Start: 2024-08-23 06:46:32 GMT [bookworm] Package: mrbayes-mpi Source: mrbayes Version: 3.2.7a-6 Installed-Size: 1614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description: Bayesian Inference of Phylogeny - mpi version Homepage: http://mrbayes.csit.fsu.edu/ Description-md5: d4667b242cc8f99f098ff96397619072 Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-6_amd64.deb Size: 596764 MD5sum: 29fcd74aa451a4e00e794e7a6abeed91 SHA256: 8caab4ac53486ec48d68083c5f9c1a7c68178ac3de211d102d71a02de00b71c0 [bookworm-next] Package: mrbayes-mpi Source: mrbayes Version: 3.2.7a-6 Installed-Size: 1614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description: Bayesian Inference of Phylogeny - mpi version Homepage: http://mrbayes.csit.fsu.edu/ Description-md5: d4667b242cc8f99f098ff96397619072 Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-6_amd64.deb Size: 596764 MD5sum: 29fcd74aa451a4e00e794e7a6abeed91 SHA256: 8caab4ac53486ec48d68083c5f9c1a7c68178ac3de211d102d71a02de00b71c0 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt mrbayes-mpi=3.2.7a-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201135~1.4.3-10-g39df1906 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt mrbayes-mpi=3.2.7a-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbic6nmz8 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbic6nmz8 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbic6nmz8/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.8s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m4.6s DUMP: Package: mrbayes-mpi Source: mrbayes Version: 3.2.7a-6 Installed-Size: 1614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description-en: Bayesian Inference of Phylogeny - mpi version Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. . This package offers a binary compiled for parallel computation with MPI. Description-md5: d4667b242cc8f99f098ff96397619072 Homepage: http://mrbayes.csit.fsu.edu/ Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-6_amd64.deb Size: 596764 MD5sum: 29fcd74aa451a4e00e794e7a6abeed91 SHA256: 8caab4ac53486ec48d68083c5f9c1a7c68178ac3de211d102d71a02de00b71c0 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m4.6s INFO: apt-cache knows about the following packages: mrbayes-mpi 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_database-server'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_extras'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy'] 0m4.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m4.8s DUMP: mrbayes-mpi: Installed: (none) Candidate: 3.2.7a-6 Version table: 3.2.7a-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m27.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ibverbs-providers lib32gcc-s1 lib32stdc++6 libatomic1 libbsd0 libc6-i386 libcbor0.8 libclang-common-15-dev libclang-cpp15 libclc-15 libclc-15-dev libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libgssapi-krb5-2 libhmsbeagle1v5 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm15 libllvmspirvlib15 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnsl2 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libproc2-0 libpsm-infinipath1 libpsm2-2 librdmacm1 libreadline8 libsensors-config libsensors5 libssl3 libtirpc-common libtirpc3 libucx0 libwrap0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 mesa-opencl-icd mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-server openssh-sftp-server procps readline-common runit-helper sensible-utils ssh ucf Suggested packages: krb5-doc krb5-user libhwloc-contrib-plugins pciutils lm-sensors mpi-default mrbayes-doc gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass molly-guard ufw readline-doc Recommended packages: krb5-locales libgpm2 xauth default-logind | logind | libpam-systemd ncurses-term psmisc The following NEW packages will be installed: ibverbs-providers lib32gcc-s1 lib32stdc++6 libatomic1 libbsd0 libc6-i386 libcbor0.8 libclang-common-15-dev libclang-cpp15 libclc-15 libclc-15-dev libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libgssapi-krb5-2 libhmsbeagle1v5 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm15 libllvmspirvlib15 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnsl2 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libproc2-0 libpsm-infinipath1 libpsm2-2 librdmacm1 libreadline8 libsensors-config libsensors5 libssl3 libtirpc-common libtirpc3 libucx0 libwrap0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 mesa-opencl-icd mpi-default-bin mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-server openssh-sftp-server procps readline-common runit-helper sensible-utils ssh ucf 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 543 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:9 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2+deb12u2 [990 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 openssh-sftp-server amd64 1:9.2p1-2+deb12u2 [66.0 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 runit-helper all 2.15.2 [6520 B] Get:19 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libwrap0 amd64 7.6.q-32 [54.9 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 openssh-server amd64 1:9.2p1-2+deb12u2 [456 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libc6-i386 amd64 2.36-9+deb12u7 [2460 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 lib32gcc-s1 amd64 12.2.0-14 [59.7 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 lib32stdc++6 amd64 12.2.0-14 [644 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:33 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libclang-common-15-dev