Start: 2024-07-15 18:51:06 GMT Package: python3-nanostat Source: nanostat Version: 1.4.0-3 Installed-Size: 41 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-nanoget, python3-nanomath, python3:any Description: statistics on long biological sequences Homepage: https://github.com/wdecoster/nanostat Description-md5: 8824ff3e614043946bb67cb41555046f Section: science Priority: optional Filename: pool/main/n/nanostat/python3-nanostat_1.4.0-3_all.deb Size: 8576 MD5sum: f8ecec1d67d4e41ff5a27447edb8ddda SHA256: d0f8dd36c41ba4c544ea10787751fe4c6bd703da5c0ebbb9b039e6a1ea77fdf3 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt python3-nanostat=1.4.0-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt python3-nanostat=1.4.0-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-30-amd64 #1 SMP Debian 5.10.218-1 (2024-06-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvbt5eskk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvbt5eskk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvbt5eskk/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8788 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 2s (6397 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', '-yf', 'dist-upgrade'] 0m7.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files bash bsdutils libblkid1 libc-bin libc6 libgnutls30 libmount1 libseccomp2 libsmartcols1 libsystemd0 libudev1 libuuid1 mount util-linux util-linux-extra 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8781 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u6 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b7 [1490 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+deb12u1 [94.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u7 [2758 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+deb12u1 [107 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+deb12u1 [110 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+deb12u1 [1176 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u7 [607 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+deb12u1 [134 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+deb12u1 [147 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u3 [1405 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+deb12u1 [165 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+deb12u1 [46.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.26-1~deb12u2 [332 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.26-1~deb12u2 [108 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+deb12u1 [28.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8781 kB in 0s (85.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u6_amd64.deb ... Unpacking base-files (12.4+deb12u6) over (12.4+deb12u5) ... Setting up base-files (12.4+deb12u6) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2+b7_amd64.deb ... Unpacking bash (5.2.15-2+b7) over (5.2.15-2+b2) ... Setting up bash (5.2.15-2+b7) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5+deb12u1_amd64.deb ... Unpacking bsdutils (1:2.38.1-5+deb12u1) over (1:2.38.1-5+b1) ... Setting up bsdutils (1:2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6097 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u7_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u7) over (2.36-9+deb12u4) ... Setting up libc6:amd64 (2.36-9+deb12u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6097 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-5+deb12u1_amd64.deb ... Unpacking util-linux-extra (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up util-linux-extra (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6095 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-5+deb12u1_amd64.deb ... Unpacking util-linux (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up util-linux (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6094 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u7_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u7) over (2.36-9+deb12u4) ... Setting up libc-bin (2.36-9+deb12u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6094 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-5+deb12u1_amd64.deb ... Unpacking mount (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Preparing to unpack .../libblkid1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6092 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u3_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u3) over (3.7.9-2+deb12u2) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6092 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6091 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1+deb12u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-1+deb12u1) over (2.5.4-1+b3) ... Setting up libseccomp2:amd64 (2.5.4-1+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6090 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.26-1~deb12u2_amd64.deb ... Unpacking libsystemd0:amd64 (252.26-1~deb12u2) over (252.22-1~deb12u1) ... Setting up libsystemd0:amd64 (252.26-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6090 files and directories currently installed.) Preparing to unpack .../libudev1_252.26-1~deb12u2_amd64.deb ... Unpacking libudev1:amd64 (252.26-1~deb12u2) over (252.22-1~deb12u1) ... Setting up libudev1:amd64 (252.26-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6090 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libuuid1:amd64 (2.38.1-5+deb12u1) ... Setting up mount (2.38.1-5+deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for debianutils (5.7-0.5~deb12u1) ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', '-yf', 'dist-upgrade'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s INFO: Running scripts post_setup 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_dummy_users'] 0m8.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_dummy_users'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_forbid_home'] 0m9.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_forbid_home'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_minimize'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_minimize'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_zz_backports'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_setup_zz_backports'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'clean'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'clean'] 0m9.1s DEBUG: Recording chroot state 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.5s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-divert', '--list'] 0m9.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-divert', '--list'] 0m9.5s INFO: Running scripts is_testable 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s INFO: apt-cache does not know about any of the requested packages 0m9.5s INFO: Running scripts pre_test 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_test_root_password'] 0m9.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_test_root_password'] 0m9.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.3s INFO: Running scripts pre_install 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 0m11.3s DEBUG: No broken symlinks as far as we can find. 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-cache', 'policy'] 0m12.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-cache', 'policy'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-cache', 'policy', 'python3-nanostat'] 0m12.1s DUMP: python3-nanostat: Installed: (none) Candidate: 1.4.0-3 Version table: 1.4.0-3 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-cache', 'policy', 'python3-nanostat'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', '-y', 'install', 'python3-nanostat=1.4.0-3'] 2m55.