Start: 2024-05-10 06:28:05 GMT Package: cnvkit Version: 0.9.8-1 Installed-Size: 69059 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-pomegranate, python3-pyfaidx, python3-pysam, python3-reportlab, python3-scipy, python3-sklearn, python3:any, r-bioc-dnacopy Description: Copy number variant detection from targeted DNA sequencing Homepage: http://cnvkit.readthedocs.org Description-md5: 0b8ab5ba6be9de3379277ab7a92a7b5d Section: science Priority: optional Filename: pool/main/c/cnvkit/cnvkit_0.9.8-1_amd64.deb Size: 15426740 MD5sum: 6647858ecca063375d0e870f2169eb9b SHA256: b015c3352c86bffb17381dea0be72d3284ad785d74a7e4c3e3ac4684e99ee493 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt cnvkit=0.9.8-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt cnvkit=0.9.8-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-29-amd64 #1 SMP Debian 5.10.216-1 (2024-05-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpr3cja2kr 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpr3cja2kr 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpr3cja2kr/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'clean'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'clean'] 0m3.7s DEBUG: Recording chroot state 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-divert', '--list'] 0m4.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 0m5.3s DEBUG: No broken symlinks as far as we can find. 0m5.3s INFO: Running scripts pre_install 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_extras'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_extras'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 0m6.1s DEBUG: No broken symlinks as far as we can find. 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-cache', 'policy'] 0m7.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-cache', 'policy'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-cache', 'policy', 'cnvkit'] 0m7.1s DUMP: cnvkit: Installed: (none) Candidate: 0.9.8-1 Version table: 0.9.8-1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-cache', 'policy', 'cnvkit'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', '-y', 'install', 'cnvkit=0.9.8-1'] 2m18.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adwaita-icon-theme at-spi2-core binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates cpp cpp-10 dbus dbus-user-session dconf-gsettings-backend dconf-service dirmngr dmsetup dpkg-dev fakeroot file fontconfig fontconfig-config fonts-font-awesome fonts-lato fonts-liberation fonts-lyx fonts-urw-base35 g++ g++-10 gcc gcc-10 gdal-data gfortran gfortran-10 glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme icu-devtools javascript-common libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom0 libapparmor1 libargon2-1 libarmadillo10 libarpack2 libasan6 libassuan0 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbinutils libblas-dev libblas3 libblosc1 libbrotli1 libbsd0 libbz2-dev libc-dev-bin libc-devtools libc6-dev libcairo-gobject2 libcairo2 libcap2 libcc1-0 libcdt5 libcfitsio9 libcgraph6 libcharls2 libclang-cpp9 libclone-perl libcolord2 libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdap27 libdapclient6v5 libdata-dump-perl libdatrie1 libdav1d4 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libepoxy0 libepsilon1 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0 libgcc-10-dev libgd3 libgdal28 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgeos-3.9.0 libgeos-c1v5 libgeotiff5 libgfortran-10-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgtk-3-0 libgtk-3-bin libgtk-3-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu67 libimagequant0 libio-html-perl libio-socket-ssl-perl libio-stringy-perl libip4tc2 libipc-system-simple-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libkmlbase1 libkmldom1 libkmlengine1 libkmod2 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm11 libllvm9 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libminizip1 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf18 libnghttp2-14 libnpth0 libnsl-dev libnspr4 libnss-systemd libnss3 libnuma1 libodbc1 libogdi4.1 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.32 libpfm4 libpipeline1 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpoppler102 libpq5 libprocps8 libproj19 libproxy1v5 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull8.0 libquadmath0 libreadline-dev libreadline8 librest-0.7-0 librsvg2-2 librsvg2-common librtmp1 librttopo1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsm6 libsnappy1v5 libsoup-gnome2.4-1 libsoup2.4-1 libspatialite7 libsqlite3-0 libssh2-1 libstdc++-10-dev libsuperlu5 libsz2 libtbb2 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtirpc-dev libtk8.6 