Start: 2023-12-15 18:20:47 GMT Package: ruby-bio Version: 2.0.4-1 Installed-Size: 2802 Maintainer: Debian Ruby Team Architecture: all Recommends: blast2, hmmer, mafft, muscle, probcons, sim4, t-coffee Suggests: clustalw, emboss Breaks: ruby-crb-blast (<< 0.6.9-4) Description: Ruby tools for computational molecular biology Homepage: https://bioruby.org/ Description-md5: 9551e5ebe8c49f9d9485b7f15547f082 Ruby-Versions: all Section: ruby Priority: optional Filename: pool/main/r/ruby-bio/ruby-bio_2.0.4-1_all.deb Size: 654684 MD5sum: 71ac9d4472c008dd893f83968bf9159e SHA256: d1d2b4753b66f36b2b2ecd0e44c664a83dc4dee6def58f412dc0911b0aa63d3f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt ruby-bio=2.0.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt ruby-bio=2.0.4-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppa0va9lo 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppa0va9lo 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppa0va9lo/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8787 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 2s (9941 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libgnutls30 libsystemd0 libudev1 perl-base tzdata 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7179 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u4 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u3 [2755 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u3 [606 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u1 [1404 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.19-1~deb12u1 [331 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.19-1~deb12u1 [108 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2023c-5+deb12u1 [296 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7179 kB in 0s (91.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u4_amd64.deb ... Unpacking base-files (12.4+deb12u4) over (12.4+deb12u2) ... Setting up base-files (12.4+deb12u4) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../perl-base_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl-base (5.36.0-7+deb12u1) over (5.36.0-7) ... Setting up perl-base (5.36.0-7+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u3_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u3) over (2.36-9+deb12u2) ... Setting up libc6:amd64 (2.36-9+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u3_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u3) over (2.36-9+deb12u2) ... Setting up libc-bin (2.36-9+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u1) over (3.7.9-2) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.19-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.19-1~deb12u1) over (252.17-1~deb12u1) ... Setting up libsystemd0:amd64 (252.19-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../libudev1_252.19-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.19-1~deb12u1) over (252.17-1~deb12u1) ... Setting up libudev1:amd64 (252.19-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../tzdata_2023c-5+deb12u1_all.deb ... Unpacking tzdata (2023c-5+deb12u1) over (2023c-5) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 15 18:20:53 UTC 2023. Universal Time is now: Fri Dec 15 18:20:53 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.36-9+deb12u3) ... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', '-yf', 'dist-upgrade'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s DUMP: c39ed9ca72afa1f69a1eea88b0965329 - 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.7s INFO: Running scripts post_setup 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_dummy_users'] 0m7.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_dummy_users'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_forbid_home'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'clean'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'clean'] 0m8.0s DEBUG: Recording chroot state 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u3 install ok installed libc6:amd64 libc6 2.36-9+deb12u3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.19-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.19-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tzdata tzdata 2023c-5+deb12u1 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-divert', '--list'] 0m8.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-divert', '--list'] 0m8.5s INFO: Running scripts is_testable 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/is_testable_uninstallable'] 0m8.5s INFO: apt-cache does not know about any of the requested packages 0m8.5s INFO: Running scripts pre_test 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_test_exceptions'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_test_root_password'] 0m8.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_test_root_password'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m8.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m9.4s DEBUG: No broken symlinks as far as we can find. 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m10.2s DEBUG: No broken symlinks as far as we can find. 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-cache', 'policy'] 0m10.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.4,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-cache', 'policy'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-cache', 'policy', 'ruby-bio'] 0m10.9s DUMP: ruby-bio: Installed: (none) Candidate: 2.0.4-1 Version table: 2.0.4-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-cache', 'policy', 'ruby-bio'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', '-y', 'install', 'ruby-bio=2.0.4-1'] 0m28.