Start: 2024-08-22 17:06:22 GMT [bookworm] Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb [bookworm-next] Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt qcumber=2.3.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201135~1.4.3-10-g39df1906 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt qcumber=2.3.0-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpxxlkcq6s 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpxxlkcq6s 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpxxlkcq6s/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 0m4.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s INFO: Running scripts pre_test 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 0m4.7s DUMP: Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description-en: quality control of genomic sequences QCPipeline is a tool for quality control. The workflow is as follows: . 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken Description-md5: 380ba80499911de0a248a18cb1009872 Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 0m4.7s INFO: apt-cache knows about the following packages: qcumber 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy'] 0m4.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy', 'qcumber'] 0m4.9s DUMP: qcumber: Installed: (none) Candidate: 2.3.0-2 Version table: 2.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy', 'qcumber'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-y', 'install', 'qcumber'] 3m57.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-12 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gir1.2-glib-2.0 git git-man libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.36 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 linux-libc-dev littler media-types openssl perl perl-modules-5.36 python-matplotlib-data python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-contourpy python3-cryptography python3-cycler python3-dateutil python3-datrie python3-decorator python3-dev python3-distutils python3-docutils python3-fastjsonschema python3-fonttools python3-frozenlist python3-fs python3-gast python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-marshmallow python3-matplotlib python3-minimal python3-mpmath python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-numpy python3-oauthlib python3-packaging python3-paramiko python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-pythran python3-ratelimiter python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-scipy python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-ufolib2 python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-dev python3.11-minimal r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-sparsem r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common rpcsvc-proto sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-12-locales cpp-12-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc gdbm-l10n low-memory-monitor krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils libstdc++-12-doc tcl8.6 tk8.6 libxsimd-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-venv python-attr-doc python-azure-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-blinker-doc python-cryptography-doc python3-cryptography-vectors python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip python3-crypto python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-nacl-doc gfortran python3-pytest python3-gssapi python-pil-doc python3-setuptools python-ply-doc python-psutil-doc subversion python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-openssl python3-socks python-requests-doc python-scipy-doc python3-nose texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-cairo r-cran-testthat r-cran-bradleyterry2 r-cran-covr r-cran-ellipse r-cran-gam r-cran-knitr r-cran-mlbench r-cran-party r-cran-pls r-cran-randomforest r-cran-rann r-cran-rmarkdown r-cran-callr r-cran-crayon r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-bench r-cran-desc r-cran-lobstr r-cran-bit64 r-cran-bit r-cran-curl r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-yaml r-cran-unitizer r-cran-r.rsp r-cran-markdown r-cran-profvis r-cran-rgeos r-cran-dbi r-cran-forcats r-cran-rsqlite r-cran-waldo r-cran-tinytest r-cran-th.data r-cran-magick r-cran-sf r-bioc-graph r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-base64enc r-cran-r.devices r-cran-formattable r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-doparallel r-cran-itertools r-cran-pbmcapply r-cran-progress r-cran-furrr r-cran-commonmark r-cran-inline r-cran-splines2 r-cran-fs r-cran-usethis r-cran-dichromat r-cran-blob r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-readr r-cran-pkgdown r-cran-zeallot readline-doc sgml-base-doc slurm-client snakemake-doc debhelper Recommended packages: patch less ssh-client manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules netbase python-biopython-doc ncbi-blast+ python3-pygments python3-babel python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-html5lib python3-invoke python3-olefile isympy-common r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-earth r-cran-mda r-cran-mlmetrics r-cran-fastica r-cran-kernlab r-cran-themis r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio r-cran-progress r-cran-bench r-cran-broom r-cran-callr r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-lobstr r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-crayon r-cran-devtools r-cran-modeldata r-cran-roxygen2 r-cran-usethis r-cran-mlbench r-cran-ellipse r-cran-fields r-cran-geepack r-cran-bookdown r-cran-igraph r-cran-lavasearch2 r-cran-lme4 r-cran-mets r-cran-optimx r-cran-polycor r-cran-rgl r-cran-r.rsp r-cran-zoo r-cran-runit r-cran-domc r-cran-abind r-cran-logcondens r-cran-cba r-cran-httr r-cran-ddalpha r-cran-dimred r-cran-pls r-cran-rcpproll r-cran-rsample r-cran-rspectra r-cran-rann r-cran-bit64 r-cran-hms r-cran-setrng r-cran-htmltools r-cran-htmlwidgets r-cran-mockr r-cran-formattable r-cran-waldo cwltool imagemagick python3-yappi python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-12 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gir1.2-glib-2.0 git git-man libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.36 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 linux-libc-dev littler media-types openssl perl perl-modules-5.36 python-matplotlib-data python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-contourpy python3-cryptography python3-cycler python3-dateutil python3-datrie python3-decorator python3-dev python3-distutils python3-docutils python3-fastjsonschema python3-fonttools python3-frozenlist python3-fs python3-gast python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-marshmallow python3-matplotlib python3-minimal python3-mpmath python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-numpy python3-oauthlib python3-packaging python3-paramiko python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-pythran python3-ratelimiter python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-scipy python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-ufolib2 python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-dev python3.11-minimal qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-sparsem r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common rpcsvc-proto sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip zlib1g-dev 0 upgraded, 387 newly installed, 0 to remove and 0 not upgraded. Need to get 341 MB of archives. After this operation, 1893 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:16 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.13-1~deb12u1 [1418 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u3 [398 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:51 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-2 [440 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 coinor-libclp1 amd64 1.17.6-3 [843 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-4 [409 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 coinor-libcbc3 amd64 2.10.8+ds1-1 [715 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 coinor-cbc amd64 2.10.8+ds1-1 [14.8 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:82 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:91 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:97 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:98 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u7 [45.8 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.94-1 [1994 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u7 [1899 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:107 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:108 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u3 [1400 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.74.0-3 [101 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.74.0-3 [159 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u6 [385 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 git-man all 1:2.39.2-1.1 [2049 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 git amd64 1:2.39.2-1.1 [7171 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:124 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u6 [390 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libjs-angularjs all 1.8.3-1 [817 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:161 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u2 [1987 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u2 [4742 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:165 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:166 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-2 [26.0 MB] Get:183 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.17-1 [96.3 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.17-1 [14.4 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 python3-cryptography amd64 38.0.4-3 [666 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 python3-jwt all 2.6.0-1 [26.6 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 python3-adal all 1.2.7-2 [32.1 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 python3-multidict amd64 6.0.4-1+b1 [31.6 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 python3-yarl amd64 1.8.2-1+b1 [49.8 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 python3-async-timeout all 4.0.2-1 [7476 B] Get:203 http://deb.debian.org/debian bookworm/main amd64 python3-frozenlist amd64 1.3.3-1+b1 [30.0 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 