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-12 dirmngr dpkg-dev fakeroot file fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm icu-devtools isympy-common isympy3 javascript-common krb5-locales libabsl20220623 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libaom3 libasan8 libassuan0 libatomic1 libavif15 libbinutils libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libclang-cpp14 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl3-nss libcurl4 libdav1d6 libde265-0 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgcc-12-dev libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libheif1 libhts3 libhtscodecs2 libicu-dev libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm14 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnpth0 libnsl-dev libnsl2 libnspr4 libnss3 libnuma1 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpcre3 libperl5.36 libpfm4 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsvtav1enc1 libsz2 libtcl8.6 libtiff6 libtinfo-dev libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxpm4 libxrender1 libxsimd-dev libxslt1.1 libxss1 libyaml-0-2 libyuv0 libz3-4 libz3-dev linux-libc-dev llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools mailcap make manpages manpages-dev media-types mime-support ncbi-blast+ ncbi-data netbase nss-plugin-pem numba-doc openssl patch perl perl-modules-5.36 pinentry-curses publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-beniget python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-deprecated python3-dev python3-distutils python3-et-xmlfile python3-fonttools python3-fs python3-gast python3-html5lib python3-iniconfig python3-jdcal python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nanoget python3-nanomath python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-pluggy python3-ply python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tz python3-ufolib2 python3-webencodings python3-wheel python3-wrapt python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev Suggested packages: binutils-doc blt-demo bzip2-doc cpp-doc gcc-12-locales cpp-12-doc dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib parcimonie xloadimage scdaemon apache2 | lighttpd | httpd libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc sensible-utils git bzr libgd-tools gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user icu-doc libjs-jquery-ui-docs liblcms2-utils ncurses-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-12-doc tcl8.6 tk8.6 pkg-config libxsimd-doc llvm-14-doc make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl pinentry-doc python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-bottleneck-doc python-cycler-doc python3-genshi python-jinja2-doc llvmlite-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 nvidia-cuda-toolkit gfortran python-pandas-doc python3-statsmodels python-pil-doc python-ply-doc subversion python-pygments-doc ttf-bitstream-vera python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3.11-venv python3.11-doc readline-doc sgml-base-doc debhelper Recommended packages: python3-biopython The following NEW packages will be installed: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-12 dirmngr dpkg-dev fakeroot file fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm icu-devtools isympy-common isympy3 javascript-common krb5-locales libabsl20220623 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libaom3 libasan8 libassuan0 libatomic1 libavif15 libbinutils libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libclang-cpp14 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl3-nss libcurl4 libdav1d6 libde265-0 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgcc-12-dev libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libheif1 libhts3 libhtscodecs2 libicu-dev libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm14 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnpth0 libnsl-dev libnsl2 libnspr4 libnss3 libnuma1 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpcre3 libperl5.36 libpfm4 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsvtav1enc1 libsz2 libtcl8.6 libtiff6 libtinfo-dev libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxpm4 libxrender1 libxsimd-dev libxslt1.1 libxss1 libyaml-0-2 libyuv0 libz3-4 libz3-dev linux-libc-dev llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools mailcap make manpages manpages-dev media-types mime-support ncbi-blast+ ncbi-data netbase nss-plugin-pem numba-doc openssl patch perl perl-modules-5.36 pinentry-curses publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-beniget python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-deprecated python3-dev python3-distutils python3-et-xmlfile python3-fonttools python3-fs python3-gast python3-html5lib python3-iniconfig python3-jdcal python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nanoget python3-nanomath python3-nanostat python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-pluggy python3-ply python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tz python3-ufolib2 python3-webencodings python3-wheel python3-wrapt python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev 0 upgraded, 334 newly installed, 0 to remove and 0 not upgraded. Need to get 390 MB of archives. After this operation, 1925 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 binfmt-support amd64 2.2.2-2 [64.0 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:33 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.13-1~deb12u1 [1418 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 krb5-locales all 1.20.1-2+deb12u1 [62.7 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 manpages all 6.03-2 [1332 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 xz-utils amd64 5.4.1-0.2 [471 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u3 [398 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:63 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u7 [45.8 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.94-1 [1994 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u7 [1899 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:90 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:94 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:101 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:102 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:104 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:105 http://deb.debian.org/debian bookworm/main amd64 make amd64 4.3-4.1 [396 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libdpkg-perl all 1.21.22 [603 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 patch amd64 2.7.6-7 [128 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 dpkg-dev all 1.21.22 [1353 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 build-essential amd64 12.9 [7704 B] Get:110 http://deb.debian.org/debian bookworm/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 gpgconf amd64 2.2.40-1.1 [564 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libksba8 amd64 1.6.3-2 [128 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libnpth0 amd64 1.6-3 [19.0 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 dirmngr amd64 2.2.40-1.1 [792 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libfakeroot amd64 1.31-1.2 [28.3 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 fakeroot amd64 1.31-1.2 [66.9 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 gnupg-l10n all 2.2.40-1.1 [1093 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 gnupg-utils amd64 2.2.40-1.1 [927 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 gpg amd64 2.2.40-1.1 [949 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 pinentry-curses amd64 1.2.1-1 [77.4 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 gpg-agent amd64 2.2.40-1.1 [695 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 gpg-wks-client amd64 2.2.40-1.1 [541 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 gpg-wks-server amd64 2.2.40-1.1 [531 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 gpgsm amd64 2.2.40-1.1 [671 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 gnupg all 2.2.40-1.1 [846 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 isympy-common all 1.11.1-1 [233 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 isympy3 all 1.11.1-1 [5524 B] Get:137 http://deb.debian.org/debian bookworm/main amd64 javascript-common all 11+nmu1 [6260 B] Get:138 http://deb.debian.org/debian bookworm/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-diff-xs-perl amd64 0.04-8+b1 [11.4 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libalgorithm-merge-perl all 0.08-5 [11.8 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libaom3 amd64 3.6.0-1 [1851 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libdav1d6 amd64 1.0.0-2+deb12u1 [513 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libyuv0 amd64 0.0~git20230123.b2528b0-1 [168 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libsnappy1v5 amd64 1.1.9-3 [26.0 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libblosc1 amd64 1.21.3+ds-1 [49.3 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:156 