Start: 2024-08-21 19:06:47 GMT [bookworm] Package: python3-biomaj3-download Source: biomaj3-download Version: 3.2.9-1 Installed-Size: 249 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcrypt, python3-biomaj3-core (>= 3.0.26), python3-biomaj3-zipkin, python3-consul, python3-flask, python3-ftputil, python3-humanfriendly, python3-irodsclient, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-redis, python3-requests, python3-simpleeval, python3-tenacity, python3-yaml, python3:any Suggests: python3-gunicorn, redis-server Description: BioMAJ download management library Homepage: https://github.com/genouest/biomaj-download Description-md5: aada8ee47195cf3aed12eb5b704e37df Section: python Priority: optional Filename: pool/main/b/biomaj3-download/python3-biomaj3-download_3.2.9-1_all.deb Size: 51032 MD5sum: 45b8163e5dfbb5b68c824f4f70b80215 SHA256: 566f1d1035592840be5a04490ca40c54ae6db01066afebc7eb9bbc299caa6e89 [bookworm-next] Package: python3-biomaj3-download Source: biomaj3-download Version: 3.2.9-1 Installed-Size: 249 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcrypt, python3-biomaj3-core (>= 3.0.26), python3-biomaj3-zipkin, python3-consul, python3-flask, python3-ftputil, python3-humanfriendly, python3-irodsclient, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-redis, python3-requests, python3-simpleeval, python3-tenacity, python3-yaml, python3:any Suggests: python3-gunicorn, redis-server Description: BioMAJ download management library Homepage: https://github.com/genouest/biomaj-download Description-md5: aada8ee47195cf3aed12eb5b704e37df Section: python Priority: optional Filename: pool/main/b/biomaj3-download/python3-biomaj3-download_3.2.9-1_all.deb Size: 51032 MD5sum: 45b8163e5dfbb5b68c824f4f70b80215 SHA256: 566f1d1035592840be5a04490ca40c54ae6db01066afebc7eb9bbc299caa6e89 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt python3-biomaj3-download=3.2.9-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201642~1.4.3-11-g36a88c35 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt python3-biomaj3-download=3.2.9-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmppcbtpb6i 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmppcbtpb6i 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/9', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmppcbtpb6i/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_minimize'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_minimize'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m3.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m3.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m3.8s INFO: Running scripts is_testable 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_test_root_password'] 0m3.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_test_root_password'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'show', '--no-all-versions', 'python3-biomaj3-download'] 0m4.0s DUMP: Package: python3-biomaj3-download Source: biomaj3-download Version: 3.2.9-1 Installed-Size: 249 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcrypt, python3-biomaj3-core (>= 3.0.26), python3-biomaj3-zipkin, python3-consul, python3-flask, python3-ftputil, python3-humanfriendly, python3-irodsclient, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-redis, python3-requests, python3-simpleeval, python3-tenacity, python3-yaml, python3:any Suggests: python3-gunicorn, redis-server Description-en: BioMAJ download management library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library and microservice to manage downloads in BioMAJ3 Description-md5: aada8ee47195cf3aed12eb5b704e37df Homepage: https://github.com/genouest/biomaj-download Section: python Priority: optional Filename: pool/main/b/biomaj3-download/python3-biomaj3-download_3.2.9-1_all.deb Size: 51032 MD5sum: 45b8163e5dfbb5b68c824f4f70b80215 SHA256: 566f1d1035592840be5a04490ca40c54ae6db01066afebc7eb9bbc299caa6e89 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'show', '--no-all-versions', 'python3-biomaj3-download'] 0m4.0s INFO: apt-cache knows about the following packages: python3-biomaj3-download 0m4.0s INFO: Running scripts pre_install 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_extras'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_extras'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy'] 0m4.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy', 'python3-biomaj3-download'] 0m4.1s DUMP: python3-biomaj3-download: Installed: (none) Candidate: 3.2.9-1 Version table: 3.2.9-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy', 'python3-biomaj3-download'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-y', 'install', 'python3-biomaj3-download'] 0m28.