Start: 2024-03-03 00:00:16 GMT Package: q2-dada2 Version: 2022.11.2-2 Installed-Size: 2282 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2 (>= 1.24.0+dfsg-2~), r-cran-optparse, qiime (>= 2022.11.1), q2-types (>= 2022.11.1), python3-biom-format, python3-skbio Description: QIIME 2 plugin to work with adapters in sequence data Homepage: https://qiime2.org/ Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2022.11.2-2_amd64.deb Size: 1813388 MD5sum: 7dcc188af82e289841dc1825e6d37d41 SHA256: 2929f96f0e69130da54ed7631f4f372ced4ae0c9f36993da5069355d84964f17 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt q2-dada2=2022.11.2-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm --no-upgrade-test --apt q2-dada2=2022.11.2-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpg3ek3qfe 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpg3ek3qfe 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpg3ek3qfe/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpg3ek3qfe/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s INFO: Running scripts post_setup 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'clean'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'clean'] 0m3.6s DEBUG: Recording chroot state 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-divert', '--list'] 0m4.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 0m5.6s DEBUG: No broken symlinks as far as we can find. 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_log_alternatives'] 0m5.7s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_install_log_alternatives'] 0m5.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 0m6.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 0m7.0s DEBUG: No broken symlinks as far as we can find. 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-cache', 'policy'] 0m8.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-cache', 'policy'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-cache', 'policy', 'q2-dada2'] 0m8.0s DUMP: q2-dada2: Installed: (none) Candidate: 2022.11.2-2 Version table: 2022.11.2-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-cache', 'policy', 'q2-dada2'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', '-y', 'install', 'q2-dada2=2022.11.2-2'] 1m51.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdatrie1 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwloc15 libice6 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl3 libssw0 libstdc++-12-dev libsz2 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler media-types openssl python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-asttokens python3-attr python3-backcall python3-beniget python3-bibtexparser python3-biom-format python3-brotli python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-executing python3-flufl.lock python3-fonttools python3-fs python3-future python3-gast python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-jedi python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-natsort python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-prompt-toolkit python3-psutil python3-ptyprocess python3-public python3-pure-eval python3-pygments python3-pyparsing python3-pythran python3-pytz-deprecation-shim python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-stack-data python3-sympy python3-tk python3-traitlets python3-tz python3-tzlocal python3-ufolib2 python3-urllib3 python3-wcwidth python3-yaml python3.11 python3.11-dev python3.11-minimal q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto sensible-utils tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-12-locales cpp-12-doc cython-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc low-memory-monitor krb5-doc krb5-user libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils libstdc++-12-doc libtbb-doc tcl8.6 tk8.6 libxsimd-doc python3-doc python3-venv python-attr-doc python-biom-format-doc python-cycler-doc python3-objgraph python-flufl.lock-doc python-future-doc python-h5py-doc python-ipython-doc python-lockfile-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gfortran python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python-ply-doc python-psutil-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-all r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi r-bioc-variantannotation r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-cran-rmarkdown r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-rtracklayer r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-cran-digest r-bioc-sparsematrixstats r-cran-testthat r-bioc-graph r-bioc-biomart r-cran-jsonlite r-bioc-rhdf5 r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-viridis r-cran-bench r-cran-desc r-cran-polyclip r-cran-unitizer r-cran-profvis r-cran-rgeos r-cran-dbi r-cran-forcats r-cran-r.utils r-cran-rsqlite r-cran-waldo r-cran-sp r-cran-gridextra r-cran-magick r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-iterators r-cran-itertools r-cran-inline r-cran-xml r-cran-fs r-cran-usethis r-cran-dichromat r-cran-rlecuyer r-cran-blob r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr r-cran-pkgdown r-cran-zeallot readline-doc Recommended packages: manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-bs4 python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-tables python3-jinja2 python3-numba python3-olefile isympy-common q2cli q2templates q2-cutadapt q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio r-cran-progress r-cran-testit r-cran-survival r-cran-covr r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rmarkdown r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-runit r-cran-lubridate r-cran-domc r-cran-abind r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-rsqlite r-cran-mockr r-cran-formattable r-cran-generics r-cran-waldo r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdatrie1 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwloc15 libice6 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl3 libssw0 libstdc++-12-dev libsz2 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler media-types openssl python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-asttokens python3-attr python3-backcall python3-beniget python3-bibtexparser python3-biom-format python3-brotli python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-executing python3-flufl.lock python3-fonttools python3-fs python3-future python3-gast python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-jedi python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-natsort python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-prompt-toolkit python3-psutil python3-ptyprocess python3-public python3-pure-eval python3-pygments python3-pyparsing python3-pythran python3-pytz-deprecation-shim python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-stack-data python3-sympy python3-tk python3-traitlets python3-tz python3-tzlocal python3-ufolib2 python3-urllib3 python3-wcwidth python3-yaml python3.11 python3.11-dev python3.11-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto sensible-utils tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 331 newly installed, 0 to remove and 0 not upgraded. Need to get 329 MB of archives. After this operation, 1201 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:61 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:68 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:75 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:76 