http://deb.debian.org/debian bookworm/main amd64 libde265-0 amd64 1.0.11-1+deb12u2 [185 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libheif1 amd64 1.15.1-1 [215 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb12u1 [48.6 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libgd3 amd64 2.3.3-9 [124 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libc-devtools amd64 2.36-9+deb12u7 [53.4 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp14 amd64 1:14.0.6-12 [11.1 MB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u6 [385 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 nss-plugin-pem amd64 1.0.8+1-1 [54.6 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 libcurl3-nss amd64 7.88.1-10+deb12u6 [394 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u6 [390 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libffi-dev amd64 3.4.4-1 [59.4 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libfile-fcntllock-perl amd64 0.22-4+b1 [34.8 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u3 [1400 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2+deb12u3 [1209 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 libgpm2 amd64 1.20.7-10+b1 [14.2 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:194 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get:198 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 libldap-common all 2.5.13+dfsg-5 [29.3 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 libncurses-dev amd64 6.4-4 [349 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 libpfm4 amd64 4.13.0-1 [294 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u2 [1987 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u2 [4742 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:225 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:226 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules amd64 2.1.28+dfsg-10 [66.6 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 libtinfo-dev amd64 6.4-4 [924 B] Get:230 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.3~deb12u1 [782 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 libz3-dev amd64 4.8.12-3.1 [90.6 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 llvm-14-runtime amd64 1:14.0.6-12 [477 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 llvm-14-linker-tools amd64 1:14.0.6-12 [1288 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 llvm-14 amd64 1:14.0.6-12 [11.7 MB] Get:240 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 llvm-14-tools amd64 1:14.0.6-12 [405 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 llvm-14-dev amd64 1:14.0.6-12 [33.9 MB] Get:245 http://deb.debian.org/debian bookworm/main amd64 manpages-dev all 6.03-2 [2030 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] Get:248 http://deb.debian.org/debian bookworm/main amd64 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 numba-doc all 0.56.4+dfsg-2 [970 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 publicsuffix all 20230209.2326-1 [126 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 python-biopython-doc all 1.80+dfsg-4 [16.1 MB] Get:253 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 python-odf-doc all 1.4.2-2 [213 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 python3-odf all 1.4.2-2 [78.0 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 python-odf-tools all 1.4.2-2 [28.1 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 python-tables-data all 3.7.0-5 [47.2 kB] Get:259 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:262 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u2 [615 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:265 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:270 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:271 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+deb12u1 [74.2 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 python3-bottleneck amd64 1.3.5+ds1-2+b1 [86.8 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 python3-soupsieve all 2.3.2-1 [38.8 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 python3-bs4 all 4.11.2-2 [121 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:288 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 python3-deprecated all 1.2.13-3 [14.1 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:294 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:297 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 python3-webencodings all 0.5.1-5 [11.1 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 python3-html5lib all 1.1-3 [93.0 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:306 http://deb.debian.org/debian bookworm/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get:307 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 python3-llvmlite amd64 0.39.1-2 [139 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-3+b1 [1681 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 python3-nanomath all 1.2.1+ds-1 [8120 B] Get:319 http://deb.debian.org/debian bookworm/main amd64 python3-nanoget all 1.16.1-2 [11.4 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 python3-nanostat all 1.4.0-3 [8576 B] Get:321 http://deb.debian.org/debian bookworm/main amd64 python3-numba amd64 0.56.4+dfsg-2 [1695 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 python3-numexpr amd64 2.8.4-1+b2 [92.2 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:324 http://deb.debian.org/debian bookworm/main amd64 python3-openpyxl all 3.0.9-1 [161 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 python3-pip all 23.0.1+dfsg-1 [1325 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get:329 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 python3-tables-lib amd64 3.7.0-5+b1 [378 kB] Get:332 http://deb.debian.org/debian bookworm/main amd64 python3-tables all 3.7.0-5 [339 kB] Get:333 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:334 http://deb.debian.org/debian bookworm/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 390 MB in 9s (42.0 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking xdg-user-dirs (0.18-1) ... Setting up libhtscodecs2:amd64 (1.3.0-4) ... Setting up libksba8:amd64 (1.6.3-2) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up javascript-common (11+nmu1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libaom3:amd64 (3.6.0-1) ... Setting up libabsl20220623:amd64 (20220623.1-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-10+b1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up xdg-user-dirs (0.18-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... No schema files found: doing nothing. Setting up manpages (6.03-2) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.1.94-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up krb5-locales (1.20.1-2+deb12u1) ... Setting up file (1:5.44-3) ... Setting up libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Setting up libassuan0:amd64 (2.5.5-5) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up bzip2 (1.0.8-5+b1) ... Setting up libffi-dev:amd64 (3.4.4-1) ... Setting up libldap-common (2.5.13+dfsg-5) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up librav1e0:amd64 (0.5.1-6) ... Setting up libaec0:amd64 (1.0.6-1+b1) ... Setting up libfakeroot:amd64 (1.31-1.2) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libsnappy1v5:amd64 (1.1.9-3) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libpcre3:amd64 (2:8.39-15) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libglib2.0-data (2.74.6-2+deb12u3) ... Setting up libpfm4:amd64 (4.13.0-1) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libmbedcrypto7:amd64 (2.28.3-1) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up make (4.3-4.1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up gnupg-l10n (2.2.40-1.