Start: 2024-07-14 06:57:38 GMT Package: busco Version: 5.4.4-1 Installed-Size: 410 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Description: benchmarking sets of universal single-copy orthologs Homepage: https://gitlab.com/ezlab/busco Description-md5: 40a9b5e0784ce3cc899761f6a14504c5 Section: science Priority: optional Filename: pool/main/b/busco/busco_5.4.4-1_amd64.deb Size: 71788 MD5sum: 50c8e27a0d3a3df3da74214c5791c8b7 SHA256: 98891e95d5baf338c3c14ac530f765c064634118e24d2c89b2c84aad3fe2a536 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt busco=5.4.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt busco=5.4.4-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-30-amd64 #1 SMP Debian 5.10.218-1 (2024-06-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmps_0vp820 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmps_0vp820 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps_0vp820', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps_0vp820', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps_0vp820/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps_0vp820/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmps_0vp820/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmps_0vp820/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'update'] 0m3.8s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8788 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 2s (6500 kB/s) Reading package lists... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'update'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files bash bsdutils libblkid1 libc-bin libc6 libgnutls30 libmount1 libseccomp2 libsmartcols1 libsystemd0 libudev1 libuuid1 mount util-linux util-linux-extra 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8781 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u6 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b7 [1490 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+deb12u1 [94.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u7 [2758 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+deb12u1 [107 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+deb12u1 [110 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+deb12u1 [1176 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u7 [607 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+deb12u1 [134 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+deb12u1 [147 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u3 [1405 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+deb12u1 [165 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+deb12u1 [46.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.26-1~deb12u2 [332 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.26-1~deb12u2 [108 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+deb12u1 [28.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8781 kB in 0s (82.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u6_amd64.deb ... Unpacking base-files (12.4+deb12u6) over (12.4+deb12u5) ... Setting up base-files (12.4+deb12u6) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2+b7_amd64.deb ... Unpacking bash (5.2.15-2+b7) over (5.2.15-2+b2) ... Setting up bash (5.2.15-2+b7) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6098 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5+deb12u1_amd64.deb ... Unpacking bsdutils (1:2.38.1-5+deb12u1) over (1:2.38.1-5+b1) ... Setting up bsdutils (1:2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6097 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u7_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u7) over (2.36-9+deb12u4) ... Setting up libc6:amd64 (2.36-9+deb12u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6097 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6096 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.38.1-5+deb12u1_amd64.deb ... Unpacking util-linux-extra (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up util-linux-extra (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6095 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-5+deb12u1_amd64.deb ... Unpacking util-linux (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up util-linux (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6094 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u7_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u7) over (2.36-9+deb12u4) ... Setting up libc-bin (2.36-9+deb12u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6094 files and directories currently installed.) Preparing to unpack .../mount_2.38.1-5+deb12u1_amd64.deb ... Unpacking mount (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Preparing to unpack .../libblkid1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libblkid1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6092 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u3_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u3) over (3.7.9-2+deb12u2) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6092 files and directories currently installed.) Preparing to unpack .../libmount1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libmount1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.38.1-5+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6091 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1+deb12u1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-1+deb12u1) over (2.5.4-1+b3) ... Setting up libseccomp2:amd64 (2.5.4-1+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6090 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.26-1~deb12u2_amd64.deb ... Unpacking libsystemd0:amd64 (252.26-1~deb12u2) over (252.22-1~deb12u1) ... Setting up libsystemd0:amd64 (252.26-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6090 files and directories currently installed.) Preparing to unpack .../libudev1_252.26-1~deb12u2_amd64.deb ... Unpacking libudev1:amd64 (252.26-1~deb12u2) over (252.22-1~deb12u1) ... Setting up libudev1:amd64 (252.26-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6090 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-5+deb12u1_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-5+deb12u1) over (2.38.1-5+b1) ... Setting up libuuid1:amd64 (2.38.1-5+deb12u1) ... Setting up mount (2.38.1-5+deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for debianutils (5.7-0.5~deb12u1) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', '-yf', 'dist-upgrade'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.5s INFO: Running scripts post_setup 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_dummy_users'] 0m8.4s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_dummy_users'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_forbid_home'] 0m8.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_forbid_home'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_minimize'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_minimize'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_zz_backports'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_setup_zz_backports'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'clean'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'clean'] 0m8.5s DEBUG: Recording chroot state 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-divert', '--list'] 0m9.