libtry-tiny-perl libtsan0 libubsan1 liburi-perl liburiparser1 libvte-2.91-0 libvte-2.91-common libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-192 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-9 llvm-9-dev llvm-9-runtime llvm-9-tools mailcap make manpages manpages-dev mariadb-common media-types mesa-vulkan-drivers mime-support mysql-common ncbi-blast+ ncbi-data netbase numba-doc odbcinst odbcinst1debian2 openssl patch perl perl-modules-5.32 perl-openssl-defaults pinentry-curses pkg-config poppler-data procps proj-bin proj-data psmisc publicsuffix python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-pip-whl python-tables-data python3 python3-attr python3-biopython python3-bottleneck python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-gdal python3-html5lib python3-importlib-metadata python3-iniconfig python3-jdcal python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-networkx python3-nose python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pkg-resources python3-pluggy python3-pomegranate python3-psutil python3-py python3-pydot python3-pyfaidx python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-simplejson python3-six python3-sklearn python3-sklearn-lib python3-soupsieve python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-toml python3-tz python3-webencodings python3-wheel python3-xlwt python3-yaml python3-zipp python3.9 python3.9-dev python3.9-minimal r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-runit r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common sensible-utils shared-mime-info sphinx-rtd-theme-common systemd systemd-sysv systemd-timesyncd termit tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xkb-data xz-utils zip zlib1g-dev Suggested packages: binutils-doc blt-demo cpp-doc gcc-10-locales pinentry-gnome3 tor debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-10-multilib gcc-10-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-10-multilib gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev parcimonie xloadimage scdaemon gsfonts graphviz-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl liblapack-doc glibc-doc colord cups-common git bzr libgd-tools gdbm-l10n geotiff-bin gdal-bin libgeotiff-epsg gpm gvfs libhdf4-doc libhdf4-alt-dev hdf4-tools icu-doc libjs-jquery-ui-docs liblcms2-utils libcrypt-ssleay-perl liblzma-doc ncurses-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin pciutils readline-doc librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors libstdc++-10-doc tcl8.6 tk8.6 libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools llvm-9-doc make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl pinentry-doc poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml python-bottleneck-doc python-cycler-doc python3-genshi python-jinja2-doc llvmlite-doc python3-lxml-dbg python-lxml-doc dvipng ffmpeg gir1.2-gtk-3.0 inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-networkx-doc python-nose-doc nvidia-cuda-toolkit python-numpy-doc python3-numpy-dbg python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg python-pomegranate-doc python-psutil-doc subversion python-pygments-doc python-pygraphviz-doc python-pyparsing-doc python3-renderpm-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc python3-dap python-sklearn-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3-xlrd python-xlrt-doc python3.9-venv python3.9-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-latex-recommended texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate mozilla | www-browser systemd-container policykit-1 mesa-utils nickle cairo-5c xorg-docs-core The following NEW packages will be installed: adwaita-icon-theme at-spi2-core binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates cnvkit cpp cpp-10 dbus dbus-user-session dconf-gsettings-backend dconf-service dirmngr dmsetup dpkg-dev fakeroot file fontconfig fontconfig-config fonts-font-awesome fonts-lato fonts-liberation fonts-lyx fonts-urw-base35 g++ g++-10 gcc gcc-10 gdal-data gfortran gfortran-10 glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme icu-devtools javascript-common libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom0 libapparmor1 libargon2-1 libarmadillo10 libarpack2 libasan6 libassuan0 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbinutils libblas-dev libblas3 libblosc1 libbrotli1 libbsd0 libbz2-dev libc-dev-bin libc-devtools libc6-dev libcairo-gobject2 libcairo2 libcap2 libcc1-0 libcdt5 libcfitsio9 libcgraph6 libcharls2 libclang-cpp9 libclone-perl libcolord2 libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdap27 libdapclient6v5 libdata-dump-perl libdatrie1 libdav1d4 