python3-aiosignal all 1.3.1-1 [6016 B] Get:205 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 python3-aiohttp amd64 3.8.4-1 [251 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:210 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u2 [615 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:213 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 python3-blinker all 1.5-1 [14.7 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 python3-oauthlib all 3.2.2-1 [95.4 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 python3-requests-oauthlib all 1.3.0+ds-1 [20.7 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 python3-msrest all 0.6.21-2 [48.0 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 python3-msrestazure all 0.6.4-2 [26.4 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 python3-azure-storage all 20230112+git-1 [280 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 python3-marshmallow all 3.18.0-1 [66.3 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 python3-msal all 1.21.0-1 [85.9 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 python3-gi amd64 3.42.2-3+b1 [219 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 python3-portalocker all 2.2.1-1 [18.5 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 python3-msal-extensions all 1.0.0-2 [16.9 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 python3-strictyaml all 1.6.1-3 [92.9 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 python3-uamqp amd64 1.5.3-1+b4 [647 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 python3-azure all 20230112+git-1 [11.9 MB] Get:238 http://deb.debian.org/debian bookworm/main amd64 python3-bcrypt amd64 3.2.2-1 [32.2 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:240 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:241 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+deb12u1 [74.2 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 python3-botocore all 1.29.27+repack-1 [5502 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 python3-boto3 all 1.26.27+dfsg-1 [187 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 python3-configargparse all 1.5.3-1 [26.1 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:257 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:259 http://deb.debian.org/debian bookworm/main amd64 python3-datrie amd64 0.8.2-4+b1 [97.7 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get:262 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 python3-fastjsonschema all 2.16.3-2 [21.6 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:267 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 python3-smmap all 5.0.0-1 [21.0 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 python3-gitdb all 4.0.9-2 [45.7 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 python3-git all 3.1.30-1+deb12u2 [135 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 python3-humanfriendly all 10.0-3 [85.2 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 python3-jupyter-core all 4.12.0-1 [27.3 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 python3-nacl amd64 1.5.0-2 [59.3 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 python3-nbformat all 5.5.0-1 [43.2 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 python3-paramiko all 2.12.0-2 [133 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 python3-pulp all 2.6.0+dfsg-1 [66.0 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 python3-ratelimiter amd64 1.2.0.post0-4 [5740 B] Get:294 http://deb.debian.org/debian bookworm/main amd64 python3-retry all 0.9.2-2 [7020 B] Get:295 http://deb.debian.org/debian bookworm/main amd64 python3-smart-open all 5.2.1-5 [87.9 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 python3-stopit all 1.1.2-2 [12.6 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 python3-throttler all 1.2.2-2 [7072 B] Get:299 http://deb.debian.org/debian bookworm/main amd64 python3-toposort all 1.9-1 [7272 B] Get:300 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.6.0-1 [1287 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.6-1 [1618 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 r-cran-mass amd64 7.3-58.2-1 [1121 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 r-cran-nlme amd64 3.1.162-1 [2260 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.5-3-1 [3822 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 r-cran-mgcv amd64 1.8-41-1 [3171 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 r-cran-farver amd64 2.1.1-1 [1404 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1692 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 r-cran-viridislite all 0.4.1-1 [1299 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 r-cran-scales all 1.2.1-1 [614 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 r-cran-fansi amd64 1.0.4-1 [619 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 r-cran-utf8 amd64 1.2.3-1 [133 kB] Get:324 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.5.2-1 [1371 kB] Get:325 http://deb.debian.org/debian bookworm/main amd64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get:326 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:327 http://deb.debian.org/debian bookworm/main amd64 r-cran-tibble amd64 3.1.8+dfsg-1 [513 kB] Get:328 http://deb.debian.org/debian bookworm/main amd64 r-cran-withr all 2.5.0-1 [236 kB] Get:329 http://deb.debian.org/debian bookworm/main amd64 r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB] Get:330 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get:331 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.10-1 [2059 kB] Get:332 http://deb.debian.org/debian bookworm/main amd64 r-cran-plyr amd64 1.8.8-1 [832 kB] Get:333 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringi amd64 1.7.12-1 [858 kB] Get:334 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringr all 1.5.0-1 [295 kB] Get:335 http://deb.debian.org/debian bookworm/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:336 http://deb.debian.org/debian bookworm/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:337 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml amd64 3.99-0.13-1 [1717 kB] Get:338 http://deb.debian.org/debian bookworm/main amd64 r-bioc-savr all 1.36.0-2 [608 kB] Get:339 http://deb.debian.org/debian bookworm/main amd64 r-cran-sparsem amd64 1.81-1 [905 kB] Get:340 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixmodels all 0.5-1-1 [375 kB] Get:341 http://deb.debian.org/debian bookworm/main amd64 r-cran-survival amd64 3.5-3-1 [5910 kB] Get:342 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixstats amd64 0.63.0-1 [470 kB] Get:343 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpparmadillo amd64 0.12.0.1.0-1 [841 kB] Get:344 http://deb.debian.org/debian bookworm/main amd64 r-cran-class amd64 7.3-21-1 [86.7 kB] Get:345 http://deb.debian.org/debian bookworm/main amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] Get:346 http://deb.debian.org/debian bookworm/main amd64 r-cran-e1071 amd64 1.7-13-1 [568 kB] Get:347 http://deb.debian.org/debian bookworm/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB] Get:348 http://deb.debian.org/debian bookworm/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get:349 http://deb.debian.org/debian bookworm/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get:350 http://deb.debian.org/debian bookworm/main amd64 r-cran-data.table amd64 1.14.8+dfsg-1 [1683 kB] Get:351 http://deb.debian.org/debian bookworm/main amd64 r-cran-modelmetrics amd64 1.2.2.2-1+b1 [125 kB] Get:352 http://deb.debian.org/debian bookworm/main amd64 r-cran-proc amd64 1.18.0-1+b1 [983 kB] Get:353 http://deb.debian.org/debian bookworm/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:354 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [219 kB] Get:355 http://deb.debian.org/debian bookworm/main amd64 r-cran-dplyr amd64 1.0.10-1 [1227 kB] Get:356 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.3-1 [223 kB] Get:357 http://deb.debian.org/debian bookworm/main amd64 r-cran-tzdb amd64 0.3.0-1 [484 kB] Get:358 http://deb.debian.org/debian bookworm/main amd64 r-cran-clock amd64 0.6.1-2 [1768 kB] Get:359 http://deb.debian.org/debian bookworm/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get:360 http://deb.debian.org/debian bookworm/main amd64 r-cran-gower amd64 1.0.1-1 [207 kB] Get:361 http://deb.debian.org/debian bookworm/main amd64 r-cran-hardhat all 1.2.0+dfsg-1 [622 kB] Get:362 http://deb.debian.org/debian bookworm/main amd64 r-cran-rpart amd64 4.1.19-1 [917 kB] Get:363 http://deb.debian.org/debian bookworm/main amd64 r-cran-nnet amd64 7.3-18-1 [112 kB] Get:364 http://deb.debian.org/debian bookworm/main amd64 r-cran-kernsmooth amd64 2.23-20-1 [91.5 kB] Get:365 http://deb.debian.org/debian bookworm/main amd64 r-cran-digest amd64 0.6.31-1 [184 kB] Get:366 http://deb.debian.org/debian bookworm/main amd64 r-cran-globals all 0.16.2-1 [118 kB] Get:367 http://deb.debian.org/debian bookworm/main amd64 r-cran-listenv all 0.9.0+dfsg-1 [112 kB] Get:368 http://deb.debian.org/debian bookworm/main amd64 r-cran-parallelly all 1.34.0-1 [337 kB] Get:369 http://deb.debian.org/debian bookworm/main amd64 r-cran-future all 1.31.0+dfsg-1 [612 kB] Get:370 http://deb.debian.org/debian bookworm/main amd64 r-cran-future.apply all 1.10.0+dfsg-1 [165 kB] Get:371 http://deb.debian.org/debian bookworm/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get:372 http://deb.debian.org/debian bookworm/main amd64 r-cran-progressr all 0.13.0-1 [336 kB] Get:373 http://deb.debian.org/debian bookworm/main amd64 r-cran-squarem all 2021.1-1 [179 kB] Get:374 http://deb.debian.org/debian bookworm/main amd64 r-cran-lava all 1.7.2.1+dfsg-1 [2203 kB] Get:375 http://deb.debian.org/debian bookworm/main amd64 r-cran-prodlim amd64 2019.11.13-1+b1 [395 kB] Get:376 http://deb.debian.org/debian bookworm/main amd64 r-cran-ipred amd64 0.9-13-1 [386 kB] Get:377 http://deb.debian.org/debian bookworm/main amd64 r-cran-timechange amd64 0.2.0-1 [178 kB] Get:378 http://deb.debian.org/debian bookworm/main amd64 r-cran-lubridate amd64 1.9.2+dfsg-1 [994 kB] Get:379 http://deb.debian.org/debian bookworm/main amd64 r-cran-purrr amd64 1.0.1-1 [507 kB] Get:380 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyr amd64 1.3.0-1 [1183 kB] Get:381 http://deb.debian.org/debian bookworm/main amd64 r-cran-timedate amd64 4022.108-1 [1185 kB] Get:382 http://deb.debian.org/debian bookworm/main amd64 r-cran-recipes all 1.0.4+dfsg-1 [1871 kB] Get:383 http://deb.debian.org/debian bookworm/main amd64 r-cran-caret amd64 6.0-93+dfsg-1 [3447 kB] Get:384 http://deb.debian.org/debian bookworm/main amd64 r-cran-conquer amd64 1.3.2-1 [459 kB] Get:385 http://deb.debian.org/debian bookworm/main amd64 r-cran-quantreg amd64 5.94-1 [1535 kB] Get:386 http://deb.debian.org/debian bookworm/main amd64 snakemake all 7.21.0-1 [301 kB] Get:387 http://deb.debian.org/debian bookworm/main amd64 qcumber all 2.3.0-2 [50.