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up xz-utils (5.4.1-0.2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up patch (2.7.6-7) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up binfmt-support (2.2.2-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libdav1d6:amd64 (1.0.0-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up python-biopython-doc (1.80+dfsg-4) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libblosc1:amd64 (1.21.3+ds-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1.1) ... Setting up libde265-0:amd64 (1.0.11-1+deb12u2) ... Setting up libc-dev-bin (2.36-9+deb12u7) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.13-1~deb12u1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Setting up readline-common (8.2-1.3) ... Setting up publicsuffix (20230209.2326-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up python-tables-data (3.7.0-5) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up pinentry-curses (1.2.1-1) ... Setting up libz3-dev:amd64 (4.8.12-3.1) ... Setting up manpages-dev (6.03-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libavif15:amd64 (0.11.1-1) ... Setting up libmbedx509-1:amd64 (2.28.3-1) ... Setting up libmbedtls14:amd64 (2.28.3-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up shared-mime-info (2.2-1) ... Setting up python-odf-doc (1.4.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up libllvm14:amd64 (1:14.0.6-12) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u6) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up numba-doc (0.56.4+dfsg-2) ... Setting up llvm-14-linker-tools (1:14.0.6-12) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up gpg (2.2.40-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up gnupg-utils (2.2.40-1.1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up gpg-agent (2.2.40-1.1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up gpgsm (2.2.40-1.1) ... Setting up libheif1:amd64 (1.15.1-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up nss-plugin-pem:amd64 (1.0.8+1-1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Setting up binutils (2.40-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up dirmngr (2.2.40-1.1) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up llvm-14-runtime (1:14.0.6-12) ... Setting up gcc-12 (12.2.0-14) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libgd3:amd64 (2.3.3-9) ... Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up libdpkg-perl (1.21.22) ... Setting up gpg-wks-server (2.2.40-1.1) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libcurl3-nss:amd64 (7.88.1-10+deb12u6) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libc-devtools (2.36-9+deb12u7) ... Setting up llvm-14 (1:14.0.6-12) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up mime-support (3.66) ... Setting up gpg-wks-client (2.2.40-1.1) ... Setting up libfile-fcntllock-perl (0.22-4+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up gcc (4:12.2.0-3) ... Setting up dpkg-dev (1.21.22) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up gnupg (2.2.40-1.1) ... Setting up libc6-dev:amd64 (2.36-9+deb12u7) ... Setting up libalgorithm-diff-xs-perl:amd64 (0.04-8+b1) ... Setting up libicu-dev:amd64 (72.1-3) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libalgorithm-merge-perl (0.08-5) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libncurses-dev:amd64 (6.4-4) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-webencodings (0.5.1-5) ... Setting up python3-tz (2022.7.1-4) ... Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-llvmlite (0.39.1-2) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up libxml2-dev:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-html5lib (1.1-3) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-soupsieve (2.3.2-1) ... Setting up python3-deprecated (1.2.13-3) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up libtinfo-dev:amd64 (6.4-4) ... Setting up python3-attr (22.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-olefile (0.46-3) ... Setting up python3-ply (3.11-5) ... Setting up isympy-common (1.11.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-bs4 (4.11.2-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Setting up python3-openpyxl (3.0.9-1) ... Setting up isympy3 (1.11.1-1) ... Setting up python3-pip (23.0.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.9) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-odf (1.4.2-2) ... Setting up llvm-14-tools (1:14.0.6-12) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6+deb12u2) ... Setting up python3-tables-lib (3.7.0-5+b1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python-odf-tools (1.4.2-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-bottleneck (1.3.5+ds1-2+b1) ... Setting up python3-numexpr (2.8.4-1+b2) ... Setting up python3-nanomath (1.2.1+ds-1) ... Setting up llvm-14-dev (1:14.0.6-12) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-tables (3.7.0-5) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-numba (0.56.4+dfsg-2) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up python3-nanoget (1.16.1-2) ... Setting up python3-nanostat (1.4.0-3) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', '-y', 'install', 'python3-nanostat=1.4.0-3'] 2m55.5s INFO: Running scripts post_install 2m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_install_exceptions'] 2m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_install_exceptions'] 2m55.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 2m57.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 3m3.0s DEBUG: No broken symlinks as far as we can find. 3m3.1s INFO: /bin converted to /usr/bin by /usr merge 3m3.1s INFO: /lib converted to /usr/lib by /usr merge 3m3.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 3m3.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 3m3.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 3m3.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 3m3.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 3m3.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 3m3.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 3m3.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 3m3.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 3m3.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 3m3.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 3m3.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 3m3.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 3m3.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 3m3.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 3m3.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 3m3.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 3m3.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 3m3.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 3m3.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 3m3.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 3m3.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 3m3.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m3.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 3m3.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 3m3.1s INFO: /sbin converted to /usr/sbin by /usr merge 3m6.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', '-ac', '--ignore-obsolete'] 3m14.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', '-ac', '--ignore-obsolete'] 3m14.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m14.3s DUMP: 0.15.6 3m14.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m14.3s INFO: Running adequate version 0.15.6 now. 3m14.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'python3-nanostat'] 3m14.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'python3-nanostat'] 3m14.4s INFO: Running scripts pre_remove 3m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_exceptions'] 3m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/pre_remove_exceptions'] 3m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m31.4s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed binfmt-support binfmt-support 2.2.2-2 install ok installed binutils binutils 2.40-2 install ok installed binutils-common:amd64 binutils-common 2.40-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.40-2 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed build-essential build-essential 12.9 install ok installed bzip2 bzip2 1.0.8-5+b1 install ok installed ca-certificates ca-certificates 20230311 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-3 install ok installed cpp-12 cpp-12 12.2.0-14 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dirmngr dirmngr 2.2.40-1.1 install ok installed dpkg dpkg 1.21.22 install ok installed dpkg-dev dpkg-dev 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed fakeroot fakeroot 1.31-1.2 install ok installed file file 1:5.44-3 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-6 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-lyx fonts-lyx 2.3.7-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed g++ g++ 4:12.2.0-3 install ok installed g++-12 g++-12 12.2.0-14 