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libepoxy0 libepsilon1 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0 libgcc-10-dev libgd3 libgdal28 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgeos-3.9.0 libgeos-c1v5 libgeotiff5 libgfortran-10-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgtk-3-0 libgtk-3-bin libgtk-3-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu67 libimagequant0 libio-html-perl libio-socket-ssl-perl libio-stringy-perl libip4tc2 libipc-system-simple-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libkmlbase1 libkmldom1 libkmlengine1 libkmod2 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm11 libllvm9 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libminizip1 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf18 libnghttp2-14 libnpth0 libnsl-dev libnspr4 libnss-systemd libnss3 libnuma1 libodbc1 libogdi4.1 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.32 libpfm4 libpipeline1 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpoppler102 libpq5 libprocps8 libproj19 libproxy1v5 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull8.0 libquadmath0 libreadline-dev libreadline8 librest-0.7-0 librsvg2-2 librsvg2-common librtmp1 librttopo1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsm6 libsnappy1v5 libsoup-gnome2.4-1 libsoup2.4-1 libspatialite7 libsqlite3-0 libssh2-1 libstdc++-10-dev libsuperlu5 libsz2 libtbb2 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtirpc-dev libtk8.6 libtry-tiny-perl libtsan0 libubsan1 liburi-perl liburiparser1 libvte-2.91-0 libvte-2.91-common libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-192 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-9 llvm-9-dev llvm-9-runtime llvm-9-tools mailcap make manpages manpages-dev mariadb-common media-types mesa-vulkan-drivers mime-support mysql-common ncbi-blast+ ncbi-data netbase numba-doc odbcinst odbcinst1debian2 openssl patch perl perl-modules-5.32 perl-openssl-defaults pinentry-curses pkg-config poppler-data procps proj-bin proj-data psmisc publicsuffix python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-pip-whl python-tables-data python3 python3-attr python3-biopython python3-bottleneck python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-gdal python3-html5lib python3-importlib-metadata python3-iniconfig python3-jdcal python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-networkx python3-nose python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pkg-resources python3-pluggy python3-pomegranate python3-psutil python3-py python3-pydot python3-pyfaidx python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-simplejson python3-six python3-sklearn python3-sklearn-lib python3-soupsieve python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-toml python3-tz python3-webencodings python3-wheel python3-xlwt python3-yaml python3-zipp python3.9 python3.9-dev python3.9-minimal r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-runit r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common sensible-utils shared-mime-info sphinx-rtd-theme-common systemd systemd-sysv systemd-timesyncd termit tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xkb-data xz-utils zip zlib1g-dev 0 upgraded, 561 newly installed, 0 to remove and 0 not upgraded. Need to get 482 MB of archives. After this operation, 1899 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libapparmor1 amd64 2.13.6-10 [99.3 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.6 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 dmsetup amd64 2:1.02.175-2.1 [92.1 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2.1 [143 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libjson-c5 amd64 0.15-2+deb11u1 [42.9 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libcryptsetup12 amd64 2:2.3.7-1+deb11u1 [248 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libip4tc2 amd64 1.8.7-1 [34.6 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libkmod2 amd64 28-1 [55.6 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 systemd amd64 247.3-7+deb11u4 [4502 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 systemd-sysv amd64 247.3-7+deb11u4 [114 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 dbus amd64 1.12.28-0+deb11u1 [244 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 poppler-data all 0.4.10-1 [1602 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libnss-systemd amd64 247.3-7+deb11u4 [199 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libpam-systemd amd64 247.3-7+deb11u4 [283 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 manpages all 5.10-1 [1412 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 systemd-timesyncd amd64 247.3-7+deb11u4 [131 