Start: 2024-08-23 11:10:53 GMT [bookworm] Package: python3-mdtraj Source: mdtraj Version: 1.9.7-6 Installed-Size: 4459 Maintainer: Debichem Team Architecture: amd64 Depends: python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3 (<< 3.12), python3 (>= 3.11~), python3-astunparse, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11), zlib1g (>= 1:1.2.0), python3-distutils, python3-networkx, python3-pandas, python3-tables Suggests: python-mdtraj-doc Description: Read, write and analyze MD trajectories in Python Homepage: http://mdtraj.org/ Description-md5: 04d7dbec187003c6a29c313a28d81a7b Section: python Priority: optional Filename: pool/main/m/mdtraj/python3-mdtraj_1.9.7-6_amd64.deb Size: 1056644 MD5sum: 6d261bf48bf818c0db0d465bce26f738 SHA256: cabf25d83f9472d2f417bac90dd81d6ab3a29c73a5338008ac40cd0fd38ec35c [bookworm-next] Package: python3-mdtraj Source: mdtraj Version: 1.9.7-6 Installed-Size: 4459 Maintainer: Debichem Team Architecture: amd64 Depends: python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3 (<< 3.12), python3 (>= 3.11~), python3-astunparse, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11), zlib1g (>= 1:1.2.0), python3-distutils, python3-networkx, python3-pandas, python3-tables Suggests: python-mdtraj-doc Description: Read, write and analyze MD trajectories in Python Homepage: http://mdtraj.org/ Description-md5: 04d7dbec187003c6a29c313a28d81a7b Section: python Priority: optional Filename: pool/main/m/mdtraj/python3-mdtraj_1.9.7-6_amd64.deb Size: 1056644 MD5sum: 6d261bf48bf818c0db0d465bce26f738 SHA256: cabf25d83f9472d2f417bac90dd81d6ab3a29c73a5338008ac40cd0fd38ec35c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt python3-mdtraj=1.9.7-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201642~1.4.3-11-g36a88c35 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt python3-mdtraj=1.9.7-6 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxl15f9cs 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxl15f9cs 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxl15f9cs/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'update'] 0m1.1s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'update'] 0m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-yf', 'dist-upgrade'] 0m1.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-yf', 'dist-upgrade'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.0s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.0s INFO: Running scripts post_setup 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_dummy_users'] 0m2.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_dummy_users'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_forbid_home'] 0m2.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_forbid_home'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_minimize'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_minimize'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_zz_backports'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_setup_zz_backports'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.9s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m2.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m3.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m3.3s INFO: Running scripts is_testable 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/is_testable_uninstallable'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/is_testable_uninstallable'] 0m3.4s INFO: Running scripts pre_test 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_test_exceptions'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_test_exceptions'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_test_root_password'] 0m3.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_test_root_password'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'show', '--no-all-versions', 'python3-mdtraj'] 0m3.6s DUMP: Package: python3-mdtraj Source: mdtraj Version: 1.9.7-6 Installed-Size: 4459 Maintainer: Debichem Team Architecture: amd64 Depends: python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3 (<< 3.12), python3 (>= 3.11~), python3-astunparse, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11), zlib1g (>= 1:1.2.0), python3-distutils, python3-networkx, python3-pandas, python3-tables Suggests: python-mdtraj-doc Description-en: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . This package installs the library for Python 3, together with the command line utilities mdconvert-mdtraj and mdinspect. Description-md5: 04d7dbec187003c6a29c313a28d81a7b Homepage: http://mdtraj.org/ Section: python Priority: optional Filename: pool/main/m/mdtraj/python3-mdtraj_1.9.7-6_amd64.deb Size: 1056644 MD5sum: 6d261bf48bf818c0db0d465bce26f738 SHA256: cabf25d83f9472d2f417bac90dd81d6ab3a29c73a5338008ac40cd0fd38ec35c 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'show', '--no-all-versions', 'python3-mdtraj'] 0m3.6s INFO: apt-cache knows about the following packages: python3-mdtraj 0m3.6s INFO: Running scripts pre_install 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy'] 0m3.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy', 'python3-mdtraj'] 0m3.7s DUMP: python3-mdtraj: Installed: (none) Candidate: 1.9.7-6 Version table: 1.9.7-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy', 'python3-mdtraj'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-y', 'install', 'python3-mdtraj'] 0m31.