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 341 MB in 8s (42.2 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up ucf (3.0043+nmu1) ... Setting up gir1.2-glib-2.0:amd64 (1.74.0-3) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u6) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Setting up binutils (2.40-2) ... Setting up libpaper-utils (1.1.29) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up coinor-libclp1:amd64 (1.17.6-3) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up gcc (4:12.2.0-3) ... Setting up liberror-perl (0.17029-2) ... Setting up coinor-cbc (2.10.8+ds1-1) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-squarem (2021.1-1) ... Setting up r-cran-gtable (0.3.1+dfsg-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up git (1:2.39.2-1.1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.162-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up r-cran-xml (3.99-0.13-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up r-cran-sparsem (1.81-1) ... Setting up libc6-dev:amd64 (2.36-9+deb12u7) ... Setting up r-cran-nnet (7.3-18-1) ... Setting up r-cran-proxy (0.4-27-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up r-cran-rcpp (1.0.10-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-rlang (1.0.6-1) ... Setting up r-cran-matrixstats (0.63.0-1) ... Setting up r-cran-listenv (0.9.0+dfsg-1) ... Setting up littler (0.3.17-1) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-digest (0.6.31-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up r-cran-gower (1.0.1-1) ... Setting up r-cran-timedate (4022.108-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-58.2-1) ... Setting up python3 (3.11.2-1+b1) ... Setting up r-cran-data.table (1.14.8+dfsg-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up r-cran-cli (3.6.0-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-multidict (6.0.4-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up r-cran-progressr (0.13.0-1) ... Setting up python3-frozenlist (1.3.3-1+b1) ... Setting up python3-aiosignal (1.3.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up python3-async-timeout (4.0.2-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up python3-packaging (23.0-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-parallelly (1.34.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up r-cran-stringi (1.7.12-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up r-cran-cpp11 (0.4.3-1) ... Setting up python3-jmespath (1.0.1-1) ... Setting up r-cran-plyr (1.8.8-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up python3-gi (3.42.2-3+b1) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up r-cran-kernsmooth (2.23-20-1) ... Setting up python3-fastjsonschema (2.16.3-2) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up r-cran-mgcv (1.8-41-1) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b3) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up r-cran-rcpparmadillo (0.12.0.1.0-1) ... Setting up python3-datrie:amd64 (0.8.2-4+b1) ... Setting up r-cran-tzdb (0.3.0-1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up r-cran-globals (0.16.2-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-yarl (1.8.2-1+b1) ... Setting up python3-smmap (5.0.0-1) ... Setting up r-cran-vctrs (0.5.2-1) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-blinker (1.5-1) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-toposort (1.9-1) ... Setting up python3-configargparse (1.5.3-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up r-cran-class (7.3-21-1) ... Setting up python3-py (1.11.0-1) ... Setting up r-cran-modelmetrics (1.2.2.2-1+b1) ... Setting up python3-jwt (2.6.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-pulp (2.6.0+dfsg-1) ... Setting up r-cran-matrixmodels (0.5-1-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up python3-gast (0.5.2-2) ... Setting up r-cran-clock (0.6.1-2) ... Setting up python3-aiohttp (3.8.4-1) ... Setting up python3-marshmallow (3.18.0-1) ... Setting up r-cran-proc (1.18.0-1+b1) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up r-cran-survival (3.5-3-1) ... Setting up python3-gitdb (4.0.9-2) ... Setting up python3-uamqp (1.5.3-1+b4) ... Setting up r-cran-future (1.31.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up python3-fs (2.4.16-2) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up r-cran-future.apply (1.10.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up r-cran-timechange (0.2.0-1) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Setting up python3-cryptography (38.0.4-3) ... Setting up python3-git (3.1.30-1+deb12u2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-lava (1.7.2.1+dfsg-1) ... Setting up r-cran-purrr (1.0.1-1) ... Setting up r-cran-e1071 (1.7-13-1) ... Setting up python3-retry (0.9.2-2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-adal (1.2.7-2) ... Setting up python3-stopit (1.1.2-2) ... Setting up r-cran-hardhat (1.2.0+dfsg-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-jupyter-core (4.12.0-1) ... Setting up python3-nacl (1.5.0-2) ... Setting up r-cran-lubridate (1.9.2+dfsg-1) ... Setting up r-cran-prodlim (2019.11.13-1+b1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6+deb12u2) ... Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ... Setting up r-cran-rpart (4.1.19-1) ... Setting up python3-msal (1.21.0-1) ... Setting up python3-msal-extensions (1.0.0-2) ... Setting up python3-nbformat (5.5.0-1) ... Setting up r-bioc-savr (1.36.0-2) ... Setting up r-cran-ipred (0.9-13-1) ... Setting up python3-strictyaml (1.6.1-3) ... Setting up python3-oauthlib (3.2.2-1) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-botocore (1.29.27+repack-1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up r-cran-tidyr (1.3.0-1) ... Setting up r-cran-recipes (1.0.4+dfsg-1) ... Setting up python3-paramiko (2.12.0-2) ... Setting up python3-requests-oauthlib (1.3.0+ds-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up r-cran-caret (6.0-93+dfsg-1) ... Setting up python3-msrest (0.6.21-2) ... Setting up r-cran-conquer (1.3.2-1) ... Setting up python3-boto3 (1.26.27+dfsg-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-msrestazure (0.6.4-2) ... Setting up python3-scipy (1.10.1-2) ... Setting up r-cran-quantreg (5.94-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-azure (20230112+git-1) ... Setting up python3-azure-storage (20230112+git-1) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-smart-open (5.2.1-5) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up snakemake (7.21.0-1) ... Setting up qcumber (2.3.0-2) ... ************************************************************************* * Minikraken DB is missing. Either move the according files to * * /var/lib/kraken/minikraken_20141208 * or call the script /usr/share/doc/qcumber/get-minikrakendb as root. * ************************************************************************* Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 3m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-y', 'install', 'qcumber'] 3m57.0s INFO: Running scripts post_install 3m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_install_exceptions'] 3m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_install_exceptions'] 3m57.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m0.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m0.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpxxlkcq6s to bookworm-next 4m0.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 4m0.9s INFO: Running scripts pre_distupgrade 4m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 4m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 4m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_exceptions'] 4m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_exceptions'] 4m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 4m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 4m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_zz_database-server'] 4m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_zz_database-server'] 4m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 4m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 4m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'update'] 4m3.1s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://security.debian.org bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:6 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:7 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:8 http://security.debian.org bookworm-security/main Translation-en [106 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [109 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [62.8 kB] Fetched 647 kB in 1s (559 kB/s) Reading package lists... 4m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'update'] 4m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-yf', 'dist-upgrade'] 4m11.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl3 libsystemd0 libudev1 linux-libc-dev openssl python3-numpy 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.8 MB of archives. After this operation, 1607 kB disk space will be freed. Get:1 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6-dev amd64 2.36-9+deb12u8 [1900 kB] Get:2 http://security.debian.org bookworm-security/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:3 http://security.debian.org bookworm-security/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:4 http://security.debian.org bookworm-security/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:5 http://security.debian.org bookworm-security/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:6 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-dev-bin amd64 2.36-9+deb12u8 [46.3 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 linux-libc-dev amd64 6.1.106-2 [2027 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:11 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] Get:12 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libssl3 amd64 3.0.13-1~deb12u2 [2023 kB] Get:13 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 openssl amd64 3.0.13-1~deb12u2 [1421 kB] Get:14 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 python3-numpy amd64 1:1.24.2-1+deb12u1 [4960 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.8 MB in 1s (26.