Start: 2024-08-22 16:23:05 GMT [bookworm] Package: liballelecount-perl Source: allelecount Version: 4.3.0-2 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, libjson-perl Description: Perl interface to NGS copy number algorithms Homepage: https://github.com/cancerit/alleleCount Description-md5: 3643df2ba0a59c066ab75e82c8e21f1a Section: perl Priority: optional Filename: pool/main/a/allelecount/liballelecount-perl_4.3.0-2_all.deb Size: 25020 MD5sum: 7fca00320975ab41b29a9960f565a413 SHA256: 29f56c7ab093bc94845e899c3a9c9b05dee2ba5fd153801e3dea4f8818a2b0c5 [bookworm-next] Package: liballelecount-perl Source: allelecount Version: 4.3.0-2 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, libjson-perl Description: Perl interface to NGS copy number algorithms Homepage: https://github.com/cancerit/alleleCount Description-md5: 3643df2ba0a59c066ab75e82c8e21f1a Section: perl Priority: optional Filename: pool/main/a/allelecount/liballelecount-perl_4.3.0-2_all.deb Size: 25020 MD5sum: 7fca00320975ab41b29a9960f565a413 SHA256: 29f56c7ab093bc94845e899c3a9c9b05dee2ba5fd153801e3dea4f8818a2b0c5 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt liballelecount-perl=4.3.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201135~1.4.3-10-g39df1906 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt liballelecount-perl=4.3.0-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphq5v8xj5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphq5v8xj5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphq5v8xj5/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'update'] 0m1.9s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s INFO: Running scripts post_setup 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_dummy_users'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_forbid_home'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_minimize'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_setup_zz_backports'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'show', '--no-all-versions', 'liballelecount-perl'] 0m5.0s DUMP: Package: liballelecount-perl Source: allelecount Version: 4.3.0-2 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, libjson-perl Description-en: Perl interface to NGS copy number algorithms Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). . The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. . This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype. Description-md5: 3643df2ba0a59c066ab75e82c8e21f1a Homepage: https://github.com/cancerit/alleleCount Section: perl Priority: optional Filename: pool/main/a/allelecount/liballelecount-perl_4.3.0-2_all.deb Size: 25020 MD5sum: 7fca00320975ab41b29a9960f565a413 SHA256: 29f56c7ab093bc94845e899c3a9c9b05dee2ba5fd153801e3dea4f8818a2b0c5 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'show', '--no-all-versions', 'liballelecount-perl'] 0m5.0s INFO: apt-cache knows about the following packages: liballelecount-perl 0m5.0s INFO: Running scripts pre_install 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_extras'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy'] 0m5.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy', 'liballelecount-perl'] 0m5.1s DUMP: liballelecount-perl: Installed: (none) Candidate: 4.3.0-2 Version table: 4.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy', 'liballelecount-perl'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-y', 'install', 'liballelecount-perl'] 0m9.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libb-debug-perl libconst-fast-perl libdata-optlist-perl libdevel-cover-perl libdevel-symdump-perl libfile-slurp-perl libfile-which-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libipc-system-simple-perl libjson-perl libparams-util-perl libperl5.36 libpod-coverage-perl libpod-parser-perl libregexp-ipv6-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libtest-fatal-perl libtry-tiny-perl liburi-perl perl perl-modules-5.36 Suggested packages: libbrowser-open-perl libcapture-tiny-perl libclass-xsaccessor-perl libjson-maybexs-perl libmoo-perl libnamespace-clean-perl libppi-html-perl | perltidy libsereal-decoder-perl libsereal-encoder-perl libterm-size-perl libtest-differences-perl gdbm-l10n libdata-dump-perl sensible-utils libsub-name-perl libbusiness-isbn-perl libwww-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: gcc libtemplate-perl libhttp-message-perl libjson-xs-perl netbase The following NEW packages will be installed: liballelecount-perl libb-debug-perl libconst-fast-perl libdata-optlist-perl libdevel-cover-perl libdevel-symdump-perl libfile-slurp-perl libfile-which-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libipc-system-simple-perl libjson-perl libparams-util-perl libperl5.36 libpod-coverage-perl libpod-parser-perl libregexp-ipv6-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libtest-fatal-perl libtry-tiny-perl liburi-perl perl perl-modules-5.36 0 upgraded, 27 newly installed, 0 to remove and 0 not upgraded. Need to get 8269 kB of archives. After this operation, 51.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:12 http://deb.debian.org/debian bookworm/main amd64 libb-debug-perl all 1.26-3 [11.4 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:15 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libdevel-cover-perl amd64 1.38-1+b1 [194 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libfile-slurp-perl all 9999.32-2 [26.7 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libpod-parser-perl all 1.65-1 [96.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libpod-coverage-perl all 0.23-2 [22.1 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libtest-fatal-perl all 0.017-1 [13.2 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 liballelecount-perl all 4.3.0-2 [25.