Start: 2024-08-23 10:11:07 GMT [bookworm] Package: libsbml5-cil Source: libsbml Version: 5.19.7+dfsg-2 Installed-Size: 13163 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-cil Depends: libbz2-1.0, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), libmono-corlib4.5-cil (>= 5.18.0.240), libsbml5-dev Description: System Biology Markup Language library - CLI bindings Homepage: http://www.sbml.org/ Description-md5: 6923ba76f814ada93ced1087327fce79 Section: cli-mono Priority: optional Filename: pool/main/libs/libsbml/libsbml5-cil_5.19.7+dfsg-2_amd64.deb Size: 2639016 MD5sum: b53a3182c488307885698d2443b3f005 SHA256: 930b57c6e57b5fb7f7d83a17d54d2a7e73357e9402502e9a8137b2cadaaf7802 [bookworm-next] Package: libsbml5-cil Source: libsbml Version: 5.19.7+dfsg-2 Installed-Size: 13163 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-cil Depends: libbz2-1.0, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), libmono-corlib4.5-cil (>= 5.18.0.240), libsbml5-dev Description: System Biology Markup Language library - CLI bindings Homepage: http://www.sbml.org/ Description-md5: 6923ba76f814ada93ced1087327fce79 Section: cli-mono Priority: optional Filename: pool/main/libs/libsbml/libsbml5-cil_5.19.7+dfsg-2_amd64.deb Size: 2639016 MD5sum: b53a3182c488307885698d2443b3f005 SHA256: 930b57c6e57b5fb7f7d83a17d54d2a7e73357e9402502e9a8137b2cadaaf7802 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt libsbml5-cil=5.19.7+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201135~1.4.3-10-g39df1906 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt libsbml5-cil=5.19.7+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpt8tw1ubj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpt8tw1ubj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpt8tw1ubj/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-cil'] 0m4.6s DUMP: Package: libsbml5-cil Source: libsbml Version: 5.19.7+dfsg-2 Installed-Size: 13163 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-cil Depends: libbz2-1.0, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), libmono-corlib4.5-cil (>= 5.18.0.240), libsbml5-dev Description-en: System Biology Markup Language library - CLI bindings LibSBML is a library designed to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with many example programs), but rather a library you can embed in your own applications. . This package contains the CLI bindings of LibSBML. Description-md5: 6923ba76f814ada93ced1087327fce79 Homepage: http://www.sbml.org/ Section: cli-mono Priority: optional Filename: pool/main/libs/libsbml/libsbml5-cil_5.19.7+dfsg-2_amd64.deb Size: 2639016 MD5sum: b53a3182c488307885698d2443b3f005 SHA256: 930b57c6e57b5fb7f7d83a17d54d2a7e73357e9402502e9a8137b2cadaaf7802 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-cil'] 0m4.6s INFO: apt-cache knows about the following packages: libsbml5-cil 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy'] 0m4.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy', 'libsbml5-cil'] 0m4.8s DUMP: libsbml5-cil: Installed: (none) Candidate: 5.19.7+dfsg-2 Version table: 5.19.7+dfsg-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy', 'libsbml5-cil'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-y', 'install', 'libsbml5-cil'] 0m22.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libctf-nobfd0 libctf0 libgprofng0 libgssapi-krb5-2 libicu72 libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmono-corlib4.5-cil libmono-corlib4.5-dll libmono-security4.0-cil libmono-system-configuration4.0-cil libmono-system-core4.0-cil libmono-system-numerics4.0-cil libmono-system-security4.0-cil libmono-system-xml4.0-cil libmono-system4.0-cil libsbml5 libsbml5-dev libssl3 libxml2 mono-4.0-gac mono-gac mono-runtime mono-runtime-common mono-runtime-sgen Suggested packages: binutils-doc krb5-doc krb5-user libmono-i18n4.0-all libasound2 libgamin0 xdg-utils | libgnome2-0 | konqueror Recommended packages: krb5-locales libmono-i18n-west4.0-cil ca-certificates-mono libmono-btls-interface4.0-cil cli-common binfmt-support The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libctf-nobfd0 libctf0 libgprofng0 libgssapi-krb5-2 libicu72 libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmono-corlib4.5-cil libmono-corlib4.5-dll libmono-security4.0-cil libmono-system-configuration4.0-cil libmono-system-core4.0-cil libmono-system-numerics4.0-cil libmono-system-security4.0-cil libmono-system-xml4.0-cil libmono-system4.0-cil libsbml5 libsbml5-cil libsbml5-dev libssl3 libxml2 mono-4.0-gac mono-gac mono-runtime mono-runtime-common mono-runtime-sgen 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After this operation, 161 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:4 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 mono-runtime-common amd64 6.8.0.105+dfsg-3.3 [1171 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 libmono-corlib4.5-dll all 6.8.0.105+dfsg-3.3 [1253 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libmono-system-core4.0-cil all 6.8.0.105+dfsg-3.3 [305 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libmono-system-numerics4.0-cil all 6.8.0.105+dfsg-3.3 [51.0 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libmono-system-xml4.0-cil all 6.8.0.105+dfsg-3.3 [818 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libmono-system-security4.0-cil all 6.8.0.105+dfsg-3.3 [116 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libmono-system-configuration4.0-cil all 6.8.0.105+dfsg-3.3 [57.2 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libmono-system4.0-cil all 6.8.0.105+dfsg-3.3 [805 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libmono-security4.0-cil all 6.8.0.105+dfsg-3.3 [97.5 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 mono-4.0-gac all 6.8.0.105+dfsg-3.3 [156 