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzo2-2 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python-tables-data python3 python3-all python3-all-dev python3-astunparse python3-beniget python3-dateutil python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-minimal python3-networkx python3-numexpr python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-ply python3-pyparsing python3-pythran python3-scipy python3-six python3-tables python3-tables-lib python3-tz python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc krb5-doc krb5-user libstdc++-12-doc libxsimd-doc python3-doc python3-tk python3-venv python-mdtraj-doc gfortran python3-pytest python-pandas-doc python3-statsmodels python3-setuptools python-ply-doc python-pyparsing-doc python-scipy-doc python3-netcdf4 python-tables-doc vitables python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: manpages manpages-dev libc-devtools ca-certificates javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-yaml python3-bottleneck python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-jinja2 python3-numba python3-pil The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzo2-2 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python-tables-data python3 python3-all python3-all-dev python3-astunparse python3-beniget python3-dateutil python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-mdtraj python3-minimal python3-networkx python3-numexpr python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-ply python3-pyparsing python3-pythran python3-scipy python3-six python3-tables python3-tables-lib python3-tz python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. Need to get 140 MB of archives. After this operation, 753 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:36 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:40 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:47 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:48 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u7 [45.8 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.94-1 [1994 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u7 [1899 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:57 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:58 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libsnappy1v5 amd64 1.1.9-3 [26.0 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libblosc1 amd64 1.21.3+ds-1 [49.3 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:64 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u6 [390 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:76 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u2 [1987 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u2 [4742 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:91 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:92 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python-tables-data all 3.7.0-5 [47.2 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u2 [615 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-astunparse all 1.6.3-2 [13.8 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-numexpr amd64 2.8.4-1+b2 [92.2 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-tables-lib amd64 3.7.0-5+b1 [378 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-tables all 3.7.0-5 [339 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-mdtraj amd64 1.9.7-6 [1057 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 140 MB in 1s (214 MB/s) Selecting previously unselected package libssl3:amd64. 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Preparing to unpack .../84-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../85-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../86-python3-pyparsing_3.0.9-1_all.deb ... Unpacking python3-pyparsing (3.0.9-1) ... Selecting previously unselected package python3-ply. Preparing to unpack .../87-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../88-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../89-python3-scipy_1.10.1-2_amd64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-networkx. 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Selecting previously unselected package python3-tables-lib. Preparing to unpack .../96-python3-tables-lib_3.7.0-5+b1_amd64.deb ... Unpacking python3-tables-lib (3.7.0-5+b1) ... Selecting previously unselected package python3-tables. Preparing to unpack .../97-python3-tables_3.7.0-5_all.deb ... Unpacking python3-tables (3.7.0-5) ... Selecting previously unselected package python3-mdtraj. Preparing to unpack .../98-python3-mdtraj_1.9.7-6_amd64.deb ... Unpacking python3-mdtraj (1.9.7-6) ... Setting up media-types (10.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up linux-libc-dev:amd64 (6.1.94-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libaec0:amd64 (1.0.6-1+b1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libsnappy1v5:amd64 (1.1.9-3) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libblosc1:amd64 (1.21.3+ds-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1.1) ... Setting up libc-dev-bin (2.36-9+deb12u7) ... Setting up readline-common (8.2-1.3) ... Setting up python-tables-data (3.7.0-5) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up libgprofng0:amd64 (2.40-2) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u6) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up binutils (2.40-2) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u7) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-astunparse (1.6.3-2) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6+deb12u2) ... Setting up python3-tables-lib (3.7.0-5+b1) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numexpr (2.8.4-1+b2) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-tables (3.7.0-5) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-mdtraj (1.9.7-6) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-y', 'install', 'python3-mdtraj'] 0m31.6s INFO: Running scripts post_install 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_install_exceptions'] 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_install_exceptions'] 0m31.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m33.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m33.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpxl15f9cs to bookworm-next 0m33.