install ok installed gcc gcc 4:12.2.0-3 install ok installed gcc-12 gcc-12 12.2.0-14 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gnupg gnupg 2.2.40-1.1 install ok installed gnupg-l10n gnupg-l10n 2.2.40-1.1 install ok installed gnupg-utils gnupg-utils 2.2.40-1.1 install ok installed gpg gpg 2.2.40-1.1 install ok installed gpg-agent gpg-agent 2.2.40-1.1 install ok installed gpg-wks-client gpg-wks-client 2.2.40-1.1 install ok installed gpg-wks-server gpg-wks-server 2.2.40-1.1 install ok installed gpgconf gpgconf 2.2.40-1.1 install ok installed gpgsm gpgsm 2.2.40-1.1 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed icu-devtools icu-devtools 72.1-3 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed isympy-common isympy-common 1.11.1-1 install ok installed isympy3 isympy3 1.11.1-1 install ok installed javascript-common javascript-common 11+nmu1 install ok installed krb5-locales krb5-locales 1.20.1-2+deb12u1 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libaec0:amd64 libaec0 1.0.6-1+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl:amd64 libalgorithm-diff-xs-perl 0.04-8+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-5 install ok installed libaom3:amd64 libaom3 3.6.0-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libasan8:amd64 libasan8 12.2.0-14 install ok installed libassuan0:amd64 libassuan0 2.5.5-5 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libavif15:amd64 libavif15 0.11.1-1 install ok installed libbinutils:amd64 libbinutils 2.40-2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libblosc1:amd64 libblosc1 1.21.3+ds-1 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-21 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc-dev-bin libc-dev-bin 2.36-9+deb12u7 install ok installed libc-devtools libc-devtools 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libc6-dev:amd64 libc6-dev 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-14 install ok installed libclang-cpp14 libclang-cpp14 1:14.0.6-12 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.40-2 install ok installed libctf0:amd64 libctf0 2.40-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u6 install ok installed libcurl3-nss:amd64 libcurl3-nss 7.88.1-10+deb12u6 install ok installed libcurl4:amd64 libcurl4 7.88.1-10+deb12u6 install ok installed libdav1d6:amd64 libdav1d6 1.0.0-2+deb12u1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libde265-0:amd64 libde265-0 1.0.11-1+deb12u2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libdpkg-perl libdpkg-perl 1.21.22 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libfakeroot:amd64 libfakeroot 1.31-1.2 install ok installed libffi-dev:amd64 libffi-dev 3.4.4-1 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-4+b1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5+deb12u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-14 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgd3:amd64 libgd3 2.3.3-9 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u3 install ok installed libglib2.0-data libglib2.0-data 2.74.6-2+deb12u3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-10+b1 install ok installed libgprofng0:amd64 libgprofng0 2.40-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.8+repack1-1 install ok installed libheif1:amd64 libheif1 1.15.1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhts3:amd64 libhts3 1.16+ds-3 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.3.0-4 install ok installed libicu-dev:amd64 libicu-dev 72.1-3 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1.1 install ok installed libitm1:amd64 libitm1 12.2.0-14 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u1 install ok installed libksba8:amd64 libksba8 1.6.3-2 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed libldap-common libldap-common 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed libllvm14:amd64 libllvm14 1:14.0.6-12 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-5 install ok installed liblsan0:amd64 liblsan0 12.2.0-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-2 install ok installed libmagic-mgc libmagic-mgc 1:5.44-3 install ok installed libmagic1:amd64 libmagic1 1:5.44-3 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.3-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.3-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.3-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libncurses-dev:amd64 libncurses-dev 6.4-4 install ok installed libncurses6:amd64 libncurses6 6.4-4 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnpth0:amd64 libnpth0 1.6-3 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1 install ok installed libnss3:amd64 libnss3 2:3.87.1-1 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpfm4:amd64 libpfm4 4.13.0-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.7-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.2-1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11:amd64 libpython3.11 3.11.2-6+deb12u2 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.2-6+deb12u2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-5 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.7.0-4.1 install ok installed librav1e0:amd64 librav1e0 0.5.1-6 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.9-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.13-1~deb12u1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-14 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsvtav1enc1:amd64 libsvtav1enc1 1.4.1+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libsz2:amd64 libsz2 1.0.6-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.4-4 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libtsan2:amd64 libtsan2 12.2.0-14 install ok installed libubsan1:amd64 libubsan1 12.2.0-14 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.4-0.2+deb12u1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.4-0.2+deb12u1 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libx265-199:amd64 libx265-199 3.5-2+b1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxml2-dev:amd64 libxml2-dev 2.9.14+dfsg-1.3~deb12u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb12u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libyuv0:amd64 libyuv0 0.0~git20230123.b2528b0-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1 install ok installed libz3-dev:amd64 libz3-dev 4.8.12-3.1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.1.94-1 install ok installed llvm-14 llvm-14 1:14.0.6-12 install ok installed llvm-14-dev llvm-14-dev 1:14.0.6-12 install ok installed llvm-14-linker-tools llvm-14-linker-tools 1:14.0.6-12 install ok installed llvm-14-runtime llvm-14-runtime 1:14.0.6-12 install ok installed llvm-14-tools llvm-14-tools 1:14.0.6-12 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mailcap mailcap 3.70+nmu1 install ok installed make make 4.3-4.1 install ok installed manpages manpages 6.03-2 install ok installed manpages-dev manpages-dev 6.03-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-3+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed netbase netbase 6.4 install ok installed nss-plugin-pem:amd64 nss-plugin-pem 1.0.8+1-1 install ok installed numba-doc numba-doc 0.56.4+dfsg-2 install ok installed openssl openssl 3.0.13-1~deb12u1 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed patch patch 2.7.6-7 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed pinentry-curses pinentry-curses 1.2.1-1 install ok installed publicsuffix publicsuffix 20230209.2326-1 install ok installed python-babel-localedata python-babel-localedata 2.10.3-1 install ok installed python-biopython-doc python-biopython-doc 1.80+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python-odf-doc python-odf-doc 1.4.2-2 install ok installed python-odf-tools python-odf-tools 1.4.2-2 install ok installed python-tables-data python-tables-data 3.7.0-5 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-all python3-all 3.11.2-1+b1 install ok installed python3-all-dev python3-all-dev 3.11.2-1+b1 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-attr python3-attr 22.2.0-1 install ok installed python3-babel python3-babel 2.10.3-1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.80+dfsg-4+b1 install ok installed python3-bottleneck python3-bottleneck 1.3.5+ds1-2+b1 install ok installed python3-brotli python3-brotli 1.0.9-2+b6 install ok installed python3-bs4 python3-bs4 4.11.2-2 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b1 