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 xz-utils amd64 5.2.5-2.1~deb11u1 [220 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u1 [147 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 gtk-update-icon-cache amd64 3.24.24-4+deb11u3 [88.4 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 adwaita-icon-theme all 3.38.0-1 [10.9 MB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libatspi2.0-0 amd64 2.38.0-4+deb11u1 [72.4 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 at-spi2-core amd64 2.38.0-4+deb11u1 [72.5 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 binfmt-support amd64 2.2.1-1+deb11u1 [66.8 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 binutils-common amd64 2.35.2-2 [2220 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libbinutils amd64 2.35.2-2 [570 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libctf-nobfd0 amd64 2.35.2-2 [110 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libctf0 amd64 2.35.2-2 [53.2 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 binutils-x86-64-linux-gnu amd64 2.35.2-2 [1809 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 binutils amd64 2.35.2-2 [61.2 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 fonts-liberation all 1:1.07.4-11 [828 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u8 [276 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.209-2 [1698 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u8 [2361 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libisl23 amd64 0.23-1 [676 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libmpc3 amd64 1.2.0-1 [45.0 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 cpp-10 amd64 10.2.1-6 [8528 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 cpp amd64 4:10.2.1-1 [19.7 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libcc1-0 amd64 10.2.1-6 [47.0 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:120 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 gcc-10 amd64 10.2.1-6 [17.0 MB] Get:127 http://deb.debian.org/debian bullseye/main amd64 gcc amd64 4:10.2.1-1 [5192 B] Get:128 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:131 http://deb.debian.org/debian bullseye/main amd64 make amd64 4.3-4.1 [396 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libdpkg-perl all 1.20.13 [1552 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 patch amd64 2.7.6-7 [128 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 dpkg-dev all 1.20.13 [2314 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 build-essential amd64 12.9 [7704 B] Get:136 http://deb.debian.org/debian bullseye/main amd64 bzip2-doc all 1.0.8-4 [514 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:158 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 python3-pomegranate amd64 0.13.5-1 [2482 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 python3-pyfaidx all 0.5.9.2-1 [26.4 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn-lib amd64 0.23.2-5 [1884 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn all 0.23.2-5 [1818 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:209 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 r-bioc-dnacopy amd64 1.64.0-1 [420 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 cnvkit amd64 0.9.8-1 [15.4 MB] Get:212 http://deb.debian.org/debian bullseye/main amd64 dbus-user-session amd64 1.12.28-0+deb11u1 [100 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 libdconf1 amd64 0.38.0-2 [43.5 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 dconf-service amd64 0.38.0-2 [37.4 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 dconf-gsettings-backend amd64 0.38.0-2 [30.6 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 gpgconf amd64 2.2.27-2+deb11u2 [548 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 libksba8 amd64 1.5.0-3+deb11u2 [123 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 libnpth0 amd64 1.6-3 [19.0 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 dirmngr amd64 2.2.27-2+deb11u2 [763 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 gdal-data all 3.2.2+dfsg-2+deb11u2 [462 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 libgfortran-10-dev amd64 10.2.1-6 [769 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 gfortran-10 amd64 10.2.1-6 [9447 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 gfortran amd64 4:10.2.1-1 [1428 B] Get:228 http://deb.debian.org/debian bullseye/main amd64 libproxy1v5 amd64 0.4.17-1 [59.5 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 glib-networking-common all 2.66.0-2 [68.1 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 glib-networking-services amd64 2.66.0-2 [17.5 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 