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85409 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.36-9+deb12u8_amd64.deb ... Unpacking libc6-dev:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Preparing to unpack .../libc-dev-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-dev-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Preparing to unpack .../linux-libc-dev_6.1.106-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.1.106-2) over (6.1.94-1) ... Preparing to unpack .../libc6_2.36-9+deb12u8_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85409 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc-bin (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85409 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.29-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85409 files and directories currently installed.) Preparing to unpack .../libudev1_252.29-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85409 files and directories currently installed.) Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../1-libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libssl3_3.0.13-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.13-1~deb12u2) over (3.0.13-1~deb12u1) ... Preparing to unpack .../5-openssl_3.0.13-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.13-1~deb12u2) over (3.0.13-1~deb12u1) ... Preparing to unpack .../6-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1+deb12u1) over (1:1.24.2-1) ... Setting up libssl3:amd64 (3.0.13-1~deb12u2) ... Setting up linux-libc-dev:amd64 (6.1.106-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up python3-numpy (1:1.24.2-1+deb12u1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up libc-dev-bin (2.36-9+deb12u8) ... Setting up openssl (3.0.13-1~deb12u2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u8) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 4m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-yf', 'dist-upgrade'] 4m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m11.4s DUMP: 0bdc56bc83ae6d8c6f994c42aef2be7c - 4m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 4m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 4m11.6s DUMP: Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description-en: quality control of genomic sequences QCPipeline is a tool for quality control. The workflow is as follows: . 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken Description-md5: 380ba80499911de0a248a18cb1009872 Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb 4m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 4m11.6s INFO: apt-cache knows about the following packages: qcumber 4m11.6s INFO: Running scripts pre_install 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_database-server'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_database-server'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_exceptions'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_exceptions'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_extras'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_extras'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy'] 4m11.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 4m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy'] 4m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy', 'qcumber'] 4m11.8s DUMP: qcumber: Installed: 2.3.0-2 Candidate: 2.3.0-2 Version table: *** 2.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 4m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy', 'qcumber'] 4m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-y', 'install', 'qcumber'] 4m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... qcumber is already the newest version (2.3.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-y', 'install', 'qcumber'] 4m12.4s INFO: Running scripts post_install 4m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_install_exceptions'] 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_install_exceptions'] 4m12.4s INFO: Running scripts post_distupgrade 4m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_base_cleanup'] 4m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_exceptions'] 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_exceptions'] 4m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 4m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_squeeze-backports'] 4m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_zz_backports'] 4m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_distupgrade_zz_backports'] 4m12.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m16.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m19.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m19.6s INFO: Running scripts pre_install 4m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_database-server'] 4m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_database-server'] 4m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_exceptions'] 4m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_exceptions'] 4m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_extras'] 4m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_extras'] 4m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture'] 4m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture'] 4m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 4m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy'] 4m19.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 4m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy'] 4m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy', 'qcumber'] 4m19.7s DUMP: qcumber: Installed: 2.3.0-2 Candidate: 2.3.0-2 Version table: *** 2.3.0-2 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 4m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-cache', 'policy', 'qcumber'] 4m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-y', 'install', 'qcumber=2.3.0-2'] 4m20.5s DUMP: Reading package lists... Building dependency tree... Reading state information... qcumber is already the newest version (2.3.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 4m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', '-y', 'install', 'qcumber=2.3.0-2'] 4m20.5s INFO: Running scripts post_install 4m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_install_exceptions'] 4m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_install_exceptions'] 4m20.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m24.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 4m25.1s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 4m25.2s INFO: /bin converted to /usr/bin by /usr merge 4m25.2s INFO: /lib converted to /usr/lib by /usr merge 4m25.2s INFO: /lib/init converted to /usr/lib/init by /usr merge 4m25.2s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 4m25.2s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 4m25.2s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 4m25.2s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 4m25.2s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 4m25.2s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 4m25.2s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 4m25.2s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 4m25.2s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 4m25.2s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 4m25.2s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 4m25.2s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 4m25.2s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 4m25.2s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 4m25.2s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 4m25.2s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 4m25.2s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 4m25.2s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 4m25.2s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 4m25.2s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 4m25.2s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 4m25.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 4m25.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 4m25.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 4m25.2s INFO: /sbin converted to /usr/sbin by /usr merge 4m31.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', '-ac', '--ignore-obsolete'] 4m40.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', '-ac', '--ignore-obsolete'] 4m40.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m40.9s DUMP: 0.15.6 4m40.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m40.9s INFO: Running adequate version 0.15.6 now. 4m40.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'qcumber'] 4m41.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'qcumber'] 4m41.0s INFO: Running scripts pre_remove 4m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_exceptions'] 4m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/pre_remove_exceptions'] 4m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m57.7s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed binutils binutils 2.40-2 install ok installed binutils-common:amd64 binutils-common 2.40-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.40-2 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed ca-certificates ca-certificates 20230311 install ok installed coinor-cbc coinor-cbc 2.10.8+ds1-1 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.8+ds1-1 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.3+repack1-4 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.6-3 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.4+repack1-2 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 9.1-1 install ok installed cpp cpp 4:12.2.0-3 install ok installed cpp-12 cpp-12 12.2.0-14 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed docutils-common docutils-common 0.19+dfsg-6 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed fontconfig fontconfig 2.14.1-4 install ok installed fontconfig-config fontconfig-config 2.14.1-4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-6 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-lyx fonts-lyx 2.3.7-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-7 install ok installed g++ g++ 4:12.2.0-3 install ok installed g++-12 g++-12 12.2.0-14 install ok installed gcc gcc 4:12.2.0-3 install ok installed gcc-12 gcc-12 12.2.0-14 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.74.0-3 