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 0m33.4s INFO: Running scripts pre_distupgrade 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'update'] 0m34.6s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://security.debian.org bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:5 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:6 http://security.debian.org bookworm-security/main Translation-en [106 kB] Get:7 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:8 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [111 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [64.5 kB] Fetched 650 kB in 1s (1079 kB/s) Reading package lists... 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'update'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-yf', 'dist-upgrade'] 0m38.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl3 libsystemd0 libudev1 linux-libc-dev python3-numpy 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 15.3 MB of archives. After this operation, 1593 kB disk space will be freed. Get:1 http://security.debian.org bookworm-security/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:2 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6-dev amd64 2.36-9+deb12u8 [1900 kB] Get:3 http://security.debian.org bookworm-security/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:4 http://security.debian.org bookworm-security/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:5 http://security.debian.org bookworm-security/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:6 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-dev-bin amd64 2.36-9+deb12u8 [46.3 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 linux-libc-dev amd64 6.1.106-2 [2027 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:11 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] Get:12 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libssl3 amd64 3.0.14-1~deb12u1 [2024 kB] Get:13 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 python3-numpy amd64 1:1.24.2-1+deb12u1 [4960 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.3 MB in 0s (127 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34015 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.36-9+deb12u8_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Preparing to unpack .../libc-dev-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-dev-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Preparing to unpack .../linux-libc-dev_6.1.106-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.1.106-2) over (6.1.94-1) ... Preparing to unpack .../libc6_2.36-9+deb12u8_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34015 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc-bin (2.36-9+deb12u8) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34015 files and directories currently installed.) Preparing to unpack .../libudev1_252.29-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34015 files and directories currently installed.) Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../1-libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libssl3_3.0.14-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.14-1~deb12u1) over (3.0.13-1~deb12u1) ... Preparing to unpack .../5-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1+deb12u1) over (1:1.24.2-1) ... Setting up libssl3:amd64 (3.0.14-1~deb12u1) ... Setting up linux-libc-dev:amd64 (6.1.106-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up python3-numpy (1:1.24.2-1+deb12u1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up libc-dev-bin (2.36-9+deb12u8) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u8) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-yf', 'dist-upgrade'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m39.5s DUMP: a7383adc5fdea12f93db4552c396e73a - 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'show', '--no-all-versions', 'python3-mdtraj'] 0m39.8s DUMP: Package: python3-mdtraj Source: mdtraj Version: 1.9.7-6 Installed-Size: 4459 Maintainer: Debichem Team Architecture: amd64 Depends: python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3 (<< 3.12), python3 (>= 3.11~), python3-astunparse, python3-pyparsing, python3-scipy, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11), zlib1g (>= 1:1.2.0), python3-distutils, python3-networkx, python3-pandas, python3-tables Suggests: python-mdtraj-doc Description-en: Read, write and analyze MD trajectories in Python Read, write and analyze MD trajectories with only a few lines of Python code. . MDTraj is a python library that allows users to manipulate molecular dynamics (MD) trajectories. Features include: * Wide MD format support, including pdb, xtc, trr, dcd, binpos, netcdf, mdcrd, prmtop, and more. * Extremely fast RMSD calculations (4x the speed of the original Theobald QCP). * Extensive analysis functions including those that compute bonds, angles, dihedrals, hydrogen bonds, secondary structure, and NMR observables. * Lightweight, Pythonic API. . MDTraj includes a command-line application, mdconvert-mdtraj, for converting trajectories between formats. . This package installs the library for Python 3, together with the command line utilities mdconvert-mdtraj and mdinspect. Description-md5: 04d7dbec187003c6a29c313a28d81a7b Homepage: http://mdtraj.org/ Section: python Priority: optional Filename: pool/main/m/mdtraj/python3-mdtraj_1.9.7-6_amd64.deb Size: 1056644 MD5sum: 6d261bf48bf818c0db0d465bce26f738 SHA256: cabf25d83f9472d2f417bac90dd81d6ab3a29c73a5338008ac40cd0fd38ec35c 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'show', '--no-all-versions', 'python3-mdtraj'] 0m39.8s INFO: apt-cache knows about the following packages: python3-mdtraj 0m39.8s INFO: Running scripts pre_install 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_database-server'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_database-server'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_exceptions'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_exceptions'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_extras'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_extras'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy'] 0m39.