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../00-libdbus-1-3_1.14.10-1~deb12u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../01-dbus-bin_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus-bin (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../02-dbus-session-bus-common_1.14.10-1~deb12u1_all.deb ... Unpacking dbus-session-bus-common (1.14.10-1~deb12u1) ... Selecting previously unselected package libapparmor1:amd64. Preparing to unpack .../03-libapparmor1_3.0.8-3_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.8-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../04-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../05-dbus-daemon_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus-daemon (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../06-dbus-system-bus-common_1.14.10-1~deb12u1_all.deb ... Unpacking dbus-system-bus-common (1.14.10-1~deb12u1) ... Selecting previously unselected package dbus. Preparing to unpack .../07-dbus_1.14.10-1~deb12u1_amd64.deb ... Unpacking dbus (1.14.10-1~deb12u1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../08-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../09-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../10-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../11-libperl5.36_5.36.0-7+deb12u1_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u1) ... Selecting previously unselected package perl. Preparing to unpack .../12-perl_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl (5.36.0-7+deb12u1) ... Selecting previously unselected package fonts-droid-fallback. Preparing to unpack .../13-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../14-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../15-libmpfr6_4.2.0-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.2.0-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../16-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../17-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../18-libsigsegv2_2.14-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up readline-common (8.2-1.3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libsigsegv2:amd64 (2.14-1) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8278 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2_amd64.deb ... Unpacking gawk (1:5.2.1-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../libssl3_3.0.14-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.14-1~deb12u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6+deb12u2_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6+deb12u2) ... Setting up libssl3:amd64 (3.0.14-1~deb12u1) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6+deb12u2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9318 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../02-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... 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Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libapparmor1:amd64 (3.0.8-3) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-10+b1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up fonts-noto-mono (20201225-1) ... Setting up probcons (1.12-14) ... Setting up java-common (0.74) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libfcgi0ldbl:amd64 (2.4.2-2) ... Setting up poa (2.0+20060928-8) ... Setting up xdg-user-dirs (0.18-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up gawk (1:5.2.1-2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... No schema files found: doing nothing. Setting up bwa (0.7.17-7+b2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up unzip (6.0-28) ... Setting up libcbor0.8:amd64 (0.8.0-2+b1) ... Setting up libgs-common (10.0.0~dfsg-11+deb12u4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Setting up liblab-gamut1:amd64 (2.42.2-7+deb12u1) ... Setting up phylip (1:3.697+dfsg-2) ... Setting up libfcgi-bin (2.4.2-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up libapr1:amd64 (1.7.2-3) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up ncoils (2002-9) ... Setting up krb5-locales (1.20.1-2+deb12u2) ... Setting up hyphy-common (2.5.47+dfsg-1) ... Setting up file (1:5.44-3) ... Setting up libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up muscle (1:5.1.0-1) ... Setting up bzip2 (1.0.8-5+b1) ... Setting up emboss-data (6.6.0+dfsg-12) ... Setting up libldap-common (2.5.13+dfsg-5) ... Setting up probalign (1.4-10) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up librav1e0:amd64 (0.5.1-6) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ... Setting up mariadb-common (1:10.11.6-0+deb12u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libasound2-data (1.2.8-1) ... Setting up infernal (1.1.4-1) ... Setting up primer3 (2.6.1-4) ... Setting up libpcre3:amd64 (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up kalign (1:3.3.5-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libglib2.0-data (2.74.6-2+deb12u3) ... Setting up dialign-tx-data (1.0.2-14) ... Setting up libmunge2 (0.5.15-2) ... Setting up lagan (2.0-9) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up mustang (3.2.4-1) ... Setting up libmbedcrypto7:amd64 (2.28.3-1) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libjbig2dec0:amd64 (0.19-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up fonts-liberation2 (2.1.5-1) ... Setting up proda (1.0-13) ... Setting up sim4 (0.0.20121010-8) ... Setting up libpathplan4:amd64 (2.42.2-7+deb12u1) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xz-utils (5.4.1-0.2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libhwloc15:amd64 (2.9.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libidn12:amd64 (1.41-1) ... Setting up libmariadb3:amd64 (1:10.11.6-0+deb12u1) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up wise-data (2.4.1-23) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up lynx-common (2.9.0dev.12-1) ... Setting up libdav1d6:amd64 (1.0.0-2+deb12u1) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libltdl7:amd64 (2.4.7-7~deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up ruby-webrick (1.8.1-1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up alsa-topology-conf (1.2.5.1-2) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ... Setting up paml (4.9j+dfsg-4) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up dialign-tx (1.0.2-14+b1) ... Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... Setting up liblua5.3-0:amd64 (5.3.6-2) ... Setting up pal2nal (14.1-3) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up netbase (6.4) ... Setting up libcdt5:amd64 (2.42.2-7+deb12u1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up libcgraph6:amd64 (2.42.2-7+deb12u1) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... Setting up menu (2.1.49) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up libde265-0:amd64 (1.0.11-1+deb12u2) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (3.0.14-1~deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up tigr-glimmer (3.02b-6+b1) ... Setting up libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Setting up dialign (2.2.1-11) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up publicsuffix (20230209.2326-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up exonerate (2.4.0-5) ... Setting up bedtools (2.30.0+dfsg-3) ... Setting up dbus-bin (1.14.10-1~deb12u1) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up maq (0.7.1-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up raxml (8.2.12+dfsg-8+b2) ... Setting up libaprutil1:amd64 (1.6.3-1) ... Setting up libgts-bin (0.7.6+darcs121130-5+b1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libavif15:amd64 (0.11.1-1) ... Setting up libmbedx509-1:amd64 (2.28.3-1) ... Setting up libmbedtls14:amd64 (2.28.3-1) ... Setting up alsa-ucm-conf (1.2.8-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up wise (2.4.1-23) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up dbus-daemon (1.14.10-1~deb12u1) ... Setting up clustalo (1.2.4-7) ... Setting up tm-align (20190822+dfsg-2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.3-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Setting up dbus (1.14.10-1~deb12u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up ucf (3.0043+nmu1) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libgvpr2:amd64 (2.42.2-7+deb12u1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u7) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up lynx (2.9.0dev.12-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (44.0-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up openssh-client (1:9.2p1-2+deb12u3) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up libpq5:amd64 (15.8-0+deb12u1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u7) ... Setting up rubygems-integration (1.18) ... Setting up hyphy-pt (2.5.47+dfsg-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libaprutil1-ldap:amd64 (1.6.3-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libset-object-perl (1.42-1+b2) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libref-util-perl (0.204-2) ... Setting up libxml-xpathengine-perl (0.14-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libencode-perl:amd64 (3.19-1+b1) ... Setting up libcrypt-rc4-perl (2.02-5) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up liblist-moreutils-xs-perl (0.430-3+b1) ... Setting up libmath-derivative-perl (1.01-3) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libset-scalar-perl (1.29-3) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libcups2:amd64 (2.4.2-3+deb12u7) ... Setting up libsub-name-perl:amd64 (0.26-2+b1) ... Setting up libtype-tiny-xs-perl:amd64 (0.025-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up xauth (1:1.1.2-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libfcgi-perl (0.82+ds-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libcarp-clan-perl (6.08-2) ... Setting up emboss-lib (6.6.0+dfsg-12) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libexporter-tiny-perl (1.006000-1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libpostscript-perl (0.06-3.1) ... Setting up libsort-naturally-perl (1.03-4) ... Setting up liburi-perl (5.17-1) ... Setting up libdbi-perl:amd64 (1.643-4) ... Setting up libdate-manip-perl (6.91-1) ... Setting up libfile-sort-perl (1.01-3) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libtext-csv-perl (2.02-2) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libmath-spline-perl (0.02-4) ... Setting up libjcode-pm-perl (2.06-1.1) ... Setting up libio-sessiondata-perl (1.03-3) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libfile-slurp-perl (9999.32-2) ... Setting up libtie-ixhash-perl (1.23-4) ... Setting up libtask-weaken-perl (1.06-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up emboss (6.6.0+dfsg-12) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libconvert-binary-c-perl (0.84-1+b2) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libfont-afm-perl (1.20-4) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libclass-method-modifiers-perl (2.14-1) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libref-util-xs-perl (0.117-2+b1) ... Setting up libalgorithm-munkres-perl (0.08-5) ... Setting up perl-tk (1:804.036-1+b2) ... Setting up libio-pty-perl (1:1.17-1) ... Setting up mafft (7.505-1) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libauthen-sasl-perl (2.1600-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up libfile-slurp-tiny-perl (0.004-2) ... Setting up libipc-sharelite-perl (0.17-5) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up libheap-perl (0.80-5) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libtype-tiny-perl (2.002001-1) ... Setting up perl-doc (5.36.0-7+deb12u1) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libsvg-perl (2.87-1) ... Setting up libnet-http-perl (6.22-1) ... Setting up libbsd-resource-perl (1.2911-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libdbd-pg-perl (3.16.0-2) ... Setting up libtext-csv-xs-perl:amd64 (1.49-1) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up libexception-class-perl (1.45-1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libxstring-perl:amd64 (0.005-2+b1) ... Setting up libgraph-perl (1:0.9726-1) ... Setting up apache2-bin (2.4.62-1~deb12u1) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up libyaml-perl (1.30-2) ... Setting up libspreadsheet-writeexcel-perl (2.40-4) ... Setting up samtools (1.16.1-1) ... Setting up libbit-vector-perl:amd64 (7.4-2+b1) ... Setting up libfreezethaw-perl (0.5001-3) ... Setting up liberror-perl (0.17029-2) ... Setting up libdigest-perl-md5-perl (1.9-5) ... Setting up libgd-perl (2.76-4+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libreadonly-perl (2.050-3) ... Setting up libunicode-map-perl (0.112-13+b1) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libgvc6 (2.42.2-7+deb12u1) ... Setting up libdbd-mysql-perl:amd64 (4.050-5+b1) ... Setting up libipc-run-perl (20220807.0-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.12+7-2~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libole-storage-lite-perl (0.20-2) ... Setting up libspreadsheet-parseexcel-perl (0.6500-4~deb12u1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtree-dagnode-perl (1.32-1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up pftools (3.2.12-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libdbd-sqlite3-perl:amd64 (1.72-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libalgorithm-diff-xs-perl:amd64 (0.04-8+b1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libbio-perl-run-perl (1.7.3-9) ... Setting up graphviz (2.42.2-7+deb12u1) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libgs10-common (10.0.0~dfsg-11+deb12u4) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up libdate-calc-perl (6.4-2) ... Setting up libcache-cache-perl (1.08-3) ... Setting up libpmix2:amd64 (4.2.2-1+deb12u1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdate-calc-xs-perl:amd64 (6.4-2+b1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libtest-differences-perl (0.69-1) ... Setting up python3 (3.11.2-1+b1) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up libbio-tools-run-alignment-clustalw-perl (1.7.4-3) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libmailtools-perl (2.21-2) ... Setting up libxml-filter-buffertext-perl (1.01-7) ... Setting up libace-perl (1.92-11+b2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-2) ... Setting up libhttp-daemon-perl (6.16-1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20220408-3) ... Setting up libgs10:amd64 (10.0.0~dfsg-11+deb12u4) ... Setting up ncbi-blast+-legacy (2.12.0+ds-3) ... Setting up libxml-sax-writer-perl (0.57-2) ... Setting up libsvg-graph-perl (0.02-4) ... Setting up bowtie (1.3.1-1+b1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libtest-most-perl (0.38-1) ... Setting up libcgi-fast-perl (1:2.15-1) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up ghostscript (10.0.0~dfsg-11+deb12u4) ... Setting up libmime-tools-perl (5.510-1) ... Setting up libarray-compare-perl (3.0.8-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libxml-libxslt-perl:amd64 (2.002001-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up bioperl (1.7.8-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libruby3.1:amd64 (3.1.2-7+deb12u1) ... Setting up libruby:amd64 (1:3.1) ... Setting up libwww-perl (6.68-1) ... Setting up libapache2-mod-perl2 (2.0.12-1+b2) ... Setting up libapache2-reload-perl (0.13-4) ... Setting up libbio-tools-run-remoteblast-perl (1.7.3-3) ... Setting up ruby3.1 (3.1.2-7+deb12u1) ... Setting up libbio-db-swissprot-perl (1.7.4-1) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b1) ... Setting up libxml-parser-perl (2.46-4) ... Setting up libxml-twig-perl (1:3.52-2) ... Setting up libxml-xpath-perl (1.48-1) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libapache-dbi-perl (1.12-3) ... Setting up ruby (1:3.1) ... Setting up rake (13.0.6-3) ... Setting up libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-4) ... Setting up libsoap-lite-perl (1.27-3) ... Setting up libgraphviz-perl (2.24-1) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libbio-asn1-entrezgene-perl (1.730-2) ... Setting up ruby-rubygems (3.3.15-2) ... Setting up libxml-dom-xpath-perl (0.14-4) ... Setting up libbio-eutilities-perl (1.77-2) ... Setting up libxmlrpc-lite-perl (0.717-5) ... Setting up libbio-featureio-perl (1.6.905-2) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:amd64 (17.0.12+7-2~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-74) ... Setting up default-jdk-headless (2:1.17-74) ... Setting up bioperl-run (1.7.3-9) ... Processing triggers for menu (2.1.49) ... Setting up blends-common (0.7.5) ... Setting up med-config (3.8.1) ... Adding group `med' (GID 153) ... Done. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', '-y', 'install', 'libbio-db-swissprot-perl=1.7.4-1'] 1m9.6s INFO: Running scripts post_install 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_install_exceptions'] 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_install_exceptions'] 1m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 1m11.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 1m14.6s ERROR: WARN: Broken symlinks: /usr/share/doc/libucx0/README -> README.md (libucx0:amd64) /usr/lib/jvm/java-17-openjdk-amd64/lib/src.zip -> ../../openjdk-17/src.zip (openjdk-17-jdk-headless:amd64) 1m14.7s INFO: /bin converted to /usr/bin by /usr merge 1m14.7s INFO: /lib converted to /usr/lib by /usr merge 1m14.7s INFO: /lib/firmware converted to /usr/lib/firmware by /usr merge 1m14.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m14.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m14.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m14.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m14.