amd64 1:15.0.6-4+b1 [5855 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp15 amd64 1:15.0.6-4+b1 [11.6 MB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libclc-15-dev all 1:15.0.6-4 [53.6 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libclc-15 all 1:15.0.6-4 [10.1 MB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get:42 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libllvmspirvlib15 amd64 15.0.0-2 [719 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 mesa-opencl-icd amd64 22.3.6-1+deb12u1 [15.5 MB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libhmsbeagle1v5 amd64 3.1.2+dfsg-13 [135 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-3~deb12u1 [13.5 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+deb12u1 [622 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 mpi-default-bin amd64 1.14 [4752 B] Get:79 http://deb.debian.org/debian bookworm/main amd64 ssh all 1:9.2p1-2+deb12u2 [174 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 mrbayes-mpi amd64 3.2.7a-6 [597 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 8s (13.1 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../02-libcbor0.8_0.8.0-2+b1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2+b1) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../03-libssl3_3.0.13-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.13-1~deb12u1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../04-libfido2-1_1.12.0-2+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.12.0-2+b1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../10-openssh-client_1%3a9.2p1-2+deb12u2_amd64.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u2) ... Selecting previously unselected package openssh-sftp-server. Preparing to unpack .../11-openssh-sftp-server_1%3a9.2p1-2+deb12u2_amd64.deb ... Unpacking openssh-sftp-server (1:9.2p1-2+deb12u2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../12-libncursesw6_6.4-4_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../13-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../14-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../15-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package ucf. Preparing to unpack .../16-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package runit-helper. Preparing to unpack .../17-runit-helper_2.15.2_all.deb ... Unpacking runit-helper (2.15.2) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../18-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../19-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../20-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../21-libwrap0_7.6.q-32_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-32) ... Selecting previously unselected package openssh-server. Preparing to unpack .../22-openssh-server_1%3a9.2p1-2+deb12u2_amd64.deb ... Unpacking openssh-server (1:9.2p1-2+deb12u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../23-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../24-libnl-3-200_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../25-libnl-route-3-200_3.7.0-0.2+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../26-libibverbs1_44.0-2_amd64.deb ... Unpacking libibverbs1:amd64 (44.0-2) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../27-ibverbs-providers_44.0-2_amd64.deb ... Unpacking ibverbs-providers:amd64 (44.0-2) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../28-libc6-i386_2.36-9+deb12u7_amd64.deb ... Unpacking libc6-i386 (2.36-9+deb12u7) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../29-lib32gcc-s1_12.2.0-14_amd64.deb ... Unpacking lib32gcc-s1 (12.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../30-lib32stdc++6_12.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (12.2.0-14) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../31-libatomic1_12.2.0-14_amd64.deb ... Unpacking libatomic1:amd64 (12.2.0-14) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../32-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../33-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../34-libz3-4_4.8.12-3.1_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1) ... Selecting previously unselected package libllvm15:amd64. Preparing to unpack .../35-libllvm15_1%3a15.0.6-4+b1_amd64.deb ... Unpacking libllvm15:amd64 (1:15.0.6-4+b1) ... Selecting previously unselected package libclang-common-15-dev. Preparing to unpack .../36-libclang-common-15-dev_1%3a15.0.6-4+b1_amd64.deb ... Unpacking libclang-common-15-dev (1:15.0.6-4+b1) ... Selecting previously unselected package libclang-cpp15. Preparing to unpack .../37-libclang-cpp15_1%3a15.0.6-4+b1_amd64.deb ... Unpacking libclang-cpp15 (1:15.0.6-4+b1) ... Selecting previously unselected package libclc-15-dev. Preparing to unpack .../38-libclc-15-dev_1%3a15.0.6-4_all.deb ... Unpacking libclc-15-dev (1:15.0.6-4) ... Selecting previously unselected package libclc-15. Preparing to unpack .../39-libclc-15_1%3a15.0.6-4_all.deb ... Unpacking libclc-15 (1:15.0.6-4) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../40-libdrm-common_2.4.114-1_all.deb ... Unpacking libdrm-common (2.4.114-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../41-libdrm2_2.4.114-1+b1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.114-1+b1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../42-libdrm-amdgpu1_2.4.114-1+b1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../43-libdrm-nouveau2_2.4.114-1+b1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../44-libdrm-radeon1_2.4.114-1+b1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.114-1+b1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../45-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../46-libevent-core-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../47-libevent-pthreads-2.1-7_2.1.12-stable-8_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../48-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../49-libpsm-infinipath1_3.3+20.604758e7-6.2_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../50-libnuma1_2.0.16-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.16-1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../51-libpsm2-2_11.2.185-2_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../52-librdmacm1_44.0-2_amd64.deb ... Unpacking librdmacm1:amd64 (44.0-2) ... Selecting previously unselected package libfabric1:amd64. Preparing to unpack .../53-libfabric1_1.17.0-3_amd64.deb ... Unpacking libfabric1:amd64 (1.17.0-3) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../54-ocl-icd-libopencl1_2.3.1-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.1-1) ... Selecting previously unselected package libllvmspirvlib15:amd64. Preparing to unpack .../55-libllvmspirvlib15_15.0.0-2_amd64.deb ... Unpacking libllvmspirvlib15:amd64 (15.0.0-2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../56-libsensors-config_1%3a3.6.0-7.1_all.deb ... Unpacking libsensors-config (1:3.6.0-7.1) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../57-libsensors5_1%3a3.6.0-7.1_amd64.deb ... Unpacking libsensors5:amd64 (1:3.6.0-7.1) ... Selecting previously unselected package mesa-opencl-icd:amd64. Preparing to unpack .../58-mesa-opencl-icd_22.3.6-1+deb12u1_amd64.deb ... Unpacking mesa-opencl-icd:amd64 (22.3.6-1+deb12u1) ... Selecting previously unselected package libhmsbeagle1v5:amd64. Preparing to unpack .../59-libhmsbeagle1v5_3.1.2+dfsg-13_amd64.deb ... Unpacking libhmsbeagle1v5:amd64 (3.1.2+dfsg-13) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../60-libpciaccess0_0.17-2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../61-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../62-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../63-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../64-libx11-data_2%3a1.8.4-2+deb12u2_all.deb ... Unpacking libx11-data (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../65-libx11-6_2%3a1.8.4-2+deb12u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../66-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../67-libxnvctrl0_525.85.05-3~deb12u1_amd64.deb ... Unpacking libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../68-libhwloc15_2.9.0-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.9.0-1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../69-libhwloc-plugins_2.9.0-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.9.0-1) ... Selecting previously unselected package libmunge2. Preparing to unpack .../70-libmunge2_0.5.15-2_amd64.deb ... Unpacking libmunge2 (0.5.15-2) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../71-libpmix2_4.2.2-1+deb12u1_amd64.deb ... Unpacking libpmix2:amd64 (4.2.2-1+deb12u1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../72-libucx0_1.13.1-1_amd64.deb ... Unpacking libucx0:amd64 (1.13.1-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../73-libopenmpi3_4.1.4-3+b1_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.4-3+b1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../74-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../75-openmpi-common_4.1.4-3_all.deb ... Unpacking openmpi-common (4.1.4-3) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../76-openmpi-bin_4.1.4-3+b1_amd64.deb ... Unpacking openmpi-bin (4.1.4-3+b1) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../77-mpi-default-bin_1.14_amd64.deb ... Unpacking mpi-default-bin (1.14) ... Selecting previously unselected package ssh. Preparing to unpack .../78-ssh_1%3a9.2p1-2+deb12u2_all.deb ... Unpacking ssh (1:9.2p1-2+deb12u2) ... Selecting previously unselected package mrbayes-mpi. Preparing to unpack .../79-mrbayes-mpi_3.2.7a-6_amd64.deb ... Unpacking mrbayes-mpi (3.2.7a-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up runit-helper (2.15.2) ... Setting up libpciaccess0:amd64 (0.17-2) ... Setting up libclc-15-dev (1:15.0.6-4) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libicu72:amd64 (72.1-3) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libcbor0.8:amd64 (0.8.0-2+b1) ... Setting up libssl3:amd64 (3.0.13-1~deb12u1) ... Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libhwloc15:amd64 (2.9.0-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libsensors5:amd64 (1:3.6.0-7.1) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.3.1-1) ... Setting up procps (2:4.0.2-3) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up libc6-i386 (2.36-9+deb12u7) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up lib32gcc-s1 (12.2.0-14) ... Setting up lib32stdc++6 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up ucf (3.0043+nmu1) ... Setting up libdrm2:amd64 (2.4.114-1+b1) ... Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Setting up libllvmspirvlib15:amd64 (15.0.0-2) ... Setting up libclang-common-15-dev (1:15.0.6-4+b1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... Setting up openssh-client (1:9.2p1-2+deb12u2) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Setting up libclang-cpp15 (1:15.0.6-4+b1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libclc-15 (1:15.0.6-4) ... Setting up mesa-opencl-icd:amd64 (22.3.6-1+deb12u1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up openssh-sftp-server (1:9.2p1-2+deb12u2) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libhmsbeagle1v5:amd64 (3.1.2+dfsg-13) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libwrap0:amd64 (7.6.q-32) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up openssh-server (1:9.2p1-2+deb12u2) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:1xNl2s7vIjrLMZId09eaFzhOwor0kTmr9Vy10i2AcB4 root@piu-slave-ubc-01 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:NJ6lKlR5+LPRRbs5eo3k4sOC7dVImTz1dsDoKsNDU/I root@piu-slave-ubc-01 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:QE/XcDp3A1+QweJhquujuhgE95HCnKyLnkLU1FaxiOg root@piu-slave-ubc-01 (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpmix2:amd64 (4.2.2-1+deb12u1) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up ssh (1:9.2p1-2+deb12u2) ... Setting up mpi-default-bin (1.14) ... Setting up mrbayes-mpi (3.2.7a-6) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m27.0s INFO: Running scripts post_install 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_install_exceptions'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_install_exceptions'] 0m27.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m27.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m27.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpbic6nmz8 to bookworm-next 0m27.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 0m27.4s INFO: Running scripts pre_distupgrade 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_exceptions'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'update'] 0m29.6s DUMP: Get:1 http://security.debian.org bookworm-security InRelease [48.0 kB] Hit:2 http://deb.debian.org/debian bookworm InRelease Get:3 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:6 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:7 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:8 http://security.debian.org bookworm-security/main Translation-en [106 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [111 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [64.4 kB] Fetched 650 kB in 1s (629 kB/s) Reading package lists... 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'update'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-yf', 'dist-upgrade'] 0m34.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libc6-i386 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl3 libsystemd0 libudev1 openssh-client openssh-server openssh-sftp-server ssh 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 10.5 MB of archives. After this operation, 19.5 kB of additional disk space will be used. Get:1 http://security.debian.org bookworm-security/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:2 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6-i386 amd64 2.36-9+deb12u8 [2459 kB] Get:3 http://security.debian.org bookworm-security/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:4 http://security.debian.org bookworm-security/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:5 http://security.debian.org bookworm-security/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:6 http://security.debian.org bookworm-security/main amd64 openssh-sftp-server amd64 1:9.2p1-2+deb12u3 [65.8 kB] Get:7 http://security.debian.org bookworm-security/main amd64 openssh-server amd64 1:9.2p1-2+deb12u3 [456 kB] Get:8 http://security.debian.org bookworm-security/main amd64 openssh-client amd64 1:9.2p1-2+deb12u3 [991 kB] Get:9 http://security.debian.org bookworm-security/main amd64 ssh all 1:9.2p1-2+deb12u3 [174 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:11 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:12 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libssl3 amd64 3.0.14-1~deb12u1 [2024 kB] Get:13 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:14 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.5 MB in 0s (69.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8803 files and directories currently installed.) Preparing to unpack .../libc6-i386_2.36-9+deb12u8_amd64.deb ... Unpacking libc6-i386 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Preparing to unpack .../libc6_2.36-9+deb12u8_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8803 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc-bin (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8803 files and directories currently installed.) Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../1-libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libssl3_3.0.14-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.14-1~deb12u1) over (3.0.13-1~deb12u1) ... Preparing to unpack .../5-openssh-sftp-server_1%3a9.2p1-2+deb12u3_amd64.deb ... Unpacking openssh-sftp-server (1:9.2p1-2+deb12u3) over (1:9.2p1-2+deb12u2) ... Preparing to unpack .../6-openssh-server_1%3a9.2p1-2+deb12u3_amd64.deb ... Unpacking openssh-server (1:9.2p1-2+deb12u3) over (1:9.2p1-2+deb12u2) ... Preparing to unpack .../7-openssh-client_1%3a9.2p1-2+deb12u3_amd64.