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-divert', '--list'] 0m9.1s INFO: Running scripts is_testable 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s INFO: apt-cache does not know about any of the requested packages 0m9.1s INFO: Running scripts pre_test 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_test_root_password'] 0m9.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_test_root_password'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 0m9.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 0m10.4s DEBUG: No broken symlinks as far as we can find. 0m10.4s INFO: Running scripts pre_install 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_database-server'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_database-server'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_exceptions'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_exceptions'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_extras'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_extras'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_log_alternatives'] 0m10.4s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_install_log_alternatives'] 0m10.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 0m10.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 0m11.6s DEBUG: No broken symlinks as far as we can find. 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-cache', 'policy'] 0m12.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-cache', 'policy'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-cache', 'policy', 'busco'] 0m12.6s DUMP: busco: Installed: (none) Candidate: 5.4.4-1 Version table: 5.4.4-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-cache', 'policy', 'busco'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', '-y', 'install', 'busco=5.4.4-1'] 1m24.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: bbmap ca-certificates ca-certificates-java fontconfig-config fonts-urw-base35 hmmer java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libdeflate0 libdivsufsort3 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libpcsclite1 libperl5.36 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff6 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openjdk-17-jre-headless openssl perl perl-modules-5.36 prodigal python3 python3-biopython python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre hmmer-doc default-jre libasound2-plugins alsa-utils libcommons-io-java-doc cups-common gdbm-l10n low-memory-monitor krb5-doc krb5-user liblcms2-utils liblog4j1.2-java-doc libmail-java pcscd sensible-utils libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pil-doc python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3.11-venv python3.11-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: pigz alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 bzip2 file xz-utils netbase python-biopython-doc ncbi-blast+ python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile The following NEW packages will be installed: bbmap busco ca-certificates ca-certificates-java fontconfig-config fonts-urw-base35 hmmer java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libdeflate0 libdivsufsort3 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libpcsclite1 libperl5.36 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff6 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openjdk-17-jre-headless openssl perl perl-modules-5.36 prodigal python3 python3-biopython python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After this operation, 451 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:18 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:29 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.13-1~deb12u1 [1418 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get:35 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libcommons-io-java all 2.11.0-2 [319 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libmpj-java all 0.44+dfsg-4 [447 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:42 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u5 [245 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u3 [398 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:55 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u3 [1400 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.11+9-1~deb12u1 [43.7 MB] Get:68 http://deb.debian.org/debian bookworm/main amd64 bbmap all 39.01+dfsg-2 [8740 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 busco amd64 5.4.4-1 [71.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 114 MB in 1s (102 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6094 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package python3.11-minimal. Preparing to unpack .../8-python3.11-minimal_3.11.2-6+deb12u2_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6+deb12u2) ... Setting up libssl3:amd64 (3.0.13-1~deb12u1) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6+deb12u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../11-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8958 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.0.13-1~deb12u1_amd64.deb ... Unpacking openssl (3.0.13-1~deb12u1) ... 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Unpacking libcommons-io-java (2.11.0-2) ... Selecting previously unselected package liblog4j1.2-java. Preparing to unpack .../09-liblog4j1.2-java_1.2.17-11_all.deb ... Unpacking liblog4j1.2-java (1.2.17-11) ... Selecting previously unselected package libmpj-java. Preparing to unpack .../10-libmpj-java_0.44+dfsg-4_all.deb ... Unpacking libmpj-java (0.44+dfsg-4) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../11-ca-certificates-java_20230710~deb12u1_all.deb ... Unpacking ca-certificates-java (20230710~deb12u1) ... Selecting previously unselected package java-common. Preparing to unpack .../12-java-common_0.74_all.deb ... Unpacking java-common (0.74) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../13-libavahi-common-data_0.8-10_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-10) ... Selecting previously unselected package libavahi-common3:amd64. 