gsettings-desktop-schemas all 3.38.0-2 [588 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 glib-networking amd64 2.66.0-2 [67.6 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 gnupg-l10n all 2.2.27-2+deb11u2 [1086 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 gnupg-utils amd64 2.2.27-2+deb11u2 [905 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 gpg amd64 2.2.27-2+deb11u2 [928 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 pinentry-curses amd64 1.1.0-4 [64.9 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 gpg-agent amd64 2.2.27-2+deb11u2 [669 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-client amd64 2.2.27-2+deb11u2 [524 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-server amd64 2.2.27-2+deb11u2 [516 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 gpgsm amd64 2.2.27-2+deb11u2 [645 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 gnupg all 2.2.27-2+deb11u2 [825 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 libcdt5 amd64 2.42.2-5 [62.2 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 libcgraph6 amd64 2.42.2-5 [85.5 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 libpathplan4 amd64 2.42.2-5 [64.3 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 libgvc6 amd64 2.42.2-5 [695 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 libgvpr2 amd64 2.42.2-5 [212 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 liblab-gamut1 amd64 2.42.2-5 [221 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 graphviz amd64 2.42.2-5 [632 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 javascript-common all 11+nmu1 [6260 B] Get:258 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-xs-perl amd64 0.04-6+b1 [12.0 kB] Get:261 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 libaom0 amd64 1.0.0.errata1-3+deb11u1 [1120 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 libarpack2 amd64 3.8.0-1 [103 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 libsuperlu5 amd64 5.2.2+dfsg1-2 [163 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 libarmadillo10 amd64 1:10.1.2+dfsg-6+b1 [98.8 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 libatk1.0-data all 2.36.0-2 [149 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 libatk1.0-0 amd64 2.36.0-2 [52.2 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 libatk-bridge2.0-0 amd64 2.38.0-1 [64.6 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 libauthen-sasl-perl all 2.1600-1.1 [45.4 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 libblas-dev amd64 3.9.0-3+deb11u1 [161 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 libblosc1 amd64 1.20.1+ds1-2 [48.7 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 libc-devtools amd64 2.31-13+deb11u8 [246 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 libcairo-gobject2 amd64 1.16.0-5 [125 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 libcfitsio9 amd64 3.490-3 [554 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 libcharls2 amd64 2.2.0+dfsg-2 [79.4 kB] Get:281 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:282 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:283 http://deb.debian.org/debian bullseye/main amd64 libllvm9 amd64 1:9.0.1-16.1 [14.9 MB] Get:284 http://deb.debian.org/debian bullseye/main amd64 libclang-cpp9 amd64 1:9.0.1-16.1 [8421 kB] Get:285 http://deb.debian.org/debian bullseye/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:286 http://deb.debian.org/debian bullseye/main amd64 libcolord2 amd64 1.4.5-3 [144 kB] Get:287 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:288 http://deb.debian.org/debian bullseye/main amd64 libdap27 amd64 3.20.7-6 [566 kB] Get:289 http://deb.debian.org/debian bullseye/main amd64 libdapclient6v5 amd64 3.20.7-6 [208 kB] Get:290 http://deb.debian.org/debian bullseye/main amd64 libdata-dump-perl all 1.23-1.1 [27.6 kB] Get:291 http://deb.debian.org/debian bullseye/main amd64 libdav1d4 amd64 0.7.1-3 [333 kB] Get:292 http://deb.debian.org/debian bullseye/main amd64 libde265-0 amd64 1.0.11-0+deb11u3 [180 kB] Get:293 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:294 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get:295 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get:296 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:297 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get:298 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get:299 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get:300 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:301 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:302 http://deb.debian.org/debian bullseye/main amd64 libepoxy0 amd64 1.5.5-1 [193 kB] Get:303 