Start: 2024-08-21 21:15:46 GMT [bookworm] Package: snakemake Version: 7.21.0-1 Installed-Size: 1484 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.21.0-1_all.deb Size: 301468 MD5sum: 6ebcdc849d5c14eb9fcdb1b1fc0d0664 SHA256: 9c20c65785aee786ea6332a3194b68afabc378a46f585d597218bc870a96fec4 [bookworm-next] Package: snakemake Version: 7.21.0-1 Installed-Size: 1484 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.21.0-1_all.deb Size: 301468 MD5sum: 6ebcdc849d5c14eb9fcdb1b1fc0d0664 SHA256: 9c20c65785aee786ea6332a3194b68afabc378a46f585d597218bc870a96fec4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt snakemake=7.21.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201642~1.4.3-11-g36a88c35 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d bookworm -d bookworm-next -B /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat --apt snakemake=7.21.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmprns8snof 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmprns8snof 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprns8snof', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprns8snof', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprns8snof/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprns8snof/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmprns8snof/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'update'] 0m1.2s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'update'] 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_dummy_users'] 0m3.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_dummy_users'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_forbid_home'] 0m3.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_forbid_home'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_minimize'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_minimize'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_zz_backports'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_setup_zz_backports'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.3s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bookworm2next/reference-chroot-metadata.dat 0m3.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 0m3.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 0m3.7s INFO: Running scripts is_testable 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_test_root_password'] 0m3.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_test_root_password'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.0s DUMP: Package: snakemake Version: 7.21.0-1 Installed-Size: 1484 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://snakemake.readthedocs.io/ Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.21.0-1_all.deb Size: 301468 MD5sum: 6ebcdc849d5c14eb9fcdb1b1fc0d0664 SHA256: 9c20c65785aee786ea6332a3194b68afabc378a46f585d597218bc870a96fec4 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.0s INFO: apt-cache knows about the following packages: snakemake 0m4.0s INFO: Running scripts pre_install 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_extras'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_extras'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy'] 0m4.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy', 'snakemake'] 0m4.1s DUMP: snakemake: Installed: (none) Candidate: 7.21.0-1 Version table: 7.21.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy', 'snakemake'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-y', 'install', 'snakemake'] 1m27.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings gir1.2-glib-2.0 git git-man libblas3 libbrotli1 libcurl3-gnutls libdatrie1 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgssapi-krb5-2 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libperl5.36 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl perl perl-modules-5.36 python3 python3-adal python3-aiohttp python3-aiosignal python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-oauthlib python3-packaging python3-paramiko python3-pkg-resources python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-tabulate python3-throttler python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-uamqp python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-minimal readline-common sgml-base xml-core Suggested packages: gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gdbm-l10n low-memory-monitor krb5-doc krb5-user sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc python-azure-doc python-blinker-doc python-cryptography-doc python3-cryptography-vectors docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip python3-crypto python-nacl-doc python3-gssapi python3-setuptools python-psutil-doc subversion python3-pytest python-pyparsing-doc python3-openssl python3-socks python-requests-doc python3-nose python3-brotli python3.11-venv python3.11-doc binutils binfmt-support readline-doc sgml-base-doc slurm-client snakemake-doc debhelper Recommended packages: patch less ssh-client libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules netbase libpaper-utils python3-pil python3-pygments python3-babel python3-json-pointer python3-rfc3987 python3-uritemplate python3-webcolors python3-invoke cwltool imagemagick python3-tz python3-yappi python3-biopython python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes The following NEW packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings gir1.2-glib-2.0 git git-man libblas3 libbrotli1 libcurl3-gnutls libdatrie1 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgssapi-krb5-2 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libperl5.36 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl perl perl-modules-5.36 python3 python3-adal python3-aiohttp python3-aiosignal python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-oauthlib python3-packaging python3-paramiko python3-pkg-resources python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-tabulate python3-throttler python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-uamqp python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-minimal readline-common sgml-base snakemake xml-core 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 62.6 MB of archives. After this operation, 845 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:16 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:27 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.13-1~deb12u1 [1418 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-2 [440 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 coinor-libclp1 amd64 1.17.6-3 [843 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-4 [409 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 coinor-libcbc3 amd64 2.10.8+ds1-1 [715 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 coinor-cbc amd64 2.10.8+ds1-1 [14.8 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u3 [1400 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libgirepository-1.0-1 amd64 1.74.0-3 [101 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 gir1.2-glib-2.0 amd64 1.74.0-3 [159 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u6 [385 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 git-man all 1:2.39.2-1.1 [2049 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 git amd64 1:2.39.2-1.1 [7171 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 python3-cryptography amd64 38.0.4-3 [666 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 python3-jwt all 2.6.0-1 [26.6 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 python3-adal all 1.2.7-2 [32.1 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 python3-multidict amd64 6.0.4-1+b1 [31.6 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 python3-yarl amd64 1.8.2-1+b1 [49.8 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 python3-async-timeout all 4.0.2-1 [7476 B] Get:81 http://deb.debian.org/debian bookworm/main amd64 python3-frozenlist amd64 1.3.3-1+b1 [30.0 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 python3-aiosignal all 1.3.1-1 [6016 B] Get:83 