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Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../20-libfreetype6_2.12.1+dfsg-5+deb12u3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../21-libfontenc1_1%3a1.1.4-1_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../22-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../23-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../24-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../25-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../26-fontconfig-config_2.14.1-4_amd64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../27-libfontconfig1_2.14.1-4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.14.1-4) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../28-liblcms2-2_2.14-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.14-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../29-libjpeg62-turbo_1%3a2.1.5-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../30-libnspr4_2%3a4.35-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.35-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../31-libnss3_2%3a3.87.1-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.87.1-1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../32-libasound2-data_1.2.8-1_all.deb ... Unpacking libasound2-data (1.2.8-1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../33-libasound2_1.2.8-1+b1_amd64.deb ... Unpacking libasound2:amd64 (1.2.8-1+b1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../34-libglib2.0-0_2.74.6-2+deb12u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../35-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../36-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ... Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../37-libpcsclite1_1.9.9-2_amd64.deb ... Unpacking libpcsclite1:amd64 (1.9.9-2) ... Selecting previously unselected package openjdk-17-jre-headless:amd64. Preparing to unpack .../38-openjdk-17-jre-headless_17.0.11+9-1~deb12u1_amd64.deb ... Unpacking openjdk-17-jre-headless:amd64 (17.0.11+9-1~deb12u1) ... Selecting previously unselected package bbmap. Preparing to unpack .../39-bbmap_39.01+dfsg-2_all.deb ... Unpacking bbmap (39.01+dfsg-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../40-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../41-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../42-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../43-libblas3_3.11.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../44-libquadmath0_12.2.0-14_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-14) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../45-libgfortran5_12.2.0-14_amd64.deb ... Unpacking libgfortran5:amd64 (12.2.0-14) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../46-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../47-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../48-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../49-python3-pandas-lib_1.5.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../50-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../51-python3-renderpm_3.6.12-1+b1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.6.12-1+b1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../52-python3-reportlab-accel_3.6.12-1+b1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../53-libgomp1_12.2.0-14_amd64.deb ... Unpacking libgomp1:amd64 (12.2.0-14) ... Selecting previously unselected package libimagequant0:amd64. 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Preparing to unpack .../60-liblerc4_4.0.0+ds-2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../61-libwebp7_1.2.4-0.2+deb12u1_amd64.deb ... Unpacking libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../62-libtiff6_4.5.0-6+deb12u1_amd64.deb ... Unpacking libtiff6:amd64 (4.5.0-6+deb12u1) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../63-libwebpdemux2_1.2.4-0.2+deb12u1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../64-libwebpmux3_1.2.4-0.2+deb12u1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../65-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../66-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../67-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../68-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../69-python3-pil_9.4.0-1.1+deb12u1_amd64.deb ... Unpacking python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../70-python3-reportlab_3.6.12-1_all.deb ... Unpacking python3-reportlab (3.6.12-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../71-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../72-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../73-python3-biopython_1.80+dfsg-4+b1_amd64.deb ... Unpacking python3-biopython (1.80+dfsg-4+b1) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../74-libdivsufsort3_2.0.1-5_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-5) ... Selecting previously unselected package hmmer. Preparing to unpack .../75-hmmer_3.3.2+dfsg-1_amd64.deb ... Unpacking hmmer (3.3.2+dfsg-1) ... Selecting previously unselected package prodigal. Preparing to unpack .../76-prodigal_1%3a2.6.3-6_amd64.deb ... Unpacking prodigal (1:2.6.3-6) ... Selecting previously unselected package busco. Preparing to unpack .../77-busco_5.4.4-1_amd64.deb ... Unpacking busco (5.4.4-1) ... Setting up media-types (10.0.0) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up java-common (0.74) ... Setting up libcommons-cli-java (1.5.0-1) ... Setting up prodigal (1:2.6.3-6) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libasound2-data (1.2.8-1) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (3.0.13-1~deb12u1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up readline-common (8.2-1.3) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up xml-core (0.18+nmu1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.15-1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libmpj-java (0.44+dfsg-4) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libcups2:amd64 (2.4.2-3+deb12u5) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up mailcap (3.70+nmu1) ... Setting up mime-support (3.66) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up fontconfig-config (2.14.1-4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.11+9-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up bbmap (39.01+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up busco (5.4.4-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', '-y', 'install', 'busco=5.4.4-1'] 1m24.6s INFO: Running scripts post_install 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_install_exceptions'] 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_install_exceptions'] 1m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_install_log_alternatives'] 1m24.6s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=mailcap: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --quiet --install /usr/bin/open open /usr/bin/run-mailcap 30 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/run-mailcap.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-17-openjdk-amd64/bin/java 1711 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/bin/jpackage jpackage /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage 1711 --slave /usr/share/man/man1/jpackage.1.gz jpackage.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/jpackage.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool 1711 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry 1711 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=busco=5.4.4-1: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec 1711 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-17-openjdk-amd64/lib/jar.binfmt 1m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_install_log_alternatives'] 1m24.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 1m25.