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8269 kB in 1s (6036 kB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Selecting previously unselected package libperl5.36:amd64. Preparing to unpack .../03-libperl5.36_5.36.0-7+deb12u1_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u1) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl (5.36.0-7+deb12u1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../05-libparams-util-perl_1.102-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../06-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../07-libdata-optlist-perl_0.113-1_all.deb ... Unpacking libdata-optlist-perl (0.113-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../08-libsub-exporter-perl_0.989-1_all.deb ... Unpacking libsub-exporter-perl (0.989-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../09-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../10-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libb-debug-perl. Preparing to unpack .../11-libb-debug-perl_1.26-3_all.deb ... Unpacking libb-debug-perl (1.26-3) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../12-libhtml-tagset-perl_3.20-6_all.deb ... Unpacking libhtml-tagset-perl (3.20-6) ... Selecting previously unselected package libregexp-ipv6-perl. Preparing to unpack .../13-libregexp-ipv6-perl_0.03-3_all.deb ... Unpacking libregexp-ipv6-perl (0.03-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../14-liburi-perl_5.17-1_all.deb ... Unpacking liburi-perl (5.17-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../15-libhtml-parser-perl_3.81-1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.81-1) ... Selecting previously unselected package libdevel-cover-perl. Preparing to unpack .../16-libdevel-cover-perl_1.38-1+b1_amd64.deb ... Unpacking libdevel-cover-perl (1.38-1+b1) ... Selecting previously unselected package libfile-slurp-perl. Preparing to unpack .../17-libfile-slurp-perl_9999.32-2_all.deb ... Unpacking libfile-slurp-perl (9999.32-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../18-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../19-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../20-libdevel-symdump-perl_2.18-5_all.deb ... Unpacking libdevel-symdump-perl (2.18-5) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../21-libpod-parser-perl_1.65-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.65-1) ... Selecting previously unselected package libpod-coverage-perl. Preparing to unpack .../22-libpod-coverage-perl_0.23-2_all.deb ... Unpacking libpod-coverage-perl (0.23-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../23-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libtest-fatal-perl. Preparing to unpack .../24-libtest-fatal-perl_0.017-1_all.deb ... Unpacking libtest-fatal-perl (0.017-1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../25-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package liballelecount-perl. Preparing to unpack .../26-liballelecount-perl_4.3.0-2_all.deb ... Unpacking liballelecount-perl (4.3.0-2) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libpod-parser-perl (1.65-1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libjson-perl (4.10000-1) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up liburi-perl (5.17-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libfile-slurp-perl (9999.32-2) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libpod-coverage-perl (0.23-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libtest-fatal-perl (0.017-1) ... Setting up libb-debug-perl (1.26-3) ... Setting up libsub-install-perl (0.929-1) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libdevel-cover-perl (1.38-1+b1) ... Setting up libconst-fast-perl (0.014-2) ... Setting up liballelecount-perl (4.3.0-2) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-y', 'install', 'liballelecount-perl'] 0m9.2s INFO: Running scripts post_install 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_install_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_install_exceptions'] 0m9.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m9.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmphq5v8xj5 to bookworm-next 0m9.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 0m9.7s INFO: Running scripts pre_distupgrade 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'update'] 0m11.8s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://security.debian.org bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:6 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [109 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [62.8 kB] Get:9 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:10 http://security.debian.org bookworm-security/main Translation-en [106 kB] Fetched 647 kB in 1s (537 kB/s) Reading package lists... 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'update'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-yf', 'dist-upgrade'] 0m14.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libsystemd0 libudev1 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3803 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:2 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:3 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3803 kB in 0s (8633 kB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8529 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.29-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8529 files and directories currently installed.) Preparing to unpack .../libudev1_252.29-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.29-1~deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-yf', 'dist-upgrade'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.8s DUMP: 0bdc56bc83ae6d8c6f994c42aef2be7c - 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'show', '--no-all-versions', 'liballelecount-perl'] 0m15.1s DUMP: Package: liballelecount-perl Source: allelecount Version: 4.3.0-2 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, libconst-fast-perl, libdevel-cover-perl, libfile-slurp-perl, libfile-which-perl, libipc-system-simple-perl, libpod-coverage-perl, libtest-fatal-perl, libtry-tiny-perl, libjson-perl Description-en: Perl interface to NGS copy number algorithms Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings). . The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg. . This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype. Description-md5: 3643df2ba0a59c066ab75e82c8e21f1a Homepage: https://github.com/cancerit/alleleCount Section: perl Priority: optional Filename: pool/main/a/allelecount/liballelecount-perl_4.3.0-2_all.deb Size: 25020 MD5sum: 7fca00320975ab41b29a9960f565a413 SHA256: 29f56c7ab093bc94845e899c3a9c9b05dee2ba5fd153801e3dea4f8818a2b0c5 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'show', '--no-all-versions', 'liballelecount-perl'] 0m15.1s INFO: apt-cache knows about the following packages: liballelecount-perl 0m15.1s INFO: Running scripts pre_install 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_database-server'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_database-server'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_exceptions'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_exceptions'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_extras'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_extras'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy'] 0m15.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy', 'liballelecount-perl'] 0m15.2s DUMP: liballelecount-perl: Installed: 4.3.0-2 Candidate: 4.3.0-2 Version table: *** 4.