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 python3-aiohttp amd64 3.8.4-1 [251 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 python3-isodate all 0.6.1-1 [25.3 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 python3-blinker all 1.5-1 [14.7 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 python3-oauthlib all 3.2.2-1 [95.4 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 python3-requests-oauthlib all 1.3.0+ds-1 [20.7 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 python3-msrest all 0.6.21-2 [48.0 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 python3-msrestazure all 0.6.4-2 [26.4 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 python3-azure-storage all 20230112+git-1 [280 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3-colorama all 0.4.6-2 [36.8 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-marshmallow all 3.18.0-1 [66.3 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-msal all 1.21.0-1 [85.9 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-gi amd64 3.42.2-3+b1 [219 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-portalocker all 2.2.1-1 [18.5 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-msal-extensions all 1.0.0-2 [16.9 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml.clib amd64 0.2.7-1+b2 [113 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-ruamel.yaml all 0.17.21-1 [103 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-strictyaml all 1.6.1-3 [92.9 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-uamqp amd64 1.5.3-1+b4 [647 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-azure all 20230112+git-1 [11.9 MB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-bcrypt amd64 3.2.2-1 [32.2 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-jmespath all 1.0.1-1 [21.1 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-botocore all 1.29.27+repack-1 [5502 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-s3transfer all 0.6.0-1 [53.0 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-boto3 all 1.26.27+dfsg-1 [187 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-configargparse all 1.5.3-1 [26.1 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-datrie amd64 0.8.2-4+b1 [97.7 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 python3-fastjsonschema all 2.16.3-2 [21.6 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-smmap all 5.0.0-1 [21.0 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3-gitdb all 4.0.9-2 [45.7 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-git all 3.1.30-1+deb12u2 [135 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-humanfriendly all 10.0-3 [85.2 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-traitlets all 5.5.0-1 [92.4 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-jupyter-core all 4.12.0-1 [27.3 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-nacl amd64 1.5.0-2 [59.3 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-nbformat all 5.5.0-1 [43.2 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-paramiko all 2.12.0-2 [133 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-psutil amd64 5.9.4-1+b1 [189 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-pulp all 2.6.0+dfsg-1 [66.0 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3-ratelimiter amd64 1.2.0.post0-4 [5740 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3-retry all 0.9.2-2 [7020 B] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-smart-open all 5.2.1-5 [87.9 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-stopit all 1.1.2-2 [12.6 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-tabulate all 0.8.9-1 [35.2 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-throttler all 1.2.2-2 [7072 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-toposort all 1.9-1 [7272 B] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 snakemake all 7.21.0-1 [301 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.6 MB in 1s (105 MB/s) Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package python3.11-minimal. Preparing to unpack .../8-python3.11-minimal_3.11.2-6+deb12u2_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6+deb12u2) ... Setting up libssl3:amd64 (3.0.13-1~deb12u1) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6+deb12u2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Unpacking libncursesw6:amd64 (6.4-4) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../03-libkrb5support0_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../04-libk5crypto3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../05-libkeyutils1_1.6.3-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../06-libkrb5-3_1.20.1-2+deb12u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-2+deb12u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8933 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.13-1~deb12u1_amd64.deb ... Unpacking openssl (3.0.13-1~deb12u1) ... 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Unpacking coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Selecting previously unselected package coinor-libosi1v5:amd64. Preparing to unpack .../009-coinor-libosi1v5_0.108.6+repack1-2_amd64.deb ... Unpacking coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Selecting previously unselected package coinor-libclp1:amd64. Preparing to unpack .../010-coinor-libclp1_1.17.6-3_amd64.deb ... Unpacking coinor-libclp1:amd64 (1.17.6-3) ... Selecting previously unselected package coinor-libcgl1:amd64. Preparing to unpack .../011-coinor-libcgl1_0.60.3+repack1-4_amd64.deb ... Unpacking coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Selecting previously unselected package coinor-libcbc3:amd64. Preparing to unpack .../012-coinor-libcbc3_2.10.8+ds1-1_amd64.deb ... Unpacking coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Selecting previously unselected package coinor-cbc. Preparing to unpack .../013-coinor-cbc_2.10.8+ds1-1_amd64.deb ... Unpacking coinor-cbc (2.10.8+ds1-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../014-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../015-docutils-common_0.19+dfsg-6_all.deb ... Unpacking docutils-common (0.19+dfsg-6) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../016-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../017-libglib2.0-0_2.74.6-2+deb12u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Selecting previously unselected package libgirepository-1.0-1:amd64. Preparing to unpack .../018-libgirepository-1.0-1_1.74.0-3_amd64.deb ... Unpacking libgirepository-1.0-1:amd64 (1.74.0-3) ... Selecting previously unselected package gir1.2-glib-2.0:amd64. 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Unpacking libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../025-libpsl5_0.21.2-1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../026-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../027-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../028-libcurl3-gnutls_7.88.1-10+deb12u6_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../029-liberror-perl_0.17029-2_all.deb ... Unpacking liberror-perl (0.17029-2) ... Selecting previously unselected package git-man. Preparing to unpack .../030-git-man_1%3a2.39.2-1.1_all.deb ... Unpacking git-man (1:2.39.2-1.1) ... Selecting previously unselected package git. Preparing to unpack .../031-git_1%3a2.39.2-1.1_amd64.deb ... Unpacking git (1:2.39.2-1.1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../032-libdatrie1_0.2.13-2+b1_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-2+b1) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../033-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../034-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libsodium23:amd64. Preparing to unpack .../035-libsodium23_1.0.18-1_amd64.deb ... Unpacking libsodium23:amd64 (1.0.18-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../036-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-cffi-backend:amd64. Preparing to unpack .../037-python3-cffi-backend_1.15.1-5+b1_amd64.deb ... Unpacking python3-cffi-backend:amd64 (1.15.1-5+b1) ... Selecting previously unselected package python3-cryptography. Preparing to unpack .../038-python3-cryptography_38.0.4-3_amd64.deb ... Unpacking python3-cryptography (38.0.4-3) ... Selecting previously unselected package python3-six. Preparing to unpack .../039-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../040-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-jwt. Preparing to unpack .../041-python3-jwt_2.6.0-1_all.deb ... Unpacking python3-jwt (2.6.