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m14.7s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 1m14.7s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 1m14.7s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m14.7s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m14.7s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m14.7s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m14.7s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m14.7s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m14.7s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m14.7s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m14.7s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m14.7s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m14.7s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m14.7s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m14.7s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m14.7s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m14.7s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m14.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m14.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m14.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m14.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m14.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m14.7s INFO: /sbin converted to /usr/sbin by /usr merge 1m16.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', '-ac', '--ignore-obsolete'] 1m21.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', '-ac', '--ignore-obsolete'] 1m21.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m21.8s DUMP: 0.15.6 1m21.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m21.8s INFO: Running adequate version 0.15.6 now. 1m21.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'libbio-db-swissprot-perl'] 1m21.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'libbio-db-swissprot-perl'] 1m21.9s INFO: Running scripts pre_remove 1m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_exceptions'] 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/pre_remove_exceptions'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m32.2s DUMP: install ok installed adduser adduser 3.134 install ok installed alsa-topology-conf alsa-topology-conf 1.2.5.1-2 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.8-1 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-2 install ok installed apache2-bin apache2-bin 2.4.62-1~deb12u1 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u7 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bedtools bedtools 2.30.0+dfsg-3 install ok installed bioperl bioperl 1.7.8-1 install ok installed bioperl-run bioperl-run 1.7.3-9 install ok installed blends-common blends-common 0.7.5 install ok installed bowtie bowtie 1.3.1-1+b1 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed bwa bwa 0.7.17-7+b2 install ok installed bzip2 bzip2 1.0.8-5+b1 install ok installed ca-certificates ca-certificates 20230311 install ok installed ca-certificates-java ca-certificates-java 20230710~deb12u1 install ok installed clustalo clustalo 1.2.4-7 install ok installed clustalw clustalw 2.1+lgpl-7 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed dbus dbus 1.14.10-1~deb12u1 install ok installed dbus-bin dbus-bin 1.14.10-1~deb12u1 install ok installed dbus-daemon dbus-daemon 1.14.10-1~deb12u1 install ok installed dbus-session-bus-common dbus-session-bus-common 1.14.10-1~deb12u1 install ok installed dbus-system-bus-common dbus-system-bus-common 1.14.10-1~deb12u1 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed default-jdk-headless default-jdk-headless 2:1.17-74 install ok installed default-jre-headless default-jre-headless 2:1.17-74 install ok installed dialign dialign 2.2.1-11 install ok installed dialign-tx dialign-tx 1.0.2-14+b1 install ok installed dialign-tx-data dialign-tx-data 1.0.2-14 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed emboss emboss 6.6.0+dfsg-12 install ok installed emboss-data emboss-data 6.6.0+dfsg-12 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-12 install ok installed exonerate exonerate 2.4.0-5 install ok installed file file 1:5.44-3 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig fontconfig 2.14.1-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-6 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-liberation2 fonts-liberation2 2.1.5-1 install ok installed fonts-noto-mono fonts-noto-mono 20201225-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed fsa fsa 1.15.9+dfsg-6 install ok installed gawk gawk 1:5.2.1-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed ghostscript ghostscript 10.0.0~dfsg-11+deb12u4 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed graphviz graphviz 2.42.2-7+deb12u1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hmmer hmmer 3.3.2+dfsg-1 install ok installed hostname hostname 3.23+nmu1 install ok installed hyphy-common hyphy-common 2.5.47+dfsg-1 install ok installed hyphy-pt hyphy-pt 2.5.47+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 44.0-2 install ok installed infernal infernal 1.1.4-1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed java-common java-common 0.74 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kalign kalign 1:3.3.5-1 install ok installed krb5-locales krb5-locales 1.20.1-2+deb12u2 install ok installed lagan lagan 2.0-9 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-1 install ok installed libace-perl libace-perl 1.92-11+b2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl:amd64 libalgorithm-diff-xs-perl 0.04-8+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-5 install ok installed libann0 libann0 1.1.2+doc-9+b1 install ok installed libaom3:amd64 libaom3 3.6.0-1+deb12u1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-3 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.12-1+b2 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-4 install ok installed libapparmor1:amd64 libapparmor1 3.0.8-3 install ok installed libapr1:amd64 libapr1 1.7.2-3 install ok installed libaprutil1:amd64 libaprutil1 1.6.3-1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.3-1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.3-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libargtable2-0 libargtable2-0 13-1.1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.8-1 install ok installed libasound2:amd64 libasound2 1.2.8-1+b1 install ok installed libasound2-data libasound2-data 1.2.8-1 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-3 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-10 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-10 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-10 install ok installed libavif15:amd64 libavif15 0.11.1-1 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.26-1 install ok installed libb-hooks-op-check-perl:amd64 libb-hooks-op-check-perl 0.22-2+b1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.730-2 install ok installed libbio-cluster-perl libbio-cluster-perl 1.7.3-6 install ok installed libbio-db-swissprot-perl libbio-db-swissprot-perl 1.7.4-1 install ok installed libbio-eutilities-perl libbio-eutilities-perl 1.77-2 install ok installed libbio-featureio-perl libbio-featureio-perl 1.6.905-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-1 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.3-9 install ok installed libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-clustalw-perl 1.7.4-3 install ok installed libbio-tools-run-remoteblast-perl libbio-tools-run-remoteblast-perl 1.7.3-3 install ok installed libbio-variation-perl libbio-variation-perl 1.7.5-3 install ok installed libbit-vector-perl:amd64 libbit-vector-perl 7.4-2+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-2+b1 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libcache-cache-perl libcache-cache-perl 1.08-3 install ok installed libcairo2:amd64 libcairo2 1.16.0-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-2 install ok installed libcarp-clan-perl libcarp-clan-perl 6.08-2 install ok installed libcbor0.8:amd64 libcbor0.8 0.8.0-2+b1 install ok installed libcdt5:amd64 libcdt5 2.42.2-7+deb12u1 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.15-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.55-1 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-7+deb12u1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.36-3 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.14-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-4+b1 install ok installed libclone-perl:amd64 libclone-perl 0.46-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.84-1+b2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-3 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libcups2:amd64 libcups2 2.4.2-3+deb12u7 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u7 install ok installed libcurl4:amd64 libcurl4 7.88.1-10+deb12u7 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-3 install ok installed libdate-calc-perl libdate-calc-perl 6.4-2 install ok installed libdate-calc-xs-perl:amd64 libdate-calc-xs-perl 6.4-2+b1 install ok installed libdate-manip-perl libdate-manip-perl 6.91-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdav1d6:amd64 libdav1d6 1.0.0-2+deb12u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-5+b1 install ok installed libdbd-pg-perl libdbd-pg-perl 3.16.0-2 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.72-1 install ok installed libdbi-perl:amd64 libdbi-perl 1.643-4 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-1~deb12u1 install ok installed libde265-0:amd64 libde265-0 