http://deb.debian.org/debian bullseye/main amd64 libepsilon1 amd64 0.9.2+dfsg-5 [41.9 kB] Get:304 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get:305 http://deb.debian.org/debian bullseye/main amd64 libffi-dev amd64 3.3-6 [56.5 kB] Get:306 http://deb.debian.org/debian bullseye/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:307 http://deb.debian.org/debian bullseye/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:308 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:309 http://deb.debian.org/debian bullseye/main amd64 libfile-desktopentry-perl all 0.22-2 [19.1 kB] Get:310 http://deb.debian.org/debian bullseye/main amd64 libfile-fcntllock-perl amd64 0.22-3+b7 [35.5 kB] Get:311 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:312 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:313 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:314 http://deb.debian.org/debian bullseye/main amd64 libfile-mimeinfo-perl all 0.30-1 [48.0 kB] Get:315 http://deb.debian.org/debian bullseye/main amd64 libfont-afm-perl all 1.20-3 [14.0 kB] Get:316 http://deb.debian.org/debian bullseye/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:317 http://deb.debian.org/debian bullseye/main amd64 libfreexl1 amd64 1.0.6-1 [34.2 kB] Get:318 http://deb.debian.org/debian bullseye/main amd64 libfyba0 amd64 4.1.1-7 [114 kB] Get:319 http://deb.debian.org/debian bullseye/main amd64 libgeos-3.9.0 amd64 3.9.0-1 [921 kB] Get:320 http://deb.debian.org/debian bullseye/main amd64 libgeos-c1v5 amd64 3.9.0-1 [377 kB] Get:321 http://deb.debian.org/debian bullseye/main amd64 proj-data all 7.2.1-1 [7940 kB] Get:322 http://deb.debian.org/debian bullseye/main amd64 libproj19 amd64 7.2.1-1 [1132 kB] Get:323 http://deb.debian.org/debian bullseye/main amd64 libgeotiff5 amd64 1.6.0-1 [70.3 kB] Get:324 http://deb.debian.org/debian bullseye/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:325 http://deb.debian.org/debian bullseye/main amd64 libhdf4-0-alt amd64 4.2.15-3 [278 kB] Get:326 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:327 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:328 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:329 http://deb.debian.org/debian bullseye/main amd64 libx265-192 amd64 3.4-2 [1095 kB] Get:330 http://deb.debian.org/debian bullseye/main amd64 libheif1 amd64 1.11.0-1 [191 kB] Get:331 http://deb.debian.org/debian bullseye/main amd64 libminizip1 amd64 1.1-8+deb11u1 [20.1 kB] Get:332 http://deb.debian.org/debian bullseye/main amd64 liburiparser1 amd64 0.9.4+dfsg-1+deb11u1 [45.9 kB] Get:333 http://deb.debian.org/debian bullseye/main amd64 libkmlbase1 amd64 1.3.0-9 [48.7 kB] Get:334 http://deb.debian.org/debian bullseye/main amd64 libkmldom1 amd64 1.3.0-9 [156 kB] Get:335 http://deb.debian.org/debian bullseye/main amd64 libkmlengine1 amd64 1.3.0-9 [77.7 kB] Get:336 http://deb.debian.org/debian bullseye/main amd64 mysql-common all 5.8+1.0.7 [7464 B] Get:337 http://deb.debian.org/debian bullseye/main amd64 mariadb-common all 1:10.5.23-0+deb11u1 [37.2 kB] Get:338 http://deb.debian.org/debian bullseye/main amd64 libmariadb3 amd64 1:10.5.23-0+deb11u1 [176 kB] Get:339 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get:340 http://deb.debian.org/debian bullseye/main amd64 libnetcdf18 amd64 1:4.7.4-1 [399 kB] Get:341 http://deb.debian.org/debian bullseye/main amd64 libodbc1 amd64 2.3.6-0.1+b1 [224 kB] Get:342 http://deb.debian.org/debian bullseye/main amd64 libogdi4.1 amd64 4.1.0+ds-5 [213 kB] Get:343 http://deb.debian.org/debian bullseye/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get:344 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:345 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:346 http://deb.debian.org/debian bullseye/main amd64 libpoppler102 amd64 20.09.0-3.1+deb11u1 [1676 kB] Get:347 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.13-0+deb11u1 [182 kB] Get:348 http://deb.debian.org/debian bullseye/main amd64 libqhull8.0 amd64 2020.2-3 [246 kB] Get:349 http://deb.debian.org/debian bullseye/main amd64 librttopo1 amd64 1.1.0-2 [180 kB] Get:350 http://deb.debian.org/debian bullseye/main amd64 libspatialite7 amd64 5.0.1-2 [1796 kB] Get:351 http://deb.debian.org/debian bullseye/main amd64 libxerces-c3.2 amd64 3.2.3+debian-3+deb11u1 [870 kB] Get:352 http://deb.debian.org/debian bullseye/main amd64 odbcinst amd64 2.3.6-0.1+b1 [48.7 kB] Get:353 http://deb.debian.org/debian bullseye/main amd64 odbcinst1debian2 amd64 2.3.6-0.1+b1 [78.6 kB] Get:354 http://deb.debian.org/debian bullseye/main amd64 libgdal28 amd64 3.2.2+dfsg-2+deb11u2 [7256 kB] Get:355 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-bin amd64 2.42.2+dfsg-1+deb11u1 [25.7 kB] Get:356 