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../042-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../043-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../044-python3-idna_3.3-1+deb12u1_all.deb ... Unpacking python3-idna (3.3-1+deb12u1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../045-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../046-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../047-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../048-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-adal. Preparing to unpack .../049-python3-adal_1.2.7-2_all.deb ... Unpacking python3-adal (1.2.7-2) ... Selecting previously unselected package python3-multidict. Preparing to unpack .../050-python3-multidict_6.0.4-1+b1_amd64.deb ... Unpacking python3-multidict (6.0.4-1+b1) ... Selecting previously unselected package python3-yarl. Preparing to unpack .../051-python3-yarl_1.8.2-1+b1_amd64.deb ... Unpacking python3-yarl (1.8.2-1+b1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../052-python3-typing-extensions_4.4.0-1_all.deb ... Unpacking python3-typing-extensions (4.4.0-1) ... Selecting previously unselected package python3-async-timeout. 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Selecting previously unselected package python3-ruamel.yaml.clib:amd64. Preparing to unpack .../076-python3-ruamel.yaml.clib_0.2.7-1+b2_amd64.deb ... Unpacking python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../077-python3-ruamel.yaml_0.17.21-1_all.deb ... Unpacking python3-ruamel.yaml (0.17.21-1) ... Selecting previously unselected package python3-strictyaml. Preparing to unpack .../078-python3-strictyaml_1.6.1-3_all.deb ... Unpacking python3-strictyaml (1.6.1-3) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../079-python3-tqdm_4.64.1-1_all.deb ... Unpacking python3-tqdm (4.64.1-1) ... Selecting previously unselected package python3-uamqp. Preparing to unpack .../080-python3-uamqp_1.5.3-1+b4_amd64.deb ... Unpacking python3-uamqp (1.5.3-1+b4) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../081-python3-yaml_6.0-3+b2_amd64.deb ... Unpacking python3-yaml (6.0-3+b2) ... Selecting previously unselected package python3-azure. Preparing to unpack .../082-python3-azure_20230112+git-1_all.deb ... Unpacking python3-azure (20230112+git-1) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../083-python3-bcrypt_3.2.2-1_amd64.deb ... Unpacking python3-bcrypt (3.2.2-1) ... Selecting previously unselected package python3-jmespath. Preparing to unpack .../084-python3-jmespath_1.0.1-1_all.deb ... Unpacking python3-jmespath (1.0.1-1) ... Selecting previously unselected package python3-botocore. Preparing to unpack .../085-python3-botocore_1.29.27+repack-1_all.deb ... Unpacking python3-botocore (1.29.27+repack-1) ... Selecting previously unselected package python3-s3transfer. Preparing to unpack .../086-python3-s3transfer_0.6.0-1_all.deb ... Unpacking python3-s3transfer (0.6.0-1) ... Selecting previously unselected package python3-boto3. 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Selecting previously unselected package python3-distutils. Preparing to unpack .../093-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package python3-roman. Preparing to unpack .../094-python3-roman_3.3-3_all.deb ... Unpacking python3-roman (3.3-3) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../095-python3-docutils_0.19+dfsg-6_all.deb ... Unpacking python3-docutils (0.19+dfsg-6) ... Selecting previously unselected package python3-fastjsonschema. Preparing to unpack .../096-python3-fastjsonschema_2.16.3-2_all.deb ... Unpacking python3-fastjsonschema (2.16.3-2) ... Selecting previously unselected package python3-smmap. Preparing to unpack .../097-python3-smmap_5.0.0-1_all.deb ... Unpacking python3-smmap (5.0.0-1) ... Selecting previously unselected package python3-gitdb. Preparing to unpack .../098-python3-gitdb_4.0.9-2_all.deb ... Unpacking python3-gitdb (4.0.9-2) ... Selecting previously unselected package python3-git. Preparing to unpack .../099-python3-git_3.1.30-1+deb12u2_all.deb ... Unpacking python3-git (3.1.30-1+deb12u2) ... Selecting previously unselected package python3-humanfriendly. Preparing to unpack .../100-python3-humanfriendly_10.0-3_all.deb ... Unpacking python3-humanfriendly (10.0-3) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../101-python3-markupsafe_2.1.2-1+b1_amd64.deb ... Unpacking python3-markupsafe (2.1.2-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../102-python3-jinja2_3.1.2-1_all.deb ... Unpacking python3-jinja2 (3.1.2-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../103-python3-traitlets_5.5.0-1_all.deb ... Unpacking python3-traitlets (5.5.0-1) ... Selecting previously unselected package python3-jupyter-core. Preparing to unpack .../104-python3-jupyter-core_4.12.0-1_all.deb ... Unpacking python3-jupyter-core (4.12.0-1) ... Selecting previously unselected package python3-nacl. Preparing to unpack .../105-python3-nacl_1.5.0-2_amd64.deb ... Unpacking python3-nacl (1.5.0-2) ... Selecting previously unselected package python3-nbformat. Preparing to unpack .../106-python3-nbformat_5.5.0-1_all.deb ... Unpacking python3-nbformat (5.5.0-1) ... Selecting previously unselected package python3-paramiko. Preparing to unpack .../107-python3-paramiko_2.12.0-2_all.deb ... Unpacking python3-paramiko (2.12.0-2) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../108-python3-psutil_5.9.4-1+b1_amd64.deb ... Unpacking python3-psutil (5.9.4-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../109-python3-pyparsing_3.0.9-1_all.deb ... Unpacking python3-pyparsing (3.0.9-1) ... Selecting previously unselected package python3-pulp. Preparing to unpack .../110-python3-pulp_2.6.0+dfsg-1_all.deb ... Unpacking python3-pulp (2.6.0+dfsg-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../111-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-ratelimiter. Preparing to unpack .../112-python3-ratelimiter_1.2.0.post0-4_amd64.deb ... Unpacking python3-ratelimiter (1.2.0.post0-4) ... Selecting previously unselected package python3-retry. Preparing to unpack .../113-python3-retry_0.9.2-2_all.deb ... Unpacking python3-retry (0.9.2-2) ... Selecting previously unselected package python3-smart-open. Preparing to unpack .../114-python3-smart-open_5.2.1-5_all.deb ... Unpacking python3-smart-open (5.2.1-5) ... Selecting previously unselected package python3-stopit. Preparing to unpack .../115-python3-stopit_1.1.2-2_all.deb ... Unpacking python3-stopit (1.1.2-2) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../116-python3-tabulate_0.8.9-1_all.deb ... Unpacking python3-tabulate (0.8.9-1) ... Selecting previously unselected package python3-throttler. Preparing to unpack .../117-python3-throttler_1.2.2-2_all.deb ... Unpacking python3-throttler (1.2.2-2) ... Selecting previously unselected package python3-toposort. Preparing to unpack .../118-python3-toposort_1.9-1_all.deb ... Unpacking python3-toposort (1.9-1) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../119-python3-wrapt_1.14.1-2+b2_amd64.deb ... Unpacking python3-wrapt (1.14.1-2+b2) ... Selecting previously unselected package snakemake. Preparing to unpack .../120-snakemake_7.21.0-1_all.deb ... Unpacking snakemake (7.21.0-1) ... Setting up media-types (10.