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates libbrotli1 libcurl3-gnutls libexpat1 libgssapi-krb5-2 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libprotobuf32 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl python3 python3-async-timeout python3-bcrypt python3-biomaj3-core python3-biomaj3-zipkin python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-consul python3-decorator python3-deprecated python3-distutils python3-elasticsearch python3-flask python3-ftputil python3-humanfriendly python3-idna python3-irodsclient python3-itsdangerous python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pbr python3-pika python3-pkg-resources python3-ply python3-prettytable python3-prometheus-client python3-protobuf python3-py-zipkin python3-pycurl python3-redis python3-requests python3-setuptools python3-simpleeval python3-six python3-tenacity python3-thriftpy python3-urllib3 python3-wcwidth python3-werkzeug python3-wrapt python3-yaml python3.11 python3.11-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python3-gunicorn redis-server python3-tornado python3-twisted python-elasticsearch-doc python-flask-doc python-jinja2-doc python-pika-doc python-ply-doc libcurl4-gnutls-dev python-pycurl-doc python3-hiredis python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc python-tenacity-doc python3-brotli ipython3 python-werkzeug-doc python3-lxml python3-watchdog python3.11-venv python3.11-doc binutils binfmt-support readline-doc Recommended packages: javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-asgiref python3-blinker python3-dotenv python3-simplejson python3-babel python3-openssl python3-pyinotify The following NEW packages will be installed: ca-certificates libbrotli1 libcurl3-gnutls libexpat1 libgssapi-krb5-2 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libprotobuf32 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl python3 python3-async-timeout python3-bcrypt python3-biomaj3-core python3-biomaj3-download python3-biomaj3-zipkin python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-consul python3-decorator python3-deprecated python3-distutils python3-elasticsearch python3-flask python3-ftputil python3-humanfriendly python3-idna python3-irodsclient python3-itsdangerous python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pbr python3-pika python3-pkg-resources python3-ply python3-prettytable python3-prometheus-client python3-protobuf python3-py-zipkin python3-pycurl python3-redis python3-requests python3-setuptools python3-simpleeval python3-six python3-tenacity python3-thriftpy python3-urllib3 python3-wcwidth python3-werkzeug python3-wrapt python3-yaml python3.11 python3.11-minimal readline-common 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 17.6 MB of archives. After this operation, 64.6 MB of additional disk space will be used. 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http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 python3-deprecated all 1.2.13-3 [14.1 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 python3-redis all 4.3.4-3 [188 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-simpleeval all 0.9.12-1 [22.2 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 python3-pbr all 5.10.0-2 [61.4 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 python3-tenacity all 8.2.1-1 [43.6 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 python3-biomaj3-download all 3.2.9-1 [51.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.6 MB in 2s (8562 kB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.13-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.13-1~deb12u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... Selecting previously unselected package libexpat1:amd64. 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Unpacking ca-certificates (20230311) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../03-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../04-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../05-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../06-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../07-libnghttp2-14_1.52.0-1+deb12u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Selecting previously unselected package libpsl5:amd64. 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Unpacking libprotobuf32:amd64 (3.21.12-3) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../14-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-async-timeout. Preparing to unpack .../15-python3-async-timeout_4.0.2-1_all.deb ... Unpacking python3-async-timeout (4.0.2-1) ... Selecting previously unselected package python3-cffi-backend:amd64. Preparing to unpack .../16-python3-cffi-backend_1.15.1-5+b1_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-5+b1) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../17-python3-bcrypt_3.2.2-1_amd64.deb ... Unpacking python3-bcrypt (3.2.2-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../18-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-six. 