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy'] 0m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy', 'python3-mdtraj'] 0m40.0s DUMP: python3-mdtraj: Installed: 1.9.7-6 Candidate: 1.9.7-6 Version table: *** 1.9.7-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy', 'python3-mdtraj'] 0m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-y', 'install', 'python3-mdtraj'] 0m40.3s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-mdtraj is already the newest version (1.9.7-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-y', 'install', 'python3-mdtraj'] 0m40.3s INFO: Running scripts post_install 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_install_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_install_exceptions'] 0m40.3s INFO: Running scripts post_distupgrade 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_exceptions'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_zz_backports'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_distupgrade_zz_backports'] 0m40.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m41.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m41.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m43.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m43.7s INFO: Running scripts pre_install 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_database-server'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_database-server'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_exceptions'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_exceptions'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_extras'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_extras'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m43.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy'] 0m43.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy', 'python3-mdtraj'] 0m43.8s DUMP: python3-mdtraj: Installed: 1.9.7-6 Candidate: 1.9.7-6 Version table: *** 1.9.7-6 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-cache', 'policy', 'python3-mdtraj'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-y', 'install', 'python3-mdtraj=1.9.7-6'] 0m44.2s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-mdtraj is already the newest version (1.9.7-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', '-y', 'install', 'python3-mdtraj=1.9.7-6'] 0m44.2s INFO: Running scripts post_install 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_install_exceptions'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_install_exceptions'] 0m44.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m45.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 0m46.2s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m46.2s INFO: /bin converted to /usr/bin by /usr merge 0m46.2s INFO: /lib converted to /usr/lib by /usr merge 0m46.2s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m46.2s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m46.2s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m46.2s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m46.2s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m46.2s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m46.2s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m46.3s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m46.3s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m46.3s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m46.3s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m46.3s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m46.3s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m46.3s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m46.3s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m46.3s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m46.3s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m46.3s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m46.3s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m46.3s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m46.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m46.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m46.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m46.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m46.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m46.3s INFO: /sbin converted to /usr/sbin by /usr merge 0m48.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', '-ac', '--ignore-obsolete'] 0m52.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', '-ac', '--ignore-obsolete'] 0m52.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m52.2s DUMP: 0.15.6 0m52.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m52.2s INFO: Running adequate version 0.15.6 now. 0m52.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'python3-mdtraj'] 0m52.