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libsodium23:amd64 (1.0.18-1) ... Setting up libdatrie1:amd64 (0.2.13-2+b1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up git-man (1:2.39.2-1.1) ... Setting up libgirepository-1.0-1:amd64 (1.74.0-3) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.13-1~deb12u1) ... Setting up readline-common (8.2-1.3) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up gir1.2-glib-2.0:amd64 (1.74.0-3) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up coinor-libclp1:amd64 (1.17.6-3) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Setting up coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up liberror-perl (0.17029-2) ... Setting up coinor-cbc (2.10.8+ds1-1) ... Setting up git (1:2.39.2-1.1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-multidict (6.0.4-1+b1) ... Setting up python3-frozenlist (1.3.3-1+b1) ... Setting up python3-aiosignal (1.3.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up python3-async-timeout (4.0.2-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-gi (3.42.2-3+b1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-fastjsonschema (2.16.3-2) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b3) ... Setting up python3-traitlets (5.5.0-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-datrie:amd64 (0.8.2-4+b1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-yarl (1.8.2-1+b1) ... Setting up python3-smmap (5.0.0-1) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-blinker (1.5-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-toposort (1.9-1) ... Setting up python3-configargparse (1.5.3-1) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-jwt (2.6.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3-pulp (2.6.0+dfsg-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Setting up python3-aiohttp (3.8.4-1) ... Setting up python3-marshmallow (3.18.0-1) ... Setting up python3-tabulate (0.8.9-1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-gitdb (4.0.9-2) ... Setting up python3-uamqp (1.5.3-1+b4) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up python3-cryptography (38.0.4-3) ... Setting up python3-git (3.1.30-1+deb12u2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-retry (0.9.2-2) ... Setting up python3-ruamel.yaml (0.17.21-1) ... Setting up python3-adal (1.2.7-2) ... Setting up python3-stopit (1.1.2-2) ... Setting up python3-jupyter-core (4.12.0-1) ... Setting up python3-nacl (1.5.0-2) ... Setting up python3-msal (1.21.0-1) ... Setting up python3-msal-extensions (1.0.0-2) ... Setting up python3-nbformat (5.5.0-1) ... Setting up python3-strictyaml (1.6.1-3) ... Setting up python3-oauthlib (3.2.2-1) ... Setting up python3-botocore (1.29.27+repack-1) ... Setting up python3-paramiko (2.12.0-2) ... Setting up python3-requests-oauthlib (1.3.0+ds-1) ... Setting up python3-s3transfer (0.6.0-1) ... Setting up python3-msrest (0.6.21-2) ... Setting up python3-boto3 (1.26.27+dfsg-1) ... Setting up python3-msrestazure (0.6.4-2) ... Setting up python3-azure (20230112+git-1) ... Setting up python3-azure-storage (20230112+git-1) ... Setting up python3-smart-open (5.2.1-5) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up snakemake (7.21.0-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-y', 'install', 'snakemake'] 1m27.7s INFO: Running scripts post_install 1m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_install_exceptions'] 1m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_install_exceptions'] 1m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m31.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m31.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmprns8snof to bookworm-next 1m31.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main deb http://security.debian.org bookworm-security main deb http://deb.debian.org/debian/ bookworm-updates main deb http://deb.debian.org/debian/ bookworm-proposed-updates main 1m31.6s INFO: Running scripts pre_distupgrade 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_exceptions'] 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_exceptions'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'update'] 1m33.4s DUMP: Get:1 http://security.debian.org bookworm-security InRelease [48.0 kB] Hit:2 http://deb.debian.org/debian bookworm InRelease Get:3 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:4 http://deb.debian.org/debian bookworm-proposed-updates InRelease [59.5 kB] Get:5 http://security.debian.org bookworm-security/main amd64 Packages [176 kB] Get:6 http://security.debian.org bookworm-security/main Translation-en [106 kB] Get:7 http://deb.debian.org/debian bookworm-updates/main amd64 Packages [13.8 kB] Get:8 http://deb.debian.org/debian bookworm-updates/main Translation-en [16.0 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages [90.8 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main Translation-en [51.3 kB] Fetched 616 kB in 1s (914 kB/s) Reading package lists... 1m33.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'update'] 1m33.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-yf', 'dist-upgrade'] 1m36.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl3 libsystemd0 libudev1 openssl 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7825 kB of archives. After this operation, 5120 B of additional disk space will be used. Get:1 http://security.debian.org bookworm-security/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u2 [135 kB] Get:2 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc6 amd64 2.36-9+deb12u8 [2754 kB] Get:3 http://security.debian.org bookworm-security/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u2 [332 kB] Get:4 http://security.debian.org bookworm-security/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u2 [32.6 kB] Get:5 http://security.debian.org bookworm-security/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u2 [78.7 kB] Get:6 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libc-bin amd64 2.36-9+deb12u8 [608 kB] Get:7 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libsystemd0 amd64 252.29-1~deb12u1 [332 kB] Get:8 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libudev1 amd64 252.29-1~deb12u1 [108 kB] Get:9 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 libssl3 amd64 3.0.13-1~deb12u2 [2023 kB] Get:10 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 openssl amd64 3.0.13-1~deb12u2 [1421 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7825 kB in 0s (66.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44247 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u8_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44247 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u8_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u8) over (2.36-9+deb12u7) ... Setting up libc-bin (2.36-9+deb12u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44247 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.29-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44247 files and directories currently installed.) Preparing to unpack .../libudev1_252.29-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.29-1~deb12u1) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (252.29-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44247 files and directories currently installed.) Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-2+deb12u2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../1-libkrb5-3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5support0_1.20.1-2+deb12u2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-2+deb12u2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-2+deb12u2) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libssl3_3.0.13-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.13-1~deb12u2) over (3.0.13-1~deb12u1) ... Preparing to unpack .../5-openssl_3.0.13-1~deb12u2_amd64.deb ... Unpacking openssl (3.0.13-1~deb12u2) over (3.0.13-1~deb12u1) ... Setting up libssl3:amd64 (3.0.13-1~deb12u2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Setting up openssl (3.0.13-1~deb12u2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 1m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-yf', 'dist-upgrade'] 1m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m37.3s DUMP: d8d332c94c6ed6182814c5286ffa0dd5 - 1m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 1m37.5s DUMP: Package: snakemake Version: 7.21.0-1 Installed-Size: 1484 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2 (>= 3.0~), python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-requests, python3-retry, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources, python3-ratelimiter, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://snakemake.readthedocs.io/ Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.21.0-1_all.deb Size: 301468 MD5sum: 6ebcdc849d5c14eb9fcdb1b1fc0d0664 SHA256: 9c20c65785aee786ea6332a3194b68afabc378a46f585d597218bc870a96fec4 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 1m37.5s INFO: apt-cache knows about the following packages: snakemake 1m37.5s INFO: Running scripts pre_install 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_database-server'] 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_database-server'] 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_exceptions'] 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_exceptions'] 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_extras'] 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_extras'] 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture'] 1m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture'] 1m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy'] 1m37.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy'] 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy', 'snakemake'] 1m37.7s DUMP: snakemake: Installed: 7.21.0-1 Candidate: 7.21.0-1 Version table: *** 7.21.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 1m37.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy', 'snakemake'] 1m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-y', 'install', 'snakemake'] 1m38.1s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (7.21.0-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-y', 'install', 'snakemake'] 1m38.1s INFO: Running scripts post_install 1m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_install_exceptions'] 1m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_install_exceptions'] 1m38.1s INFO: Running scripts post_distupgrade 1m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_exceptions'] 1m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_exceptions'] 1m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_zz_backports'] 1m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_distupgrade_zz_backports'] 1m38.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m41.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m41.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m44.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m44.3s INFO: Running scripts pre_install 1m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_database-server'] 1m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_database-server'] 1m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_exceptions'] 1m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_exceptions'] 1m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_extras'] 1m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_extras'] 1m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture'] 1m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture'] 1m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy'] 1m44.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm-proposed-updates/main amd64 Packages release v=12-updates,o=Debian,a=proposed-updates,n=bookworm-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bookworm-updates/main amd64 Packages release v=12-updates,o=Debian,a=stable-updates,n=bookworm-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bookworm-security/main amd64 Packages release v=12,o=Debian,a=stable-security,n=bookworm-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy'] 1m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy', 'snakemake'] 1m44.4s DUMP: snakemake: Installed: 7.21.0-1 Candidate: 7.21.0-1 Version table: *** 7.21.0-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 1m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-cache', 'policy', 'snakemake'] 1m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-y', 'install', 'snakemake=7.21.0-1'] 1m44.7s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (7.21.0-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', '-y', 'install', 'snakemake=7.21.0-1'] 1m44.7s INFO: Running scripts post_install 1m44.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_install_exceptions'] 1m44.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_install_exceptions'] 1m44.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m48.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 1m49.1s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 1m49.1s INFO: /bin converted to /usr/bin by /usr merge 1m49.1s INFO: /lib converted to /usr/lib by /usr merge 1m49.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m49.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m49.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m49.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m49.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m49.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m49.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m49.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m49.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m49.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m49.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m49.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m49.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m49.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m49.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m49.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m49.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m49.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m49.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m49.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m49.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m49.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m49.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m49.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m49.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m49.2s INFO: /sbin converted to /usr/sbin by /usr merge 1m52.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprns8snof', '-ac', '--ignore-obsolete'] 1m56.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprns8snof', '-ac', '--ignore-obsolete'] 1m56.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m56.7s DUMP: 0.15.6 1m56.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m56.7s INFO: Running adequate version 0.15.6 now. 1m56.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'snakemake'] 1m56.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'snakemake'] 1m56.9s INFO: Running scripts pre_remove 1m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_exceptions'] 2m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/pre_remove_exceptions'] 2m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m1.6s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed ca-certificates ca-certificates 20230311 install ok installed coinor-cbc coinor-cbc 2.10.8+ds1-1 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.8+ds1-1 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.3+repack1-4 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.6-3 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.4+repack1-2 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed docutils-common docutils-common 0.19+dfsg-6 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.74.0-3 install ok installed git git 1:2.39.2-1.1 install ok installed git-man git-man 1:2.39.2-1.1 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblas3:amd64 libblas3 3.11.0-2 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u8 install ok installed libc6:amd64 libc6 2.36-9+deb12u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.88.1-10+deb12u6 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-2+b1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed liberror-perl liberror-perl 0.17029-2 install ok installed libexpat1:amd64 libexpat1 2.5.