install ok installed git git 1:2.39.2-1.1 install ok installed git-man git-man 1:2.39.2-1.1 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libasan8:amd64 libasan8 12.2.0-14 install ok installed libatomic1:amd64 libatomic1 12.2.0-14 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libbinutils:amd64 libbinutils 2.40-2 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0+ds1-21 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbsd0:amd64 libbsd0 0.11.7-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc-dev-bin libc-dev-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libc6-dev:amd64 libc6-dev 2.36-9+deb12u8 install ok installed libcairo2:amd64 libcairo2 1.16.0-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcc1-0:amd64 libcc1-0 12.2.0-14 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.33-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.40-2 install ok installed libctf0:amd64 libctf0 2.40-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u6 install ok installed libcurl4:amd64 libcurl4 7.88.1-10+deb12u6 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libdeflate0:amd64 libdeflate0 1.14-1 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.1-4 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.12.1+dfsg-5+deb12u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2.1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.2.0-14 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libgirepository-1.0-1:amd64 libgirepository-1.0-1 1.74.0-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgomp1:amd64 libgomp1 12.2.0-14 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgprofng0:amd64 libgprofng0 2.40-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 6.0.0+dfsg-3 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu72:amd64 libicu72 72.1-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libimagequant0:amd64 libimagequant0 2.17.0-1 install ok installed libisl23:amd64 libisl23 0.25-1.1 install ok installed libitm1:amd64 libitm1 12.2.0-14 install ok installed libjansson4:amd64 libjansson4 2.14-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2 install ok installed libjs-angularjs libjs-angularjs 1.8.3-1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 5.3.0-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-2 install ok installed liblsan0:amd64 liblsan0 12.2.0-14 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.0-1 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.21+ds-4 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.21+ds-4 install ok installed libopenblas0:amd64 libopenblas0 0.3.21+ds-4 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.21+ds-4 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.50.12+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.50.12+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.50.12+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.39-2 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.11.2-1+b1 install ok installed libpython3-dev:amd64 libpython3-dev 3.11.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11:amd64 libpython3.11 3.11.2-6+deb12u2 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.2-6+deb12u2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-5 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libraqm0:amd64 libraqm0 0.7.0-4.1 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.13-1~deb12u2 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.2.0-14 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libthai-data libthai-data 0.1.29-1 install ok installed libthai0:amd64 libthai0 0.1.29-1 install ok installed libtiff6:amd64 libtiff6 4.5.0-6+deb12u1 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libtsan2:amd64 libtsan2 12.2.0-14 install ok installed libubsan1:amd64 libubsan1 12.2.0-14 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libwebp7:amd64 libwebp7 1.2.4-0.2+deb12u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.2.4-0.2+deb12u1 install ok installed libwebpmux3:amd64 libwebpmux3 1.2.4-0.2+deb12u1 install ok installed libx11-6:amd64 libx11-6 2:1.8.4-2+deb12u2 install ok installed libx11-data libx11-data 2:1.8.4-2+deb12u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3~deb12u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxsimd-dev:amd64 libxsimd-dev 8.1.0-7 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed linux-libc-dev:amd64 linux-libc-dev 6.1.106-2 install ok installed littler littler 0.3.17-1 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed openssl openssl 3.0.13-1~deb12u2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-adal python3-adal 1.2.7-2 install ok installed python3-aiohttp python3-aiohttp 3.8.4-1 install ok installed python3-aiosignal python3-aiosignal 1.3.1-1 install ok installed python3-all python3-all 3.11.2-1+b1 install ok installed python3-all-dev python3-all-dev 3.11.2-1+b1 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-async-timeout python3-async-timeout 4.0.2-1 install ok installed python3-attr python3-attr 22.2.0-1 install ok installed python3-avro python3-avro 1.11.1+dfsg-2 install ok installed python3-azure python3-azure 20230112+git-1 install ok installed python3-azure-storage python3-azure-storage 20230112+git-1 install ok installed python3-bcrypt python3-bcrypt 3.2.2-1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.80+dfsg-4+b1 install ok installed python3-blinker python3-blinker 1.5-1 install ok installed python3-boto3 python3-boto3 1.26.27+dfsg-1 install ok installed python3-botocore python3-botocore 1.29.27+repack-1 install ok installed python3-brotli python3-brotli 1.0.9-2+b6 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.15.1-5+b1 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.0.1-2 install ok installed python3-colorama python3-colorama 0.4.6-2 install ok installed python3-configargparse python3-configargparse 1.5.3-1 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b1 install ok installed python3-cryptography python3-cryptography 38.0.4-3 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-2 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-4+b1 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-dev python3-dev 3.11.2-1+b1 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-docutils python3-docutils 0.19+dfsg-6 install ok installed python3-fastjsonschema python3-fastjsonschema 2.16.3-2 install ok installed python3-fonttools python3-fonttools 4.38.0-1+b1 install ok installed python3-frozenlist python3-frozenlist 1.3.3-1+b1 install ok installed python3-fs python3-fs 2.4.16-2 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-gi python3-gi 3.42.2-3+b1 install ok installed python3-git python3-git 3.1.30-1+deb12u2 install ok installed python3-gitdb python3-gitdb 4.0.9-2 install ok installed python3-humanfriendly python3-humanfriendly 10.0-3 install ok installed python3-idna python3-idna 3.3-1+deb12u1 install ok installed python3-isodate python3-isodate 0.6.1-1 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.10.3-1 install ok installed python3-jupyter-core python3-jupyter-core 4.12.0-1 install ok installed python3-jwt python3-jwt 2.6.0-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-lxml:amd64 python3-lxml 4.9.2-1+b1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b2 install ok installed python3-markupsafe python3-markupsafe 2.1.2-1+b1 install ok installed python3-marshmallow python3-marshmallow 3.18.0-1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-msal python3-msal 1.21.0-1 install ok installed python3-msal-extensions python3-msal-extensions 1.0.0-2 install ok installed python3-msrest python3-msrest 0.6.21-2 install ok installed python3-msrestazure python3-msrestazure 0.6.4-2 install ok installed python3-multidict python3-multidict 6.0.4-1+b1 install ok installed python3-nacl python3-nacl 1.5.0-2 install ok installed python3-nbformat python3-nbformat 5.5.0-1 install ok installed python3-numpy python3-numpy 1:1.24.2-1+deb12u1 install ok installed python3-oauthlib python3-oauthlib 3.2.2-1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-paramiko python3-paramiko 2.12.0-2 install ok installed python3-pil:amd64 python3-pil 9.4.0-1.1+deb12u1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 9.4.0-1.1+deb12u1 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-ply python3-ply 3.11-5 install ok installed python3-portalocker python3-portalocker 2.2.1-1 install ok installed python3-psutil python3-psutil 5.9.4-1+b1 install ok installed python3-pulp python3-pulp 2.6.0+dfsg-1 install ok installed python3-py python3-py 1.11.0-1 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.18.1-1+b3 install ok installed python3-pythran python3-pythran 0.11.0+ds-7 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-4 install ok installed python3-renderpm:amd64 python3-renderpm 3.6.12-1+b1 install ok installed python3-reportlab python3-reportlab 3.6.12-1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.6.12-1+b1 install ok installed python3-requests python3-requests 2.28.1+dfsg-1 install ok installed python3-requests-oauthlib python3-requests-oauthlib 1.3.0+ds-1 install ok installed python3-retry python3-retry 0.9.2-2 install ok installed python3-roman python3-roman 3.3-3 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.17.21-1 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.7-1+b2 install ok installed python3-s3transfer python3-s3transfer 0.6.0-1 install ok installed python3-scipy python3-scipy 1.10.1-2 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-smart-open python3-smart-open 5.2.1-5 install ok installed python3-smmap python3-smmap 5.0.0-1 install ok installed python3-stopit python3-stopit 1.1.2-2 install ok installed python3-strictyaml python3-strictyaml 1.6.1-3 install ok installed python3-sympy python3-sympy 1.11.1-1 install ok installed python3-tabulate python3-tabulate 0.8.9-1 install ok installed python3-throttler python3-throttler 1.2.2-2 install ok installed python3-tk:amd64 python3-tk 3.11.2-3 install ok installed python3-toposort python3-toposort 1.9-1 install ok installed python3-tqdm python3-tqdm 4.64.1-1 install ok installed python3-traitlets python3-traitlets 5.5.0-1 install ok installed python3-typing-extensions python3-typing-extensions 4.4.0-1 install ok installed python3-tz python3-tz 2022.7.1-4 install ok installed python3-uamqp python3-uamqp 1.5.3-1+b4 install ok installed python3-ufolib2 python3-ufolib2 0.14.0+dfsg1-1 install ok installed python3-urllib3 python3-urllib3 1.26.12-1 install ok