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: amap-align blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign krb5-locales libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libclone-perl libconvert-binhex-perl libdata-dump-perl libdivsufsort3 libedit2 libencode-locale-perl libexpat1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfile-listing-perl libfont-afm-perl libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgssapi-krb5-2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmpfr6 libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnsl2 libpcre3 libperl5.36 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libregexp-ipv6-perl libruby libruby3.1 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl3 libtask-weaken-perl libtimedate-perl libtirpc-common libtirpc3 libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft mailcap med-config media-types menu mummer muscle mustang ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.36 perl-openssl-defaults poa prank probcons proda python3 python3-minimal python3.11 python3.11-minimal rake readline-common ruby ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration sensible-utils shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xz-utils zip Suggested packages: blends-doc bzip2-doc clustalx seaview wise gawk-doc hmmer-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl gdbm-l10n low-memory-monitor gpm krb5-doc krb5-user libcrypt-ssleay-perl libapache2-mod-perl2 libmime-lite-perl libnet-jabber-perl libsub-name-perl libbusiness-isbn-perl libauthen-ntlm-perl libxml-sax-expatxs-perl menu-l10n gksu | kde-cli-tools | ktsuss mustang-testdata perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl debhelper blast2 probcons-extra python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binutils binfmt-support readline-doc ri ruby-dev emboss bundler boxshade t-coffee-examples pymol rasmol Recommended packages: blast2 The following NEW packages will be installed: amap-align blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign krb5-locales libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libclone-perl libconvert-binhex-perl libdata-dump-perl libdivsufsort3 libedit2 libencode-locale-perl libexpat1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfile-listing-perl libfont-afm-perl libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgssapi-krb5-2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmpfr6 libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnsl2 libpcre3 libperl5.36 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libregexp-ipv6-perl libruby libruby3.1 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl3 libtask-weaken-perl libtimedate-perl libtirpc-common libtirpc3 libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft mailcap med-config media-types menu mummer muscle mustang ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.36 perl-openssl-defaults poa prank probcons proda python3 python3-minimal python3.11 python3.11-minimal rake readline-common ruby ruby-bio ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration sensible-utils shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xz-utils zip 0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 78.5 MB of archives. After this operation, 358 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsigsegv2 amd64 2.14-1 [37.2 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 gawk amd64 1:5.2.1-2 [673 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:31 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 krb5-locales all 1.20.1-2+deb12u1 [62.7 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 xz-utils amd64 5.4.1-0.2 [471 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 menu amd64 2.1.49 [371 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 blends-common all 0.7.5 [25.2 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 clustalo amd64 1.2.4-7 [260 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 dialign-tx-data all 1.0.2-14 [874 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 dialign-tx amd64 1.0.2-14+b1 [86.6 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 mummer amd64 3.23+dfsg-8 [662 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 javascript-common all 11+nmu1 [6260 B] Get:59 http://deb.debian.org/debian bookworm/main amd64 kalign amd64 1:3.3.5-1 [132 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libauthen-sasl-perl all 2.1600-3 [43.9 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libconvert-binhex-perl all 1.125-3 [27.4 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libdata-dump-perl all 1.25-1 [28.4 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libfcgi0ldbl amd64 2.4.2-2 [26.1 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libfcgi-bin amd64 2.4.2-2 [12.9 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libfcgi-perl amd64 0.82+ds-2 [25.2 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libfont-afm-perl all 1.20-4 [13.1 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2 [1207 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libgpm2 amd64 1.20.7-10+b1 [14.2 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:81 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libhtml-format-perl all 2.16-2 [38.8 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libhttp-daemon-perl all 6.16-1 [23.5 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libio-sessiondata-perl all 1.03-3 [6316 B] Get:94 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:95 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.68-1 [186 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libnet-smtp-ssl-perl all 1.04-2 [6548 B] Get:106 http://deb.debian.org/debian bookworm/main amd64 libmailtools-perl all 2.21-2 [95.6 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libmime-tools-perl