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy', 'liballelecount-perl'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-y', 'install', 'liballelecount-perl'] 0m15.8s DUMP: Reading package lists... Building dependency tree... Reading state information... liballelecount-perl is already the newest version (4.3.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-y', 'install', 'liballelecount-perl'] 0m15.8s INFO: Running scripts post_install 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_install_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_install_exceptions'] 0m15.8s INFO: Running scripts post_distupgrade 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m16.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m16.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m16.7s INFO: Running scripts pre_install 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_database-server'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_database-server'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_exceptions'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_exceptions'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_extras'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_extras'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy'] 0m16.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy', 'liballelecount-perl'] 0m16.8s DUMP: liballelecount-perl: Installed: 4.3.0-2 Candidate: 4.3.0-2 Version table: *** 4.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-cache', 'policy', 'liballelecount-perl'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-y', 'install', 'liballelecount-perl=4.3.0-2'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... liballelecount-perl is already the newest version (4.3.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', '-y', 'install', 'liballelecount-perl=4.3.0-2'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_install_exceptions'] 0m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m17.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m18.0s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m18.1s INFO: /bin converted to /usr/bin by /usr merge 0m18.1s INFO: /lib converted to /usr/lib by /usr merge 0m18.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m18.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m18.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m18.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m18.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m18.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m18.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m18.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m18.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m18.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m18.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m18.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m18.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m18.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m18.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m18.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m18.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m18.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m18.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m18.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m18.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m18.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m18.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m18.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m18.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m18.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m18.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', '-ac', '--ignore-obsolete'] 0m19.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', '-ac', '--ignore-obsolete'] 0m19.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.7s DUMP: 0.15.6 0m19.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.7s INFO: Running adequate version 0.15.6 now. 0m19.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'liballelecount-perl'] 0m19.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'liballelecount-perl'] 0m19.8s INFO: Running scripts pre_remove 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/pre_remove_exceptions'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.3s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed liballelecount-perl liballelecount-perl 4.3.0-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libb-debug-perl libb-debug-perl 1.26-3 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libconst-fast-perl libconst-fast-perl 0.014-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdata-optlist-perl libdata-optlist-perl 0.113-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdevel-cover-perl libdevel-cover-perl 1.38-1+b1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-5 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.32-2 install ok installed libfile-which-perl libfile-which-perl 1.27-2 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.81-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-6 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-2 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libparams-util-perl libparams-util-perl 1.102-2+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpod-coverage-perl libpod-coverage-perl 0.23-2 install ok installed libpod-parser-perl libpod-parser-perl 1.65-1 install ok installed libregexp-ipv6-perl libregexp-ipv6-perl 0.03-3 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsub-exporter-perl libsub-exporter-perl 0.989-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-3 install ok installed libsub-install-perl libsub-install-perl 0.929-1 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtest-fatal-perl libtest-fatal-perl 0.017-1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-2 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed liburi-perl liburi-perl 5.17-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'remove', 'libb-debug-perl', 'libconst-fast-perl', 'libdata-optlist-perl', 'libdevel-cover-perl', 'libdevel-symdump-perl', 'libfile-slurp-perl', 'libfile-which-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libipc-system-simple-perl', 'libjson-perl', 'libparams-util-perl', 'libperl5.36:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libregexp-ipv6-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libtest-fatal-perl', 'libtry-tiny-perl', 'liburi-perl', 'perl', 'perl-modules-5.36', 'liballelecount-perl'] 0m22.