installed python3-wrapt python3-wrapt 1.14.1-2+b2 install ok installed python3-yaml python3-yaml 6.0-3+b2 install ok installed python3-yarl python3-yarl 1.8.2-1+b1 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-dev python3.11-dev 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed qcumber qcumber 2.3.0-2 install ok installed r-base-core r-base-core 4.2.2.20221110-2 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.44.0-2 install ok installed r-bioc-savr r-bioc-savr 1.36.0-2 install ok installed r-cran-caret r-cran-caret 6.0-93+dfsg-1 install ok installed r-cran-class r-cran-class 7.3-21-1 install ok installed r-cran-cli r-cran-cli 3.6.0-1 install ok installed r-cran-clock r-cran-clock 0.6.1-2 install ok installed r-cran-codetools r-cran-codetools 0.2-19-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-0+dfsg-1 install ok installed r-cran-conquer r-cran-conquer 1.3.2-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.4.3-1 install ok installed r-cran-data.table r-cran-data.table 1.14.8+dfsg-1 install ok installed r-cran-digest r-cran-digest 0.6.31-1 install ok installed r-cran-dplyr r-cran-dplyr 1.0.10-1 install ok installed r-cran-e1071 r-cran-e1071 1.7-13-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2 install ok installed r-cran-fansi r-cran-fansi 1.0.4-1 install ok installed r-cran-farver r-cran-farver 2.1.1-1 install ok installed r-cran-foreach r-cran-foreach 1.5.2-1 install ok installed r-cran-future r-cran-future 1.31.0+dfsg-1 install ok installed r-cran-future.apply r-cran-future.apply 1.10.0+dfsg-1 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.4.1+dfsg-1 install ok installed r-cran-globals r-cran-globals 0.16.2-1 install ok installed r-cran-glue r-cran-glue 1.6.2-1 install ok installed r-cran-gower r-cran-gower 1.0.1-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gtable r-cran-gtable 0.3.1+dfsg-1 install ok installed r-cran-hardhat r-cran-hardhat 1.2.0+dfsg-1 install ok installed r-cran-ipred r-cran-ipred 0.9-13-1 install ok installed r-cran-isoband r-cran-isoband 0.2.7-1 install ok installed r-cran-iterators r-cran-iterators 1.0.14-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-20-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lattice r-cran-lattice 0.20-45-3 install ok installed r-cran-lava r-cran-lava 1.7.2.1+dfsg-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.3+dfsg-1 install ok installed r-cran-listenv r-cran-listenv 0.9.0+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.17-1 install ok installed r-cran-lubridate r-cran-lubridate 1.9.2+dfsg-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-58.2-1 install ok installed r-cran-matrix r-cran-matrix 1.5-3-1 install ok installed r-cran-matrixmodels r-cran-matrixmodels 0.5-1-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.63.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-41-1 install ok installed r-cran-modelmetrics r-cran-modelmetrics 1.2.2.2-1+b1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.162-1 install ok installed r-cran-nnet r-cran-nnet 7.3-18-1 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1.1-3 install ok installed r-cran-parallelly r-cran-parallelly 1.34.0-1 install ok installed r-cran-pillar r-cran-pillar 1.8.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.2-2 install ok installed r-cran-plyr r-cran-plyr 1.8.8-1 install ok installed r-cran-proc r-cran-proc 1.18.0-1+b1 install ok installed r-cran-prodlim r-cran-prodlim 2019.11.13-1+b1 install ok installed r-cran-progressr r-cran-progressr 0.13.0-1 install ok installed r-cran-proxy r-cran-proxy 0.4-27-1 install ok installed r-cran-purrr r-cran-purrr 1.0.1-1 install ok installed r-cran-quantreg r-cran-quantreg 5.94-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.10-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 0.12.0.1.0-1 install ok installed r-cran-recipes r-cran-recipes 1.0.4+dfsg-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 1.0.6-1 install ok installed r-cran-rpart r-cran-rpart 4.1.19-1 install ok installed r-cran-scales r-cran-scales 1.2.1-1 install ok installed r-cran-sparsem r-cran-sparsem 1.81-1 install ok installed r-cran-squarem r-cran-squarem 2021.1-1 install ok installed r-cran-stringi r-cran-stringi 1.7.12-1 install ok installed r-cran-stringr r-cran-stringr 1.5.0-1 install ok installed r-cran-survival r-cran-survival 3.5-3-1 install ok installed r-cran-tibble r-cran-tibble 3.1.8+dfsg-1 install ok installed r-cran-tidyr r-cran-tidyr 1.3.0-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.0+dfsg-1 install ok installed r-cran-timechange r-cran-timechange 0.2.0-1 install ok installed r-cran-timedate r-cran-timedate 4022.108-1 install ok installed r-cran-tzdb r-cran-tzdb 0.3.0-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.3-1 install ok installed r-cran-vctrs r-cran-vctrs 0.5.2-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.1-1 install ok installed r-cran-withr r-cran-withr 2.5.0-1 install ok installed r-cran-xml r-cran-xml 3.99-0.13-1 install ok installed readline-common readline-common 8.2-1.3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-1 install ok installed sensible-utils sensible-utils 0.0.17+nmu1 install ok installed sgml-base sgml-base 1.31 install ok installed snakemake snakemake 7.21.0-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.0.0-1 install ok installed unzip unzip 6.0-28 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.13.dfsg-1 4m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'qcumber'] 6m6.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-12 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gir1.2-glib-2.0 git git-man libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.36 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsodium23 libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 linux-libc-dev littler media-types openssl perl perl-modules-5.36 python-matplotlib-data python3 python3-adal python3-aiohttp python3-aiosignal python3-all python3-all-dev python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-beniget python3-biopython python3-blinker python3-boto3 python3-botocore python3-brotli python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-contourpy python3-cryptography python3-cycler python3-dateutil python3-datrie python3-decorator python3-dev python3-distutils python3-docutils python3-fastjsonschema python3-fonttools python3-frozenlist python3-fs python3-gast python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-marshmallow python3-matplotlib python3-minimal python3-mpmath python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-numpy python3-oauthlib python3-packaging python3-paramiko python3-pil python3-pil.imagetk python3-pkg-resources python3-ply python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-pythran python3-ratelimiter python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-scipy python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-ufolib2 python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-dev python3.11-minimal qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-sparsem r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common rpcsvc-proto sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip zlib1g-dev 0 upgraded, 0 newly installed, 387 to remove and 0 not upgraded. After this operation, 1891 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85409 files and directories currently installed.) Removing qcumber (2.3.0-2) ... Removing python3-matplotlib (3.6.3-1+b1) ... Removing g++ (4:12.2.0-3) ... Removing gcc (4:12.2.0-3) ... Removing python3-biopython (1.80+dfsg-4+b1) ... Removing python3-reportlab (3.6.12-1) ... Removing snakemake (7.21.0-1) ... Removing python3-smart-open (5.2.1-5) ... Removing python3-pulp (2.6.0+dfsg-1) ... Removing coinor-cbc (2.10.8+ds1-1) ... Removing coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Removing coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Removing coinor-libclp1:amd64 (1.17.6-3) ... Removing coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Removing coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Removing cpp (4:12.2.0-3) ... Removing python3-docutils (0.19+dfsg-6) ... Removing docutils-common (0.19+dfsg-6) ... Removing r-cran-quantreg (5.94-1) ... Removing r-cran-conquer (1.3.2-1) ... Removing r-cran-caret (6.0-93+dfsg-1) ... Removing r-cran-recipes (1.0.4+dfsg-1) ... Removing r-cran-ipred (0.9-13-1) ... Removing r-cran-rpart (4.1.19-1) ... Removing r-cran-prodlim (2019.11.13-1+b1) ... Removing r-cran-matrixmodels (0.5-1-1) ... Removing r-bioc-savr (1.36.0-2) ... Removing r-cran-ggplot2 (3.4.1+dfsg-1) ... Removing r-cran-mgcv (1.8-41-1) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-scales (1.2.1-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-dejavu-core (2.37-6) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing fonts-lyx (2.3.7-1) ... Removing python3-renderpm:amd64 (3.6.12-1+b1) ... Removing python3-git (3.1.30-1+deb12u2) ... Removing git (1:2.39.2-1.1) ... Removing git-man (1:2.39.2-1.1) ... Removing python3-contourpy (1.0.7-1+b1) ... Removing r-cran-rcpparmadillo (0.12.0.1.0-1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Removing python3-datrie:amd64 (0.8.2-4+b1) ... Removing liberror-perl (0.17029-2) ... Removing python3-nbformat (5.5.0-1) ... Removing python3-jupyter-core (4.12.0-1) ... Removing python3-traitlets (5.5.0-1) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing libopenblas-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0:amd64 (0.3.21+ds-4) ... Removing r-cran-kernsmooth (2.23-20-1) ... Removing r-cran-gower (1.0.1-1) ... Removing r-cran-modelmetrics (1.2.2.2-1+b1) ... Removing r-cran-data.table (1.14.8+dfsg-1) ... Removing r-cran-tidyr (1.3.0-1) ... Removing r-cran-stringr (1.5.0-1) ... Removing r-cran-stringi (1.7.12-1) ... Removing r-cran-xml (3.99-0.13-1) ... Removing libjs-angularjs (1.8.3-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libqhull-r8.0:amd64 (2020.2-5) ... Removing python3-paramiko (2.12.0-2) ... Removing python3-nacl (1.5.0-2) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing littler (0.3.17-1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Removing python3-bcrypt (3.2.2-1) ... Removing python3-boto3 (1.26.27+dfsg-1) ... Removing python3-s3transfer (0.6.0-1) ... Removing python3-botocore (1.29.27+repack-1) ... Removing python3-configargparse (1.5.3-1) ... Removing python3-connection-pool (0.0.3-2) ... Removing python3-cycler (0.11.0-1) ... Removing python3-retry (0.9.2-2) ... Removing