all 5.510-1 [213 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 rubygems-integration all 1.18 [6704 B] Get:114 http://deb.debian.org/debian bookworm/main amd64 ruby3.1 amd64 3.1.2-7 [663 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 ruby-rubygems all 3.3.15-2 [293 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 ruby amd64 1:3.1 [5868 B] Get:117 http://deb.debian.org/debian bookworm/main amd64 rake all 13.0.6-3 [83.9 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 ruby-sdbm amd64 1.0.0-5+b1 [15.4 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libruby3.1 amd64 3.1.2-7 [5401 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libruby amd64 1:3.1 [4972 B] Get:125 http://deb.debian.org/debian bookworm/main amd64 libtask-weaken-perl all 1.06-2 [9364 B] Get:126 http://deb.debian.org/debian bookworm/main amd64 libxml-parser-perl amd64 2.46-4 [201 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libsoap-lite-perl all 1.27-3 [239 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libxml-sax-expat-perl all 0.51-2 [11.1 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libxmlrpc-lite-perl all 0.717-5 [22.4 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 lynx-common all 2.9.0dev.12-1 [1166 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 lynx amd64 2.9.0dev.12-1 [637 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 mafft amd64 7.505-1 [1078 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 med-config all 3.8.1 [11.1 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 muscle amd64 1:5.1.0-1 [297 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 mustang amd64 3.2.4-1 [105 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] Get:145 http://deb.debian.org/debian bookworm/main amd64 poa amd64 2.0+20060928-8 [53.2 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 probcons amd64 1.12-14 [119 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 proda amd64 1.0-13 [64.9 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 ruby-bio all 2.0.4-1 [655 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1032 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 tm-align amd64 20190822+dfsg-2 [865 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 xdg-user-dirs amd64 0.18-1 [54.4 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.5 MB in 1s (106 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6100 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8175 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2_amd64.deb ... Unpacking gawk (1:5.2.1-2) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libssl3:amd64 (3.0.11-1~deb12u2) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8691 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../02-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../08-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../09-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../10-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../11-libsqlite3-0_3.40.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../12-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../13-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... 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Unpacking dialign-tx-data (1.0.2-14) ... Selecting previously unselected package dialign-tx. Preparing to unpack .../020-dialign-tx_1.0.2-14+b1_amd64.deb ... Unpacking dialign-tx (1.0.2-14+b1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../021-libglib2.0-0_2.74.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2) ... Selecting previously unselected package exonerate. Preparing to unpack .../022-exonerate_2.4.0-5_amd64.deb ... Unpacking exonerate (2.4.0-5) ... Selecting previously unselected package mummer. Preparing to unpack .../023-mummer_3.23+dfsg-8_amd64.deb ... Unpacking mummer (3.23+dfsg-8) ... Selecting previously unselected package fsa. Preparing to unpack .../024-fsa_1.15.9+dfsg-6_amd64.deb ... Unpacking fsa (1.15.9+dfsg-6) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../025-libdivsufsort3_2.0.1-5_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-5) ... Selecting previously unselected package hmmer. Preparing to unpack .../026-hmmer_3.3.2+dfsg-1_amd64.deb ... Unpacking hmmer (3.3.2+dfsg-1) ... Selecting previously unselected package javascript-common. Preparing to unpack .../027-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package kalign. Preparing to unpack .../028-kalign_1%3a3.3.5-1_amd64.deb ... Unpacking kalign (1:3.3.5-1) ... Selecting previously unselected package libauthen-sasl-perl. Preparing to unpack .../029-libauthen-sasl-perl_2.1600-3_all.deb ... Unpacking libauthen-sasl-perl (2.1600-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../030-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../031-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... 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Unpacking libfcgi0ldbl:amd64 (2.4.2-2) ... Selecting previously unselected package libfcgi-bin. Preparing to unpack .../038-libfcgi-bin_2.4.2-2_amd64.deb ... Unpacking libfcgi-bin (2.4.2-2) ... Selecting previously unselected package libfcgi-perl. Preparing to unpack .../039-libfcgi-perl_0.82+ds-2_amd64.deb ... Unpacking libfcgi-perl (0.82+ds-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../040-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../041-libhttp-date-perl_6.05-2_all.deb ... Unpacking libhttp-date-perl (6.05-2) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../042-libfile-listing-perl_6.15-1_all.deb ... Unpacking libfile-listing-perl (6.15-1) ... Selecting previously unselected package libfont-afm-perl. Preparing to unpack .../043-libfont-afm-perl_1.20-4_all.deb ... 