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 1m27.8s DEBUG: No broken symlinks as far as we can find. 1m27.8s INFO: /bin converted to /usr/bin by /usr merge 1m27.8s INFO: /lib converted to /usr/lib by /usr merge 1m27.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m27.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m27.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m27.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m27.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m27.8s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m27.8s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m27.8s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m27.8s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m27.8s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m27.8s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m27.8s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m27.8s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m27.8s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m27.8s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m27.8s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m27.8s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m27.8s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m27.8s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m27.8s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m27.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m27.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m27.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m27.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m27.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m27.8s INFO: /sbin converted to /usr/sbin by /usr merge 1m28.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps_0vp820', '-ac', '--ignore-obsolete'] 1m31.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps_0vp820', '-ac', '--ignore-obsolete'] 1m31.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m31.0s DUMP: 0.15.6 1m31.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m31.0s INFO: Running adequate version 0.15.6 now. 1m31.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'busco'] 1m31.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'busco'] 1m31.1s INFO: Running scripts pre_remove 1m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_exceptions'] 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/pre_remove_exceptions'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m34.0s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bbmap bbmap 39.01+dfsg-2 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed busco busco 5.4.4-1 install ok installed ca-certificates ca-certificates 20230311 install ok installed ca-certificates-java ca-certificates-java 20230710~deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hmmer hmmer 3.3.2+dfsg-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed java-common java-common 0.74 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libasound2:amd64 libasound2 1.2.8-1+b1 install ok installed libasound2-data libasound2-data 1.2.8-1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-10 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-10 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-10 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcommons-cli-java libcommons-cli-java 1.5.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.15-1 install ok installed libcommons-io-java libcommons-io-java 2.11.0-2 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libcups2:amd64 libcups2 2.4.2-3+deb12u5 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-1~deb12u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5+deb12u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libmpj-java libmpj-java 0.44+dfsg-4 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.35-1 install ok installed libnss3:amd64 libnss3 2:3.87.1-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.9-2 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.7.0-4.1 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssl3:amd64 libssl3 3.0.13-1~deb12u1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.4-0.2+deb12u1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.4-0.2+deb12u1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.11+9-1~deb12u1 install ok installed openssl openssl 3.0.13-1~deb12u1 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed prodigal prodigal 1:2.6.3-6 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-biopython python3-biopython 1.80+dfsg-4+b1 install ok installed python3-dateutil python3-dateutil 2.8.2-2 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-numpy python3-numpy 1:1.24.2-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-2 install ok installed python3-pil:amd64 python3-pil 9.4.0-1.1+deb12u1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.12-1+b1 install ok installed python3-reportlab python3-reportlab 3.6.12-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.12-1+b1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tz python3-tz 2022.7.1-4 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed readline-common readline-common 8.2-1.3 install ok installed sed sed 4.9-1 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 1m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'remove', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-urw-base35', 'hmmer', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'prodigal', 'python3', 'python3-biopython', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-tz', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'busco'] 2m20.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bbmap busco ca-certificates ca-certificates-java fontconfig-config fonts-urw-base35 hmmer java-common libapache-pom-java libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-parent-java libcups2 libdbus-1-3 libdeflate0 libdivsufsort3 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libncursesw6 libnsl2 libnspr4 libnss3 libopenjp2-7 libpcsclite1 libperl5.36 libpng16-16 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libraqm0 libreadline8 libsqlite3-0 libssl3 libtiff6 libtirpc-common libtirpc3 libwebp7 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openjdk-17-jre-headless openssl perl perl-modules-5.36 prodigal python3 python3-biopython python3-dateutil python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.11 python3.11-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 106 to remove and 0 not upgraded. After this operation, 451 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15383 files and directories currently installed.) Removing busco (5.4.4-1) ... Removing bbmap (39.01+dfsg-2) ... Removing openjdk-17-jre-headless:amd64 (17.0.11+9-1~deb12u1) ... Removing ca-certificates-java (20230710~deb12u1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing python3-biopython (1.80+dfsg-4+b1) ... Removing python3-renderpm:amd64 (3.6.12-1+b1) ... Removing fonts-urw-base35 (20200910-7) ... Removing hmmer (3.3.2+dfsg-1) ... Removing java-common (0.74) ... Removing libmpj-java (0.44+dfsg-4) ... Removing