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-2 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-defusedxml python3-defusedxml 0.7.1-2 install ok installed python3-deprecated python3-deprecated 1.2.13-3 install ok installed python3-dev python3-dev 3.11.2-1+b1 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-fonttools python3-fonttools 4.38.0-1+b1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-html5lib python3-html5lib 1.1-3 install ok installed python3-iniconfig python3-iniconfig 1.1.1-2 install ok installed python3-jdcal python3-jdcal 1.0-1.3 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-llvmlite python3-llvmlite 0.39.1-2 install ok installed python3-lxml:amd64 python3-lxml 4.9.2-1+b1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b2 install ok installed python3-markupsafe python3-markupsafe 2.1.2-1+b1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-more-itertools python3-more-itertools 8.10.0-2 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-nanoget python3-nanoget 1.16.1-2 install ok installed python3-nanomath python3-nanomath 1.2.1+ds-1 install ok installed python3-nanostat python3-nanostat 1.4.0-3 install ok installed python3-numba python3-numba 0.56.4+dfsg-2 install ok installed python3-numexpr python3-numexpr 2.8.4-1+b2 install ok installed python3-numpy python3-numpy 1:1.24.2-1 install ok installed python3-odf python3-odf 1.4.2-2 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openpyxl python3-openpyxl 3.0.9-1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-2 install ok installed python3-pil:amd64 python3-pil 9.4.0-1.1+deb12u1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 9.4.0-1.1+deb12u1 install ok installed python3-pip python3-pip 23.0.1+dfsg-1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-pluggy python3-pluggy 1.0.0+repack-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-py python3-py 1.11.0-1 install ok installed python3-pygments python3-pygments 2.14.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pysam python3-pysam 0.20.0+ds-3+b1 install ok installed python3-pytest python3-pytest 7.2.1-2 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.12-1+b1 install ok installed python3-reportlab python3-reportlab 3.6.12-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.12-1+b1 install ok installed python3-scipy python3-scipy 1.10.1-2 install ok installed python3-setuptools python3-setuptools 66.1.1-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-soupsieve python3-soupsieve 2.3.2-1 install ok installed python3-sympy python3-sympy 1.11.1-1 install ok installed python3-tables python3-tables 3.7.0-5 install ok installed python3-tables-lib python3-tables-lib 3.7.0-5+b1 install ok installed python3-tk:amd64 python3-tk 3.11.2-3 install ok installed python3-tz python3-tz 2022.7.1-4 install ok installed python3-ufolib2 python3-ufolib2 0.14.0+dfsg1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-5 install ok installed python3-wheel python3-wheel 0.38.4-2 install ok installed python3-wrapt python3-wrapt 1.14.1-2+b2 install ok installed python3-yaml python3-yaml 6.0-3+b2 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-dev python3.11-dev 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed readline-common readline-common 8.2-1.3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sgml-base sgml-base 1.31 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 1.2.0+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed unicode-data unicode-data 15.0.0-1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xz-utils xz-utils 5.4.1-0.2 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 3m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'remove', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-12', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libaom3:amd64', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libavif15:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp14', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl3-nss:amd64', 'libcurl4:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsvtav1enc1:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtinfo-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'nss-plugin-pem:amd64', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.36', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-chardet', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nanoget', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64', 'python3-nanostat'] 4m33.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-12 dirmngr dpkg-dev fakeroot file fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm icu-devtools isympy-common isympy3 javascript-common krb5-locales libabsl20220623 libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libaom3 libasan8 libassuan0 libatomic1 libavif15 libbinutils libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libclang-cpp14 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl3-nss libcurl4 libdav1d6 libde265-0 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-fcntllock-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-1 libgcc-12-dev libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libheif1 libhts3 libhtscodecs2 libicu-dev libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 libldap-common liblerc4 libllvm14 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpc3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnghttp2-14 libnpth0 libnsl-dev libnsl2 libnspr4 libnss3 libnuma1 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpcre3 libperl5.36 libpfm4 libpipeline1 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsvtav1enc1 libsz2 libtcl8.6 libtiff6 libtinfo-dev libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx265-199 libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-dev libxpm4 libxrender1 libxsimd-dev libxslt1.1 libxss1 libyaml-0-2 libyuv0 libz3-4 libz3-dev linux-libc-dev llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools mailcap make manpages manpages-dev media-types mime-support ncbi-blast+ ncbi-data netbase nss-plugin-pem numba-doc openssl patch perl perl-modules-5.36 pinentry-curses publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-tables-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-beniget python3-biopython python3-bottleneck python3-brotli python3-bs4 python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-deprecated python3-dev python3-distutils python3-et-xmlfile python3-fonttools python3-fs python3-gast python3-html5lib python3-iniconfig python3-jdcal python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nanoget python3-nanomath python3-nanostat python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pip python3-pkg-resources python3-pluggy python3-ply python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-soupsieve python3-sympy python3-tables python3-tables-lib python3-tk python3-tz python3-ufolib2 python3-webencodings python3-wheel python3-wrapt python3-yaml python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xdg-user-dirs xfonts-encodings xfonts-utils xml-core xz-utils zlib1g-dev 0 upgraded, 0 newly installed, 334 to remove and 0 not upgraded. After this operation, 1925 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 57510 files and directories currently installed.) Removing binfmt-support (2.2.2-2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3-numba (0.56.4+dfsg-2) ... Removing build-essential (12.9) ... Removing g++ (4:12.2.0-3) ... Removing gcc (4:12.2.0-3) ... Removing dpkg-dev (1.21.22) ... Removing python3-nanostat (1.4.0-3) ... Removing python3-nanoget (1.16.1-2) ... Removing python3-biopython (1.80+dfsg-4+b1) ... Removing python3-reportlab (3.6.12-1) ... Removing python3-matplotlib (3.6.3-1+b1) ... Removing python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Removing python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Removing python3-tk:amd64 (3.11.2-3) ... Removing blt (2.5.3+dfsg-4.1) ... Removing bzip2 (1.0.8-5+b1) ... Removing python3-pip (23.0.1+dfsg-1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:12.2.0-3) ... Removing gnupg (2.2.40-1.1) ... Removing gpg-wks-client (2.2.40-1.1) ... Removing dirmngr (2.2.40-1.1) ... Removing fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing file (1:5.44-3) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libc-devtools (2.36-9+deb12u7) ... Removing libgd3:amd64 (2.3.3-9) ... Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-dejavu-core (2.37-6) ... Removing numba-doc (0.56.4+dfsg-2) ... Removing sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.0-2.1) ... Removing fonts-lyx (2.3.7-1) ... Removing python3-renderpm:amd64 (3.6.12-1+b1) ... Removing fonts-urw-base35 (20200910-7) ... Removing gnupg-l10n (2.2.40-1.1) ... Removing gnupg-utils (2.2.40-1.1) ... Removing gpg-wks-server (2.2.40-1.1) ... Removing gpg (2.2.40-1.1) ... Removing gpg-agent (2.2.40-1.1) ... Removing gpgsm (2.2.40-1.1) ... Removing gpgconf (2.2.40-1.1) ... Removing llvm-14-dev (1:14.0.6-12) ... Removing libxml2-dev:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu-dev:amd64 (72.1-3) ... Removing icu-devtools (72.1-3) ... Removing isympy3 (1.11.1-1) ... Removing isympy-common (1.11.1-1) ... Removing javascript-common (11+nmu1) ... Removing krb5-locales (1.20.1-2+deb12u1) ... Removing libavif15:amd64 (0.11.1-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-1) ... Removing python3-tables (3.7.0-5) ... Removing python3-tables-lib (3.7.0-5+b1) ... Removing libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Removing libsz2:amd64 (1.0.6-1+b1) ... Removing libaec0:amd64 (1.0.6-1+b1) ... Removing libalgorithm-merge-perl (0.08-5) ... Removing libalgorithm-diff-xs-perl:amd64 (0.04-8+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libheif1:amd64 (1.15.1-1) ... Removing libaom3:amd64 (3.6.0-1) ... Removing pinentry-curses (1.2.1-1) ... Removing libassuan0:amd64 (2.5.5-5) ... Removing python3-nanomath (1.2.1+ds-1) ... Removing python3-pandas (1.5.3+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Removing python3-numexpr (2.8.4-1+b2) ... Removing python3-bottleneck (1.3.5+ds1-2+b1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libblosc1:amd64 (1.21.3+ds-1) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.7.0-4.1) ... Removing libcurl4:amd64 (7.88.1-10+deb12u6) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing python3-llvmlite (0.39.1-2) ... Removing libtinfo-dev:amd64 (6.4-4) ... Removing libncurses-dev:amd64 (6.4-4) ... Removing libclang-cpp14 (1:14.0.6-12) ... Removing python3-pysam (0.20.0+ds-3+b1) ... Removing libhts3:amd64 (1.16+ds-3) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Removing llvm-14 (1:14.0.6-12) ... Removing libcurl3-nss:amd64 (7.88.1-10+deb12u6) ... Removing libdav1d6:amd64 (1.0.0-2+deb12u1) ... Removing libde265-0:amd64 (1.0.11-1+deb12u2) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libdpkg-perl (1.21.22) ... Removing llvm-14-tools (1:14.0.6-12) ... Removing python3-wheel (0.38.4-2) ... Removing python3-yaml (6.0-3+b2) ... Removing libfakeroot:amd64 (1.31-1.2) ... Removing libffi-dev:amd64 (3.4.4-1) ... Removing libfile-fcntllock-perl (0.22-4+b1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing ncbi-blast+ (2.12.0+ds-3+b1) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing shared-mime-info (2.2-1) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Removing libglib2.0-data (2.74.6-2+deb12u3) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgpm2:amd64 (1.20.7-10+b1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhtscodecs2:amd64 (1.3.0-4) ... Removing python3-openpyxl (3.0.9-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libyuv0:amd64 (0.0~git20230123.b2528b0-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing python-odf-doc (1.4.2-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libksba8:amd64 (1.6.3-2) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libldap-common (2.5.13+dfsg-5) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing liblocale-gettext-perl (1.07-5) ... Removing liblzo2-2:amd64 (2.10-2) ... Removing libmagic1:amd64 (1:5.44-3) ... Removing libmagic-mgc (1:5.44-3) ... Removing libmbedtls14:amd64 (2.28.3-1) ... Removing libmbedx509-1:amd64 (2.28.3-1) ... Removing libmbedcrypto7:amd64 (2.28.3-1) ... Removing libncurses6:amd64 (6.4-4) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libnpth0:amd64 (1.6-3) ... Removing nss-plugin-pem:amd64 (1.0.8+1-1) ... Removing libnss3:amd64 (2:3.87.1-1) ... Removing libnspr4:amd64 (2:4.35-1) ... Removing libx265-199:amd64 (3.5-2+b1) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libpcre3:amd64 (2:8.39-15) ... Removing libpfm4:amd64 (4.13.0-1) ... Removing libpipeline1:amd64 (1.5.7-1) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing libqhull-r8.0:amd64 (2020.2-5) ... Removing librav1e0:amd64 (0.5.1-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libsnappy1v5:amd64 (1.1.9-3) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing openssl (3.0.13-1~deb12u1) ... Removing libsvtav1enc1:amd64 (1.4.1+dfsg-1) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb12u1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing libz3-dev:amd64 (4.8.12-3.1) ... Removing llvm-14-runtime (1:14.0.6-12) ... Removing llvm-14-linker-tools (1:14.0.6-12) ... Removing make (4.3-4.1) ... Removing manpages-dev (6.03-2) ... Removing manpages (6.03-2) ... Removing ncbi-data (6.1.20170106+dfsg1-10) ... Removing netbase (6.4) ... Removing patch (2.7.6-7) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Removing publicsuffix (20230209.2326-1) ... Removing python3-babel (2.10.3-1) ... Removing python-babel-localedata (2.10.3-1) ... Removing python-biopython-doc (1.80+dfsg-4) ... Removing python-odf-tools (1.4.2-2) ... Removing python-tables-data (3.7.0-5) ... Removing python3-pytest (7.2.1-2) ... Removing python3-bs4 (4.11.2-2) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-contourpy (1.0.7-1+b1) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-2) ... Removing python3-odf (1.4.2-2) ... Removing python3-defusedxml (0.7.1-2) ... Removing python3-deprecated (1.2.13-3) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-html5lib (1.1-3) ... Removing python3-iniconfig (1.1.1-2) ... Removing python3-jdcal (1.0-1.3) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-kiwisolver (1.4.4-1+b1) ... Removing python3-markupsafe (2.1.2-1+b1) ... Removing python3-more-itertools (8.10.0-2) ... Removing python3-olefile (0.46-3) ... Removing python3-packaging (23.0-1) ... Removing python3-setuptools (66.1.1-1) ... Removing python3-py (1.11.0-1) ... Removing python3-pluggy (1.0.0+repack-1) ... Removing python3-pygments (2.14.0+dfsg-1) ... Removing python3-pyparsing (3.0.9-1) ... Removing python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Removing python3-wrapt (1.14.1-2+b2) ... Removing python3-soupsieve (2.3.2-1) ... Removing python3-webencodings (0.5.1-5) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.4.1-0.2) ... Removing libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libllvm14:amd64 (1:14.0.6-12) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libz3-4:amd64 (4.8.12-3.1) ... Removing python3-fonttools (4.38.0-1+b1) ... Removing python3-scipy (1.10.1-2) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++-12 (12.2.0-14) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Removing libstdc++-12-dev:amd64 (12.2.0-14) ... Removing python3-numpy (1:1.24.2-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing python3-all-dev (3.11.2-1+b1) ... Removing python3-dev (3.11.2-1+b1) ... Removing python3.11-dev (3.11.2-6+deb12u2) ... Removing libpython3-all-dev:amd64 (3.11.2-1+b1) ... Removing libpython3-dev:amd64 (3.11.2-1+b1) ... Removing libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-9+deb12u7) ... Removing libc-dev-bin (2.36-9+deb12u7) ... Removing libcrypt-dev:amd64 (1:4.4.33-2) ... Removing python3-all (3.11.2-1+b1) ... Removing python3-distutils (3.11.2-3) ... Removing python3-sympy (1.11.1-1) ... Removing libpython3.11:amd64 (3.11.2-6+deb12u2) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing python3-lxml:amd64 (4.9.2-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libjs-sphinxdoc (5.3.0-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing linux-libc-dev:amd64 (6.1.94-1) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-beniget (0.4.1-3) ... Removing python3-brotli (1.0.9-2+b6) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-lz4 (4.0.2+dfsg-1+b2) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-ply (3.11-5) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2022.7.1-4) ... Removing rpcsvc-proto (1.4.3-1) ... Removing unicode-data (15.0.0-1) ... Removing python3-ufolib2 (0.14.0+dfsg1-1) ... Removing gcc-12 (12.2.0-14) ... Removing binutils (2.40-2) ... Removing