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Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-10+b1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up probcons (1.12-14) ... Setting up libfcgi0ldbl:amd64 (2.4.2-2) ... Setting up poa (2.0+20060928-8) ... Setting up xdg-user-dirs (0.18-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up gawk (1:5.2.1-2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libfcgi-bin (2.4.2-2) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up krb5-locales (1.20.1-2+deb12u1) ... Setting up file (1:5.44-3) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up muscle (1:5.1.0-1) ... Setting up bzip2 (1.0.8-5+b1) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libpcre3:amd64 (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up kalign (1:3.3.5-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libglib2.0-data (2.74.6-2) ... Setting up dialign-tx-data (1.0.2-14) ... Setting up mustang (3.2.4-1) ... Setting up libmbedcrypto7:amd64 (2.28.3-1) ... Setting up proda (1.0-13) ... Setting up sim4 (0.0.20121010-8) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up xz-utils (5.4.1-0.2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up lynx-common (2.9.0dev.12-1) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up ruby-webrick (1.8.1-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up dialign-tx (1.0.2-14+b1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up menu (2.1.49) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up exonerate (2.4.0-5) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up ruby-bio (2.0.4-1) ... Setting up libmbedx509-1:amd64 (2.28.3-1) ... Setting up libmbedtls14:amd64 (2.28.3-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up clustalo (1.2.4-7) ... Setting up tm-align (20190822+dfsg-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up shared-mime-info (2.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up ucf (3.0043+nmu1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up lynx (2.9.0dev.12-1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up rubygems-integration (1.18) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libdata-dump-perl (1.25-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up mummer (3.23+dfsg-8) ... Setting up libfcgi-perl (0.82+ds-2) ... Setting up mailcap (3.70+nmu1) ... Setting up liburi-perl (5.17-1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libio-sessiondata-perl (1.03-3) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libtask-weaken-perl (1.06-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libfont-afm-perl (1.20-4) ... Setting up mafft (7.505-1) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libauthen-sasl-perl (2.1600-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libconvert-binhex-perl (1.125-3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up python3 (3.11.2-1+b1) ... Setting up libhtml-format-perl (2.16-2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up libnet-smtp-ssl-perl (1.04-2) ... Setting up libmailtools-perl (2.21-2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-daemon-perl (6.16-1) ... Setting up libmime-tools-perl (5.510-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libruby:amd64 (1:3.1) ... Setting up libwww-perl (6.68-1) ... Setting up ruby-rubygems (3.3.15-2) ... Setting up ruby (1:3.1) ... Setting up rake (13.0.6-3) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libxml-parser-perl (2.46-4) ... Setting up libruby3.1:amd64 (3.1.2-7) ... Setting up libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ruby3.1 (3.1.2-7) ... Setting up libsoap-lite-perl (1.27-3) ... Setting up libxmlrpc-lite-perl (0.717-5) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for menu (2.1.49) ... Setting up blends-common (0.7.5) ... Setting up med-config (3.8.1) ... Adding group `med' (GID 150) ... Done. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', '-y', 'install', 'ruby-bio=2.0.4-1'] 0m28.1s INFO: Running scripts post_install 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_install_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_install_exceptions'] 0m28.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m30.3s DEBUG: No broken symlinks as far as we can find. 0m30.3s INFO: /bin converted to /usr/bin by /usr merge 0m30.3s INFO: /lib converted to /usr/lib by /usr merge 0m30.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m30.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m30.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m30.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m30.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m30.3s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m30.3s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m30.3s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m30.3s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m30.3s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m30.3s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m30.3s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m30.3s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m30.3s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m30.3s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m30.3s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m30.3s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m30.3s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m30.3s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m30.3s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m30.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m30.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m30.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m30.