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u3) over (1:9.2p1-2+deb12u2) ... Preparing to unpack .../8-libsystemd0_252.29-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8803 files and directories currently installed.) Preparing to unpack .../libudev1_252.29-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8803 files and directories currently installed.) Preparing to unpack .../ssh_1%3a9.2p1-2+deb12u3_all.deb ... Unpacking ssh (1:9.2p1-2+deb12u3) over (1:9.2p1-2+deb12u2) ... Setting up libssl3:amd64 (3.0.14-1~deb12u1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up libc6-i386 (2.36-9+deb12u8) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Setting up openssh-client (1:9.2p1-2+deb12u3) ... Setting up openssh-sftp-server (1:9.2p1-2+deb12u3) ... Setting up openssh-server (1:9.2p1-2+deb12u3) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up ssh (1:9.2p1-2+deb12u3) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-yf', 'dist-upgrade'] 0m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m34.3s DUMP: a7383adc5fdea12f93db4552c396e73a - 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m34.6s DUMP: Package: mrbayes-mpi Source: mrbayes Version: 3.2.7a-6 Installed-Size: 1614 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.34), libhmsbeagle1v5 (>= 3.1.2+dfsg), libreadline8 (>= 6.0), mpi-default-bin, ssh Suggests: mpi-default, mrbayes-doc Description-en: Bayesian Inference of Phylogeny - mpi version Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. . This package offers a binary compiled for parallel computation with MPI. Description-md5: d4667b242cc8f99f098ff96397619072 Homepage: http://mrbayes.csit.fsu.edu/ Section: science Priority: optional Filename: pool/main/m/mrbayes/mrbayes-mpi_3.2.7a-6_amd64.deb Size: 596764 MD5sum: 29fcd74aa451a4e00e794e7a6abeed91 SHA256: 8caab4ac53486ec48d68083c5f9c1a7c68178ac3de211d102d71a02de00b71c0 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'show', '--no-all-versions', 'mrbayes-mpi'] 0m34.6s INFO: apt-cache knows about the following packages: mrbayes-mpi 0m34.6s INFO: Running scripts pre_install 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_database-server'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_database-server'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_exceptions'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_extras'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_extras'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy'] 0m34.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m34.7s DUMP: mrbayes-mpi: Installed: 3.2.7a-6 Candidate: 3.2.7a-6 Version table: *** 3.2.7a-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m35.3s DUMP: Reading package lists... Building dependency tree... Reading state information... mrbayes-mpi is already the newest version (3.2.7a-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-y', 'install', 'mrbayes-mpi'] 0m35.3s INFO: Running scripts post_install 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_install_exceptions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_install_exceptions'] 0m35.4s INFO: Running scripts post_distupgrade 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_exceptions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_exceptions'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_zz_backports'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_distupgrade_zz_backports'] 0m35.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m35.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m35.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m36.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m36.3s INFO: Running scripts pre_install 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_database-server'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_database-server'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_exceptions'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_exceptions'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_extras'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_extras'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy'] 0m36.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy'] 0m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m36.4s DUMP: mrbayes-mpi: Installed: 3.2.7a-6 Candidate: 3.2.7a-6 Version table: *** 3.2.7a-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-cache', 'policy', 'mrbayes-mpi'] 0m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-y', 'install', 'mrbayes-mpi=3.2.7a-6'] 0m37.0s DUMP: Reading package lists... Building dependency tree... Reading state information... mrbayes-mpi is already the newest version (3.2.7a-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', '-y', 'install', 'mrbayes-mpi=3.2.7a-6'] 0m37.0s INFO: Running scripts post_install 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_install_exceptions'] 0m37.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_install_exceptions'] 0m37.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m37.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m37.6s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m37.7s INFO: /bin converted to /usr/bin by /usr merge 0m37.7s INFO: /lib converted to /usr/lib by /usr merge 0m37.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m37.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m37.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m37.7s INFO: /lib/runit-helper converted to /usr/lib/runit-helper by /usr merge 0m37.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m37.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m37.7s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m37.7s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m37.7s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m37.7s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m37.7s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m37.7s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m37.7s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m37.7s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m37.7s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m37.7s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m37.7s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m37.7s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m37.7s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m37.7s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m37.7s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m37.