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u4 [45.4 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.76-1 [1930 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u4 [1897 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:85 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:86 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:90 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u5 [390 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:111 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:144 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libtbbmalloc2 amd64 2021.8.0-2 [46.3 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libtbbbind-2-5 amd64 2021.8.0-2 [13.5 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libtbb12 amd64 2021.8.0-2 [79.1 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libtbb-dev amd64 2021.8.0-2 [192 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libyajl2 amd64 2.1.0-3+deb12u2 [23.0 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-2 [26.0 MB] Get:167 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.17-1 [96.3 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.17-1 [14.4 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:173 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:176 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 python3-asttokens all 2.2.1-1 [19.8 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:182 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:183 http://deb.debian.org/debian bookworm/main amd64 python3-future all 0.18.2-6 [348 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 python3-bibtexparser all 1.1.0+ds-5 [31.8 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-h5py-serial amd64 3.7.0-8 [804 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 python3-h5py all 3.7.0-8 [10.3 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 python3-click all 8.1.3-2 [92.2 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:200 http://deb.debian.org/debian bookworm/main amd64 python3-biom-format amd64 2.1.12-3+b1 [128 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 python3-msgpack amd64 1.0.3-2+b1 [67.3 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 python3-cachecontrol all 0.12.12-2 [17.9 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:212 http://deb.debian.org/debian bookworm/main amd64 python3-dill all 0.3.6-1 [79.5 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 python3-executing all 1.2.0-2 [22.6 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 python3-public all 2.3-4 [24.7 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 python3-flufl.lock all 5.0.1-4 [16.2 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 python3-hdmedians amd64 0.14.2-5+b1 [100 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 python3-ijson amd64 3.2.0-1 [37.5 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 python3-jedi all 0.18.2-1 [689 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get:231 http://deb.debian.org/debian bookworm/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 python3-pexpect all 4.8.0-4 [52.9 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get:234 http://deb.debian.org/debian bookworm/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1 [21.4 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 python3-prompt-toolkit all 3.0.36-2 [276 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 python3-pure-eval all 0.2.2-1 [11.2 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 python3-stack-data all 0.6.2-3 [21.8 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 python3-ipython all 8.5.0-4 [517 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 python3-lockfile all 1:0.12.2-2.2 [17.3 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 python3-pytz-deprecation-shim all 0.1.0.post0-3 [14.4 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 python3-skbio amd64 0.5.8-4 [727 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 python3-tzlocal all 4.2-1 [24.6 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.10-1 [2059 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 r-bioc-s4vectors amd64 0.36.1-1 [2026 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 r-bioc-iranges amd64 2.32.0-1 [2222 kB] Get:259 http://deb.debian.org/debian bookworm/main amd64 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get:260 http://deb.debian.org/debian bookworm/main amd64 r-bioc-xvector amd64 0.38.0-1 [618 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcurl amd64 1.98-1.10+dfsg-1 [783 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get:264 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biostrings amd64 2.66.0-1 [13.8 MB] Get:267 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.6.0-1 [1287 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.6-1 [1618 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 r-cran-mass amd64 7.3-58.2-1 [1121 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 r-cran-nlme amd64 3.1.162-1 [2260 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.5-3-1 [3822 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 r-cran-mgcv amd64 1.8-41-1 [3171 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 r-cran-farver amd64 2.1.1-1 [1404 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1692 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 r-cran-viridislite all 0.4.1-1 [1299 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 r-cran-scales all 1.2.1-1 [614 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 r-cran-fansi amd64 1.0.4-1 [619 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 r-cran-utf8 amd64 1.2.3-1 [133 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.5.2-1 [1371 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 r-cran-tibble amd64 3.1.8+dfsg-1 [513 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 r-cran-withr all 2.5.0-1 [236 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 r-cran-plyr amd64 1.8.8-1 [832 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringi amd64 1.7.12-1 [858 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringr all 1.5.0-1 [295 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 r-cran-formatr all 1.14-1 [152 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 r-cran-bh all 1.74.0-2 [5524 B] Get:306 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.3-1 [223 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocparallel amd64 1.32.5-1 [1337 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicranges amd64 1.50.2+dfsg-1 [1796 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rhtslib amd64 2.0.0+dfsg-1 [1287 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rsamtools amd64 2.14.0-1 [3755 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixstats amd64 0.63.0-1 [470 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biobase amd64 2.58.0-2 [2112 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 r-bioc-delayedarray amd64 0.24.0+dfsg-1 [1937 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicalignments amd64 1.34.0-1 [2112 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 r-cran-hwriter all 1.3.2.1-1 [110 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 r-cran-png amd64 0.1-8-1 [41.1 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 r-cran-jpeg amd64 0.1-10-1 [30.8 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 r-cran-deldir amd64 1.0-6-1+b1 [277 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcppeigen amd64 0.3.3.9.3-1 [1191 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 r-cran-interp amd64 1.1-3-1 [1016 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 r-cran-latticeextra all 0.6-30-1 [2194 kB] Get:324 http://deb.debian.org/debian bookworm/main amd64 r-bioc-shortread amd64 1.56.1-1 [5163 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcppparallel amd64 5.1.6+dfsg-1 [304 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 r-bioc-dada2 amd64 1.26.0+dfsg-1 [2786 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 r-cran-getopt all 1.20.3-3 [35.8 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 r-cran-optparse all 1.7.3-1 [82.0 kB] Get:329 http://deb.debian.org/debian bookworm/main amd64 qiime all 2022.11.1-2 [183 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 q2-types all 2022.11.1-2 [78.2 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 q2-dada2 amd64 2022.11.2-2 [1813 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 329 MB in 3s (130 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6101 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libssl3:amd64 (3.0.11-1~deb12u2) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6429 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../02-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../08-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../09-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../10-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../11-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../12-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../13-libsqlite3-0_3.40.1-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.1-2) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../14-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../15-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../16-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6937 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.11-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.11-1~deb12u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../005-binutils-common_2.40-2_amd64.deb ... Unpacking binutils-common:amd64 (2.40-2) ... Selecting previously unselected package libbinutils:amd64. Preparing to unpack .../006-libbinutils_2.40-2_amd64.deb ... Unpacking libbinutils:amd64 (2.40-2) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../007-libctf-nobfd0_2.40-2_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.40-2) ... Selecting previously unselected package libctf0:amd64. Preparing to unpack .../008-libctf0_2.40-2_amd64.deb ... 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Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libtbbbind-2-5:amd64 (2021.8.0-2) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u5) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libtbb12:amd64 (2021.8.0-2) ... Setting up binutils (2.40-2) ... Setting up libpaper-utils (1.1.29) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libtbb-dev:amd64 (2021.8.0-2) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up gcc (4:12.2.0-3) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-gtable (0.3.1+dfsg-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.162-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up r-cran-formatr (1.14-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up libc6-dev:amd64 (2.36-9+deb12u4) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up r-cran-jpeg (0.1-10-1) ... Setting up r-cran-rcppparallel (5.1.6+dfsg-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.9-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up r-cran-rcpp (1.0.10-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up python3.11 (3.11.2-6) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-rlang (1.0.6-1) ... Setting up r-cran-matrixstats (0.63.0-1) ... Setting up littler (0.3.17-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up r-bioc-matrixgenerics (1.10.0-1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up r-cran-withr (2.5.0-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-58.2-1) ... Setting up python3 (3.11.2-1+b1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-cli (3.6.0-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-natsort (8.0.2-2) ... Setting up r-cran-deldir (1.0-6-1+b1) ... Setting up r-cran-png (0.1-8-1) ... Setting up python3-six (1.16.0-4) ... Setting up r-bioc-biobase (2.58.0-2) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-getopt (1.20.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up python3-packaging (23.0-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up r-cran-stringi (1.7.12-1) ... Setting up python3-wcwidth (0.2.5+dfsg1-1.1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up r-cran-hwriter (1.3.2.1-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up r-cran-plyr (1.8.8-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up python3-dill (0.3.6-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up r-bioc-s4vectors (0.36.1-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up r-cran-mgcv (1.8-41-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-msgpack (1.0.3-2+b1) ... Setting up r-bioc-iranges (2.32.0-1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up r-cran-optparse (1.7.3-1) ... Setting up r-cran-vctrs (0.5.2-1) ... Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ... Setting up r-cran-rcppeigen (0.3.3.9.3-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up g++-12 (12.2.0-14) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-prompt-toolkit (3.0.36-2) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-ijson (3.2.0-1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-public (2.3-4) ... Setting up python3-asttokens (2.2.1-1) ... Setting up python3-pytz-deprecation-shim (0.1.0.post0-3) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-ply (3.11-5) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-click (8.1.3-2) ... Setting up python3-networkx (2.8.8-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-flufl.lock (5.0.1-4) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up r-cran-interp (1.1-3-1) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up r-bioc-genomeinfodb (1.34.9-1) ... Setting up python3-executing (1.2.0-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-hdmedians (0.14.2-5+b1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-cachecontrol (0.12.12-2) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-tzlocal (4.2-1) ... Setting up python3-stack-data (0.6.2-3) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up r-bioc-biocparallel (1.32.5-1) ... Setting up python3-jedi (0.18.2-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ... Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up r-bioc-biostrings (2.66.0-1) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up r-cran-latticeextra (0.6-30-1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-ipython (8.5.0-4) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-h5py (3.7.0-8) ... Setting up r-bioc-rsamtools (2.14.0-1) ... Setting up python3-bibtexparser (1.1.0+ds-5) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up qiime (2022.11.1-2) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up r-bioc-genomicalignments (1.34.0-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-biom-format (2.1.12-3+b1) ... Setting up r-bioc-shortread (1.56.1-1) ... Setting up r-bioc-dada2 (1.26.0+dfsg-1) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-skbio (0.5.8-4) ... Setting up q2-types (2022.11.1-2) ... Setting up q2-dada2 (2022.11.2-2) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', '-y', 'install', 'q2-dada2=2022.11.2-2'] 1m51.5s INFO: Running scripts post_install 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_install_exceptions'] 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_install_exceptions'] 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_install_log_alternatives'] 1m51.5s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=xdg-utils: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/bin/open open /usr/bin/xdg-open 50 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/xdg-open.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=libopenblas0-pthread: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 100 LOG-ALTERNATIVES: dpkg=libopenblas0-pthread: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 100 LOG-ALTERNATIVES: dpkg=libopenblas0-pthread: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libopenblas.so.0 libopenblas.so.0-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 100 LOG-ALTERNATIVES: dpkg=cpp: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --quiet --install /lib/cpp cpp /usr/bin/cpp 10 LOG-ALTERNATIVES: dpkg=libopenblas-pthread-dev: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so libblas.so-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so 100 --slave /usr/lib/x86_64-linux-gnu/libblas.a libblas.a-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.a --slave /usr/include/x86_64-linux-gnu/cblas.h cblas.h-x86_64-linux-gnu /usr/include/x86_64-linux-gnu/openblas-pthread/cblas.h --slave /usr/lib/x86_64-linux-gnu/pkgconfig/blas.pc blas.pc-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/pkgconfig/blas-openblas.pc LOG-ALTERNATIVES: dpkg=libopenblas-pthread-dev: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so liblapack.so-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so 100 --slave /usr/lib/x86_64-linux-gnu/liblapack.a liblapack.a-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.a --slave /usr/lib/x86_64-linux-gnu/pkgconfig/lapack.pc lapack.pc-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/pkgconfig/lapack-openblas.pc LOG-ALTERNATIVES: dpkg=libopenblas-pthread-dev: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libopenblas.so libopenblas.so-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so 100 --slave /usr/lib/x86_64-linux-gnu/libopenblas.a libopenblas.a-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.a --slave /usr/include/x86_64-linux-gnu/cblas-openblas.h cblas-openblas.h-x86_64-linux-gnu /usr/include/x86_64-linux-gnu/openblas-pthread/cblas.h --slave /usr/include/x86_64-linux-gnu/f77blas.h f77blas.h-x86_64-linux-gnu /usr/include/x86_64-linux-gnu/openblas-pthread/f77blas.h --slave /usr/include/x86_64-linux-gnu/openblas_config.h openblas_config.h-x86_64-linux-gnu /usr/include/x86_64-linux-gnu/openblas-pthread/openblas_config.h --slave /usr/lib/x86_64-linux-gnu/pkgconfig/openblas.pc openblas.pc-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/pkgconfig/openblas.pc --slave /usr/lib/x86_64-linux-gnu/cmake/openblas/OpenBLASConfig.cmake OpenBLASConfig.cmake-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/cmake/openblas/OpenBLASConfig.cmake --slave /usr/lib/x86_64-linux-gnu/cmake/openblas/OpenBLASConfigVersion.cmake OpenBLASConfigVersion.cmake-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/openblas-pthread/cmake/openblas/OpenBLASConfigVersion.cmake LOG-ALTERNATIVES: dpkg=gcc: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --quiet --install /usr/bin/cc cc /usr/bin/gcc 20 LOG-ALTERNATIVES: dpkg=gcc: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --quiet --install /usr/bin/c89 c89 /usr/bin/c89-gcc 20 --slave /usr/share/man/man1/c89.1.gz c89.1.gz /usr/share/man/man1/c89-gcc.1.gz LOG-ALTERNATIVES: dpkg=gcc: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --quiet --install /usr/bin/c99 c99 /usr/bin/c99-gcc 20 --slave /usr/share/man/man1/c99.1.gz c99.1.gz /usr/share/man/man1/c99-gcc.1.gz LOG-ALTERNATIVES: dpkg=g++: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/bin/c++ c++ /usr/bin/g++ 20 LOG-ALTERNATIVES: dpkg=python3-future: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/bin/futurize futurize /usr/bin/python3-futurize 300 LOG-ALTERNATIVES: dpkg=python3-future: piuparts=q2-dada2=2022.11.2-2: /usr/bin/update-alternatives --install /usr/bin/pasteurize pasteurize /usr/bin/python3-pasteurize 300 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_install_log_alternatives'] 1m51.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 1m54.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 2m2.9s DEBUG: No broken symlinks as far as we can find. 2m3.0s INFO: /bin converted to /usr/bin by /usr merge 2m3.0s INFO: /lib converted to /usr/lib by /usr merge 2m3.0s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m3.0s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m3.0s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m3.0s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m3.0s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m3.0s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 2m3.0s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 2m3.0s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 2m3.0s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 2m3.0s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 2m3.0s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 2m3.0s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 2m3.0s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 2m3.0s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 2m3.0s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 2m3.0s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 2m3.0s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 2m3.0s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 2m3.0s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 2m3.0s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 2m3.0s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m3.0s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m3.0s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m3.0s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m3.0s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m3.0s INFO: /sbin converted to /usr/sbin by /usr merge 2m6.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', '-ac', '--ignore-obsolete'] 2m12.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', '-ac', '--ignore-obsolete'] 2m12.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m12.6s DUMP: 0.15.6 2m12.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m12.6s INFO: Running adequate version 0.15.6 now. 2m12.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'q2-dada2'] 2m12.