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m30.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m30.3s INFO: /sbin converted to /usr/sbin by /usr merge 0m31.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', '-ac', '--ignore-obsolete'] 0m32.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', '-ac', '--ignore-obsolete'] 0m32.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.9s DUMP: 0.15.6 0m32.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.9s INFO: Running adequate version 0.15.6 now. 0m32.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'ruby-bio'] 0m33.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'ruby-bio'] 0m33.0s INFO: Running scripts pre_remove 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/pre_remove_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.5s DUMP: install ok installed adduser adduser 3.134 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-2 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u4 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed blends-common blends-common 0.7.5 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed bzip2 bzip2 1.0.8-5+b1 install ok installed ca-certificates ca-certificates 20230311 install ok installed clustalo clustalo 1.2.4-7 install ok installed clustalw clustalw 2.1+lgpl-7 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed dialign-tx dialign-tx 1.0.2-14+b1 install ok installed dialign-tx-data dialign-tx-data 1.0.2-14 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed exonerate exonerate 2.4.0-5 install ok installed file file 1:5.44-3 install ok installed findutils findutils 4.9.0-4 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fsa fsa 1.15.9+dfsg-6 install ok installed gawk gawk 1:5.2.1-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hmmer hmmer 3.3.2+dfsg-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kalign kalign 1:3.3.5-1 install ok installed krb5-locales krb5-locales 1.20.1-2+deb12u1 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libargtable2-0 libargtable2-0 13-1.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-3 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u3 install ok installed libc6:amd64 libc6 2.36-9+deb12u3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libclass-inspector-perl libclass-inspector-perl 1.36-3 install ok installed libclone-perl:amd64 libclone-perl 0.46-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdata-dump-perl libdata-dump-perl 1.25-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libfcgi-bin libfcgi-bin 2.4.2-2 install ok installed libfcgi-perl libfcgi-perl 0.82+ds-2 install ok installed libfcgi0ldbl:amd64 libfcgi0ldbl 2.4.2-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-listing-perl libfile-listing-perl 6.15-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-4 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2 install ok installed libglib2.0-data libglib2.0-data 2.74.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u1 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-10+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhtml-form-perl libhtml-form-perl 6.11-1 install ok installed libhtml-format-perl libhtml-format-perl 2.16-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.81-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-6 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.16-1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-2 install ok installed libhttp-message-perl libhttp-message-perl 6.44-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.081-2 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u1 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmagic-mgc libmagic-mgc 1:5.44-3 install ok installed libmagic1:amd64 libmagic1 1:5.44-3 install ok installed libmailtools-perl libmailtools-perl 2.21-2 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.3-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.3-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.3-1 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmime-tools-perl libmime-tools-perl 5.510-1 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libncurses6:amd64 libncurses6 6.4-4 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnet-http-perl libnet-http-perl 6.22-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-2 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.92-2+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed libregexp-ipv6-perl libregexp-ipv6-perl 0.03-3 install ok installed libruby:amd64 libruby 1:3.1 install ok installed libruby3.1:amd64 libruby3.1 3.1.2-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsigsegv2:amd64 libsigsegv2 2.14-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssl3:amd64 libssl3 3.0.11-1~deb12u2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.19-1~deb12u1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-2 install ok installed libudev1:amd64 libudev1 252.19-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed liburi-perl liburi-perl 5.17-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libwww-perl libwww-perl 6.68-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0207+dfsg+really+2.0134-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-2 install ok installed libxml-parser-perl libxml-parser-perl 2.46-4 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-3 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-2 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-3 install ok installed libxml-simple-perl libxml-simple-perl 2.25-2 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed lynx lynx 2.9.0dev.12-1 install ok installed lynx-common lynx-common 2.9.0dev.12-1 install ok installed mafft mafft 7.505-1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed med-config med-config 3.8.1 install ok installed media-types media-types 10.0.0 install ok installed menu menu 2.1.49 install ok installed mount mount 2.38.1-5+b1 install ok installed mummer mummer 3.23+dfsg-8 install ok installed muscle muscle 1:5.1.0-1 install ok installed mustang mustang 3.2.4-1 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-3+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.0.11-1~deb12u2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b1 install ok installed poa poa 2.0+20060928-8 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed probcons probcons 1.12-14 install ok installed proda proda 1.0-13 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3.11 python3.11 3.11.2-6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6 install ok installed rake rake 13.0.6-3 install ok installed readline-common readline-common 8.2-1.3 install ok installed ruby ruby 1:3.1 install ok installed ruby-bio ruby-bio 2.0.4-1 install ok installed ruby-net-telnet ruby-net-telnet 0.2.0-1 install ok installed ruby-rubygems ruby-rubygems 3.3.15-2 install ok installed ruby-sdbm:amd64 ruby-sdbm 1.0.0-5+b1 install ok installed ruby-webrick ruby-webrick 1.8.1-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.2-2 install ok installed ruby3.1 ruby3.1 3.1.2-7 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed shared-mime-info shared-mime-info 2.2-1 install ok installed sim4 sim4 0.0.20121010-8 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed t-coffee t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 install ok installed tar tar 1.34+dfsg-1.2 install ok installed tm-align tm-align 20190822+dfsg-2 install ok installed tzdata tzdata 2023c-5+deb12u1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 35 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed xdg-user-dirs xdg-user-dirs 0.18-1 install ok installed xz-utils xz-utils 5.4.1-0.2 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'remove', 'amap-align', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'krb5-locales', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libclone-perl:amd64', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libedit2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu72:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnsl2:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libregexp-ipv6-perl', 'libruby:amd64', 'libruby3.1:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xz-utils', 'zip', 'ruby-bio'] 0m38.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align blends-common bzip2 ca-certificates clustalo clustalw dialign-tx dialign-tx-data exonerate file fonts-lato fsa gawk hmmer javascript-common kalign krb5-locales libargtable2-0 libauthen-sasl-perl libbsd0 libclass-inspector-perl libclone-perl libconvert-binhex-perl libdata-dump-perl libdivsufsort3 libedit2 libencode-locale-perl libexpat1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfile-listing-perl libfont-afm-perl libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgssapi-krb5-2 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-sessiondata-perl libio-socket-ssl-perl libio-stringy-perl libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblmdb0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmime-tools-perl libmpfr6 libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnsl2 libpcre3 libperl5.36 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 libregexp-ipv6-perl libruby libruby3.1 libsigsegv2 libsoap-lite-perl libsqlite3-0 libssl3 libtask-weaken-perl libtimedate-perl libtirpc-common libtirpc3 libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-simple-perl libxml2 libxmlrpc-lite-perl libyaml-0-2 lynx lynx-common mafft mailcap med-config media-types menu mummer muscle mustang ncbi-blast+ ncbi-data netbase openssl perl perl-modules-5.36 perl-openssl-defaults poa prank probcons proda python3 python3-minimal python3.11 python3.11-minimal rake readline-common ruby ruby-bio ruby-net-telnet ruby-rubygems ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration sensible-utils shared-mime-info sim4 t-coffee tm-align ucf unzip xdg-user-dirs xz-utils zip 0 upgraded, 0 newly installed, 156 to remove and 0 not upgraded. After this operation, 358 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16341 files and directories currently installed.) Removing amap-align (2.2+git20080214.600fc29+dfsg-2) ... Removing med-config (3.8.1) ... Removing blends-common (0.7.5) ... Removing bzip2 (1.0.8-5+b1) ... Removing libxml-simple-perl (2.25-2) ... Removing libxml-sax-expat-perl (0.51-2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing clustalo (1.2.4-7) ... Removing clustalw (2.1+lgpl-7) ... Removing dialign-tx (1.0.2-14+b1) ... Removing dialign-tx-data (1.0.2-14) ... Removing fsa (1.15.9+dfsg-6) ... Removing exonerate (2.4.0-5) ... Removing file (1:5.44-3) ... Removing fonts-lato (2.0-2.1) ... Removing mummer (3.23+dfsg-8) ... Removing gawk (1:5.2.1-2) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing hmmer (3.3.2+dfsg-1) ... Removing javascript-common (11+nmu1) ... Removing kalign (1:3.3.5-1) ... Removing krb5-locales (1.20.1-2+deb12u1) ... Removing libargtable2-0 (13-1.1) ... Removing libauthen-sasl-perl (2.1600-3) ... Removing lynx (2.9.0dev.12-1) ... Removing libxmlrpc-lite-perl (0.717-5) ... Removing libsoap-lite-perl (1.27-3) ... Removing libclass-inspector-perl (1.36-3) ... Removing libmime-tools-perl (5.510-1) ... Removing libconvert-binhex-perl (1.125-3) ... Removing libdata-dump-perl (1.25-1) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing ncbi-blast+ (2.12.0+ds-3+b1) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6) ... Removing libfcgi-bin (2.4.2-2) ... Removing libfcgi-perl (0.82+ds-2) ... Removing libfcgi0ldbl:amd64 (2.4.2-2) ... Removing libhtml-format-perl (2.16-2) ... Removing libfont-afm-perl (1.20-4) ... Removing mailcap (3.70+nmu1) ... Removing mafft (7.505-1) ... Removing libhttp-daemon-perl (6.16-1) ... Removing libmailtools-perl (2.21-2) ... Removing libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing tm-align (20190822+dfsg-2) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing shared-mime-info (2.2-1) ... Removing libglib2.0-0:amd64 (2.74.6-2) ... Removing libglib2.0-data (2.74.6-2) ... Removing muscle (1:5.1.