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Selecting previously unselected package python3-chardet. Preparing to unpack .../25-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../26-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-biomaj3-core. Preparing to unpack .../27-python3-biomaj3-core_3.0.28-1_all.deb ... Unpacking python3-biomaj3-core (3.0.28-1) ... Selecting previously unselected package python3-ply. Preparing to unpack .../28-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-thriftpy. Preparing to unpack .../29-python3-thriftpy_0.3.9+ds1-2+b3_amd64.deb ... Unpacking python3-thriftpy (0.3.9+ds1-2+b3) ... Selecting previously unselected package python3-py-zipkin. Preparing to unpack .../30-python3-py-zipkin_0.15.0-2_all.deb ... Unpacking python3-py-zipkin (0.15.0-2) ... Selecting previously unselected package python3-biomaj3-zipkin. Preparing to unpack .../31-python3-biomaj3-zipkin_0.2.2-3_all.deb ... Unpacking python3-biomaj3-zipkin (0.2.2-3) ... Selecting previously unselected package python3-consul. Preparing to unpack .../32-python3-consul_0.7.1-2_all.deb ... Unpacking python3-consul (0.7.1-2) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../33-python3-colorama_0.4.6-2_all.deb ... Unpacking python3-colorama (0.4.6-2) ... Selecting previously unselected package python3-click. Preparing to unpack .../34-python3-click_8.1.3-2_all.deb ... Unpacking python3-click (8.1.3-2) ... Selecting previously unselected package python3-itsdangerous. Preparing to unpack .../35-python3-itsdangerous_2.1.2-3_all.deb ... Unpacking python3-itsdangerous (2.1.2-3) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../36-python3-markupsafe_2.1.2-1+b1_amd64.deb ... Unpacking python3-markupsafe (2.1.2-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../37-python3-jinja2_3.1.2-1_all.deb ... Unpacking python3-jinja2 (3.1.2-1) ... Selecting previously unselected package python3-werkzeug. Preparing to unpack .../38-python3-werkzeug_2.2.2-3_all.deb ... Unpacking python3-werkzeug (2.2.2-3) ... Selecting previously unselected package python3-flask. Preparing to unpack .../39-python3-flask_2.2.2-3_all.deb ... Unpacking python3-flask (2.2.2-3) ... Selecting previously unselected package python3-ftputil. Preparing to unpack .../40-python3-ftputil_5.0.4-1_all.deb ... Unpacking python3-ftputil (5.0.4-1) ... Selecting previously unselected package python3-humanfriendly. Preparing to unpack .../41-python3-humanfriendly_10.0-3_all.deb ... Unpacking python3-humanfriendly (10.0-3) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../42-python3-wcwidth_0.2.5+dfsg1-1.1_all.deb ... Unpacking python3-wcwidth (0.2.5+dfsg1-1.1) ... Selecting previously unselected package python3-prettytable. Preparing to unpack .../43-python3-prettytable_3.6.0-1_all.deb ... Unpacking python3-prettytable (3.6.0-1) ... Selecting previously unselected package python3-irodsclient. Preparing to unpack .../44-python3-irodsclient_0.8.1-3_all.deb ... Unpacking python3-irodsclient (0.8.1-3) ... Selecting previously unselected package python3-pika. Preparing to unpack .../45-python3-pika_1.2.0-1_all.deb ... Unpacking python3-pika (1.2.0-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../46-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-prometheus-client. Preparing to unpack .../47-python3-prometheus-client_0.16.0-0.1_all.deb ... Unpacking python3-prometheus-client (0.16.0-0.1) ... Selecting previously unselected package python3-protobuf. Preparing to unpack .../48-python3-protobuf_3.21.12-3_amd64.deb ... Unpacking python3-protobuf (3.21.12-3) ... Selecting previously unselected package python3-pycurl. Preparing to unpack .../49-python3-pycurl_7.45.2-3_amd64.deb ... Unpacking python3-pycurl (7.45.2-3) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../50-python3-wrapt_1.14.1-2+b2_amd64.deb ... Unpacking python3-wrapt (1.14.1-2+b2) ... Selecting previously unselected package python3-deprecated. Preparing to unpack .../51-python3-deprecated_1.2.13-3_all.deb ... Unpacking python3-deprecated (1.2.13-3) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../52-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-redis. Preparing to unpack .../53-python3-redis_4.3.4-3_all.deb ... Unpacking python3-redis (4.3.4-3) ... 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Selecting previously unselected package python3-yaml. Preparing to unpack .../60-python3-yaml_6.0-3+b2_amd64.deb ... Unpacking python3-yaml (6.0-3+b2) ... Selecting previously unselected package python3-biomaj3-download. Preparing to unpack .../61-python3-biomaj3-download_3.2.9-1_all.deb ... Unpacking python3-biomaj3-download (3.2.9-1) ... Setting up media-types (10.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libprotobuf32:amd64 (3.21.12-3) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.13-1~deb12u1) ... Setting up readline-common (8.2-1.3) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-async-timeout (4.0.2-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-pycurl (7.45.2-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-wcwidth (0.2.5+dfsg1-1.1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-werkzeug (2.2.2-3) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-protobuf (3.21.12-3) ... Setting up python3-prettytable (3.6.