python3-fastjsonschema (2.16.3-2) ... Removing python3-gitdb (4.0.9-2) ... Removing python3-humanfriendly (10.0-3) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-kiwisolver (1.4.4-1+b1) ... Removing python3-markupsafe (2.1.2-1+b1) ... Removing python3-stopit (1.1.2-2) ... Removing python3-py (1.11.0-1) ... Removing python3-psutil (5.9.4-1+b1) ... Removing python3-pyparsing (3.0.9-1) ... Removing python3-ratelimiter (1.2.0.post0-4) ... Removing python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Removing python3-roman (3.3-3) ... Removing python3-wrapt (1.14.1-2+b2) ... Removing python3-smmap (5.0.0-1) ... Removing python3-tabulate (0.8.9-1) ... Removing python3-throttler (1.2.2-2) ... Removing python3-toposort (1.9-1) ... Removing r-bioc-biocgenerics (0.44.0-2) ... Removing r-cran-e1071 (1.7-13-1) ... Removing r-cran-class (7.3-21-1) ... Removing r-cran-dplyr (1.0.10-1) ... Removing r-cran-tidyselect (1.2.0+dfsg-1) ... Removing r-cran-hardhat (1.2.0+dfsg-1) ... Removing r-cran-tibble (3.1.8+dfsg-1) ... Removing r-cran-purrr (1.0.1-1) ... Removing r-cran-clock (0.6.1-2) ... Removing r-cran-lava (1.7.2.1+dfsg-1) ... Removing r-cran-future.apply (1.10.0+dfsg-1) ... Removing r-cran-future (1.31.0+dfsg-1) ... Removing r-cran-globals (0.16.2-1) ... Removing r-cran-foreach (1.5.2-1) ... Removing r-cran-codetools (0.2-19-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.1-0+dfsg-1) ... Removing r-cran-tzdb (0.3.0-1) ... Removing r-cran-lubridate (1.9.2+dfsg-1) ... Removing r-cran-timechange (0.2.0-1) ... Removing r-cran-cpp11 (0.4.3-1) ... Removing r-cran-progressr (0.13.0-1) ... Removing r-cran-digest (0.6.31-1) ... Removing r-cran-ellipsis (0.3.2-2) ... Removing r-cran-pillar (1.8.1+dfsg-1) ... Removing r-cran-fansi (1.0.4-1) ... Removing r-cran-farver (2.1.1-1) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-gridextra (2.3-3) ... Removing r-cran-gtable (0.3.1+dfsg-1) ... Removing r-cran-isoband (0.2.7-1) ... Removing r-cran-iterators (1.0.14-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-nlme (3.1.162-1) ... Removing r-cran-listenv (0.9.0+dfsg-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-58.2-1) ... Removing r-cran-matrixstats (0.63.0-1) ... Removing r-cran-nnet (7.3-18-1) ... Removing r-cran-numderiv (2016.8-1.1-3) ... Removing r-cran-parallelly (1.34.0-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-proc (1.18.0-1+b1) ... Removing r-cran-plyr (1.8.8-1) ... Removing r-cran-proxy (0.4-27-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-sparsem (1.81-1) ... Removing r-cran-squarem (2021.1-1) ... Removing r-cran-timedate (4022.108-1) ... Removing r-cran-utf8 (1.2.3-1) ... Removing r-cran-viridislite (0.4.1-1) ... Removing r-cran-withr (2.5.0-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing r-cran-survival (3.5-3-1) ... Removing r-cran-matrix (1.5-3-1) ... Removing r-cran-rcpp (1.0.10-1) ... Removing r-cran-vctrs (0.5.2-1) ... Removing r-cran-lifecycle (1.0.3+dfsg-1) ... Removing r-cran-glue (1.6.2-1) ... Removing r-cran-lattice (0.20-45-3) ... Removing r-cran-littler (0.3.17-1) ... Removing r-cran-pkgkitten (0.2.2-2) ... Removing r-cran-rlang (1.0.6-1) ... Removing r-cran-cli (3.6.0-1) ... Removing r-base-core (4.2.2.20221110-2) ... Removing libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Removing libpango-1.0-0:amd64 (1.50.12+ds-1) ... Removing fontconfig (2.14.1-4) ... Removing libcairo2:amd64 (1.16.0-7) ... Removing libcurl4:amd64 (7.88.1-10+deb12u6) ... Removing libxt6:amd64 (1:1.2.1-1.1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libthai0:amd64 (0.1.29-1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing libthai-data (0.1.29-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.17+nmu1) ... Removing unzip (6.0-28) ... Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-13) ... Removing python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Removing libtiff6:amd64 (4.5.0-6+deb12u1) ... Removing libdeflate0:amd64 (1.14-1) ... Removing python3-azure-storage (20230112+git-1) ... Removing libraqm0:amd64 (0.7.0-4.1) ... Removing libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Removing libfribidi0:amd64 (1.0.8-2.1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libimagequant0:amd64 (2.17.0-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing liblerc4:amd64 (4.0.0+ds-2) ... Removing libopenjp2-7:amd64 (2.5.0-2) ... Removing libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Removing libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Removing python3-fonttools (4.38.0-1+b1) ... Removing python3-ufolib2 (0.14.0+dfsg1-1) ... Removing python3-scipy (1.10.1-2) ... Removing python3-pythran (0.11.0+ds-7) ... Removing python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Removing python3-tk:amd64 (3.11.2-3) ... Removing blt (2.5.3+dfsg-4.1) ... Removing python3-azure (20230112+git-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libfontconfig1:amd64 (2.14.1-4) ... Removing fontconfig-config (2.14.1-4) ... Removing fonts-urw-base35 (20200910-7) ... Removing g++-12 (12.2.0-14) ... Removing python3-msal-extensions (1.0.0-2) ... Removing python3-gi (3.42.2-3+b1) ... Removing gir1.2-glib-2.0:amd64 (1.74.0-3) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Removing libstdc++-12-dev:amd64 (12.2.0-14) ... Removing python3-numpy (1:1.24.2-1+deb12u1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing python3-all-dev (3.11.2-1+b1) ... Removing python3-dev (3.11.2-1+b1) ... Removing python3.11-dev (3.11.2-6+deb12u2) ... Removing libpython3-all-dev:amd64 (3.11.2-1+b1) ... Removing libpython3-dev:amd64 (3.11.2-1+b1) ... Removing libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Removing zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Removing libexpat1-dev:amd64 (2.5.0-1) ... Removing libc6-dev:amd64 (2.36-9+deb12u8) ... Removing libc-dev-bin (2.36-9+deb12u8) ... Removing libcrypt-dev:amd64 (1:4.4.33-2) ... Removing python3-msrestazure (0.6.4-2) ... Removing python3-all (3.11.2-1+b1) ... Removing python3-distutils (3.11.2-3) ... Removing python3-aiohttp (3.8.4-1) ... Removing python3-yarl (1.8.2-1+b1) ... Removing libpython3.11:amd64 (3.11.2-6+deb12u2) ... Removing xfonts-utils (1:7.7+6) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Removing libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Removing libopenblas0-pthread:amd64 (0.3.21+ds-4) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libgirepository-1.0-1:amd64 (1.74.0-3) ... Removing libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.3+ds-1) ... Removing libjs-sphinxdoc (5.3.0-4) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libpng16-16:amd64 (1.6.39-2) ... Removing python3-uamqp (1.5.3-1+b4) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxsimd-dev:amd64 (8.1.0-7) ... Removing python3-lxml:amd64 (4.9.2-1+b1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing python3-yaml (6.0-3+b2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing linux-libc-dev:amd64 (6.1.106-2) ... Removing python3-adal (1.2.7-2) ... Removing python3-aiosignal (1.3.1-1) ... Removing python3-fs (2.4.16-2) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-async-timeout (4.0.2-1) ... Removing python3-jsonschema (4.10.3-1) ... Removing python3-attr (22.2.0-1) ... Removing python3-avro (1.11.1+dfsg-2) ... Removing python3-beniget (0.4.1-3) ... Removing python3-brotli (1.0.9-2+b6) ... Removing python3-msal (1.21.0-1) ... Removing python3-colorama (0.4.6-2) ... Removing python3-strictyaml (1.6.1-3) ... Removing python3-dateutil (2.8.2-2) ... Removing python3-decorator (5.1.1-3) ... Removing python3-frozenlist (1.3.3-1+b1) ... Removing python3-gast (0.5.2-2) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-lz4 (4.0.2+dfsg-1+b2) ... Removing python3-marshmallow (3.18.0-1) ... Removing python3-sympy (1.11.1-1) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-multidict (6.0.4-1+b1) ... Removing python3-packaging (23.0-1) ... Removing python3-ply (3.11-5) ... Removing python3-portalocker (2.2.1-1) ... Removing python3-pyrsistent:amd64 (0.18.1-1+b3) ... Removing python3-ruamel.yaml (0.17.21-1) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Removing python3-tqdm (4.64.1-1) ... Removing python3-typing-extensions (4.4.0-1) ... Removing python3-tz (2022.7.1-4) ... Removing rpcsvc-proto (1.4.3-1) ... Removing unicode-data (15.0.0-1) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing gcc-12 (12.2.0-14) ... Removing binutils (2.40-2) ... Removing binutils-x86-64-linux-gnu (2.40-2) ... Removing libgprofng0:amd64 (2.40-2) ... Removing libctf0:amd64 (2.40-2) ... Removing libbinutils:amd64 (2.40-2) ... Removing binutils-common:amd64 (2.40-2) ... Removing python3-msrest (0.6.21-2) ... Removing cpp-12 (12.2.0-14) ... Removing libgcc-12-dev:amd64 (12.2.0-14) ... Removing libasan8:amd64 (12.2.0-14) ... Removing libatomic1:amd64 (12.2.0-14) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.7-2) ... Removing libcc1-0:amd64 (12.2.0-14) ... Removing libctf-nobfd0:amd64 (2.40-2) ... Removing python3-requests-oauthlib (1.3.0+ds-1) ... Removing python3-oauthlib (3.2.2-1) ... Removing python3-cryptography (38.0.4-3) ... Removing libgomp1:amd64 (12.2.0-14) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Removing libicu72:amd64 (72.1-3) ... Removing libisl23:amd64 (0.25-1.1) ... Removing libitm1:amd64 (12.2.0-14) ... Removing libjansson4:amd64 (2.14-2) ... Removing liblsan0:amd64 (12.2.0-14) ... Removing libmpc3:amd64 (1.3.1-1) ... Removing libmpfr6:amd64 (4.2.0-1) ... Removing libquadmath0:amd64 (12.2.0-14) ... Removing libtsan2:amd64 (12.2.0-14) ... Removing libubsan1:amd64 (12.2.0-14) ... Removing libx11-data (2:1.8.4-2+deb12u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-blinker (1.5-1) ... Removing python3-cffi-backend:amd64 (1.15.1-5+b1) ... Removing python3-isodate (0.6.1-1) ... Removing python3-jwt (2.6.0-1) ... Removing python3-requests (2.28.1+dfsg-1) ... Removing python3-certifi (2022.9.24-1) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-charset-normalizer (3.0.1-2) ... Removing python3-idna (3.3-1+deb12u1) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-urllib3 (1.26.12-1) ... Removing python3-six (1.16.0-4) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4-4) ... Removing libnsl2:amd64 (1.3.0-2) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing openssl (3.0.13-1~deb12u2) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing libssl3:amd64 (3.0.13-1~deb12u2) ... Removing libtirpc-common (1.3.3+ds-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 