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m37.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m37.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m37.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m37.7s INFO: /lib32 converted to /usr/lib32 by /usr merge 0m37.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m37.7s INFO: /sbin converted to /usr/sbin by /usr merge 0m38.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', '-ac', '--ignore-obsolete'] 0m40.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', '-ac', '--ignore-obsolete'] 0m40.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m40.5s DUMP: 0.15.6 0m40.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m40.5s INFO: Running adequate version 0.15.6 now. 0m40.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'mrbayes-mpi'] 0m40.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'mrbayes-mpi'] 0m40.6s INFO: Running scripts pre_remove 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_exceptions'] 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/pre_remove_exceptions'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.8s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed ibverbs-providers:amd64 ibverbs-providers 44.0-2 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed lib32gcc-s1 lib32gcc-s1 12.2.0-14 install ok installed lib32stdc++6 lib32stdc++6 12.2.0-14 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libc6-i386 libc6-i386 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcbor0.8:amd64 libcbor0.8 0.8.0-2+b1 install ok installed libclang-common-15-dev libclang-common-15-dev 1:15.0.6-4+b1 install ok installed libclang-cpp15 libclang-cpp15 1:15.0.6-4+b1 install ok installed libclc-15 libclc-15 1:15.0.6-4 install ok installed libclc-15-dev libclc-15-dev 1:15.0.6-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.114-1+b1 install ok installed libdrm-common libdrm-common 2.4.114-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.114-1+b1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.114-1+b1 install ok installed libdrm2:amd64 libdrm2 2.4.114-1+b1 install ok installed libedit2:amd64 libedit2 3.1-20221030-2 install ok installed libelf1:amd64 libelf1 0.188-2.1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-8 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-8 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libfabric1:amd64 libfabric1 1.17.0-3 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfido2-1:amd64 libfido2-1 1.12.0-2+b1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libhmsbeagle1v5:amd64 libhmsbeagle1v5 3.1.2+dfsg-13 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.9.0-1 install ok installed libhwloc15:amd64 libhwloc15 2.9.0-1 install ok installed libibverbs1:amd64 libibverbs1 44.0-2 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed libllvm15:amd64 libllvm15 1:15.0.6-4+b1 install ok installed libllvmspirvlib15:amd64 libllvmspirvlib15 15.0.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libmunge2 libmunge2 0.5.15-2 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.2+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.16-1 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.4-3+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpmix2:amd64 libpmix2 4.2.2-1+deb12u1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.2-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.2 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed librdmacm1:amd64 librdmacm1 44.0-2 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsensors-config libsensors-config 1:3.6.0-7.1 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7.1 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssl3:amd64 libssl3 3.0.14-1~deb12u1 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libucx0:amd64 libucx0 1.13.1-1 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libwrap0:amd64 libwrap0 7.6.q-32 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxnvctrl0:amd64 libxnvctrl0 525.85.05-3~deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mesa-opencl-icd:amd64 mesa-opencl-icd 22.3.6-1+deb12u1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed mpi-default-bin mpi-default-bin 1.14 install ok installed mrbayes-mpi mrbayes-mpi 3.2.7a-6 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.1-1 install ok installed openmpi-bin openmpi-bin 4.1.4-3+b1 install ok installed openmpi-common openmpi-common 4.1.4-3 install ok installed openssh-client openssh-client 1:9.2p1-2+deb12u3 install ok installed openssh-server openssh-server 1:9.2p1-2+deb12u3 install ok installed openssh-sftp-server openssh-sftp-server 1:9.2p1-2+deb12u3 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed procps procps 2:4.0.2-3 install ok installed readline-common readline-common 8.2-1.3 install ok installed runit-helper runit-helper 2.15.2 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed ssh ssh 1:9.2p1-2+deb12u3 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'lib32gcc-s1', 'lib32stdc++6', 'libatomic1:amd64', 'libbsd0:amd64', 'libc6-i386', 'libcbor0.8:amd64', 'libclang-common-15-dev', 'libclang-cpp15', 'libclc-15', 'libclc-15-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm15:amd64', 'libllvmspirvlib15:amd64', 'libmunge2', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libproc2-0:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsensors-config', 'libsensors5:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libucx0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'ucf', 'mrbayes-mpi'] 0m45.