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-deprecated (1.2.13-3) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-irodsclient (0.8.1-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-ftputil (5.0.4-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pika (1.2.0-1) ... Setting up python3-tenacity (8.2.1-1) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-itsdangerous (2.1.2-3) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-click (8.1.3-2) ... Setting up python3-simpleeval (0.9.12-1) ... Setting up python3-prometheus-client (0.16.0-0.1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-thriftpy (0.3.9+ds1-2+b3) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-redis (4.3.4-3) ... Setting up python3-consul (0.7.1-2) ... Setting up python3-py-zipkin (0.15.0-2) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-flask (2.2.2-3) ... Setting up python3-biomaj3-core (3.0.28-1) ... Setting up python3-biomaj3-download (3.2.9-1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-y', 'install', 'python3-biomaj3-download'] 0m28.5s INFO: Running scripts post_install 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_install_exceptions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_install_exceptions'] 0m28.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m29.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m29.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmppcbtpb6i to bookworm-next 0m29.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 0m29.5s INFO: Running scripts pre_distupgrade 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_exceptions'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_exceptions'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'update'] 0m31.3s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://security.debian.org bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:6 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [90.8 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [51.3 kB] Get:9 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:10 http://security.debian.org bookworm-security/main Translation-en [106 kB] Fetched 616 kB in 1s (811 kB/s) Reading package lists... 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'update'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-yf', 'dist-upgrade'] 0m34.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl3 libsystemd0 libudev1 openssl 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7825 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://security.debian.org bookworm-security/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:2 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:3 http://security.debian.org bookworm-security/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:4 http://security.debian.org bookworm-security/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:5 http://security.debian.org bookworm-security/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:6 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libssl3 amd64 3.0.13-1~deb12u2 [2023 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 openssl amd64 3.0.13-1~deb12u2 [1421 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7825 kB in 1s (10.5 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9454 files and directories currently installed.) Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../1-libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libssl3_3.0.13-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.13-1~deb12u2) over (3.0.13-1~deb12u1) ... Preparing to unpack .../5-openssl_3.0.13-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.13-1~deb12u2) over (3.0.13-1~deb12u1) ... Setting up libssl3:amd64 (3.0.13-1~deb12u2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up openssl (3.0.13-1~deb12u2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-yf', 'dist-upgrade'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.1s DUMP: d8d332c94c6ed6182814c5286ffa0dd5 - 0m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'show', '--no-all-versions', 'python3-biomaj3-download'] 0m35.4s DUMP: Package: python3-biomaj3-download Source: biomaj3-download Version: 3.2.9-1 Installed-Size: 249 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcrypt, python3-biomaj3-core (>= 3.0.26), python3-biomaj3-zipkin, python3-consul, python3-flask, python3-ftputil, python3-humanfriendly, python3-irodsclient, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-redis, python3-requests, python3-simpleeval, python3-tenacity, python3-yaml, python3:any Suggests: python3-gunicorn, redis-server Description-en: BioMAJ download management library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library and microservice to manage downloads in BioMAJ3 Description-md5: aada8ee47195cf3aed12eb5b704e37df Homepage: https://github.com/genouest/biomaj-download Section: python Priority: optional Filename: pool/main/b/biomaj3-download/python3-biomaj3-download_3.2.9-1_all.deb Size: 51032 MD5sum: 45b8163e5dfbb5b68c824f4f70b80215 SHA256: 566f1d1035592840be5a04490ca40c54ae6db01066afebc7eb9bbc299caa6e89 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'show', '--no-all-versions', 'python3-biomaj3-download'] 0m35.4s INFO: apt-cache knows about the following packages: python3-biomaj3-download 0m35.4s INFO: Running scripts pre_install 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_extras'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_extras'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy'] 0m35.