1.0.11-1+deb12u2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libdevel-callchecker-perl:amd64 libdevel-callchecker-perl 0.008-2 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0400-2 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-5 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-5 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-3 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libencode-perl:amd64 libencode-perl 3.19-1+b1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-8 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-8 install ok installed libexception-class-perl libexception-class-perl 1.45-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.006000-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libfabric1:amd64 libfabric1 1.17.0-3 install ok installed libfcgi-bin libfcgi-bin 2.4.2-2 install ok installed libfcgi-perl libfcgi-perl 0.82+ds-2 install ok installed libfcgi0ldbl:amd64 libfcgi0ldbl 2.4.2-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfido2-1:amd64 libfido2-1 1.12.0-2+b1 install ok installed libfile-listing-perl libfile-listing-perl 6.15-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.32-2 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-2 install ok installed libfile-sort-perl libfile-sort-perl 1.01-3 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5+deb12u3 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgd-perl libgd-perl 2.76-4+b1 install ok installed libgd3:amd64 libgd3 2.3.3-9 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u3 install ok installed libglib2.0-data libglib2.0-data 2.74.6-2+deb12u3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-10+b1 install ok installed libgraph-perl libgraph-perl 1:0.9726-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgraphviz-perl libgraphviz-perl 2.24-1 install ok installed libgs-common libgs-common 10.0.0~dfsg-11+deb12u4 install ok installed libgs10:amd64 libgs10 10.0.0~dfsg-11+deb12u4 install ok installed libgs10-common libgs10-common 10.0.0~dfsg-11+deb12u4 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-5+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-5+b1 install ok installed libgvc6 libgvc6 2.42.2-7+deb12u1 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-7+deb12u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libheap-perl libheap-perl 0.80-5 install ok installed libheif1:amd64 libheif1 1.15.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.11-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.81-1 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-6 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-2 install ok installed libhttp-message-perl libhttp-message-perl 6.44-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.9.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.9.0-1 install ok installed libibverbs1:amd64 libibverbs1 44.0-2 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn12:amd64 libidn12 1.41-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-15 install ok installed libimport-into-perl libimport-into-perl 1.002005-2 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-pty-perl libio-pty-perl 1:1.17-1 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.081-2 install ok installed libio-string-perl libio-string-perl 1.08-4 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20220807.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-5 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.19-3 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.2-7+deb12u1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed libldap-common libldap-common 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.430-2 install ok installed liblist-moreutils-xs-perl liblist-moreutils-xs-perl 0.430-3+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed libltdl7:amd64 libltdl7 2.4.7-7~deb12u1 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.6-2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmagic-mgc libmagic-mgc 1:5.44-3 install ok installed libmagic1:amd64 libmagic1 1:5.44-3 install ok installed libmailtools-perl libmailtools-perl 2.21-2 install ok installed libmariadb3:amd64 libmariadb3 1:10.11.6-0+deb12u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-3 install ok installed libmath-spline-perl libmath-spline-perl 0.02-4 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.3-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.3-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.3-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmime-tools-perl libmime-tools-perl 5.510-1 install ok installed libmldbm-perl libmldbm-perl 2.05-4 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-2 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-2 install ok installed libmoo-perl libmoo-perl 2.005005-1 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libmunge2 libmunge2 0.5.15-2 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-2 install ok installed libncurses6:amd64 libncurses6 6.4-4 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnet-http-perl libnet-http-perl 6.22-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.92-2+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.2+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1 install ok installed libnss3:amd64 libnss3 2:3.87.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.20-2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.4-3+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpackage-stash-perl libpackage-stash-perl 0.40-1 install ok installed libpackage-stash-xs-perl:amd64 libpackage-stash-xs-perl 0.30-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.12+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.12+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.12+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libparams-classify-perl:amd64 libparams-classify-perl 0.015-2+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-4 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-7+deb12u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.9-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpmix2:amd64 libpmix2 4.2.2-1+deb12u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpostscript-perl libpostscript-perl 0.06-3.1 install ok installed libpq5:amd64 libpq5 15.8-0+deb12u1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.2 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed librav1e0:amd64 librav1e0 0.5.1-6 install ok installed librdmacm1:amd64 librdmacm1 44.0-2 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed libreadonly-perl libreadonly-perl 2.050-3 install ok installed libref-util-perl libref-util-perl 0.204-2 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-2+b1 install ok installed libregexp-ipv6-perl libregexp-ipv6-perl 0.03-3 install ok installed librole-tiny-perl librole-tiny-perl 2.002004-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libruby:amd64 libruby 1:3.1 install ok installed libruby3.1:amd64 libruby3.1 3.1.2-7+deb12u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libset-object-perl libset-object-perl 1.42-1+b2 install ok installed libset-scalar-perl libset-scalar-perl 1.29-3 install ok installed libsigsegv2:amd64 libsigsegv2 2.14-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-3 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-4 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-4~deb12u1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.14-1~deb12u1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0800-1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-3 install ok installed libsub-identify-perl libsub-identify-perl 0.14-3 install ok installed libsub-name-perl:amd64 libsub-name-perl 0.26-2+b1 install ok installed libsub-quote-perl libsub-quote-perl 2.006008-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-3 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-4 install ok installed libsvg-perl libsvg-perl 2.87-1 install ok installed libsvtav1enc1:amd64 libsvtav1enc1 1.4.1+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 252.30-1~deb12u2 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtest-deep-perl libtest-deep-perl 1.204-1 install ok installed libtest-differences-perl libtest-differences-perl 0.69-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-3 install ok installed libtest-most-perl libtest-most-perl 0.38-1 install ok installed libtest-requiresinternet-perl libtest-requiresinternet-perl 0.05-4 install ok installed libtest-warn-perl libtest-warn-perl 0.37-2 install ok installed libtext-csv-perl libtext-csv-perl 2.02-2 install ok installed libtext-csv-xs-perl:amd64 libtext-csv-xs-perl 1.49-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-2 install ok installed libtext-iconv-perl:amd64 libtext-iconv-perl 1.7-8 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-4 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.32-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-2 install ok installed libtype-tiny-perl libtype-tiny-perl 2.002001-1 install ok installed libtype-tiny-xs-perl:amd64 libtype-tiny-xs-perl 0.025-1 install ok installed libucx0:amd64 libucx0 1.13.1-1 install ok installed libudev1:amd64 libudev1 