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: liballelecount-perl libb-debug-perl libconst-fast-perl libdata-optlist-perl libdevel-cover-perl libdevel-symdump-perl libfile-slurp-perl libfile-which-perl libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libipc-system-simple-perl libjson-perl libparams-util-perl libperl5.36 libpod-coverage-perl libpod-parser-perl libregexp-ipv6-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl libtest-fatal-perl libtry-tiny-perl liburi-perl perl perl-modules-5.36 0 upgraded, 0 newly installed, 27 to remove and 0 not upgraded. After this operation, 51.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8529 files and directories currently installed.) Removing liballelecount-perl (4.3.0-2) ... Removing libdevel-cover-perl (1.38-1+b1) ... Removing libb-debug-perl (1.26-3) ... Removing libconst-fast-perl (0.014-2) ... Removing libsub-exporter-perl (0.989-1) ... Removing libdata-optlist-perl (0.113-1) ... Removing libpod-coverage-perl (0.23-2) ... Removing libdevel-symdump-perl (2.18-5) ... Removing libfile-slurp-perl (9999.32-2) ... Removing libfile-which-perl (1.27-2) ... Removing libhtml-parser-perl:amd64 (3.81-1) ... Removing liburi-perl (5.17-1) ... Removing libregexp-ipv6-perl (0.03-3) ... Removing libtest-fatal-perl (0.017-1) ... Removing libtry-tiny-perl (0.31-2) ... Removing libparams-util-perl (1.102-2+b1) ... Removing libsub-install-perl (0.929-1) ... Removing libhtml-tagset-perl (3.20-6) ... Removing libipc-system-simple-perl (1.30-2) ... Removing libjson-perl (4.10000-1) ... Removing libpod-parser-perl (1.65-1) ... Removing 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Removing 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Removing libsub-exporter-progressive-perl (0.001013-3) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'remove', 'libb-debug-perl', 'libconst-fast-perl', 'libdata-optlist-perl', 'libdevel-cover-perl', 'libdevel-symdump-perl', 'libfile-slurp-perl', 'libfile-which-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libipc-system-simple-perl', 'libjson-perl', 'libparams-util-perl', 'libperl5.36:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libregexp-ipv6-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libtest-fatal-perl', 'libtry-tiny-perl', 'liburi-perl', 'perl', 'perl-modules-5.36', 'liballelecount-perl'] 0m22.4s INFO: Running scripts post_remove 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_remove_exceptions'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_remove_exceptions'] 0m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--purge', 'libb-debug-perl', 'libconst-fast-perl', 'libdata-optlist-perl', 'libdevel-cover-perl', 'libdevel-symdump-perl', 'libfile-slurp-perl', 'libfile-which-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libipc-system-simple-perl', 'libjson-perl', 'libparams-util-perl', 'libperl5.36:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libregexp-ipv6-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libtest-fatal-perl', 'libtry-tiny-perl', 'liburi-perl', 'perl', 'perl-modules-5.36'] 0m22.5s DUMP: dpkg: warning: ignoring request to remove libb-debug-perl which isn't installed dpkg: warning: ignoring request to remove libconst-fast-perl which isn't installed dpkg: warning: ignoring request to remove libdata-optlist-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-cover-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-which-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libparams-util-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpod-coverage-perl which isn't installed (Reading database ... 6096 files and directories currently installed.) Purging configuration files for libpod-parser-perl (1.65-1) ... dpkg: warning: ignoring request to remove libregexp-ipv6-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-install-perl which isn't installed dpkg: warning: ignoring request to remove libtest-fatal-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed Purging configuration files for perl (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--purge', 'libb-debug-perl', 'libconst-fast-perl', 'libdata-optlist-perl', 'libdevel-cover-perl', 'libdevel-symdump-perl', 'libfile-slurp-perl', 'libfile-which-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libipc-system-simple-perl', 'libjson-perl', 'libparams-util-perl', 'libperl5.36:amd64', 'libpod-coverage-perl', 'libpod-parser-perl', 'libregexp-ipv6-perl', 'libsub-exporter-perl', 'libsub-exporter-progressive-perl', 'libsub-install-perl', 'libtest-fatal-perl', 'libtry-tiny-perl', 'liburi-perl', 'perl', 'perl-modules-5.36'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--purge', 'liballelecount-perl'] 0m22.5s DUMP: dpkg: warning: ignoring request to remove liballelecount-perl which isn't installed 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--purge', 'liballelecount-perl'] 0m22.5s INFO: Running scripts post_purge 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_purge_exceptions'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_purge_exceptions'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--purge', '--pending'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--purge', '--pending'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--remove', '--pending'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg', '--remove', '--pending'] 0m22.5s INFO: Running scripts post_test 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_test_exceptions'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'tmp/scripts/post_test_exceptions'] 0m22.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m22.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg-divert', '--list'] 0m22.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'dpkg-divert', '--list'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'clean'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5', 'apt-get', 'clean'] 0m23.0s DEBUG: Recording chroot state 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/shm'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/shm'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/console'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/console'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/ptmx'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/ptmx'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/pts'] 0m23.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/dev/pts'] 0m23.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/proc'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5/proc'] 0m23.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m24.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphq5v8xj5'] 0m24.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphq5v8xj5 0m24.1s INFO: PASS: Upgrading between Debian distributions. 0m24.1s INFO: PASS: All tests. 0m24.1s INFO: piuparts run ends. ret=0 End: 2024-08-22 16:23:30 GMT