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy', 'python3-biomaj3-download'] 0m35.5s DUMP: python3-biomaj3-download: Installed: 3.2.9-1 Candidate: 3.2.9-1 Version table: *** 3.2.9-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy', 'python3-biomaj3-download'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-y', 'install', 'python3-biomaj3-download'] 0m36.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biomaj3-download is already the newest version (3.2.9-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-y', 'install', 'python3-biomaj3-download'] 0m36.1s INFO: Running scripts post_install 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_install_exceptions'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_install_exceptions'] 0m36.1s INFO: Running scripts post_distupgrade 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m37.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m37.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m37.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m37.7s INFO: Running scripts pre_install 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_database-server'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_database-server'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_exceptions'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_exceptions'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_extras'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_extras'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy'] 0m37.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy', 'python3-biomaj3-download'] 0m37.8s DUMP: python3-biomaj3-download: Installed: 3.2.9-1 Candidate: 3.2.9-1 Version table: *** 3.2.9-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-cache', 'policy', 'python3-biomaj3-download'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-y', 'install', 'python3-biomaj3-download=3.2.9-1'] 0m38.4s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-biomaj3-download is already the newest version (3.2.9-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', '-y', 'install', 'python3-biomaj3-download=3.2.9-1'] 0m38.4s INFO: Running scripts post_install 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_install_exceptions'] 0m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_install_exceptions'] 0m38.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m39.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m39.5s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m39.5s INFO: /bin converted to /usr/bin by /usr merge 0m39.6s INFO: /lib converted to /usr/lib by /usr merge 0m39.6s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m39.6s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m39.6s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m39.6s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m39.6s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m39.6s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m39.6s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m39.6s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m39.6s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m39.6s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m39.6s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m39.6s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m39.6s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m39.6s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m39.6s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m39.6s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m39.6s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m39.6s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m39.6s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m39.6s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m39.6s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m39.6s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m39.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m39.6s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m39.6s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m39.6s INFO: /sbin converted to /usr/sbin by /usr merge 0m40.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', '-ac', '--ignore-obsolete'] 0m41.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', '-ac', '--ignore-obsolete'] 0m41.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.7s DUMP: 0.15.6 0m41.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.7s INFO: Running adequate version 0.15.6 now. 0m41.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'python3-biomaj3-download'] 0m41.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'python3-biomaj3-download'] 0m41.9s INFO: Running scripts pre_remove 0m41.