6m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'qcumber'] 6m6.6s INFO: Running scripts post_remove 6m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_remove_exceptions'] 6m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_remove_exceptions'] 6m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 6m7.9s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 6169 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.40-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-12 which isn't installed Purging configuration files for docutils-common (0.19+dfsg-6) ... Purging configuration files for fontconfig (2.14.1-4) ... Purging configuration files for fontconfig-config (2.14.1-4) ... Purging configuration files for fonts-dejavu-core (2.37-6) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-7) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gir1.2-glib-2.0 which isn't installed Purging configuration files for git (1:2.39.2-1.1) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.33-2) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgirepository-1.0-1 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-angularjs which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.29) ... dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11 which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for media-types (10.0.0) ... Purging configuration files for openssl (3.0.13-1~deb12u2) ... Purging configuration files for perl (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed Purging configuration files for python-matplotlib-data (3.6.3-1) ... Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-adal which isn't installed dpkg: warning: ignoring request to remove python3-aiohttp which isn't installed dpkg: warning: ignoring request to remove python3-aiosignal which isn't installed dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-async-timeout which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-azure which isn't installed dpkg: warning: ignoring request to remove python3-azure-storage which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-connection-pool which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-fastjsonschema which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-frozenlist which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-gi which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.10.3-1) ... dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-marshmallow which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-msal which isn't installed dpkg: warning: ignoring request to remove python3-msal-extensions which isn't installed dpkg: warning: ignoring request to remove python3-msrest which isn't installed dpkg: warning: ignoring request to remove python3-msrestazure which isn't installed dpkg: warning: ignoring request to remove python3-multidict which isn't installed dpkg: warning: ignoring request to remove python3-nacl which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-paramiko which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-portalocker which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pulp which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-retry which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smart-open which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-stopit which isn't installed dpkg: warning: ignoring request to remove python3-strictyaml which isn't installed Purging configuration files for python3-sympy (1.11.1-1) ... dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-throttler which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-uamqp which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yarl which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... Purging configuration files for r-base-core (4.2.2.20221110-2) ... dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-savr which isn't installed dpkg: warning: ignoring request to remove r-cran-caret which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-clock which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-conquer which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-e1071 which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-future which isn't installed dpkg: warning: ignoring request to remove r-cran-future.apply which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-globals which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gower which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hardhat which isn't installed dpkg: warning: ignoring request to remove r-cran-ipred which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lava which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-listenv which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixmodels which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-modelmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-numderiv which isn't installed dpkg: warning: ignoring request to remove r-cran-parallelly which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-proc which isn't installed dpkg: warning: ignoring request to remove r-cran-prodlim which isn't installed dpkg: warning: ignoring request to remove r-cran-progressr which isn't installed dpkg: warning: ignoring request to remove r-cran-proxy which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-quantreg which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which isn't installed dpkg: warning: ignoring request to remove r-cran-recipes which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sparsem which isn't installed dpkg: warning: ignoring request to remove r-cran-squarem which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-timechange which isn't installed dpkg: warning: ignoring request to remove r-cran-timedate which isn't installed dpkg: warning: ignoring request to remove r-cran-tzdb which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed Purging configuration files for readline-common (8.2-1.3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove snakemake which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-28) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 6m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-12', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'gcc', 'gcc-12', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.36:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libstdc++-12-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-beniget', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-dev', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-fonttools', 'python3-frozenlist', 'python3-fs', 'python3-gast', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-marshmallow', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-numpy', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-ply', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pythran', 'python3-ratelimiter', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-scipy', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-sympy', 'python3-tabulate', 'python3-throttler', 'python3-tk:amd64', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-ufolib2', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-cpp11', 'r-cran-data.table', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-e1071', 'r-cran-ellipsis', 'r-cran-fansi', 'r-cran-farver', 'r-cran-foreach', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-kernsmooth', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-modelmetrics', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-parallelly', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-recipes', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rpart', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-squarem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tzdb', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'snakemake', 'tk8.6-blt2.5', 'ucf', 'unicode-data', 'unzip', 'w3c-sgml-lib', 'x11-common', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 6m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--purge', 'qcumber'] 6m8.1s DUMP: (Reading database ... 6097 files and directories currently installed.) Purging configuration files for qcumber (2.3.0-2) ... 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--purge', 'qcumber'] 6m8.1s INFO: Running scripts post_purge 6m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_purge_exceptions'] 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_purge_exceptions'] 6m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--purge', '--pending'] 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--purge', '--pending'] 6m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--remove', '--pending'] 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg', '--remove', '--pending'] 6m8.1s INFO: Running scripts post_test 6m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_test_exceptions'] 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'tmp/scripts/post_test_exceptions'] 6m8.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 6m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 6m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg-divert', '--list'] 6m8.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 6m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'dpkg-divert', '--list'] 6m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'clean'] 6m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s', 'apt-get', 'clean'] 6m8.5s DEBUG: Recording chroot state 6m9.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/shm'] 6m9.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/shm'] 6m9.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/console'] 6m9.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/console'] 6m9.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/ptmx'] 6m9.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/ptmx'] 6m9.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/pts'] 6m9.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/dev/pts'] 6m9.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/proc'] 6m9.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s/proc'] 6m9.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 6m9.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpxxlkcq6s'] 6m9.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpxxlkcq6s 6m9.8s INFO: PASS: Upgrading between Debian distributions. 6m9.8s INFO: PASS: All tests. 6m9.8s INFO: piuparts run ends. ret=0 End: 2024-08-22 17:12:32 GMT