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libgpm2:amd64 (1.20.7-10+b1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Removing libhtml-form-perl (6.11-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libio-sessiondata-perl (1.03-3) ... Removing libnet-smtp-ssl-perl (1.04-2) ... Removing libio-stringy-perl (2.111-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libmagic1:amd64 (1:5.44-3) ... Removing libmagic-mgc (1:5.44-3) ... Removing libmbedtls14:amd64 (2.28.3-1) ... Removing libmbedx509-1:amd64 (2.28.3-1) ... Removing libmbedcrypto7:amd64 (2.28.3-1) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libpcre3:amd64 (2:8.39-15) ... Removing libpython3.11-minimal:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libsigsegv2:amd64 (2.14-1) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libtask-weaken-perl (1.06-2) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libxml-namespacesupport-perl (1.12-2) ... Removing libxml-sax-base-perl (1.09-3) ... Removing lynx-common (2.9.0dev.12-1) ... Removing media-types (10.0.0) ... Removing menu (2.1.49) ... Removing mustang (3.2.4-1) ... Removing ncbi-data (6.1.20170106+dfsg1-10) ... Removing poa (2.0+20060928-8) ... Removing prank (0.0.170427+dfsg-3) ... Removing probcons (1.12-14) ... Removing proda (1.0-13) ... Removing readline-common (8.2-1.3) ... Removing ruby-bio (2.0.4-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.17+nmu1) ... Removing sim4 (0.0.20121010-8) ... Removing t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Removing unzip (6.0-28) ... Removing xdg-user-dirs (0.18-1) ... Removing xz-utils (5.4.1-0.2) ... Removing zip (3.0-13) ... Removing libxml-parser-perl (2.46-4) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libio-socket-ssl-perl (2.081-2) ... Removing libnet-ssleay-perl:amd64 (1.92-2+b1) ... Removing perl-openssl-defaults:amd64 (7+b1) ... Removing libruby3.1:amd64 (3.1.2-7) ... Removing rake (13.0.6-3) ... Removing ruby (1:3.1) ... Removing ruby-rubygems (3.3.15-2) ... Removing libwww-perl (6.68-1) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libhttp-negotiate-perl (6.01-2) ... Removing ruby-sdbm:amd64 (1.0.0-5+b1) ... Removing libfile-listing-perl (6.15-1) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.81-1) ... Removing libhtml-tagset-perl (3.20-6) ... Removing libncurses6:amd64 (6.4-4) ... Removing libnet-http-perl (6.22-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libruby:amd64 (1:3.1) ... Removing libtry-tiny-perl (0.31-2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing netbase (6.4) ... Removing ruby-net-telnet (0.2.0-1) ... Removing ruby-xmlrpc (0.3.2-2) ... Removing ruby-webrick (1.8.1-1) ... Removing ruby3.1 (3.1.2-7) ... Removing rubygems-integration (1.18) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.44-1) ... Removing libclone-perl:amd64 (0.46-1) ... Removing libencode-locale-perl (1.05-3) ... Removing libhttp-date-perl (6.05-2) ... Removing libio-html-perl (1.004-3) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing liburi-perl (5.17-1) ... Removing libregexp-ipv6-perl (0.03-3) ... Removing openssl (3.0.11-1~deb12u2) ... Removing libssl3:amd64 (3.0.11-1~deb12u2) ... Removing libtimedate-perl (2.3300-2) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'remove', 'amap-align', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'krb5-locales', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libclone-perl:amd64', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libedit2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu72:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnsl2:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libregexp-ipv6-perl', 'libruby:amd64', 'libruby3.1:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xz-utils', 'zip', 'ruby-bio'] 0m38.3s INFO: Running scripts post_remove 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_remove_exceptions'] 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_remove_exceptions'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--purge', 'amap-align', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'krb5-locales', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libclone-perl:amd64', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libedit2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu72:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnsl2:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libregexp-ipv6-perl', 'libruby:amd64', 'libruby3.1:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xz-utils', 'zip'] 0m38.7s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed (Reading database ... 