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_exceptions'] 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/pre_remove_exceptions'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.8s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed ca-certificates ca-certificates 20230311 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u6 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libprotobuf32:amd64 libprotobuf32 3.21.12-3 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.13-1~deb12u2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed openssl openssl 3.0.13-1~deb12u2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-async-timeout python3-async-timeout 4.0.2-1 install ok installed python3-bcrypt python3-bcrypt 3.2.2-1 install ok installed python3-biomaj3-core python3-biomaj3-core 3.0.28-1 install ok installed python3-biomaj3-download python3-biomaj3-download 3.2.9-1 install ok installed python3-biomaj3-zipkin python3-biomaj3-zipkin 0.2.2-3 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.15.1-5+b1 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.0.1-2 install ok installed python3-click python3-click 8.1.3-2 install ok installed python3-colorama python3-colorama 0.4.6-2 install ok installed python3-consul python3-consul 0.7.1-2 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-deprecated python3-deprecated 1.2.13-3 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-elasticsearch python3-elasticsearch 7.17.6-1 install ok installed python3-flask python3-flask 2.2.2-3 install ok installed python3-ftputil python3-ftputil 5.0.4-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-3 install ok installed python3-idna python3-idna 3.3-1+deb12u1 install ok installed python3-irodsclient python3-irodsclient 0.8.1-3 install ok installed python3-itsdangerous python3-itsdangerous 2.1.2-3 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-markupsafe python3-markupsafe 2.1.2-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-pbr python3-pbr 5.10.0-2 install ok installed python3-pika python3-pika 1.2.0-1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-prettytable python3-prettytable 3.6.0-1 install ok installed python3-prometheus-client python3-prometheus-client 0.16.0-0.1 install ok installed python3-protobuf python3-protobuf 3.21.12-3 install ok installed python3-py-zipkin python3-py-zipkin 0.15.0-2 install ok installed python3-pycurl python3-pycurl 7.45.2-3 install ok installed python3-redis python3-redis 4.3.4-3 install ok installed python3-requests python3-requests 2.28.1+dfsg-1 install ok installed python3-setuptools python3-setuptools 66.1.1-1 install ok installed python3-simpleeval python3-simpleeval 0.9.12-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tenacity python3-tenacity 8.2.1-1 install ok installed python3-thriftpy python3-thriftpy 0.3.9+ds1-2+b3 install ok installed python3-urllib3 python3-urllib3 1.26.12-1 install ok installed python3-wcwidth python3-wcwidth 0.2.5+dfsg1-1.1 install ok installed python3-werkzeug python3-werkzeug 2.2.2-3 install ok installed python3-wrapt python3-wrapt 1.14.1-2+b2 install ok installed python3-yaml python3-yaml 6.0-3+b2 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed readline-common readline-common 8.2-1.3 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'remove', 'ca-certificates', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libgssapi-krb5-2:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'python3', 'python3-async-timeout', 'python3-bcrypt', 'python3-biomaj3-core', 'python3-biomaj3-zipkin', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-consul', 'python3-decorator', 'python3-deprecated', 'python3-distutils', 'python3-elasticsearch', 'python3-flask', 'python3-ftputil', 'python3-humanfriendly', 'python3-idna', 'python3-irodsclient', 'python3-itsdangerous', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pbr', 'python3-pika', 'python3-pkg-resources', 'python3-ply', 'python3-prettytable', 'python3-prometheus-client', 'python3-protobuf', 'python3-py-zipkin', 'python3-pycurl', 'python3-redis', 'python3-requests', 'python3-setuptools', 'python3-simpleeval', 'python3-six', 'python3-tenacity', 'python3-thriftpy', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'readline-common', 'python3-biomaj3-download'] 0m50.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libbrotli1 libcurl3-gnutls libexpat1 libgssapi-krb5-2 libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libprotobuf32 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl python3 python3-async-timeout python3-bcrypt python3-biomaj3-core python3-biomaj3-download python3-biomaj3-zipkin python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-consul python3-decorator python3-deprecated python3-distutils python3-elasticsearch python3-flask python3-ftputil python3-humanfriendly python3-idna python3-irodsclient python3-itsdangerous python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pbr python3-pika python3-pkg-resources python3-ply python3-prettytable python3-prometheus-client python3-protobuf python3-py-zipkin python3-pycurl python3-redis python3-requests python3-setuptools python3-simpleeval python3-six python3-tenacity python3-thriftpy python3-urllib3 python3-wcwidth python3-werkzeug python3-wrapt python3-yaml python3.11 python3.11-minimal readline-common 0 upgraded, 0 newly installed, 83 to remove and 0 not upgraded. After this operation, 64.