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 mono-gac all 6.8.0.105+dfsg-3.3 [21.2 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 mono-runtime-sgen amd64 6.8.0.105+dfsg-3.3 [1703 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 mono-runtime amd64 6.8.0.105+dfsg-3.3 [17.0 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libmono-corlib4.5-cil all 6.8.0.105+dfsg-3.3 [15.3 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libsbml5 amd64 5.19.7+dfsg-2 [2121 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libsbml5-dev amd64 5.19.7+dfsg-2 [3138 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libsbml5-cil amd64 5.19.7+dfsg-2 [2639 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.6 MB in 4s (8202 kB/s) Selecting previously unselected package libkrb5support0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../00-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../01-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. 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Preparing to unpack .../23-mono-4.0-gac_6.8.0.105+dfsg-3.3_all.deb ... Unpacking mono-4.0-gac (6.8.0.105+dfsg-3.3) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libssl3:amd64 (3.0.13-1~deb12u1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libctf0:amd64 (2.40-2) ... Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up binutils (2.40-2) ... Setting up mono-runtime-common (6.8.0.105+dfsg-3.3) ... Selecting previously unselected package mono-gac. (Reading database ... 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Preparing to unpack .../8-libsbml5-cil_5.19.7+dfsg-2_amd64.deb ... Unpacking libsbml5-cil (5.19.7+dfsg-2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up libmono-corlib4.5-dll (6.8.0.105+dfsg-3.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libmono-system-numerics4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up libsbml5:amd64 (5.19.7+dfsg-2) ... Setting up libsbml5-dev (5.19.7+dfsg-2) ... Setting up libmono-system-xml4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up libmono-system-core4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up libmono-system-security4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up libmono-system4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up libmono-system-configuration4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up libmono-security4.0-cil (6.8.0.105+dfsg-3.3) ... Setting up mono-4.0-gac (6.8.0.105+dfsg-3.3) ... Setting up mono-gac (6.8.0.105+dfsg-3.3) ... update-alternatives: using /usr/bin/gacutil to provide /usr/bin/cli-gacutil (global-assembly-cache-tool) in auto mode Setting up mono-runtime-sgen (6.8.0.105+dfsg-3.3) ... Setting up mono-runtime (6.8.0.105+dfsg-3.3) ... update-alternatives: using /usr/bin/mono to provide /usr/bin/cli (cli) in auto mode Setting up libmono-corlib4.5-cil (6.8.0.105+dfsg-3.3) ... Setting up libsbml5-cil (5.19.7+dfsg-2) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-y', 'install', 'libsbml5-cil'] 0m22.8s INFO: Running scripts post_install 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_install_exceptions'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_install_exceptions'] 0m22.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m23.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m23.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpt8tw1ubj to bookworm-next 0m23.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 0m23.1s INFO: Running scripts pre_distupgrade 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'update'] 0m25.1s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:4 http://security.debian.org bookworm-security InRelease [48.0 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:6 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [111 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [64.5 kB] Get:9 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:10 http://security.debian.org bookworm-security/main Translation-en [106 kB] Fetched 650 kB in 1s (692 kB/s) Reading package lists... 0m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'update'] 0m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-yf', 'dist-upgrade'] 0m27.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl3 libsystemd0 libudev1 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6404 kB of archives. After this operation, 18.4 kB of additional disk space will be used. Get:1 http://security.debian.org bookworm-security/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:2 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:3 http://security.debian.org bookworm-security/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:4 http://security.debian.org bookworm-security/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:5 http://security.debian.org bookworm-security/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:6 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libssl3 amd64 3.0.14-1~deb12u1 [2024 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6404 kB in 0s (74.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7200 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u8_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7200 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc-bin (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7200 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.29-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7200 files and directories currently installed.) Preparing to unpack .../libudev1_252.29-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7200 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../libssl3_3.0.14-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.14-1~deb12u1) over (3.0.13-1~deb12u1) ... Setting up libssl3:amd64 (3.0.14-1~deb12u1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-yf', 'dist-upgrade'] 0m27.