6152 files and directories currently installed.) Purging configuration files for blends-common (0.7.5) ... dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-7) ... dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fsa which isn't installed Purging configuration files for gawk (1:5.2.1-2) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-bin which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi0ldbl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.44-3) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpcre3 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libregexp-ipv6-perl which isn't installed dpkg: warning: ignoring request to remove libruby which isn't installed dpkg: warning: ignoring request to remove libruby3.1 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-3) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for lynx (2.9.0dev.12-1) ... Purging configuration files for lynx-common (2.9.0dev.12-1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for med-config (3.8.1) ... Purging configuration files for media-types (10.0.0) ... Purging configuration files for menu (2.1.49) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-10) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.0.11-1~deb12u2) ... Purging configuration files for perl (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed dpkg: warning: ignoring request to remove prank which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6) ... dpkg: warning: ignoring request to remove rake which isn't installed Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-sdbm which isn't installed dpkg: warning: ignoring request to remove ruby-webrick which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby3.1 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.2-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... Purging configuration files for xdg-user-dirs (0.18-1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--purge', 'amap-align', 'blends-common', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'dialign-tx', 'dialign-tx-data', 'exonerate', 'file', 'fonts-lato', 'fsa', 'gawk', 'hmmer', 'javascript-common', 'kalign', 'krb5-locales', 'libargtable2-0', 'libauthen-sasl-perl', 'libbsd0:amd64', 'libclass-inspector-perl', 'libclone-perl:amd64', 'libconvert-binhex-perl', 'libdata-dump-perl', 'libdivsufsort3:amd64', 'libedit2:amd64', 'libencode-locale-perl', 'libexpat1:amd64', 'libfcgi-bin', 'libfcgi-perl', 'libfcgi0ldbl:amd64', 'libfile-listing-perl', 'libfont-afm-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgssapi-krb5-2:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu72:amd64', 'libio-html-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblmdb0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmime-tools-perl', 'libmpfr6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl:amd64', 'libnsl2:amd64', 'libpcre3:amd64', 'libperl5.36:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libregexp-ipv6-perl', 'libruby:amd64', 'libruby3.1:amd64', 'libsigsegv2:amd64', 'libsoap-lite-perl', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtask-weaken-perl', 'libtimedate-perl', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libyaml-0-2:amd64', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'med-config', 'media-types', 'menu', 'mummer', 'muscle', 'mustang', 'ncbi-blast+', 'ncbi-data', 'netbase', 'openssl', 'perl', 'perl-modules-5.36', 'perl-openssl-defaults:amd64', 'poa', 'prank', 'probcons', 'proda', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'rake', 'readline-common', 'ruby', 'ruby-net-telnet', 'ruby-rubygems', 'ruby-sdbm:amd64', 'ruby-webrick', 'ruby-xmlrpc', 'ruby3.1', 'rubygems-integration', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tm-align', 'ucf', 'unzip', 'xdg-user-dirs', 'xz-utils', 'zip'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--purge', 'ruby-bio'] 0m38.7s DUMP: dpkg: warning: ignoring request to remove ruby-bio which isn't installed 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--purge', 'ruby-bio'] 0m38.7s INFO: Running scripts post_purge 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_purge_exceptions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_purge_exceptions'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--purge', '--pending'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--purge', '--pending'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--remove', '--pending'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg', '--remove', '--pending'] 0m38.8s INFO: Running scripts post_test 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_test_exceptions'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'tmp/scripts/post_test_exceptions'] 0m38.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m39.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m39.7s DEBUG: No broken symlinks as far as we can find. 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-divert', '--list'] 0m39.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'dpkg-divert', '--list'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'clean'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppa0va9lo', 'apt-get', 'clean'] 0m39.8s DEBUG: Recording chroot state 0m40.3s INFO: PASS: Installation and purging test. 0m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/shm'] 0m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/shm'] 0m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/console'] 0m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/console'] 0m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/ptmx'] 0m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/ptmx'] 0m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/pts'] 0m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/dev/pts'] 0m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/proc'] 0m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppa0va9lo/proc'] 0m40.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m40.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppa0va9lo'] 0m40.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppa0va9lo 0m40.8s INFO: PASS: All tests. 0m40.8s INFO: piuparts run ends. ret=0 End: 2023-12-15 18:21:28 GMT