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9454 files and directories currently installed.) Removing python3-biomaj3-download (3.2.9-1) ... Removing python3-consul (0.7.1-2) ... Removing python3-biomaj3-zipkin (0.2.2-3) ... Removing python3-biomaj3-core (3.0.28-1) ... Removing python3-elasticsearch (7.17.6-1) ... Removing python3-pycurl (7.45.2-3) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing python3-yaml (6.0-3+b2) ... Removing python3-tenacity (8.2.1-1) ... Removing python3-pbr (5.10.0-2) ... Removing python3-setuptools (66.1.1-1) ... Removing python3-distutils (3.11.2-3) ... Removing python3-redis (4.3.4-3) ... Removing python3-deprecated (1.2.13-3) ... Removing python3-wrapt (1.14.1-2+b2) ... Removing python3-irodsclient (0.8.1-3) ... Removing python3-prettytable (3.6.0-1) ... Removing python3-wcwidth (0.2.5+dfsg1-1.1) ... Removing python3-flask (2.2.2-3) ... Removing python3-werkzeug (2.2.2-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing python3-protobuf (3.21.12-3) ... Removing libprotobuf32:amd64 (3.21.12-3) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing python3-async-timeout (4.0.2-1) ... Removing python3-bcrypt (3.2.2-1) ... Removing python3-cffi-backend:amd64 (1.15.1-5+b1) ... Removing python3-click (8.1.3-2) ... Removing python3-colorama (0.4.6-2) ... Removing python3-prometheus-client (0.16.0-0.1) ... Removing python3-decorator (5.1.1-3) ... Removing python3-ftputil (5.0.4-1) ... Removing python3-humanfriendly (10.0-3) ... Removing python3-itsdangerous (2.1.2-3) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-markupsafe (2.1.2-1+b1) ... Removing python3-packaging (23.0-1) ... Removing python3-pika (1.2.0-1) ... Removing python3-simpleeval (0.9.12-1) ... Removing python3-py-zipkin (0.15.0-2) ... Removing python3-thriftpy (0.3.9+ds1-2+b3) ... Removing python3-ply (3.11-5) ... Removing python3-requests (2.28.1+dfsg-1) ... Removing python3-certifi (2022.9.24-1) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing openssl (3.0.13-1~deb12u2) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-charset-normalizer (3.0.1-2) ... Removing python3-idna (3.3-1+deb12u1) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-urllib3 (1.26.12-1) ... Removing python3-six (1.16.0-4) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libssl3:amd64 (3.0.13-1~deb12u2) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'remove', 'ca-certificates', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libgssapi-krb5-2:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'python3', 'python3-async-timeout', 'python3-bcrypt', 'python3-biomaj3-core', 'python3-biomaj3-zipkin', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-consul', 'python3-decorator', 'python3-deprecated', 'python3-distutils', 'python3-elasticsearch', 'python3-flask', 'python3-ftputil', 'python3-humanfriendly', 'python3-idna', 'python3-irodsclient', 'python3-itsdangerous', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pbr', 'python3-pika', 'python3-pkg-resources', 'python3-ply', 'python3-prettytable', 'python3-prometheus-client', 'python3-protobuf', 'python3-py-zipkin', 'python3-pycurl', 'python3-redis', 'python3-requests', 'python3-setuptools', 'python3-simpleeval', 'python3-six', 'python3-tenacity', 'python3-thriftpy', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'readline-common', 'python3-biomaj3-download'] 0m50.2s INFO: Running scripts post_remove 0m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_remove_exceptions'] 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_remove_exceptions'] 0m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--purge', 'ca-certificates', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libgssapi-krb5-2:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'python3', 'python3-async-timeout', 'python3-bcrypt', 'python3-biomaj3-core', 'python3-biomaj3-zipkin', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-consul', 'python3-decorator', 'python3-deprecated', 'python3-distutils', 'python3-elasticsearch', 'python3-flask', 'python3-ftputil', 'python3-humanfriendly', 'python3-idna', 'python3-irodsclient', 'python3-itsdangerous', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pbr', 'python3-pika', 'python3-pkg-resources', 'python3-ply', 'python3-prettytable', 'python3-prometheus-client', 'python3-protobuf', 'python3-py-zipkin', 'python3-pycurl', 'python3-redis', 'python3-requests', 'python3-setuptools', 'python3-simpleeval', 'python3-six', 'python3-tenacity', 'python3-thriftpy', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'readline-common'] 0m50.4s DUMP: (Reading database ... 6103 files and directories currently installed.) Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libprotobuf32 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (10.0.0) ... Purging configuration files for openssl (3.0.13-1~deb12u2) ... Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-async-timeout which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-biomaj3-core which isn't installed dpkg: warning: ignoring request to remove python3-biomaj3-zipkin which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-consul which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-deprecated which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-elasticsearch which isn't installed dpkg: warning: ignoring request to remove python3-flask which isn't installed dpkg: warning: ignoring request to remove python3-ftputil which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-irodsclient which isn't installed dpkg: warning: ignoring request to remove python3-itsdangerous which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed Purging configuration files for python3-pbr (5.10.0-2) ... dpkg: warning: ignoring request to remove python3-pika which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-prettytable which isn't installed dpkg: warning: ignoring request to remove python3-prometheus-client which isn't installed dpkg: warning: ignoring request to remove python3-protobuf which isn't installed dpkg: warning: ignoring request to remove python3-py-zipkin which isn't installed dpkg: warning: ignoring request to remove python3-pycurl which isn't installed dpkg: warning: ignoring request to remove python3-redis which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-simpleeval which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tenacity which isn't installed dpkg: warning: ignoring request to remove python3-thriftpy which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-werkzeug which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... Purging configuration files for readline-common (8.2-1.3) ... 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--purge', 'ca-certificates', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libexpat1:amd64', 'libgssapi-krb5-2:amd64', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libprotobuf32:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'python3', 'python3-async-timeout', 'python3-bcrypt', 'python3-biomaj3-core', 'python3-biomaj3-zipkin', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-consul', 'python3-decorator', 'python3-deprecated', 'python3-distutils', 'python3-elasticsearch', 'python3-flask', 'python3-ftputil', 'python3-humanfriendly', 'python3-idna', 'python3-irodsclient', 'python3-itsdangerous', 'python3-jinja2', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-packaging', 'python3-pbr', 'python3-pika', 'python3-pkg-resources', 'python3-ply', 'python3-prettytable', 'python3-prometheus-client', 'python3-protobuf', 'python3-py-zipkin', 'python3-pycurl', 'python3-redis', 'python3-requests', 'python3-setuptools', 'python3-simpleeval', 'python3-six', 'python3-tenacity', 'python3-thriftpy', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-wrapt', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'readline-common'] 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--purge', 'python3-biomaj3-download'] 0m50.4s DUMP: (Reading database ... 6096 files and directories currently installed.) Purging configuration files for python3-biomaj3-download (3.2.9-1) ... 0m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--purge', 'python3-biomaj3-download'] 0m50.4s INFO: Running scripts post_purge 0m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_purge_exceptions'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_purge_exceptions'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--purge', '--pending'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--purge', '--pending'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--remove', '--pending'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg', '--remove', '--pending'] 0m50.5s INFO: Running scripts post_test 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_test_exceptions'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'tmp/scripts/post_test_exceptions'] 0m50.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m51.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg-divert', '--list'] 0m51.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'dpkg-divert', '--list'] 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'clean'] 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i', 'apt-get', 'clean'] 0m51.0s DEBUG: Recording chroot state 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/shm'] 0m52.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/shm'] 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/console'] 0m52.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/console'] 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/ptmx'] 0m52.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/ptmx'] 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/pts'] 0m52.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/dev/pts'] 0m52.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/proc'] 0m52.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i/proc'] 0m52.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m52.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmppcbtpb6i'] 0m52.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmppcbtpb6i 0m52.9s INFO: PASS: Upgrading between Debian distributions. 0m52.9s INFO: PASS: All tests. 0m52.9s INFO: piuparts run ends. ret=0 End: 2024-08-21 19:07:40 GMT