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.1s DUMP: a7383adc5fdea12f93db4552c396e73a - 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-cil'] 0m28.4s DUMP: Package: libsbml5-cil Source: libsbml Version: 5.19.7+dfsg-2 Installed-Size: 13163 Maintainer: Debian Med Packaging Team Architecture: amd64 Provides: libsbml-cil Depends: libbz2-1.0, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4), libmono-corlib4.5-cil (>= 5.18.0.240), libsbml5-dev Description-en: System Biology Markup Language library - CLI bindings LibSBML is a library designed to help you read, write, manipulate, translate, and validate SBML files and data streams. It is not an application itself (though it does come with many example programs), but rather a library you can embed in your own applications. . This package contains the CLI bindings of LibSBML. Description-md5: 6923ba76f814ada93ced1087327fce79 Homepage: http://www.sbml.org/ Section: cli-mono Priority: optional Filename: pool/main/libs/libsbml/libsbml5-cil_5.19.7+dfsg-2_amd64.deb Size: 2639016 MD5sum: b53a3182c488307885698d2443b3f005 SHA256: 930b57c6e57b5fb7f7d83a17d54d2a7e73357e9402502e9a8137b2cadaaf7802 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'show', '--no-all-versions', 'libsbml5-cil'] 0m28.4s INFO: apt-cache knows about the following packages: libsbml5-cil 0m28.4s INFO: Running scripts pre_install 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_database-server'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_database-server'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_exceptions'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_exceptions'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_extras'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_extras'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy'] 0m28.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy', 'libsbml5-cil'] 0m28.6s DUMP: libsbml5-cil: Installed: 5.19.7+dfsg-2 Candidate: 5.19.7+dfsg-2 Version table: *** 5.19.7+dfsg-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy', 'libsbml5-cil'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-y', 'install', 'libsbml5-cil'] 0m29.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libsbml5-cil is already the newest version (5.19.7+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-y', 'install', 'libsbml5-cil'] 0m29.2s INFO: Running scripts post_install 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_install_exceptions'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_install_exceptions'] 0m29.2s INFO: Running scripts post_distupgrade 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_exceptions'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_exceptions'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m29.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m29.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m29.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m30.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m30.0s INFO: Running scripts pre_install 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_database-server'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_database-server'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_exceptions'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_exceptions'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_extras'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_extras'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy'] 0m30.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy', 'libsbml5-cil'] 0m30.1s DUMP: libsbml5-cil: Installed: 5.19.7+dfsg-2 Candidate: 5.19.7+dfsg-2 Version table: *** 5.19.7+dfsg-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-cache', 'policy', 'libsbml5-cil'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-y', 'install', 'libsbml5-cil=5.19.7+dfsg-2'] 0m30.6s DUMP: Reading package lists... Building dependency tree... Reading state information... libsbml5-cil is already the newest version (5.19.7+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', '-y', 'install', 'libsbml5-cil=5.19.7+dfsg-2'] 0m30.6s INFO: Running scripts post_install 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_install_exceptions'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_install_exceptions'] 0m30.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m31.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m31.1s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m31.1s INFO: /bin converted to /usr/bin by /usr merge 0m31.1s INFO: /lib converted to /usr/lib by /usr merge 0m31.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m31.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m31.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m31.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m31.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m31.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m31.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m31.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m31.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m31.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m31.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m31.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m31.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m31.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m31.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m31.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m31.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m31.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m31.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m31.