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-3 install ok installed libgdbm6:amd64 libgdbm6 1.23-3 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-14 install ok installed libgirepository-1.0-1:amd64 libgirepository-1.0-1 1.74.0-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-2+deb12u2 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-2+deb12u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-2+deb12u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-2+deb12u2 install ok installed liblapack3:amd64 liblapack3 3.11.0-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libncursesw6:amd64 libncursesw6 6.4-4 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.52.0-1+deb12u1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.2-1+b1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.2-6+deb12u2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.2-6+deb12u2 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-14 install ok installed libreadline8:amd64 libreadline8 8.2-1.3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg-10 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg-10 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.40.1-2 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libssh2-1:amd64 libssh2-1 1.10.0-3+b1 install ok installed libssl3:amd64 libssl3 3.0.13-1~deb12u2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.29-1~deb12u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libudev1:amd64 libudev1 252.29-1~deb12u1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed media-types media-types 10.0.0 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed openssl openssl 3.0.13-1~deb12u2 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl perl 5.36.0-7+deb12u1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed python3 python3 3.11.2-1+b1 install ok installed python3-adal python3-adal 1.2.7-2 install ok installed python3-aiohttp python3-aiohttp 3.8.4-1 install ok installed python3-aiosignal python3-aiosignal 1.3.1-1 install ok installed python3-appdirs python3-appdirs 1.4.4-3 install ok installed python3-async-timeout python3-async-timeout 4.0.2-1 install ok installed python3-attr python3-attr 22.2.0-1 install ok installed python3-avro python3-avro 1.11.1+dfsg-2 install ok installed python3-azure python3-azure 20230112+git-1 install ok installed python3-azure-storage python3-azure-storage 20230112+git-1 install ok installed python3-bcrypt python3-bcrypt 3.2.2-1 install ok installed python3-blinker python3-blinker 1.5-1 install ok installed python3-boto3 python3-boto3 1.26.27+dfsg-1 install ok installed python3-botocore python3-botocore 1.29.27+repack-1 install ok installed python3-certifi python3-certifi 2022.9.24-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.15.1-5+b1 install ok installed python3-chardet python3-chardet 5.1.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.0.1-2 install ok installed python3-colorama python3-colorama 0.4.6-2 install ok installed python3-configargparse python3-configargparse 1.5.3-1 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-cryptography python3-cryptography 38.0.4-3 install ok installed python3-dateutil python3-dateutil 2.8.2-2 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-4+b1 install ok installed python3-decorator python3-decorator 5.1.1-3 install ok installed python3-distutils python3-distutils 3.11.2-3 install ok installed python3-docutils python3-docutils 0.19+dfsg-6 install ok installed python3-fastjsonschema python3-fastjsonschema 2.16.3-2 install ok installed python3-frozenlist python3-frozenlist 1.3.3-1+b1 install ok installed python3-gi python3-gi 3.42.2-3+b1 install ok installed python3-git python3-git 3.1.30-1+deb12u2 install ok installed python3-gitdb python3-gitdb 4.0.9-2 install ok installed python3-humanfriendly python3-humanfriendly 10.0-3 install ok installed python3-idna python3-idna 3.3-1+deb12u1 install ok installed python3-isodate python3-isodate 0.6.1-1 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.10.3-1 install ok installed python3-jupyter-core python3-jupyter-core 4.12.0-1 install ok installed python3-jwt python3-jwt 2.6.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.2-3 install ok installed python3-markupsafe python3-markupsafe 2.1.2-1+b1 install ok installed python3-marshmallow python3-marshmallow 3.18.0-1 install ok installed python3-minimal python3-minimal 3.11.2-1+b1 install ok installed python3-msal python3-msal 1.21.0-1 install ok installed python3-msal-extensions python3-msal-extensions 1.0.0-2 install ok installed python3-msrest python3-msrest 0.6.21-2 install ok installed python3-msrestazure python3-msrestazure 0.6.4-2 install ok installed python3-multidict python3-multidict 6.0.4-1+b1 install ok installed python3-nacl python3-nacl 1.5.0-2 install ok installed python3-nbformat python3-nbformat 5.5.0-1 install ok installed python3-oauthlib python3-oauthlib 3.2.2-1 install ok installed python3-packaging python3-packaging 23.0-1 install ok installed python3-paramiko python3-paramiko 2.12.0-2 install ok installed python3-pkg-resources python3-pkg-resources 66.1.1-1 install ok installed python3-portalocker python3-portalocker 2.2.1-1 install ok installed python3-psutil python3-psutil 5.9.4-1+b1 install ok installed python3-pulp python3-pulp 2.6.0+dfsg-1 install ok installed python3-py python3-py 1.11.0-1 install ok installed python3-pyparsing python3-pyparsing 3.0.9-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.18.1-1+b3 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-4 install ok installed python3-requests python3-requests 2.28.1+dfsg-1 install ok installed python3-requests-oauthlib python3-requests-oauthlib 1.3.0+ds-1 install ok installed python3-retry python3-retry 0.9.2-2 install ok installed python3-roman python3-roman 3.3-3 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.17.21-1 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.7-1+b2 install ok installed python3-s3transfer python3-s3transfer 0.6.0-1 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-smart-open python3-smart-open 5.2.1-5 install ok installed python3-smmap python3-smmap 5.0.0-1 install ok installed python3-stopit python3-stopit 1.1.2-2 install ok installed python3-strictyaml python3-strictyaml 1.6.1-3 install ok installed python3-tabulate python3-tabulate 0.8.9-1 install ok installed python3-throttler python3-throttler 1.2.2-2 install ok installed python3-toposort python3-toposort 1.9-1 install ok installed python3-tqdm python3-tqdm 4.64.1-1 install ok installed python3-traitlets python3-traitlets 5.5.0-1 install ok installed python3-typing-extensions python3-typing-extensions 4.4.0-1 install ok installed python3-uamqp python3-uamqp 1.5.3-1+b4 install ok installed python3-urllib3 python3-urllib3 1.26.12-1 install ok installed python3-wrapt python3-wrapt 1.14.1-2+b2 install ok installed python3-yaml python3-yaml 6.0-3+b2 install ok installed python3-yarl python3-yarl 1.8.2-1+b1 install ok installed python3.11 python3.11 3.11.2-6+deb12u2 install ok installed python3.11-minimal python3.11-minimal 3.11.2-6+deb12u2 install ok installed readline-common readline-common 8.2-1.3 install ok installed sed sed 4.9-1 install ok installed sgml-base sgml-base 1.31 install ok installed snakemake snakemake 7.21.0-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 2m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pkg-resources', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core', 'snakemake'] 2m14.