binutils-x86-64-linux-gnu (2.40-2) ... Removing libgprofng0:amd64 (2.40-2) ... Removing libctf0:amd64 (2.40-2) ... Removing libbinutils:amd64 (2.40-2) ... Removing binutils-common:amd64 (2.40-2) ... Removing cpp-12 (12.2.0-14) ... Removing libgcc-12-dev:amd64 (12.2.0-14) ... Removing libasan8:amd64 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libcc1-0:amd64 (12.2.0-14) ... Removing libctf-nobfd0:amd64 (2.40-2) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libisl23:amd64 (0.25-1.1) ... Removing libitm1:amd64 (12.2.0-14) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-14) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libquadmath0:amd64 (12.2.0-14) ... Removing libtsan2:amd64 (12.2.0-14) ... Removing libubsan1:amd64 (12.2.0-14) ... Removing python3-attr (22.2.0-1) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libssl3:amd64 (3.0.13-1~deb12u1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 4m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'remove', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-12', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libaom3:amd64', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libavif15:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp14', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl3-nss:amd64', 'libcurl4:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsvtav1enc1:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtinfo-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'nss-plugin-pem:amd64', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.36', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-chardet', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nanoget', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64', 'python3-nanostat'] 4m33.2s INFO: Running scripts post_remove 4m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_remove_exceptions'] 4m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_remove_exceptions'] 4m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--purge', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-12', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libaom3:amd64', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libavif15:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp14', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl3-nss:amd64', 'libcurl4:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsvtav1enc1:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtinfo-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'nss-plugin-pem:amd64', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.36', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-chardet', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nanoget', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64'] 4m34.5s DUMP: (Reading database ... 6187 files and directories currently installed.) Purging configuration files for binfmt-support (2.2.2-2) ... dpkg: warning: ignoring request to remove binutils which isn't installed Purging configuration files for binutils-common:amd64 (2.40-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed Purging configuration files for dirmngr (2.2.40-1.1) ... 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ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-nanoget which isn't installed dpkg: warning: ignoring request to remove python3-nanomath which isn't installed dpkg: warning: ignoring request to remove python3-numba which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-odf which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pip which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed Purging configuration files for python3-sympy (1.11.1-1) ... dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed Purging configuration files for sgml-base (1.31) ... Purging configuration files for shared-mime-info (2.2-1) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--purge', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-12', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'icu-devtools', 'isympy-common', 'isympy3', 'javascript-common', 'krb5-locales', 'libabsl20220623:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl:amd64', 'libalgorithm-merge-perl', 'libaom3:amd64', 'libasan8:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libavif15:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp14', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl3-nss:amd64', 'libcurl4:amd64', 'libdav1d6:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgcc-12-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu-dev:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'libldap-common', 'liblerc4:amd64', 'libllvm14:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsvtav1enc1:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtinfo-dev:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx265-199:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-dev:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-14', 'llvm-14-dev', 'llvm-14-linker-tools', 'llvm-14-runtime', 'llvm-14-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'nss-plugin-pem:amd64', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.36', 'pinentry-curses', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-bottleneck', 'python3-brotli', 'python3-bs4', 'python3-chardet', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-deprecated', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-fonttools', 'python3-fs', 'python3-gast', 'python3-html5lib', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-nanoget', 'python3-nanomath', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-sympy', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-webencodings', 'python3-wheel', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xdg-user-dirs', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xz-utils', 'zlib1g-dev:amd64'] 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--purge', 'python3-nanostat'] 4m34.5s DUMP: dpkg: warning: ignoring request to remove python3-nanostat which isn't installed 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--purge', 'python3-nanostat'] 4m34.5s INFO: Running scripts post_purge 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_purge_exceptions'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_purge_exceptions'] 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--purge', '--pending'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--purge', '--pending'] 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--remove', '--pending'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg', '--remove', '--pending'] 4m34.5s INFO: Running scripts post_test 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_test_exceptions'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'tmp/scripts/post_test_exceptions'] 4m34.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 4m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 4m35.5s DEBUG: No broken symlinks as far as we can find. 4m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-divert', '--list'] 4m35.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 4m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'dpkg-divert', '--list'] 4m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'clean'] 4m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk', 'apt-get', 'clean'] 4m35.6s DEBUG: Recording chroot state 4m36.2s INFO: PASS: Installation and purging test. 4m36.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/shm'] 4m36.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/shm'] 4m36.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/console'] 4m36.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/console'] 4m36.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/ptmx'] 4m36.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/ptmx'] 4m36.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/pts'] 4m36.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/dev/pts'] 4m36.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/proc'] 4m36.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk/proc'] 4m36.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 4m36.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvbt5eskk'] 4m36.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvbt5eskk 4m36.7s INFO: PASS: All tests. 4m36.7s INFO: piuparts run ends. ret=0 End: 2024-07-15 18:55:43 GMT