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'python3-mdtraj'] 0m52.3s INFO: Running scripts pre_remove 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_exceptions'] 0m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/pre_remove_exceptions'] 0m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m56.3s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed binutils binutils 2.40-2 install ok installed binutils-common:amd64 binutils-common 2.40-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.40-2 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-3 install ok installed cpp-12 cpp-12 12.2.0-14 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed g++ g++ 4:12.2.0-3 install ok installed g++-12 g++-12 12.2.0-14 install ok installed gcc gcc 4:12.2.0-3 install ok installed gcc-12 gcc-12 12.2.0-14 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libaec0:amd64 libaec0 1.0.6-1+b1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libasan8:amd64 libasan8 12.2.0-14 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libbinutils:amd64 libbinutils 2.40-2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libblosc1:amd64 libblosc1 1.21.3+ds-1 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-21 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc-dev-bin libc-dev-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libc6-dev:amd64 libc6-dev 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-14 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.40-2 install ok installed libctf0:amd64 libctf0 2.40-2 install ok installed libcurl4:amd64 libcurl4 7.88.1-10+deb12u6 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-14 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.40-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.8+repack1-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libisl23:amd64 libisl23 0.25-1.1 install ok installed libitm1:amd64 libitm1 12.2.0-14 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblsan0:amd64 liblsan0 12.2.0-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.2-1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11:amd64 libpython3.11 3.11.2-6+deb12u2 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.2-6+deb12u2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.9-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.14-1~deb12u1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-14 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libsz2:amd64 libsz2 1.0.6-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtsan2:amd64 libtsan2 12.2.0-14 install ok installed libubsan1:amd64 libubsan1 12.2.0-14 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.1.106-2 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed python-tables-data python-tables-data 3.7.0-5 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-all python3-all 3.11.2-1+b1 install ok installed python3-all-dev python3-all-dev 3.11.2-1+b1 install ok installed python3-astunparse python3-astunparse 1.6.3-2 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-dateutil python3-dateutil 2.8.2-2 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.11.2-1+b1 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-mdtraj python3-mdtraj 1.9.7-6 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-numexpr python3-numexpr 2.8.4-1+b2 install ok installed python3-numpy python3-numpy 1:1.24.2-1+deb12u1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-pandas python3-pandas 1.5.3+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.5.3+dfsg-2 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-scipy python3-scipy 1.10.1-2 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tables python3-tables 3.7.0-5 install ok installed python3-tables-lib python3-tables-lib 3.7.0-5+b1 install ok installed python3-tz python3-tz 2022.7.1-4 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-dev python3.11-dev 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed readline-common readline-common 8.2-1.3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 0m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-astunparse', 'python3-beniget', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-scipy', 'python3-six', 'python3-tables', 'python3-tables-lib', 'python3-tz', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'python3-mdtraj'] 1m0.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzo2-2 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsnappy1v5 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev linux-libc-dev media-types python-tables-data python3 python3-all python3-all-dev python3-astunparse python3-beniget python3-dateutil python3-decorator python3-dev python3-distutils python3-gast python3-lib2to3 python3-mdtraj python3-minimal python3-networkx python3-numexpr python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-ply python3-pyparsing python3-pythran python3-scipy python3-six python3-tables python3-tables-lib python3-tz python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev 0 upgraded, 0 newly installed, 120 to remove and 0 not upgraded. After this operation, 752 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34015 files and directories currently installed.) Removing python3-mdtraj (1.9.7-6) ... Removing python3-scipy (1.10.1-2) ... Removing python3-pythran (0.11.0+ds-7) ... Removing g++ (4:12.2.0-3) ... Removing gcc (4:12.2.0-3) ... Removing cpp (4:12.2.0-3) ... Removing g++-12 (12.2.0-14) ... Removing python3-tables (3.7.0-5) ... Removing python3-tables-lib (3.7.0-5+b1) ... Removing libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Removing libsz2:amd64 (1.0.6-1+b1) ... Removing libaec0:amd64 (1.0.6-1+b1) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Removing libstdc++-12-dev:amd64 (12.2.0-14) ... Removing python3-pandas (1.5.3+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Removing python3-numexpr (2.8.4-1+b2) ... Removing python3-numpy (1:1.24.2-1+deb12u1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libblosc1:amd64 (1.21.3+ds-1) ... Removing libcurl4:amd64 (7.88.1-10+deb12u6) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing python3-all-dev (3.11.2-1+b1) ... Removing python3-dev (3.11.2-1+b1) ... Removing python3.11-dev (3.11.2-6+deb12u2) ... Removing libpython3-all-dev:amd64 (3.11.2-1+b1) ... Removing libpython3-dev:amd64 (3.11.2-1+b1) ... Removing libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-9+deb12u8) ... Removing libc-dev-bin (2.36-9+deb12u8) ... Removing libcrypt-dev:amd64 (1:4.4.33-2) ... Removing python3-all (3.11.2-1+b1) ... Removing python3-distutils (3.11.2-3) ... Removing python3-dateutil (2.8.2-2) ... Removing libpython3.11:amd64 (3.11.2-6+deb12u2) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libjs-sphinxdoc (5.3.0-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing liblzo2-2:amd64 (2.10-2) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libsnappy1v5:amd64 (1.1.9-3) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing linux-libc-dev:amd64 (6.1.106-2) ... Removing python-tables-data (3.7.0-5) ... Removing python3-astunparse (1.6.3-2) ... Removing python3-beniget (0.4.1-3) ... Removing python3-decorator (5.1.1-3) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-networkx (2.8.8-1) ... Removing python3-packaging (23.0-1) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-ply (3.11-5) ... Removing python3-pyparsing (3.0.9-1) ... Removing python3-tz (2022.7.1-4) ... Removing rpcsvc-proto (1.4.3-1) ... Removing gcc-12 (12.2.0-14) ... Removing binutils (2.40-2) ... Removing binutils-x86-64-linux-gnu (2.40-2) ... Removing libgprofng0:amd64 (2.40-2) ... Removing libctf0:amd64 (2.40-2) ... Removing libbinutils:amd64 (2.40-2) ... Removing binutils-common:amd64 (2.40-2) ... Removing cpp-12 (12.2.0-14) ... Removing libgcc-12-dev:amd64 (12.2.0-14) ... Removing libasan8:amd64 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libcc1-0:amd64 (12.2.0-14) ... Removing libctf-nobfd0:amd64 (2.40-2) ... Removing python3-six (1.16.0-4) ... Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libisl23:amd64 (0.25-1.1) ... Removing libitm1:amd64 (12.2.0-14) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-14) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (12.2.0-14) ... Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing libtsan2:amd64 (12.2.0-14) ... Removing libubsan1:amd64 (12.2.0-14) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing libssl3:amd64 (3.0.14-1~deb12u1) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-astunparse', 'python3-beniget', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-scipy', 'python3-six', 'python3-tables', 'python3-tables-lib', 'python3-tz', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64', 'python3-mdtraj'] 1m0.7s INFO: Running scripts post_remove 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_remove_exceptions'] 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_remove_exceptions'] 1m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-astunparse', 'python3-beniget', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-scipy', 'python3-six', 'python3-tables', 'python3-tables-lib', 'python3-tz', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m0.8s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 6098 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.40-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.0.0) ... dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-astunparse which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-12', 'g++', 'g++-12', 'gcc', 'gcc-12', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'linux-libc-dev:amd64', 'media-types', 'python-tables-data', 'python3', 'python3-all', 'python3-all-dev', 'python3-astunparse', 'python3-beniget', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-gast', 'python3-lib2to3', 'python3-minimal', 'python3-networkx', 'python3-numexpr', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-pyparsing', 'python3-pythran', 'python3-scipy', 'python3-six', 'python3-tables', 'python3-tables-lib', 'python3-tz', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'readline-common', 'rpcsvc-proto', 'zlib1g-dev:amd64'] 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--purge', 'python3-mdtraj'] 1m0.8s DUMP: dpkg: warning: ignoring request to remove python3-mdtraj which isn't installed 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--purge', 'python3-mdtraj'] 1m0.8s INFO: Running scripts post_purge 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_purge_exceptions'] 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_purge_exceptions'] 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--purge', '--pending'] 1m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--purge', '--pending'] 1m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--remove', '--pending'] 1m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg', '--remove', '--pending'] 1m0.9s INFO: Running scripts post_test 1m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_test_exceptions'] 1m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'tmp/scripts/post_test_exceptions'] 1m0.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 1m1.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg-divert', '--list'] 1m1.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'dpkg-divert', '--list'] 1m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'clean'] 1m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs', 'apt-get', 'clean'] 1m1.4s DEBUG: Recording chroot state 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/shm'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/shm'] 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/console'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/console'] 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/ptmx'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/ptmx'] 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/pts'] 1m2.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/dev/pts'] 1m2.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/proc'] 1m2.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs/proc'] 1m2.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 1m2.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxl15f9cs'] 1m2.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxl15f9cs 1m2.5s INFO: PASS: Upgrading between Debian distributions. 1m2.5s INFO: PASS: All tests. 1m2.5s INFO: piuparts run ends. ret=0 End: 2024-08-23 11:11:56 GMT