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings gir1.2-glib-2.0 git git-man libblas3 libbrotli1 libcurl3-gnutls libdatrie1 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgssapi-krb5-2 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 libncursesw6 libnghttp2-14 libnsl2 libperl5.36 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsodium23 libsqlite3-0 libssh2-1 libssl3 libtirpc-common libtirpc3 libyaml-0-2 media-types openssl perl perl-modules-5.36 python3 python3-adal python3-aiohttp python3-aiosignal python3-appdirs python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-bcrypt python3-blinker python3-boto3 python3-botocore python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-colorama python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-fastjsonschema python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-isodate python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-markupsafe python3-marshmallow python3-minimal python3-msal python3-msal-extensions python3-msrest python3-msrestazure python3-multidict python3-nacl python3-nbformat python3-oauthlib python3-packaging python3-paramiko python3-pkg-resources python3-portalocker python3-psutil python3-pulp python3-py python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-requests-oauthlib python3-retry python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-six python3-smart-open python3-smmap python3-stopit python3-strictyaml python3-tabulate python3-throttler python3-toposort python3-tqdm python3-traitlets python3-typing-extensions python3-uamqp python3-urllib3 python3-wrapt python3-yaml python3-yarl python3.11 python3.11-minimal readline-common sgml-base snakemake xml-core 0 upgraded, 0 newly installed, 147 to remove and 0 not upgraded. After this operation, 845 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44247 files and directories currently installed.) Removing snakemake (7.21.0-1) ... Removing python3-smart-open (5.2.1-5) ... Removing python3-pulp (2.6.0+dfsg-1) ... Removing coinor-cbc (2.10.8+ds1-1) ... Removing coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Removing coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Removing coinor-libclp1:amd64 (1.17.6-3) ... Removing coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Removing coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Removing python3-docutils (0.19+dfsg-6) ... Removing docutils-common (0.19+dfsg-6) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing python3-git (3.1.30-1+deb12u2) ... Removing git (1:2.39.2-1.1) ... Removing git-man (1:2.39.2-1.1) ... Removing liblapack3:amd64 (3.11.0-2) ... Removing libblas3:amd64 (3.11.0-2) ... Removing libcurl3-gnutls:amd64 (7.88.1-10+deb12u6) ... Removing libbrotli1:amd64 (1.0.9-2+b6) ... Removing python3-datrie:amd64 (0.8.2-4+b1) ... Removing libdatrie1:amd64 (0.2.13-2+b1) ... Removing liberror-perl (0.17029-2) ... Removing python3-nbformat (5.5.0-1) ... Removing python3-jupyter-core (4.12.0-1) ... Removing python3-distutils (3.11.2-3) ... Removing python3-traitlets (5.5.0-1) ... Removing perl (5.36.0-7+deb12u1) ... Removing libperl5.36:amd64 (5.36.0-7+deb12u1) ... Removing libgdbm-compat4:amd64 (1.23-3) ... Removing libgdbm6:amd64 (1.23-3) ... Removing libgfortran5:amd64 (12.2.0-14) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Removing libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Removing libpsl5:amd64 (0.21.2-1) ... Removing libquadmath0:amd64 (12.2.0-14) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg-10) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Removing python3-paramiko (2.12.0-2) ... Removing python3-nacl (1.5.0-2) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing libssh2-1:amd64 (1.10.0-3+b1) ... Removing perl-modules-5.36 (5.36.0-7+deb12u1) ... Removing python3-appdirs (1.4.4-3) ... Removing python3-bcrypt (3.2.2-1) ... Removing python3-boto3 (1.26.27+dfsg-1) ... Removing python3-s3transfer (0.6.0-1) ... Removing python3-botocore (1.29.27+repack-1) ... Removing python3-configargparse (1.5.3-1) ... Removing python3-connection-pool (0.0.3-2) ... Removing python3-retry (0.9.2-2) ... Removing python3-decorator (5.1.1-3) ... Removing python3-fastjsonschema (2.16.3-2) ... Removing python3-gitdb (4.0.9-2) ... Removing python3-humanfriendly (10.0-3) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-lib2to3 (3.11.2-3) ... Removing python3-markupsafe (2.1.2-1+b1) ... Removing python3-stopit (1.1.2-2) ... Removing python3-py (1.11.0-1) ... Removing python3-psutil (5.9.4-1+b1) ... Removing python3-pyparsing (3.0.9-1) ... Removing python3-ratelimiter (1.2.0.post0-4) ... Removing python3-roman (3.3-3) ... Removing python3-wrapt (1.14.1-2+b2) ... Removing python3-smmap (5.0.0-1) ... Removing python3-tabulate (0.8.9-1) ... Removing python3-throttler (1.2.2-2) ... Removing python3-toposort (1.9-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.31) ... Removing python3-azure (20230112+git-1) ... Removing python3-msal-extensions (1.0.0-2) ... Removing python3-gi (3.42.2-3+b1) ... Removing gir1.2-glib-2.0:amd64 (1.74.0-3) ... Removing python3-msrestazure (0.6.4-2) ... Removing python3-azure-storage (20230112+git-1) ... Removing python3-aiohttp (3.8.4-1) ... Removing python3-yarl (1.8.2-1+b1) ... Removing libgirepository-1.0-1:amd64 (1.74.0-3) ... Removing libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Removing python3-uamqp (1.5.3-1+b4) ... Removing python3-yaml (6.0-3+b2) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing python3-adal (1.2.7-2) ... Removing python3-aiosignal (1.3.1-1) ... Removing python3-async-timeout (4.0.2-1) ... Removing python3-jsonschema (4.10.3-1) ... Removing python3-attr (22.2.0-1) ... Removing python3-avro (1.11.1+dfsg-2) ... Removing python3-msal (1.21.0-1) ... Removing python3-colorama (0.4.6-2) ... Removing python3-strictyaml (1.6.1-3) ... Removing python3-dateutil (2.8.2-2) ... Removing python3-frozenlist (1.3.3-1+b1) ... Removing python3-marshmallow (3.18.0-1) ... Removing python3-multidict (6.0.4-1+b1) ... Removing python3-packaging (23.0-1) ... Removing python3-portalocker (2.2.1-1) ... Removing python3-pyrsistent:amd64 (0.18.1-1+b3) ... Removing python3-ruamel.yaml (0.17.21-1) ... Removing python3-ruamel.yaml.clib:amd64 (0.2.7-1+b2) ... Removing python3-tqdm (4.64.1-1) ... Removing python3-typing-extensions (4.4.0-1) ... Removing python3-msrest (0.6.21-2) ... Removing python3-requests-oauthlib (1.3.0+ds-1) ... Removing python3-oauthlib (3.2.2-1) ... Removing python3-cryptography (38.0.4-3) ... Removing python3-blinker (1.5-1) ... Removing python3-cffi-backend:amd64 (1.15.1-5+b1) ... Removing python3-isodate (0.6.1-1) ... Removing python3-jwt (2.6.0-1) ... Removing python3-requests (2.28.1+dfsg-1) ... Removing python3-certifi (2022.9.24-1) ... Removing python3-chardet (5.1.0+dfsg-2) ... Removing python3-charset-normalizer (3.0.1-2) ... Removing python3-idna (3.3-1+deb12u1) ... Removing python3-pkg-resources (66.1.1-1) ... Removing python3-urllib3 (1.26.12-1) ... Removing python3-six (1.16.0-4) ... Removing ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3 (3.11.2-1+b1) ... Removing python3.11 (3.11.2-6+deb12u2) ... Removing python3-minimal (3.11.2-1+b1) ... Removing python3.11-minimal (3.11.2-6+deb12u2) ... Removing libexpat1:amd64 (2.5.0-1) ... Removing libpython3-stdlib:amd64 (3.11.2-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-2) ... Removing libtirpc3:amd64 (1.3.3+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... Removing libkrb5-3:amd64 (1.20.1-2+deb12u2) ... Removing libk5crypto3:amd64 (1.20.1-2+deb12u2) ... Removing libkeyutils1:amd64 (1.6.3-2) ... Removing libkrb5support0:amd64 (1.20.1-2+deb12u2) ... Removing libncursesw6:amd64 (6.4-4) ... Removing libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-1.3) ... Removing libsqlite3-0:amd64 (3.40.1-2) ... Removing openssl (3.0.13-1~deb12u2) ... Removing libssl3:amd64 (3.0.13-1~deb12u2) ... Removing libtirpc-common (1.3.3+ds-1) ... Removing media-types (10.0.0) ... Removing readline-common (8.2-1.3) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pkg-resources', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core', 'snakemake'] 2m14.8s INFO: Running scripts post_remove 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_remove_exceptions'] 2m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_remove_exceptions'] 2m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pkg-resources', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core'] 2m15.0s DUMP: (Reading database ... 