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m31.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m31.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m31.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m31.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m31.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m31.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m31.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', '-ac', '--ignore-obsolete'] 0m32.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', '-ac', '--ignore-obsolete'] 0m32.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.7s DUMP: 0.15.6 0m32.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m32.7s INFO: Running adequate version 0.15.6 now. 0m32.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'libsbml5-cil'] 0m32.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'libsbml5-cil'] 0m32.8s INFO: Running scripts pre_remove 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_exceptions'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/pre_remove_exceptions'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.5s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed binutils binutils 2.40-2 install ok installed binutils-common:amd64 binutils-common 2.40-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.40-2 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libbinutils:amd64 libbinutils 2.40-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.40-2 install ok installed libctf0:amd64 libctf0 2.40-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.40-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmono-corlib4.5-cil libmono-corlib4.5-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-corlib4.5-dll libmono-corlib4.5-dll 6.8.0.105+dfsg-3.3 install ok installed libmono-security4.0-cil libmono-security4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-system-configuration4.0-cil libmono-system-configuration4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-system-core4.0-cil libmono-system-core4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-system-numerics4.0-cil libmono-system-numerics4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-system-security4.0-cil libmono-system-security4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-system-xml4.0-cil libmono-system-xml4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmono-system4.0-cil libmono-system4.0-cil 6.8.0.105+dfsg-3.3 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libsbml5:amd64 libsbml5 5.19.7+dfsg-2 install ok installed libsbml5-cil libsbml5-cil 5.19.7+dfsg-2 install ok installed libsbml5-dev libsbml5-dev 5.19.7+dfsg-2 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssl3:amd64 libssl3 3.0.14-1~deb12u1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mono-4.0-gac mono-4.0-gac 6.8.0.105+dfsg-3.3 install ok installed mono-gac mono-gac 6.8.0.105+dfsg-3.3 install ok installed mono-runtime mono-runtime 6.8.0.105+dfsg-3.3 install ok installed mono-runtime-common mono-runtime-common 6.8.0.105+dfsg-3.3 install ok installed mono-runtime-sgen mono-runtime-sgen 6.8.0.105+dfsg-3.3 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'libbinutils:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libmono-corlib4.5-cil', 'libmono-corlib4.5-dll', 'libmono-security4.0-cil', 'libmono-system-configuration4.0-cil', 'libmono-system-core4.0-cil', 'libmono-system-numerics4.0-cil', 'libmono-system-security4.0-cil', 'libmono-system-xml4.0-cil', 'libmono-system4.0-cil', 'libsbml5:amd64', 'libsbml5-dev', 'libssl3:amd64', 'libxml2:amd64', 'mono-4.0-gac', 'mono-gac', 'mono-runtime', 'mono-runtime-common', 'mono-runtime-sgen', 'libsbml5-cil'] 0m35.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libctf-nobfd0 libctf0 libgprofng0 libgssapi-krb5-2 libicu72 libjansson4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmono-corlib4.5-cil libmono-corlib4.5-dll libmono-security4.0-cil libmono-system-configuration4.0-cil libmono-system-core4.0-cil libmono-system-numerics4.0-cil libmono-system-security4.0-cil libmono-system-xml4.0-cil libmono-system4.0-cil libsbml5 libsbml5-cil libsbml5-dev libssl3 libxml2 mono-4.0-gac mono-gac mono-runtime mono-runtime-common mono-runtime-sgen 0 upgraded, 0 newly installed, 33 to remove and 0 not upgraded. After this operation, 161 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7200 files and directories currently installed.) Removing libsbml5-cil (5.19.7+dfsg-2) ... Removing libmono-corlib4.5-cil (6.8.0.105+dfsg-3.3) ... Removing mono-runtime (6.8.0.105+dfsg-3.3) ... Removing mono-runtime-sgen (6.8.0.105+dfsg-3.3) ... Removing mono-gac (6.8.0.105+dfsg-3.3) ... Removing mono-runtime-common (6.8.0.105+dfsg-3.3) ... Removing binutils (2.40-2) ... Removing binutils-x86-64-linux-gnu (2.40-2) ... Removing libgprofng0:amd64 (2.40-2) ... Removing libctf0:amd64 (2.40-2) ... Removing libbinutils:amd64 (2.40-2) ... Removing binutils-common:amd64 (2.40-2) ... Removing libctf-nobfd0:amd64 (2.40-2) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libsbml5-dev (5.19.7+dfsg-2) ... Removing libsbml5:amd64 (5.19.7+dfsg-2) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libjansson4:amd64 (2.14-2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing mono-4.0-gac (6.8.0.105+dfsg-3.3) ... Removing libssl3:amd64 (3.0.14-1~deb12u1) ... Removing libmono-system-security4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-system4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-security4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-system-core4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-system-numerics4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-system-xml4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-system-configuration4.0-cil (6.8.0.105+dfsg-3.3) ... Removing libmono-corlib4.5-dll (6.8.0.105+dfsg-3.3) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'libbinutils:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libmono-corlib4.5-cil', 'libmono-corlib4.5-dll', 'libmono-security4.0-cil', 'libmono-system-configuration4.0-cil', 'libmono-system-core4.0-cil', 'libmono-system-numerics4.0-cil', 'libmono-system-security4.0-cil', 'libmono-system-xml4.0-cil', 'libmono-system4.0-cil', 'libsbml5:amd64', 'libsbml5-dev', 'libssl3:amd64', 'libxml2:amd64', 'mono-4.0-gac', 'mono-gac', 'mono-runtime', 'mono-runtime-common', 'mono-runtime-sgen', 'libsbml5-cil'] 0m35.5s INFO: Running scripts post_remove 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_remove_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_remove_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'libbinutils:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libmono-corlib4.5-cil', 'libmono-corlib4.5-dll', 'libmono-security4.0-cil', 'libmono-system-configuration4.0-cil', 'libmono-system-core4.0-cil', 'libmono-system-numerics4.0-cil', 'libmono-system-security4.0-cil', 'libmono-system-xml4.0-cil', 'libmono-system4.0-cil', 'libsbml5:amd64', 'libsbml5-dev', 'libssl3:amd64', 'libxml2:amd64', 'mono-4.0-gac', 'mono-gac', 'mono-runtime', 'mono-runtime-common', 'mono-runtime-sgen'] 0m35.6s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 6118 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.40-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libmono-corlib4.5-cil which isn't installed dpkg: warning: ignoring request to remove libmono-corlib4.5-dll which isn't installed dpkg: warning: ignoring request to remove libmono-security4.0-cil which isn't installed dpkg: warning: ignoring request to remove libmono-system-configuration4.0-cil which isn't installed dpkg: warning: ignoring request to remove libmono-system-core4.0-cil which isn't installed dpkg: warning: ignoring request to remove libmono-system-numerics4.0-cil which isn't installed dpkg: warning: ignoring request to remove libmono-system-security4.0-cil which isn't installed dpkg: warning: ignoring request to remove libmono-system-xml4.0-cil which isn't installed dpkg: warning: ignoring request to remove libmono-system4.0-cil which isn't installed dpkg: warning: ignoring request to remove libsbml5 which isn't installed dpkg: warning: ignoring request to remove libsbml5-dev which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove mono-4.0-gac which isn't installed dpkg: warning: ignoring request to remove mono-gac which isn't installed dpkg: warning: ignoring request to remove mono-runtime which isn't installed Purging configuration files for mono-runtime-common (6.8.0.105+dfsg-3.3) ... dpkg: warning: ignoring request to remove mono-runtime-sgen which isn't installed 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'libbinutils:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libicu72:amd64', 'libjansson4:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libmono-corlib4.5-cil', 'libmono-corlib4.5-dll', 'libmono-security4.0-cil', 'libmono-system-configuration4.0-cil', 'libmono-system-core4.0-cil', 'libmono-system-numerics4.0-cil', 'libmono-system-security4.0-cil', 'libmono-system-xml4.0-cil', 'libmono-system4.0-cil', 'libsbml5:amd64', 'libsbml5-dev', 'libssl3:amd64', 'libxml2:amd64', 'mono-4.0-gac', 'mono-gac', 'mono-runtime', 'mono-runtime-common', 'mono-runtime-sgen'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--purge', 'libsbml5-cil'] 0m35.6s DUMP: dpkg: warning: ignoring request to remove libsbml5-cil which isn't installed 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--purge', 'libsbml5-cil'] 0m35.6s INFO: Running scripts post_purge 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_purge_exceptions'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_purge_exceptions'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--purge', '--pending'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--purge', '--pending'] 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--remove', '--pending'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg', '--remove', '--pending'] 0m35.6s INFO: Running scripts post_test 0m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_test_exceptions'] 0m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'tmp/scripts/post_test_exceptions'] 0m35.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m36.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg-divert', '--list'] 0m36.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'dpkg-divert', '--list'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'clean'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj', 'apt-get', 'clean'] 0m36.1s DEBUG: Recording chroot state 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/shm'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/shm'] 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/console'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/console'] 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/ptmx'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/ptmx'] 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/pts'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/dev/pts'] 0m37.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/proc'] 0m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj/proc'] 0m37.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m37.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpt8tw1ubj'] 0m37.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpt8tw1ubj 0m37.2s INFO: PASS: Upgrading between Debian distributions. 0m37.2s INFO: PASS: All tests. 0m37.2s INFO: piuparts run ends. ret=0 End: 2024-08-23 10:11:45 GMT