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ibverbs-providers lib32gcc-s1 lib32stdc++6 libatomic1 libbsd0 libc6-i386 libcbor0.8 libclang-common-15-dev libclang-cpp15 libclc-15 libclc-15-dev libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libgssapi-krb5-2 libhmsbeagle1v5 libhwloc-plugins libhwloc15 libibverbs1 libicu72 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm15 libllvmspirvlib15 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnsl2 libnuma1 libopenmpi3 libpciaccess0 libpmix2 libproc2-0 libpsm-infinipath1 libpsm2-2 librdmacm1 libreadline8 libsensors-config libsensors5 libssl3 libtirpc-common libtirpc3 libucx0 libwrap0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libz3-4 mesa-opencl-icd mpi-default-bin mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-server openssh-sftp-server procps readline-common runit-helper sensible-utils ssh ucf 0 upgraded, 0 newly installed, 80 to remove and 0 not upgraded. After this operation, 543 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8803 files and directories currently installed.) Removing mrbayes-mpi (3.2.7a-6) ... Removing mpi-default-bin (1.14) ... Removing openmpi-bin (4.1.4-3+b1) ... Removing libopenmpi3:amd64 (4.1.4-3+b1) ... Removing libucx0:amd64 (1.13.1-1) ... Removing libfabric1:amd64 (1.17.0-3) ... Removing ibverbs-providers:amd64 (44.0-2) ... Removing libhmsbeagle1v5:amd64 (3.1.2+dfsg-13) ... Removing mesa-opencl-icd:amd64 (22.3.6-1+deb12u1) ... Removing libclc-15 (1:15.0.6-4) ... Removing libclang-common-15-dev (1:15.0.6-4+b1) ... Removing lib32stdc++6 (12.2.0-14) ... Removing lib32gcc-s1 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libpmix2:amd64 (4.2.2-1+deb12u1) ... Removing libhwloc-plugins:amd64 (2.9.0-1) ... Removing libxnvctrl0:amd64 (525.85.05-3~deb12u1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing ssh (1:9.2p1-2+deb12u3) ... Removing openssh-server (1:9.2p1-2+deb12u3) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libc6-i386 (2.36-9+deb12u8) ... Removing libclang-cpp15 (1:15.0.6-4+b1) ... Removing libclc-15-dev (1:15.0.6-4) ... Removing libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Removing libdrm-radeon1:amd64 (2.4.114-1+b1) ... Removing libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Removing libdrm2:amd64 (2.4.114-1+b1) ... Removing libdrm-common (2.4.114-1) ... Removing libllvmspirvlib15:amd64 (15.0.0-2) ... Removing libllvm15:amd64 (1:15.0.6-4+b1) ... Removing libelf1:amd64 (0.188-2.1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-8) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libwrap0:amd64 (7.6.q-32) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libhwloc15:amd64 (2.9.0-1) ... Removing librdmacm1:amd64 (44.0-2) ... Removing libibverbs1:amd64 (44.0-2) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libmunge2 (0.5.15-2) ... Removing procps (2:4.0.2-3) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.2+b1) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.16-1) ... Removing libpciaccess0:amd64 (0.17-2) ... Removing libproc2-0:amd64 (2:4.0.2-3) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libreadline8:amd64 (8.2-1.3) ... Removing libsensors5:amd64 (1:3.6.0-7.1) ... Removing libsensors-config (1:3.6.0-7.1) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libz3-4:amd64 (4.8.12-3.1) ... Removing ocl-icd-libopencl1:amd64 (2.3.1-1) ... Removing openmpi-common (4.1.4-3) ... Removing openssh-sftp-server (1:9.2p1-2+deb12u3) ... Removing readline-common (8.2-1.3) ... Removing runit-helper (2.15.2) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.17+nmu1) ... Removing openssh-client (1:9.2p1-2+deb12u3) ... Removing libedit2:amd64 (3.1-20221030-2) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libfido2-1:amd64 (1.12.0-2+b1) ... Removing libcbor0.8:amd64 (0.8.0-2+b1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing libssl3:amd64 (3.0.14-1~deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'lib32gcc-s1', 'lib32stdc++6', 'libatomic1:amd64', 'libbsd0:amd64', 'libc6-i386', 'libcbor0.8:amd64', 'libclang-common-15-dev', 'libclang-cpp15', 'libclc-15', 'libclc-15-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm15:amd64', 'libllvmspirvlib15:amd64', 'libmunge2', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libproc2-0:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsensors-config', 'libsensors5:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libucx0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'ucf', 'mrbayes-mpi'] 0m45.4s INFO: Running scripts post_remove 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_remove_exceptions'] 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_remove_exceptions'] 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'lib32gcc-s1', 'lib32stdc++6', 'libatomic1:amd64', 'libbsd0:amd64', 'libc6-i386', 'libcbor0.8:amd64', 'libclang-common-15-dev', 'libclang-cpp15', 'libclc-15', 'libclc-15-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm15:amd64', 'libllvmspirvlib15:amd64', 'libmunge2', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libproc2-0:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsensors-config', 'libsensors5:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libucx0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'ucf'] 0m46.5s DUMP: (Reading database ... 