libcommons-codec-java (1.15-1) ... Removing libcommons-io-java (2.11.0-2) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libasound2:amd64 (1.2.8-1+b1) ... Removing libasound2-data (1.2.8-1) ... Removing libcups2:amd64 (2.4.2-3+deb12u5) ... Removing libavahi-client3:amd64 (0.8-10) ... Removing libavahi-common3:amd64 (0.8-10) ... Removing libavahi-common-data:amd64 (0.8-10) ... Removing python3-pandas (1.5.3+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Removing python3-numpy (1:1.24.2-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing xfonts-utils (1:7.7+6) ... Removing python3-reportlab (3.6.12-1) ... Removing python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Removing libraqm0:amd64 (0.7.0-4.1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libcommons-cli-java (1.5.0-1) ... Removing libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Removing python3-dateutil (2.8.2-2) ... Removing python3-six (1.16.0-4) ... Removing python3-pkg-resources (66.1.1-1) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing liblog4j1.2-java (1.2.17-11) ... Removing libnss3:amd64 (2:3.87.1-1) ... Removing libnspr4:amd64 (2:4.35-1) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libpcsclite1:amd64 (1.9.9-2) ... Removing libquadmath0:amd64 (12.2.0-14) ... Removing openssl (3.0.13-1~deb12u1) ... Removing libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Removing prodigal (1:2.6.3-6) ... Removing python3-tz (2022.7.1-4) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libssl3:amd64 (3.0.13-1~deb12u1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 2m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'remove', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-urw-base35', 'hmmer', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'prodigal', 'python3', 'python3-biopython', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-tz', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'busco'] 2m20.8s INFO: Running scripts post_remove 2m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_remove_exceptions'] 2m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_remove_exceptions'] 2m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--purge', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-urw-base35', 'hmmer', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'prodigal', 'python3', 'python3-biopython', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-tz', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 2m21.6s DUMP: dpkg: warning: ignoring request to remove bbmap which isn't installed (Reading database ... 6179 files and directories currently installed.) Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20230710~deb12u1) ... Purging configuration files for fontconfig-config (2.14.1-4) ... Purging configuration files for fonts-urw-base35 (20200910-7) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for java-common (0.74) ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblog4j1.2-java which isn't installed Purging configuration files for libmpj-java (0.44+dfsg-4) ... dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (10.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.11+9-1~deb12u1) ... Purging configuration files for openssl (3.0.13-1~deb12u1) ... Purging configuration files for perl (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed dpkg: warning: ignoring request to remove prodigal which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... Purging configuration files for readline-common (8.2-1.3) ... Purging configuration files for sgml-base (1.31) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... 2m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--purge', 'bbmap', 'ca-certificates', 'ca-certificates-java', 'fontconfig-config', 'fonts-urw-base35', 'hmmer', 'java-common', 'libapache-pom-java', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-io-java', 'libcommons-parent-java', 'libcups2:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdivsufsort3:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'liblog4j1.2-java', 'libmpj-java', 'libncursesw6:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libopenjp2-7:amd64', 'libpcsclite1:amd64', 'libperl5.36:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'libsqlite3-0:amd64', 'libssl3:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'mailcap', 'media-types', 'mime-support', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.36', 'prodigal', 'python3', 'python3-biopython', 'python3-dateutil', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-six', 'python3-tz', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 2m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--purge', 'busco'] 2m21.6s DUMP: dpkg: warning: ignoring request to remove busco which isn't installed 2m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--purge', 'busco'] 2m21.6s INFO: Running scripts post_purge 2m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_purge_exceptions'] 2m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_purge_exceptions'] 2m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--purge', '--pending'] 2m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--purge', '--pending'] 2m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--remove', '--pending'] 2m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg', '--remove', '--pending'] 2m21.6s INFO: Running scripts post_test 2m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_test_exceptions'] 2m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'tmp/scripts/post_test_exceptions'] 2m21.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 2m22.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 2m22.9s DEBUG: No broken symlinks as far as we can find. 2m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-divert', '--list'] 2m22.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'dpkg-divert', '--list'] 2m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'clean'] 2m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps_0vp820', 'apt-get', 'clean'] 2m22.9s DEBUG: Recording chroot state 2m23.6s INFO: PASS: Installation and purging test. 2m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/shm'] 2m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/shm'] 2m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/console'] 2m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/console'] 2m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/ptmx'] 2m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/ptmx'] 2m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/pts'] 2m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/dev/pts'] 2m24.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/proc'] 2m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps_0vp820/proc'] 2m24.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 2m24.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps_0vp820'] 2m24.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmps_0vp820 2m24.4s INFO: PASS: All tests. 2m24.4s INFO: piuparts run ends. ret=0 End: 2024-07-14 07:00:03 GMT