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'q2-dada2'] 2m12.7s INFO: Running scripts pre_remove 2m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_exceptions'] 2m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/pre_remove_exceptions'] 2m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m23.2s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u5 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b2 install ok installed binutils binutils 2.40-2 install ok installed binutils-common:amd64 binutils-common 2.40-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.40-2 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.38.1-5+b1 install ok installed ca-certificates ca-certificates 20230311 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-3 install ok installed cpp-12 cpp-12 12.2.0-14 install ok installed cython3 cython3 0.29.32-2+b1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig fontconfig 2.14.1-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-6 install ok installed fonts-lyx fonts-lyx 2.3.7-1 install ok installed g++ g++ 4:12.2.0-3 install ok installed g++-12 g++-12 12.2.0-14 install ok installed gcc gcc 4:12.2.0-3 install ok installed gcc-12 gcc-12 12.2.0-14 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libaec0:amd64 libaec0 1.0.6-1+b1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libasan8:amd64 libasan8 12.2.0-14 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libbinutils:amd64 libbinutils 2.40-2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+b1 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-21 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u4 install ok installed libc-dev-bin libc-dev-bin 2.36-9+deb12u4 install ok installed libc6:amd64 libc6 2.36-9+deb12u4 install ok installed libc6-dev:amd64 libc6-dev 2.36-9+deb12u4 install ok installed libcairo2:amd64 libcairo2 1.16.0-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-14 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.40-2 install ok installed libctf0:amd64 libctf0 2.40-2 install ok installed libcurl4:amd64 libcurl4 7.88.1-10+deb12u5 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-14 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u2 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.40-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.8+repack1-1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.8+repack1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhwloc15:amd64 libhwloc15 2.9.0-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1.1 install ok installed libitm1:amd64 libitm1 12.2.0-14 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u1 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblsan0:amd64 liblsan0 12.2.0-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzf1:amd64 liblzf1 3.6-3 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+b1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.12+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.12+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.12+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.2-1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11:amd64 libpython3.11 3.11.2-6 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.2-6 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-5 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.7.0-4.1 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b3 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.11-1~deb12u2 install ok installed libssw0:amd64 libssw0 1.1-13 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-14 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.22-1~deb12u1 install ok installed libsz2:amd64 libsz2 1.0.6-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtbb-dev:amd64 libtbb-dev 2021.8.0-2 install ok installed libtbb12:amd64 libtbb12 2021.8.0-2 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2021.8.0-2 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2021.8.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libtsan2:amd64 libtsan2 12.2.0-14 install ok installed libubsan1:amd64 libubsan1 12.2.0-14 install ok installed libudev1:amd64 libudev1 252.22-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+b1 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.4-0.2+deb12u1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.4-0.2+deb12u1 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyajl2:amd64 libyajl2 2.1.0-3+deb12u2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.1.76-1 install ok installed littler littler 0.3.17-1 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mount mount 2.38.1-5+b1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed openssl openssl 3.0.11-1~deb12u2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-all python3-all 3.11.2-1+b1 install ok installed python3-all-dev python3-all-dev 3.11.2-1+b1 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-asttokens python3-asttokens 2.2.1-1 install ok installed python3-attr python3-attr 22.2.0-1 install ok installed python3-backcall python3-backcall 0.2.0-4 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-bibtexparser python3-bibtexparser 1.1.0+ds-5 install ok installed python3-biom-format python3-biom-format 2.1.12-3+b1 install ok installed python3-brotli python3-brotli 1.0.9-2+b6 install ok installed python3-cachecontrol python3-cachecontrol 0.12.12-2 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.0.1-2 install ok installed python3-click python3-click 8.1.3-2 install ok installed python3-colorama python3-colorama 0.4.6-2 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b1 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-2 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.11.2-1+b1 install ok installed python3-dill python3-dill 0.3.6-1 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-executing python3-executing 1.2.0-2 install ok installed python3-flufl.lock python3-flufl.lock 5.0.1-4 install ok installed python3-fonttools python3-fonttools 4.38.0-1+b1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-future python3-future 0.18.2-6 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-h5py python3-h5py 3.7.0-8 install ok installed python3-h5py-serial python3-h5py-serial 3.7.0-8 install ok installed python3-hdmedians python3-hdmedians 0.14.2-5+b1 install ok installed python3-idna python3-idna 3.3-1 install ok installed python3-ijson python3-ijson 3.2.0-1 install ok installed python3-ipython python3-ipython 8.5.0-4 install ok installed python3-jedi python3-jedi 0.18.2-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2.2 install ok installed python3-lxml:amd64 python3-lxml 4.9.2-1+b1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b2 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b1 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.6-2 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-msgpack python3-msgpack 1.0.3-2+b1 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-numpy python3-numpy 1:1.24.2-1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-2 install ok installed python3-parso python3-parso 0.8.3-1 install ok installed python3-pexpect python3-pexpect 4.8.0-4 install ok installed python3-pickleshare python3-pickleshare 0.7.5-5 install ok installed python3-pil:amd64 python3-pil 9.4.0-1.1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 9.4.0-1.1+b1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.36-2 install ok installed python3-psutil python3-psutil 5.9.4-1+b1 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-5 install ok installed python3-public python3-public 2.3-4 install ok installed python3-pure-eval python3-pure-eval 0.2.2-1 install ok installed python3-pygments python3-pygments 2.14.