252.30-1~deb12u2 install ok installed libunicode-map-perl libunicode-map-perl 0.112-13+b1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed liburi-perl liburi-perl 5.17-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libvariable-magic-perl libvariable-magic-perl 0.63-1+b1 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwww-perl libwww-perl 6.68-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libx265-199:amd64 libx265-199 3.5-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.14-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml-dom-perl libxml-dom-perl 1.46-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-4 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-7 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0207+dfsg+really+2.0134-1+b1 install ok installed libxml-libxslt-perl:amd64 libxml-libxslt-perl 2.002001-1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-2 install ok installed libxml-parser-perl libxml-parser-perl 2.46-4 install ok installed libxml-perl libxml-perl 0.08-4 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1.1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-3 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-2 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-3 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-2 install ok installed libxml-simple-perl libxml-simple-perl 2.25-2 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-2 install ok installed libxml-writer-perl libxml-writer-perl 0.900-2 install ok installed libxml-xpath-perl libxml-xpath-perl 1.48-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-2 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-5 install ok installed libxmu6:amd64 libxmu6 2:1.1.3-3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.3-3 install ok installed libxnvctrl0:amd64 libxnvctrl0 525.85.05-3~deb12u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb12u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxstring-perl:amd64 libxstring-perl 0.005-2+b1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.86+ds-1 install ok installed libyaml-perl libyaml-perl 1.30-2 install ok installed libyuv0:amd64 libyuv0 0.0~git20230123.b2528b0-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed lynx lynx 2.9.0dev.12-1 install ok installed lynx-common lynx-common 2.9.0dev.12-1 install ok installed mafft mafft 7.505-1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed maq maq 0.7.1-9 install ok installed mariadb-common mariadb-common 1:10.11.6-0+deb12u1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed med-config med-config 3.8.1 install ok installed media-types media-types 10.0.0 install ok installed menu menu 2.1.49 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed mummer mummer 3.23+dfsg-8 install ok installed muscle muscle 1:5.1.0-1 install ok installed mustang mustang 3.2.4-1 install ok installed mysql-common mysql-common 5.8+1.1.0 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-3+b1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.12.0+ds-3 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncoils ncoils 2002-9 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed netbase netbase 6.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.1-1 install ok installed openjdk-17-jdk-headless:amd64 openjdk-17-jdk-headless 17.0.12+7-2~deb12u1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.12+7-2~deb12u1 install ok installed openmpi-bin openmpi-bin 4.1.4-3+b1 install ok installed openmpi-common openmpi-common 4.1.4-3 install ok installed openssh-client openssh-client 1:9.2p1-2+deb12u3 install ok installed openssl openssl 3.0.14-1~deb12u1 install ok installed pal2nal pal2nal 14.1-3 install ok installed paml paml 4.9j+dfsg-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-doc perl-doc 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b1 install ok installed perl-tk perl-tk 1:804.036-1+b2 install ok installed pftools pftools 3.2.12-1 install ok installed phylip phylip 1:3.697+dfsg-2 install ok installed phyml phyml 3:3.3.20220408-3 install ok installed poa poa 2.0+20060928-8 install ok installed poppler-data poppler-data 0.4.12-1 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed primer3 primer3 2.6.1-4 install ok installed probalign probalign 1.4-10 install ok installed probcons probcons 1.12-14 install ok installed proda proda 1.0-13 install ok installed publicsuffix publicsuffix 20230209.2326-1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed rake rake 13.0.6-3 install ok installed raxml raxml 8.2.12+dfsg-8+b2 install ok installed readline-common readline-common 8.2-1.3 install ok installed ruby ruby 1:3.1 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-rubygems ruby-rubygems 3.3.15-2 install ok installed ruby-sdbm:amd64 ruby-sdbm 1.0.0-5+b1 install ok installed ruby-webrick ruby-webrick 1.8.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.2-2 install ok installed ruby3.1 ruby3.1 3.1.2-7+deb12u1 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed samtools samtools 1.16.1-1 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed sim4 sim4 0.0.20121010-8 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed t-coffee t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tigr-glimmer tigr-glimmer 3.02b-6+b1 install ok installed tm-align tm-align 20190822+dfsg-2 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed wise wise 2.4.1-23 install ok installed wise-data wise-data 2.4.1-23 install ok installed x11-common x11-common 1:7.7+23 install ok installed xauth xauth 1:1.1.2-1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xz-utils xz-utils 5.4.1-0.2 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 1m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstatistics-descriptive-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip', 'libbio-db-swissprot-perl'] 1m37.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: alsa-topology-conf alsa-ucm-conf amap-align apache2-bin bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation2 fonts-noto-mono fonts-urw-base35 fsa gawk ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign krb5-locales lagan libabsl20220623 libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libaom3 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libavif15 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-swissprot-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0.8 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdav1d6 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libencode-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs-common libgs10 libgs10-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif1 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu72 libidn12 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpfr6 libmunge2 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnsl2 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcre3 libpcsclite1 libperl5.36 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 librav1e0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl libregexp-ipv6-perl librole-tiny-perl librtmp1 libruby libruby3.1 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl3 libstatistics-descriptive-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libsvtav1enc1 libtask-weaken-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff6 libtimedate-perl libtirpc-common libtirpc3 libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxstring-perl libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl libyuv0 lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-17-jdk-headless openjdk-17-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.36 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons proda publicsuffix python3 python3-minimal python3.11 python3.11-minimal rake raxml readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xfonts-encodings xfonts-utils xz-utils zip 0 upgraded, 0 newly installed, 473 to remove and 0 not upgraded. After this operation, 1563 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31986 files and directories currently installed.) Removing alsa-topology-conf (1.2.5.1-2) ... Removing alsa-ucm-conf (1.2.8-1) ... Removing amap-align (2.2+git20080214.600fc29+dfsg-2) ... Removing libapache2-reload-perl (0.13-4) ... Removing libapache-dbi-perl (1.12-3) ... Removing libapache2-mod-perl2 (2.0.12-1+b2) ... Removing apache2-bin (2.4.62-1~deb12u1) ... Removing bedtools (2.30.0+dfsg-3) ... Removing bioperl-run (1.7.3-9) ... Removing bioperl (1.7.8-1) ... Removing med-config (3.8.1) ... Removing blends-common (0.7.5) ... Removing bowtie (1.3.1-1+b1) ... Removing bwa (0.7.17-7+b2) ... Removing bzip2 (1.0.8-5+b1) ... Removing default-jdk-headless (2:1.17-74) ... Removing openjdk-17-jdk-headless:amd64 (17.0.12+7-2~deb12u1) ... Removing clustalo (1.2.4-7) ... Removing libbio-tools-run-alignment-clustalw-perl (1.7.4-3) ... Removing clustalw (2.1+lgpl-7) ... Removing dbus (1.14.10-1~deb12u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dbus-daemon (1.14.10-1~deb12u1) ... Removing dbus-bin (1.14.10-1~deb12u1) ... Removing dbus-session-bus-common (1.14.10-1~deb12u1) ... Removing