6110 files and directories currently installed.) Purging configuration files for ca-certificates (20230311) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed Purging configuration files for docutils-common (0.19+dfsg-6) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove gir1.2-glib-2.0 which isn't installed Purging configuration files for git (1:2.39.2-1.1) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgirepository-1.0-1 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-2+deb12u2) ... dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libperl5.36 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssl3 which isn't installed Purging configuration files for libtirpc-common (1.3.3+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (10.0.0) ... Purging configuration files for openssl (3.0.13-1~deb12u2) ... Purging configuration files for perl (5.36.0-7+deb12u1) ... dpkg: warning: ignoring request to remove perl-modules-5.36 which isn't installed Purging configuration files for python3 (3.11.2-1+b1) ... dpkg: warning: ignoring request to remove python3-adal which isn't installed dpkg: warning: ignoring request to remove python3-aiohttp which isn't installed dpkg: warning: ignoring request to remove python3-aiosignal which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-async-timeout which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-azure which isn't installed dpkg: warning: ignoring request to remove python3-azure-storage which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-connection-pool which isn't installed dpkg: warning: ignoring request to remove python3-cryptography which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-fastjsonschema which isn't installed dpkg: warning: ignoring request to remove python3-frozenlist which isn't installed dpkg: warning: ignoring request to remove python3-gi which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-humanfriendly which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.10.3-1) ... dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-jwt which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-marshmallow which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-msal which isn't installed dpkg: warning: ignoring request to remove python3-msal-extensions which isn't installed dpkg: warning: ignoring request to remove python3-msrest which isn't installed dpkg: warning: ignoring request to remove python3-msrestazure which isn't installed dpkg: warning: ignoring request to remove python3-multidict which isn't installed dpkg: warning: ignoring request to remove python3-nacl which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-paramiko which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-portalocker which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pulp which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-retry which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smart-open which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-stopit which isn't installed dpkg: warning: ignoring request to remove python3-strictyaml which isn't installed dpkg: warning: ignoring request to remove python3-tabulate which isn't installed dpkg: warning: ignoring request to remove python3-throttler which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-uamqp which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yarl which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.2-6+deb12u2) ... Purging configuration files for readline-common (8.2-1.3) ... Purging configuration files for sgml-base (1.31) ... Purging configuration files for xml-core (0.18+nmu1) ... 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgirepository-1.0-1:amd64', 'libglib2.0-0:amd64', 'libgssapi-krb5-2:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libperl5.36:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl3:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libyaml-0-2:amd64', 'media-types', 'openssl', 'perl', 'perl-modules-5.36', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-aiosignal', 'python3-appdirs', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-bcrypt', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-colorama', 'python3-configargparse', 'python3-connection-pool', 'python3-cryptography', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-fastjsonschema', 'python3-frozenlist', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-isodate', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-lib2to3', 'python3-markupsafe', 'python3-marshmallow', 'python3-minimal', 'python3-msal', 'python3-msal-extensions', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-nacl', 'python3-nbformat', 'python3-oauthlib', 'python3-packaging', 'python3-paramiko', 'python3-pkg-resources', 'python3-portalocker', 'python3-psutil', 'python3-pulp', 'python3-py', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-requests-oauthlib', 'python3-retry', 'python3-roman', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-six', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-strictyaml', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-tqdm', 'python3-traitlets', 'python3-typing-extensions', 'python3-uamqp', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yarl', 'python3.11', 'python3.11-minimal', 'readline-common', 'sgml-base', 'xml-core'] 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--purge', 'snakemake'] 2m15.0s DUMP: dpkg: warning: ignoring request to remove snakemake which isn't installed 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--purge', 'snakemake'] 2m15.0s INFO: Running scripts post_purge 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_purge_exceptions'] 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_purge_exceptions'] 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--purge', '--pending'] 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--purge', '--pending'] 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--remove', '--pending'] 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg', '--remove', '--pending'] 2m15.0s INFO: Running scripts post_test 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_test_exceptions'] 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'tmp/scripts/post_test_exceptions'] 2m15.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 2m15.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 2m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg-divert', '--list'] 2m15.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'dpkg-divert', '--list'] 2m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'clean'] 2m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprns8snof', 'apt-get', 'clean'] 2m15.5s DEBUG: Recording chroot state 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/shm'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/shm'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/console'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/console'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/ptmx'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/ptmx'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/pts'] 2m16.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/dev/pts'] 2m16.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/proc'] 2m16.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprns8snof/proc'] 2m16.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 2m16.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprns8snof'] 2m16.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmprns8snof 2m16.7s INFO: PASS: Upgrading between Debian distributions. 2m16.7s INFO: PASS: All tests. 2m16.7s INFO: piuparts run ends. ret=0 End: 2024-08-21 21:18:03 GMT