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-pytz-deprecation-shim python3-pytz-deprecation-shim 0.1.0.post0-3 install ok installed python3-requests python3-requests 2.28.1+dfsg-1 install ok installed python3-scipy python3-scipy 1.10.1-2 install ok installed python3-setuptools python3-setuptools 66.1.1-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-skbio python3-skbio 0.5.8-4 install ok installed python3-stack-data python3-stack-data 0.6.2-3 install ok installed python3-sympy python3-sympy 1.11.1-1 install ok installed python3-tk:amd64 python3-tk 3.11.2-3 install ok installed python3-traitlets python3-traitlets 5.5.0-1 install ok installed python3-tz python3-tz 2022.7.1-4 install ok installed python3-tzlocal python3-tzlocal 4.2-1 install ok installed python3-ufolib2 python3-ufolib2 0.14.0+dfsg1-1 install ok installed python3-urllib3 python3-urllib3 1.26.12-1 install ok installed python3-wcwidth python3-wcwidth 0.2.5+dfsg1-1.1 install ok installed python3-yaml python3-yaml 6.0-3+b2 install ok installed python3.11 python3.11 3.11.2-6 install ok installed python3.11-dev python3.11-dev 3.11.2-6 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6 install ok installed q2-dada2 q2-dada2 2022.11.2-2 install ok installed q2-types q2-types 2022.11.1-2 install ok installed qiime qiime 2022.11.1-2 install ok installed r-base-core r-base-core 4.2.2.20221110-2 install ok installed r-bioc-biobase r-bioc-biobase 2.58.0-2 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.44.0-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.32.5-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.66.0-1 install ok installed r-bioc-dada2 r-bioc-dada2 1.26.0+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.24.0+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.34.9-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.9-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.34.0-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.50.2+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.32.0-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.10.0-1 install ok installed r-bioc-rhtslib r-bioc-rhtslib 2.0.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.14.0-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.36.1-1 install ok installed r-bioc-shortread r-bioc-shortread 1.56.1-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.28.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.38.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.44.0+dfsg-1 install ok installed r-cran-bh r-cran-bh 1.74.0-2 install ok installed r-cran-bitops r-cran-bitops 1.0-7-1 install ok installed r-cran-cli r-cran-cli 3.6.0-1 install ok installed r-cran-codetools r-cran-codetools 0.2-19-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-0+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.4.3-1 install ok installed r-cran-crayon r-cran-crayon 1.5.2-1 install ok installed r-cran-deldir r-cran-deldir 1.0-6-1+b1 install ok installed r-cran-fansi r-cran-fansi 1.0.4-1 install ok installed r-cran-farver r-cran-farver 2.1.1-1 install ok installed r-cran-formatr r-cran-formatr 1.14-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-getopt r-cran-getopt 1.20.3-3 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.4.1+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.6.2-1 install ok installed r-cran-gtable r-cran-gtable 0.3.1+dfsg-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2.1-1 install ok installed r-cran-interp r-cran-interp 1.1-3-1 install ok installed r-cran-isoband r-cran-isoband 0.2.7-1 install ok installed r-cran-jpeg r-cran-jpeg 0.1-10-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-lattice r-cran-lattice 0.20-45-3 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-30-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.3+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.17-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-58.2-1 install ok installed r-cran-matrix r-cran-matrix 1.5-3-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.63.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-41-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.162-1 install ok installed r-cran-optparse r-cran-optparse 1.7.3-1 install ok installed r-cran-pillar r-cran-pillar 1.8.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.2-2 install ok installed r-cran-plyr r-cran-plyr 1.8.8-1 install ok installed r-cran-png r-cran-png 0.1-8-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.10-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.3.9.3-1 install ok installed r-cran-rcppparallel r-cran-rcppparallel 5.1.6+dfsg-1 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.10+dfsg-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 1.0.6-1 install ok installed r-cran-scales r-cran-scales 1.2.1-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-stringi r-cran-stringi 1.7.12-1 install ok installed r-cran-stringr r-cran-stringr 1.5.0-1 install ok installed r-cran-tibble r-cran-tibble 3.1.8+dfsg-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.3-1 install ok installed r-cran-vctrs r-cran-vctrs 0.5.2-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.1-1 install ok installed r-cran-withr r-cran-withr 2.5.0-1 install ok installed readline-common readline-common 8.2-1.3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.0.0-1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+b1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+b1 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 2m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw0:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-beniget', 'python3-bibtexparser', 'python3-biom-format', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-jedi', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-pygments', 'python3-pyparsing', 'python3-pythran', 'python3-pytz-deprecation-shim', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 2m39.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdatrie1 libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libfribidi0 libgcc-12-dev libgfortran5 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwloc15 libice6 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl3 libssw0 libstdc++-12-dev libsz2 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler media-types openssl python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-asttokens python3-attr python3-backcall python3-beniget python3-bibtexparser python3-biom-format python3-brotli python3-cachecontrol python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-executing python3-flufl.lock python3-fonttools python3-fs python3-future python3-gast python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-jedi python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-natsort python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-prompt-toolkit python3-psutil python3-ptyprocess python3-public python3-pure-eval python3-pygments python3-pyparsing python3-pythran python3-pytz-deprecation-shim python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-stack-data python3-sympy python3-tk python3-traitlets python3-tz python3-tzlocal python3-ufolib2 python3-urllib3 python3-wcwidth python3-yaml python3.11 python3.11-dev python3.11-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-deldir r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common rpcsvc-proto sensible-utils tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 331 to remove and 0 not upgraded. After this operation, 1201 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54332 files and directories currently installed.) Removing q2-dada2 (2022.11.2-2) ... Removing