dbus-system-bus-common (1.14.10-1~deb12u1) ... Removing default-jre-headless (2:1.17-74) ... Removing dialign (2.2.1-11) ... Removing dialign-tx (1.0.2-14+b1) ... Removing dialign-tx-data (1.0.2-14) ... Removing emboss (6.6.0+dfsg-12) ... Removing emboss-data (6.6.0+dfsg-12) ... Removing emboss-lib (6.6.0+dfsg-12) ... Removing fsa (1.15.9+dfsg-6) ... Removing exonerate (2.4.0-5) ... Removing file (1:5.44-3) ... Removing libgraphviz-perl (2.24-1) ... Removing graphviz (2.42.2-7+deb12u1) ... Removing libgvc6 (2.42.2-7+deb12u1) ... Removing libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.12+ds-1) ... Removing fontconfig (2.14.1-4) ... Removing perl-tk (1:804.036-1+b2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libgd-perl (2.76-4+b1) ... Removing libgd3:amd64 (2.3.3-9) ... Removing fonts-dejavu-core (2.37-6) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.0-2.1) ... Removing fonts-liberation2 (2.1.5-1) ... Removing fonts-noto-mono (20201225-1) ... Removing ghostscript (10.0.0~dfsg-11+deb12u4) ... Removing libgs10:amd64 (10.0.0~dfsg-11+deb12u4) ... Removing libgs10-common (10.0.0~dfsg-11+deb12u4) ... Removing mummer (3.23+dfsg-8) ... Removing gawk (1:5.2.1-2) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing hmmer (3.3.2+dfsg-1) ... Removing hyphy-pt (2.5.47+dfsg-1) ... Removing hyphy-common (2.5.47+dfsg-1) ... Removing phyml (3:3.3.20220408-3) ... Removing openmpi-bin (4.1.4-3+b1) ... Removing libopenmpi3:amd64 (4.1.4-3+b1) ... Removing libucx0:amd64 (1.13.1-1) ... Removing libfabric1:amd64 (1.17.0-3) ... Removing ibverbs-providers:amd64 (44.0-2) ... Removing infernal (1.1.4-1) ... Removing javascript-common (11+nmu1) ... Removing kalign (1:3.3.5-1) ... Removing krb5-locales (1.20.1-2+deb12u2) ... Removing lagan (2.0-9) ... Removing libavif15:amd64 (0.11.1-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-1) ... Removing libace-perl (1.92-11+b2) ... Removing libtest-most-perl (0.38-1) ... Removing libtest-differences-perl (0.69-1) ... Removing libtext-diff-perl (1.45-2) ... Removing libalgorithm-diff-xs-perl:amd64 (0.04-8+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libalgorithm-munkres-perl (0.08-5) ... Removing libann0 (1.1.2+doc-9+b1) ... Removing libheif1:amd64 (1.15.1-1) ... Removing libaom3:amd64 (3.6.0-1+deb12u1) ... Removing libapparmor1:amd64 (3.0.8-3) ... Removing libaprutil1-ldap:amd64 (1.6.3-1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.3-1) ... Removing libaprutil1:amd64 (1.6.3-1) ... Removing libapr1:amd64 (1.7.2-3) ... Removing libargtable2-0 (13-1.1) ... Removing libarray-compare-perl (3.0.8-1) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libauthen-sasl-perl (2.1600-3) ... Removing libnamespace-clean-perl (0.27-2) ... Removing libb-hooks-endofscope-perl (0.26-1) ... Removing libpackage-stash-perl (0.40-1) ... Removing libmodule-implementation-perl (0.09-2) ... Removing libmoo-perl (2.005005-1) ... Removing libimport-into-perl (1.002005-2) ... Removing libmodule-runtime-perl (0.016-2) ... Removing libparams-classify-perl:amd64 (0.015-2+b1) ... Removing libdevel-callchecker-perl:amd64 (0.008-2) ... Removing libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Removing libbio-eutilities-perl (1.77-2) ... Removing libbio-asn1-entrezgene-perl (1.730-2) ... Removing libbio-cluster-perl (1.7.3-6) ... Removing libbio-db-swissprot-perl (1.7.4-1) ... Removing libbio-featureio-perl (1.6.905-2) ... Removing libbio-variation-perl (1.7.5-3) ... Removing libbio-tools-run-remoteblast-perl (1.7.3-3) ... Removing libbio-perl-run-perl (1.7.3-9) ... Removing libdate-calc-xs-perl:amd64 (6.4-2+b1) ... Removing libdate-calc-perl (6.4-2) ... Removing libbit-vector-perl:amd64 (7.4-2+b1) ... Removing libcurl4:amd64 (7.88.1-10+deb12u7) ... Removing libbsd-resource-perl (1.2911-2+b1) ... Removing lynx (2.9.0dev.12-1) ... Removing xauth (1:1.1.2-1) ... Removing libcache-cache-perl (1.08-3) ... Removing libcairo2:amd64 (1.16.0-7) ... Removing libcapture-tiny-perl (0.48-2) ... Removing libcarp-clan-perl (6.08-2) ... Removing openssh-client (1:9.2p1-2+deb12u3) ... Removing libfido2-1:amd64 (1.12.0-2+b1) ... Removing libcbor0.8:amd64 (0.8.0-2+b1) ... Removing libgvpr2:amd64 (2.42.2-7+deb12u1) ... Removing libcgraph6:amd64 (2.42.2-7+deb12u1) ... Removing libcdt5:amd64 (2.42.2-7+deb12u1) ... Removing libcgi-fast-perl (1:2.15-1) ... Removing libcgi-pm-perl (4.55-1) ... Removing libexception-class-perl (1.45-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-5) ... Removing libsoap-lite-perl (1.27-3) ... Removing libclass-inspector-perl (1.36-3) ... Removing librole-tiny-perl (2.002004-1) ... Removing libclass-method-modifiers-perl (2.14-1) ... Removing libclass-xsaccessor-perl (1.19-4+b1) ... Removing libxml-xpath-perl (1.48-1) ... Removing libxml-twig-perl (1:3.52-2) ... Removing libxml-dom-xpath-perl (0.14-4) ... Removing libxml-dom-perl (1.46-2) ... Removing libconvert-binary-c-perl (0.84-1+b2) ... Removing libmime-tools-perl (5.510-1) ... Removing libconvert-binhex-perl (1.125-3) ... Removing libspreadsheet-parseexcel-perl (0.6500-4~deb12u1) ... Removing libcrypt-rc4-perl (2.02-5) ... Removing samtools (1.16.1-1) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u7) ... Removing libdata-dump-perl (1.25-1) ... Removing libdate-manip-perl (6.91-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libdav1d6:amd64 (1.0.0-2+deb12u1) ... Removing libdbd-mysql-perl:amd64 (4.050-5+b1) ... Removing libdbd-pg-perl (3.16.0-2) ... Removing libdbd-sqlite3-perl:amd64 (1.72-1) ... Removing libdbi-perl:amd64 (1.643-4) ... Removing libde265-0:amd64 (1.0.11-1+deb12u2) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libdevel-stacktrace-perl (2.0400-2) ... Removing libdevel-symdump-perl (2.18-5) ... Removing libdigest-perl-md5-perl (1.9-5) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing libdynaloader-functions-perl (0.003-3) ... Removing libtext-csv-xs-perl:amd64 (1.49-1) ... Removing libencode-perl:amd64 (3.19-1+b1) ... Removing liberror-perl (0.17029-2) ... Removing libpmix2:amd64 (4.2.2-1+deb12u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Removing ncbi-blast+-legacy (2.12.0+ds-3) ... Removing ncbi-blast+ (2.12.0+ds-3+b1) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libtype-tiny-perl (2.002001-1) ... Removing libsvg-graph-perl (0.02-4) ... Removing libstatistics-descriptive-perl (3.0800-1) ... Removing liblist-moreutils-perl (0.430-2) ... Removing libexporter-tiny-perl (1.006000-1) ... Removing libfcgi-bin (2.4.2-2) ... Removing libfcgi-perl (0.82+ds-2) ... Removing libfcgi0ldbl:amd64 (2.4.2-2) ... Removing pftools (3.2.12-1) ... Removing libfile-slurp-perl (9999.32-2) ... Removing libtree-dagnode-perl (1.32-1) ... Removing libfile-slurp-tiny-perl (0.004-2) ... Removing libfile-sort-perl (1.01-3) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing libfreezethaw-perl (0.5001-3) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing perl-doc (5.36.0-7+deb12u1) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing mafft (7.505-1) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libtest-deep-perl (1.204-1) ... Removing libmailtools-perl (2.21-2) ... Removing mailcap (3.70+nmu1) ... Removing libyaml-perl (1.30-2) ... Removing tm-align (20190822+dfsg-2) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing wise (2.4.1-23) ... Removing shared-mime-info (2.2-1) ... Removing libglib2.0-data (2.74.6-2+deb12u3) ... Removing muscle (1:5.1.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libgpm2:amd64 (1.20.7-10+b1) ... Removing libgraph-perl (1:0.9726-1) ... Removing libgs-common (10.0.0~dfsg-11+deb12u4) ... Removing libpq5:amd64 (15.8-0+deb12u1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libgts-bin (0.7.6+darcs121130-5+b1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-5+b1) ... Removing libheap-perl (0.80-5) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Removing libhtml-form-perl (6.11-1) ... Removing libhtml-tableextract-perl (2.15-2) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing libhwloc-plugins:amd64 (2.9.0-1) ... Removing libhwloc15:amd64 (2.9.0-1) ... Removing librdmacm1:amd64 (44.0-2) ... Removing libibverbs1:amd64 (44.0-2) ... Removing libxaw7:amd64 (2:1.0.14-1) ... Removing libxmu6:amd64 (2:1.1.3-3) ... Removing libxt6:amd64 (1:1.2.1-1.1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libxml-libxslt-perl:amd64 (2.002001-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libidn12:amd64 (1.41-1) ... Removing libijs-0.35:amd64 (0.35-15) ... Removing libipc-run-perl (20220807.0-1) ... Removing libio-pty-perl (1:1.17-1) ... Removing libio-sessiondata-perl (1.03-3) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libole-storage-lite-perl (0.20-2) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-sharelite-perl (0.17-5) ... Removing libjansson4:amd64 (2.14-2) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjbig2dec0:amd64 (0.19-3) ... Removing libjcode-pm-perl (2.06-1.1) ... Removing libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblab-gamut1:amd64 (2.42.2-7+deb12u1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libldap-common (2.5.13+dfsg-5) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing liblist-moreutils-xs-perl (0.430-3+b1) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libltdl7:amd64 (2.4.7-7~deb12u1) ... Removing liblua5.3-0:amd64 (5.3.6-2) ... Removing libmagic1:amd64 (1:5.44-3) ... Removing libmagic-mgc (1:5.44-3) ... Removing libmariadb3:amd64 (1:10.11.6-0+deb12u1) ... Removing libmath-spline-perl (0.02-4) ... Removing libmath-derivative-perl (1.01-3) ... Removing libmbedtls14:amd64 (2.28.3-1) ... Removing libmbedx509-1:amd64 (2.28.3-1) ... Removing libmbedcrypto7:amd64 (2.28.3-1) ... Removing libmldbm-perl (2.05-4) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libmunge2 (0.5.15-2) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libx265-199:amd64 (3.5-2+b1) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libpackage-stash-xs-perl:amd64 (0.30-1+b1) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libspreadsheet-writeexcel-perl (2.40-4) ... Removing libparse-recdescent-perl (1.967015+dfsg-4) ... Removing libpathplan4:amd64 (2.42.2-7+deb12u1) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libpcre3:amd64 (2:8.39-15) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpostscript-perl (0.06-3.1) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing librav1e0:amd64 (0.5.1-6) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libreadonly-perl (2.050-3) ... Removing libref-util-perl (0.204-2) ... Removing libref-util-xs-perl (0.117-2+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libset-object-perl (1.42-1+b2) ... Removing libset-scalar-perl (1.29-3) ... Removing libsigsegv2:amd64 (2.14-1) ... Removing libsort-naturally-perl (1.03-4) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libsub-exporter-progressive-perl (0.001013-3) ... Removing libsub-identify-perl (0.14-3) ... Removing libsub-name-perl:amd64 (0.26-2+b1) ... Removing libsub-quote-perl (2.006008-1) ... Removing libtest-warn-perl (0.37-2) ... Removing libtest-exception-perl (0.43-3) ... Removing libsub-uplevel-perl (0.2800-3) ... Removing libsvg-perl (2.87-1) ... Removing libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Removing libtask-weaken-perl (1.06-2) ... Removing libtest-requiresinternet-perl (0.05-4) ... Removing libtext-csv-perl (2.02-2) ... Removing libtext-iconv-perl:amd64 (1.7-8) ... Removing libthai-data (0.1.29-1) ... Removing libtie-ixhash-perl (1.23-4) ... Removing libtype-tiny-xs-perl:amd64 (0.025-1) ... Removing libunicode-map-perl (0.112-13+b1) ... Removing libvariable-magic-perl (0.63-1+b1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxml-sax-writer-perl (0.57-2) ... Removing libxml-filter-buffertext-perl (1.01-7) ... Removing libxml-simple-perl (2.25-2) ... Removing libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-2) ... Removing libxml-perl (0.08-4) ... Removing libxml-regexp-perl (0.04-1.1) ... Removing libxml-sax-base-perl (1.09-3) ... Removing libxml-writer-perl (0.900-2) ... Removing libxml-xpathengine-perl (0.14-2) ... Removing libxmuu1:amd64 (2:1.1.3-3) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxstring-perl:amd64 (0.005-2+b1) ... Removing libyaml-libyaml-perl (0.86+ds-1) ... Removing lynx-common (2.9.0dev.12-1) ... Removing maq (0.7.1-9) ... Removing mariadb-common (1:10.11.6-0+deb12u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing media-types (10.0.0) ... Removing menu (2.1.49) ... Removing mustang (3.2.4-1) ... Removing mysql-common (5.8+1.1.0) ... Removing ncbi-data (6.1.20170106+dfsg1-10) ... Removing ncoils (2002-9) ... Removing ocl-icd-libopencl1:amd64 (2.3.1-1) ... Removing openmpi-common (4.1.4-3) ... Removing pal2nal (14.1-3) ... Removing paml (4.9j+dfsg-4) ... Removing phylip (1:3.697+dfsg-2) ... Removing poa (2.0+20060928-8) ... Removing poppler-data (0.4.12-1) ... Removing prank (0.0.170427+dfsg-3) ... Removing primer3 (2.6.1-4) ... Removing probalign (1.4-10) ... Removing probcons (1.12-14) ... Removing proda (1.0-13) ... Removing publicsuffix (20230209.2326-1) ... Removing raxml (8.2.12+dfsg-8+b2) ... Removing readline-common (8.2-1.3) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.17+nmu1) ... Removing sim4 (0.0.20121010-8) ... Removing t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Removing tigr-glimmer (3.02b-6+b1) ... Removing unzip (6.0-28) ... Removing wise-data (2.4.1-23) ... Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.4.1-0.2) ... Removing zip (3.0-13) ... Removing openjdk-17-jre-headless:amd64 (17.0.12+7-2~deb12u1) ... Removing ca-certificates-java (20230710~deb12u1) ... Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing fonts-urw-base35 (20200910-7) ... Removing java-common (0.74) ... Removing libasound2:amd64 (1.2.8-1+b1) ... Removing libasound2-data (1.2.8-1) ... Removing libcups2:amd64 (2.4.2-3+deb12u7) ... Removing libavahi-client3:amd64 (0.8-10) ... Removing libavahi-common3:amd64 (0.8-10) ... Removing libavahi-common-data:amd64 (0.8-10) ... Removing libbio-perl-perl (1.7.8-1) ... Removing xfonts-utils (1:7.7+6) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libxml-parser-perl (2.46-4) ... Removing libdata-stag-perl (0.14-3) ... Removing libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libio-string-perl (1.08-4) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing libnss3:amd64 (2:3.87.1-1) ... Removing libnspr4:amd64 (2:4.35-1) ... Removing libpcsclite1:amd64 (1.9.9-2) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libwww-perl (6.68-1) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing ruby-sdbm:amd64 (1.0.0-5+b1) ... Removing libfile-listing-perl (6.15-1) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.81-1) ... Removing libhtml-tagset-perl (3.20-6) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libio-socket-ssl-perl (2.081-2) ... Removing libnet-http-perl (6.22-1) ... Removing libnet-ssleay-perl:amd64 (1.92-2+b1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing perl-openssl-defaults:amd64 (7+b1) ... Removing libtry-tiny-perl (0.31-2) ... Removing netbase (6.4) ... Removing libruby3.1:amd64 (3.1.2-7+deb12u1) ... Removing rake (13.0.6-3) ... Removing ruby (1:3.1) ... Removing ruby-rubygems (3.3.15-2) ... Removing libhttp-message-perl (6.44-1) ... Removing libclone-perl:amd64 (0.46-1) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libencode-locale-perl (1.05-3) ... Removing libhttp-date-perl (6.05-2) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libncurses6:amd64 (6.4-4) ... Removing liburi-perl (5.17-1) ... Removing libregexp-ipv6-perl (0.03-3) ... Removing libruby:amd64 (1:3.1) ... Removing libtimedate-perl (2.3300-2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-xmlrpc (0.3.2-2) ... Removing ruby-webrick (1.8.1-1) ... Removing ruby3.1 (3.1.2-7+deb12u1) ... Removing rubygems-integration (1.18) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libbsd0:amd64 (0.11.7-2) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing openssl (3.0.14-1~deb12u1) ... Removing libssl3:amd64 (3.0.14-1~deb12u1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 1m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstatistics-descriptive-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip', 'libbio-db-swissprot-perl'] 1m37.6s INFO: Running scripts post_remove 1m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_remove_exceptions'] 1m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_remove_exceptions'] 1m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstatistics-descriptive-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip'] 1m38.7s DUMP: dpkg: warning: ignoring request to remove alsa-topology-conf which isn't installed dpkg: warning: ignoring request to remove alsa-ucm-conf which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed (Reading database ... 6311 files and directories currently installed.) Purging configuration files for blends-common (0.7.5) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20230710~deb12u1) ... dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-7) ... Purging configuration files for dbus (1.14.10-1~deb12u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory rmdir: failed to remove '/var/lib/dbus': Directory not empty dpkg: warning: while removing dbus, directory '/var/lib/dbus' not empty so not removed dpkg: warning: ignoring request to remove dbus-bin which isn't installed Purging configuration files for dbus-daemon (1.14.10-1~deb12u1) ... dpkg: warning: ignoring request to remove dbus-session-bus-common which isn't installed dpkg: warning: ignoring request to remove dbus-system-bus-common which isn't installed dpkg: warning: ignoring request to remove default-jdk-headless which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.14.1-4) ... Purging configuration files for fontconfig-config (2.14.1-4) ... Purging configuration files for fonts-dejavu-core (2.37-6) ... Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation2 which isn't installed Purging configuration files for fonts-noto-mono (20201225-1) ... Purging configuration files for fonts-urw-base35 (20200910-7) ... dpkg: warning: ignoring request to remove fsa which isn't installed Purging configuration files for gawk (1:5.2.1-2) ... dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.42.2-7+deb12u1) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for hyphy-common (2.5.47+dfsg-1) ... Purging configuration files for hyphy-pt (2.5.47+dfsg-1) ... Purging configuration files for ibverbs-providers:amd64 (44.0-2) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for java-common (0.74) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove lagan which isn't installed dpkg: warning: ignoring request to remove libabsl20220623 which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.12-1+b2) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libavif15 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-cluster-perl which isn't installed dpkg: warning: ignoring request to remove libbio-eutilities-perl which isn't installed dpkg: warning: ignoring request to remove libbio-featureio-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-alignment-clustalw-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-remoteblast-perl which isn't installed dpkg: warning: ignoring request to remove libbio-variation-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcbor0.8 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d6 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libencode-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-bin which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi0ldbl which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-sort-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs-common which isn't installed dpkg: warning: ignoring request to remove libgs10 which isn't installed dpkg: warning: ignoring request to remove libgs10-common which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed Purging configuration files for libgvc6 (2.42.2-7+deb12u1) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libidn12 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed Purging configuration files for libldap-common (2.5.13+dfsg-5) ... dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-xs-perl which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.44-3) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.29) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre3 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.2) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librav1e0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libreadonly-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-xs-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-ipv6-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libruby which isn't installed dpkg: warning: ignoring request to remove libruby3.1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.28+dfsg-10) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libset-object-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-quote-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc1 which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-requiresinternet-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx265-199 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-3) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxstring-perl which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed Purging configuration files for lynx (2.9.0dev.12-1) ... Purging configuration files for lynx-common (2.9.0dev.12-1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.11.6-0+deb12u1) ... Purging configuration files for med-config (3.8.1) ... Purging configuration files for media-types (10.0.0) ... Purging configuration files for menu (2.1.49) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.1.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-10) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove openjdk-17-jdk-headless which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.12+7-2~deb12u1) ... Purging configuration files for openmpi-bin (4.1.4-3+b1) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.2p1-2+deb12u3) ... Purging configuration files for openssl (3.0.14-1~deb12u1) ... dpkg: warning: ignoring request to remove pal2nal which isn't installed dpkg: warning: ignoring request to remove paml which isn't installed Purging configuration files for perl (5.36.0-7+deb12u1) ... Purging configuration files for perl-doc (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove pftools which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.12-1) ... dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.6.1-4) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-sdbm which isn't installed dpkg: warning: ignoring request to remove ruby-webrick which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby3.1 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.2-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation2', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'krb5-locales', 'lagan', 'libabsl20220623:amd64', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-munkres-perl', 'libann0', 'libaom3:amd64', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif15:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0.8:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl:amd64', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdav1d6:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libencode-perl:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs-common', 'libgs10:amd64', 'libgs10-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu72:amd64', 'libidn12:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpfr6:amd64', 'libmunge2', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl:amd64', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre3:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'librav1e0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'libregexp-ipv6-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby:amd64', 'libruby3.1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstatistics-descriptive-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl:amd64', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libsvtav1enc1:amd64', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl:amd64', 'libtext-diff-perl', 'libtext-iconv-perl:amd64', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff6:amd64', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl:amd64', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp7:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl:amd64', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxstring-perl:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'libyuv0:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-17-jdk-headless:amd64', 'openjdk-17-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xz-utils', 'zip'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--purge', 'libbio-db-swissprot-perl'] 1m38.7s DUMP: dpkg: warning: ignoring request to remove libbio-db-swissprot-perl which isn't installed 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--purge', 'libbio-db-swissprot-perl'] 1m38.7s INFO: Running scripts post_purge 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_purge_exceptions'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_purge_exceptions'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--purge', '--pending'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--purge', '--pending'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--remove', '--pending'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg', '--remove', '--pending'] 1m38.7s INFO: Running scripts post_test 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_test_exceptions'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'tmp/scripts/post_test_exceptions'] 1m38.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 1m39.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 1m39.7s DEBUG: No broken symlinks as far as we can find. 1m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-divert', '--list'] 1m39.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'dpkg-divert', '--list'] 1m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'clean'] 1m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg', 'apt-get', 'clean'] 1m39.8s DEBUG: Recording chroot state 1m40.4s INFO: PASS: Installation and purging test. 1m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/shm'] 1m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/shm'] 1m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/console'] 1m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/console'] 1m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/ptmx'] 1m40.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/ptmx'] 1m40.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/pts'] 1m40.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/dev/pts'] 1m40.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/proc'] 1m40.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg/proc'] 1m40.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 1m41.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppyxk_nsg'] 1m41.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppyxk_nsg 1m41.0s INFO: PASS: All tests. 1m41.0s INFO: piuparts run ends. ret=0 End: 2024-09-18 05:38:41 GMT