6154 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (44.0-2) ... dpkg: warning: ignoring request to remove lib32gcc-s1 which isn't installed dpkg: warning: ignoring request to remove lib32stdc++6 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed Purging configuration files for libc6-i386 (2.36-9+deb12u8) ... dpkg: warning: ignoring request to remove libcbor0.8 which isn't installed dpkg: warning: ignoring request to remove libclang-common-15-dev which isn't installed dpkg: warning: ignoring request to remove libclang-cpp15 which isn't installed dpkg: warning: ignoring request to remove libclc-15 which isn't installed dpkg: warning: ignoring request to remove libclc-15-dev which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... dpkg: warning: ignoring request to remove libhmsbeagle1v5 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libllvm15 which isn't installed dpkg: warning: ignoring request to remove libllvmspirvlib15 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.2) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed Purging configuration files for libsensors-config (1:3.6.0-7.1) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed Purging configuration files for libwrap0:amd64 (7.6.q-32) ... dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed Purging configuration files for mesa-opencl-icd:amd64 (22.3.6-1+deb12u1) ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (4.1.4-3+b1) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:9.2p1-2+deb12u3) ... Purging configuration files for openssh-server (1:9.2p1-2+deb12u3) ... deluser: `/usr/bin/crontab' not executed. Skipping crontab removal. Package `cron' required. dpkg: warning: ignoring request to remove openssh-sftp-server which isn't installed Purging configuration files for procps (2:4.0.2-3) ... Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove runit-helper which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove ssh which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'lib32gcc-s1', 'lib32stdc++6', 'libatomic1:amd64', 'libbsd0:amd64', 'libc6-i386', 'libcbor0.8:amd64', 'libclang-common-15-dev', 'libclang-cpp15', 'libclc-15', 'libclc-15-dev', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfido2-1:amd64', 'libgssapi-krb5-2:amd64', 'libhmsbeagle1v5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu72:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libllvm15:amd64', 'libllvmspirvlib15:amd64', 'libmunge2', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnsl2:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpmix2:amd64', 'libproc2-0:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libreadline8:amd64', 'libsensors-config', 'libsensors5:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libucx0:amd64', 'libwrap0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'mesa-opencl-icd:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-server', 'openssh-sftp-server', 'procps', 'readline-common', 'runit-helper', 'sensible-utils', 'ssh', 'ucf'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--purge', 'mrbayes-mpi'] 0m46.6s DUMP: dpkg: warning: ignoring request to remove mrbayes-mpi which isn't installed 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--purge', 'mrbayes-mpi'] 0m46.6s INFO: Running scripts post_purge 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_purge_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_purge_exceptions'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--purge', '--pending'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--purge', '--pending'] 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--remove', '--pending'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg', '--remove', '--pending'] 0m46.6s INFO: Running scripts post_test 0m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_test_exceptions'] 0m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'tmp/scripts/post_test_exceptions'] 0m46.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m46.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg-divert', '--list'] 0m46.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'dpkg-divert', '--list'] 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'clean'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8', 'apt-get', 'clean'] 0m47.0s DEBUG: Recording chroot state 0m47.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/shm'] 0m47.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/shm'] 0m47.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/console'] 0m47.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/console'] 0m47.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/ptmx'] 0m47.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/ptmx'] 0m47.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/pts'] 0m47.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/dev/pts'] 0m47.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/proc'] 0m47.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8/proc'] 0m47.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m48.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbic6nmz8'] 0m48.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbic6nmz8 0m48.0s INFO: PASS: Upgrading between Debian distributions. 0m48.0s INFO: PASS: All tests. 0m48.0s INFO: piuparts run ends. ret=0 End: 2024-08-23 06:47:20 GMT