q2-types (2022.11.1-2) ... Removing python3-skbio (0.5.8-4) ... Removing python3-biom-format (2.1.12-3+b1) ... Removing g++ (4:12.2.0-3) ... Removing gcc (4:12.2.0-3) ... Removing python3-matplotlib (3.6.3-1+b1) ... Removing python3-cachecontrol (0.12.12-2) ... Removing python3-requests (2.28.1+dfsg-1) ... Removing r-bioc-dada2 (1.26.0+dfsg-1) ... Removing r-bioc-shortread (1.56.1-1) ... Removing r-cran-latticeextra (0.6-30-1) ... Removing r-cran-interp (1.1-3-1) ... Removing r-cran-rcppeigen (0.3.3.9.3-1) ... Removing cpp (4:12.2.0-3) ... Removing python3-hdmedians (0.14.2-5+b1) ... Removing cython3 (0.29.32-2+b1) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-lyx (2.3.7-1) ... Removing python3-h5py (3.7.0-8) ... Removing python3-h5py-serial (3.7.0-8) ... Removing libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Removing libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Removing libsz2:amd64 (1.0.6-1+b1) ... Removing libaec0:amd64 (1.0.6-1+b1) ... Removing qiime (2022.11.1-2) ... Removing python3-pandas (1.5.3+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Removing python3-contourpy (1.0.7-1+b1) ... Removing r-cran-ggplot2 (3.4.1+dfsg-1) ... Removing r-cran-mgcv (1.8-41-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing r-bioc-genomicalignments (1.34.0-1) ... Removing r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Removing r-bioc-rsamtools (2.14.0-1) ... Removing r-bioc-biostrings (2.66.0-1) ... Removing r-bioc-rhtslib (2.0.0+dfsg-1) ... Removing python3-ipython (8.5.0-4) ... Removing python3-setuptools (66.1.1-1) ... Removing python3-yaml (6.0-3+b2) ... Removing python3-prompt-toolkit (3.0.36-2) ... Removing python3-wcwidth (0.2.5+dfsg1-1.1) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing r-cran-rcppparallel (5.1.6+dfsg-1) ... Removing libtbb-dev:amd64 (2021.8.0-2) ... Removing libtbb12:amd64 (2021.8.0-2) ... Removing libtbbbind-2-5:amd64 (2021.8.0-2) ... Removing libhwloc15:amd64 (2.9.0-1) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-stringr (1.5.0-1) ... Removing r-cran-stringi (1.7.12-1) ... Removing r-cran-jpeg (0.1-10-1) ... Removing python3-flufl.lock (5.0.1-4) ... Removing python3-public (2.3-4) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing liblzf1:amd64 (3.6-3) ... Removing r-cran-png (0.1-8-1) ... Removing libqhull-r8.0:amd64 (2020.2-5) ... Removing libssw0:amd64 (1.1-13) ... Removing libtbbmalloc2:amd64 (2021.8.0-2) ... Removing python3-ijson (3.2.0-1) ... Removing libyajl2:amd64 (2.1.0-3+deb12u2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing r-cran-plyr (1.8.8-1) ... Removing r-cran-rcpp (1.0.10-1) ... Removing littler (0.3.17-1) ... Removing python3-stack-data (0.6.2-3) ... Removing python3-executing (1.2.0-2) ... Removing python3-asttokens (2.2.1-1) ... Removing python3-backcall (0.2.0-4) ... Removing python3-bibtexparser (1.1.0+ds-5) ... Removing python3-certifi (2022.9.24-1) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-charset-normalizer (3.0.1-2) ... Removing python3-click (8.1.3-2) ... Removing python3-colorama (0.4.6-2) ... Removing python3-cycler (0.11.0-1) ... Removing python3-tzlocal (4.2-1) ... Removing python3-pytz-deprecation-shim (0.1.0.post0-3) ... Removing python3-dateutil (2.8.2-2) ... Removing python3-dill (0.3.6-1) ... Removing python3-future (0.18.2-6) ... Removing python3-idna (3.3-1) ... Removing python3-jedi (0.18.2-1) ... Removing python3-kiwisolver (1.4.4-1+b1) ... Removing python3-lockfile (1:0.12.2-2.2) ... Removing python3-matplotlib-inline (0.1.6-2) ... Removing python3-msgpack (1.0.3-2+b1) ... Removing python3-natsort (8.0.2-2) ... Removing python3-networkx (2.8.8-1) ... Removing python3-packaging (23.0-1) ... Removing python3-parso (0.8.3-1) ... Removing python3-pexpect (4.8.0-4) ... Removing python3-pickleshare (0.7.5-5) ... Removing python3-pygments (2.14.0+dfsg-1) ... Removing python3-psutil (5.9.4-1+b1) ... Removing python3-ptyprocess (0.7.0-5) ... Removing python3-pure-eval (0.2.2-1) ... Removing python3-pyparsing (3.0.9-1) ... Removing python3-urllib3 (1.26.12-1) ... Removing python3-traitlets (5.5.0-1) ... Removing r-bioc-biobase (2.58.0-2) ... Removing r-bioc-delayedarray (0.24.0+dfsg-1) ... Removing r-bioc-matrixgenerics (1.10.0-1) ... Removing r-cran-tibble (3.1.8+dfsg-1) ... Removing r-cran-pillar (1.8.1+dfsg-1) ... Removing r-cran-vctrs (0.5.2-1) ... Removing r-cran-scales (1.2.1-1) ... Removing r-cran-lifecycle (1.0.3+dfsg-1) ... Removing r-cran-cli (3.6.0-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.1-0+dfsg-1) ... Removing r-cran-crayon (1.5.2-1) ... Removing r-cran-deldir (1.0-6-1+b1) ... Removing r-cran-fansi (1.0.4-1) ... Removing r-cran-farver (2.1.1-1) ... Removing r-cran-optparse (1.7.3-1) ... Removing r-cran-getopt (1.20.3-3) ... Removing r-cran-glue (1.6.2-1) ... Removing r-cran-gtable (0.3.1+dfsg-1) ... Removing r-cran-hwriter (1.3.2.1-1) ... Removing r-cran-isoband (0.2.7-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-nlme (3.1.162-1) ... Removing r-cran-littler (0.3.17-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-58.2-1) ... Removing r-cran-matrixstats (0.63.0-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.2-2) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-rlang (1.0.6-1) ... Removing r-cran-utf8 (1.2.3-1) ... Removing r-cran-viridislite (0.4.1-1) ... Removing r-cran-withr (2.5.0-1) ... Removing r-bioc-biocparallel (1.32.5-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-cran-matrix (1.5-3-1) ... Removing r-cran-bh (1.74.0-2) ... Removing r-bioc-genomicranges (1.50.2+dfsg-1) ... Removing r-bioc-genomeinfodb (1.34.9-1) ... Removing r-cran-rcurl (1.98-1.10+dfsg-1) ... Removing r-bioc-xvector (0.38.0-1) ... Removing r-bioc-zlibbioc (1.44.0+dfsg-1) ... Removing r-bioc-iranges (2.32.0-1) ... Removing r-bioc-s4vectors (0.36.1-1) ... Removing r-bioc-biocgenerics (0.44.0-2) ... Removing r-bioc-genomeinfodbdata (1.2.9-1) ... Removing r-cran-bitops (1.0-7-1) ... Removing r-cran-codetools (0.2-19-1) ... Removing r-cran-cpp11 (0.4.3-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-1) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-lattice (0.20-45-3) ... Removing r-base-core (4.2.2.20221110-2) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.12+ds-1) ... Removing fontconfig (2.14.1-4) ... Removing libcairo2:amd64 (1.16.0-7) ... Removing libcurl4:amd64 (7.88.1-10+deb12u5) ... Removing libxt6:amd64 (1:1.2.1-1.1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing openssl (3.0.11-1~deb12u2) ... Removing libthai-data (0.1.29-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.17+nmu1) ... Removing unzip (6.0-28) ... Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-13) ... Removing python3-pil:amd64 (9.4.0-1.1+b1) ... Removing libraqm0:amd64 (0.7.0-4.1) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing python3-fonttools (4.38.0-1+b1) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libglib2.0-0:amd64 (2.74.6-2) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing python3-lxml:amd64 (4.9.2-1+b1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-brotli (1.0.9-2+b6) ... Removing python3-lz4 (4.0.2+dfsg-1+b2) ... Removing python3-sympy (1.11.1-1) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2022.7.1-4) ... Removing unicode-data (15.0.0-1) ... Removing python3-scipy (1.10.1-2) ... Removing python3-pythran (0.11.0+ds-7) ... Removing python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Removing python3-tk:amd64 (3.11.2-3) ... Removing blt (2.5.3+dfsg-4.1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing fonts-dejavu-core (2.37-6) ... Removing g++-12 (12.2.0-14) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Removing libstdc++-12-dev:amd64 (12.2.0-14) ... Removing python3-numpy (1:1.24.2-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-5) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing python3-all-dev (3.11.2-1+b1) ... Removing python3-dev (3.11.2-1+b1) ... Removing python3.11-dev (3.11.2-6) ... Removing python3-ufolib2 (0.14.0+dfsg1-1) ... Removing python3-all (3.11.2-1+b1) ... Removing python3-distutils (3.11.2-3) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libjs-sphinxdoc (5.3.0-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing libpython3-all-dev:amd64 (3.11.2-1+b1) ... Removing libpython3-dev:amd64 (3.11.2-1+b1) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing python3-attr (22.2.0-1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-ply (3.11-5) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing gcc-12 (12.2.0-14) ... Removing binutils (2.40-2) ... Removing binutils-x86-64-linux-gnu (2.40-2) ... Removing libgprofng0:amd64 (2.40-2) ... Removing libctf0:amd64 (2.40-2) ... Removing libbinutils:amd64 (2.40-2) ... Removing binutils-common:amd64 (2.40-2) ... Removing cpp-12 (12.2.0-14) ... Removing libgcc-12-dev:amd64 (12.2.0-14) ... Removing libasan8:amd64 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libpython3.11-dev:amd64 (3.11.2-6) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-9+deb12u4) ... Removing libc-dev-bin (2.36-9+deb12u4) ... Removing libcc1-0:amd64 (12.2.0-14) ... Removing libcrypt-dev:amd64 (1:4.4.33-2) ... Removing libctf-nobfd0:amd64 (2.40-2) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6) ... Removing libpython3.11:amd64 (3.11.2-6) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libisl23:amd64 (0.25-1.1) ... Removing libitm1:amd64 (12.2.0-14) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-14) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.11-minimal:amd64 (3.11.2-6) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libtsan2:amd64 (12.2.0-14) ... Removing libubsan1:amd64 (12.2.0-14) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing linux-libc-dev:amd64 (6.1.76-1) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Removing rpcsvc-proto (1.4.3-1) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Removing libssl3:amd64 (3.0.11-1~deb12u2) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... 2m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw0:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-beniget', 'python3-bibtexparser', 'python3-biom-format', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-jedi', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-pygments', 'python3-pyparsing', 'python3-pythran', 'python3-pytz-deprecation-shim', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 2m39.8s INFO: Running scripts post_remove 2m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_remove_exceptions'] 2m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_remove_exceptions'] 2m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw0:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-beniget', 'python3-bibtexparser', 'python3-biom-format', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-jedi', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-pygments', 'python3-pyparsing', 'python3-pythran', 'python3-pytz-deprecation-shim', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 2m40.6s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 6152 files and directories currently installed.) 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configuration files for libpaper1:amd64 (1.1.29) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed 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request to remove python3-stack-data which isn't installed Purging configuration files for python3-sympy (1.11.1-1) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6) ... dpkg: warning: ignoring request 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ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-interp which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-optparse which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppparallel which isn't installed dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libssw0:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'python-matplotlib-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-beniget', 'python3-bibtexparser', 'python3-biom-format', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-gast', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-jedi', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-pygments', 'python3-pyparsing', 'python3-pythran', 'python3-pytz-deprecation-shim', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-png', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 2m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--purge', 'q2-dada2'] 2m40.7s DUMP: dpkg: warning: ignoring request to remove q2-dada2 which isn't installed 2m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--purge', 'q2-dada2'] 2m40.7s INFO: Running scripts post_purge 2m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_purge_exceptions'] 2m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_purge_exceptions'] 2m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--purge', '--pending'] 2m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--purge', '--pending'] 2m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--remove', '--pending'] 2m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg', '--remove', '--pending'] 2m40.7s INFO: Running scripts post_test 2m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_test_exceptions'] 2m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'tmp/scripts/post_test_exceptions'] 2m40.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 2m41.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 2m42.1s DEBUG: No broken symlinks as far as we can find. 2m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-divert', '--list'] 2m42.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'dpkg-divert', '--list'] 2m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'clean'] 2m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe', 'apt-get', 'clean'] 2m42.2s DEBUG: Recording chroot state 2m43.0s INFO: PASS: Installation and purging test. 2m43.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/shm'] 2m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/shm'] 2m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/console'] 2m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/console'] 2m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/ptmx'] 2m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/ptmx'] 2m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/pts'] 2m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/dev/pts'] 2m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/proc'] 2m43.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe/proc'] 2m43.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 2m43.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg3ek3qfe'] 2m43.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpg3ek3qfe 2m43.7s INFO: PASS: All tests. 2m43.7s INFO: piuparts run ends. ret=0 End: 2024-03-03 00:03:00 GMT