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get:357 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get:358 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:359 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:360 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get:361 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get:362 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-data all 2.66.8-1+deb11u1 [1177 kB] Get:363 http://deb.debian.org/debian bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:364 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1+deb11u2 [204 kB] Get:365 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:366 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:367 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:368 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:369 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:370 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:371 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:372 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:373 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:374 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:375 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get:376 http://deb.debian.org/debian bullseye/main amd64 libgpm2 amd64 1.20.7-8 [35.6 kB] Get:377 http://deb.debian.org/debian bullseye/main amd64 libjson-glib-1.0-common all 1.6.2-1 [56.9 kB] Get:378 http://deb.debian.org/debian bullseye/main amd64 libjson-glib-1.0-0 amd64 1.6.2-1 [65.4 kB] Get:379 http://deb.debian.org/debian bullseye/main amd64 libsoup2.4-1 amd64 2.72.0-2 [280 kB] Get:380 http://deb.debian.org/debian bullseye/main amd64 libsoup-gnome2.4-1 amd64 2.72.0-2 [22.2 kB] Get:381 http://deb.debian.org/debian bullseye/main amd64 librest-0.7-0 amd64 0.8.1-1.1 [33.8 kB] Get:382 http://deb.debian.org/debian bullseye/main amd64 libwayland-client0 amd64 1.18.0-2~exp1.1 [26.9 kB] Get:383 http://deb.debian.org/debian bullseye/main amd64 libwayland-cursor0 amd64 1.18.0-2~exp1.1 [14.6 kB] Get:384 http://deb.debian.org/debian bullseye/main amd64 libwayland-egl1 amd64 1.18.0-2~exp1.1 [8448 B] Get:385 http://deb.debian.org/debian bullseye/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:386 http://deb.debian.org/debian bullseye/main amd64 libxcursor1 amd64 1:1.2.0-2 [37.3 kB] Get:387 http://deb.debian.org/debian bullseye/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get:388 http://deb.debian.org/debian bullseye/main amd64 xkb-data all 2.29-2 [655 kB] Get:389 http://deb.debian.org/debian bullseye/main amd64 libxkbcommon0 amd64 1.0.3-2 [101 kB] Get:390 http://deb.debian.org/debian bullseye/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:391 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-common all 3.24.24-4+deb11u3 [3757 kB] Get:392 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-0 amd64 3.24.24-4+deb11u3 [2716 kB] Get:393 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-bin amd64 3.24.24-4+deb11u3 [125 kB] Get:394 http://deb.debian.org/debian bullseye/main amd64 libgts-bin amd64 0.7.6+darcs121130-4+b1 [50.3 kB] Get:395 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:396 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get:397 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:398 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:399 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get:400 http://deb.debian.org/debian bullseye/main amd64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:401 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:402 http://deb.debian.org/debian bullseye/main amd64 libhtml-format-perl all 2.12-1.1 [43.8 kB] Get:403 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:404 http://deb.debian.org/debian bullseye/main amd64 libhttp-daemon-perl all 6.12-1+deb11u1 [23.4 kB] Get:405 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:406 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get:407 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:408 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get:409 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get:410 http://deb.debian.org/debian bullseye/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:411 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get:412 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get:413 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:414 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:415 http://deb.debian.org/debian bullseye/main amd64 liblapack-dev amd64 3.9.0-3+deb11u1 [4246 kB] Get:416 http://deb.debian.org/debian bullseye/main amd64 libldap-common all 2.4.57+dfsg-3+deb11u1 [95.8 kB] Get:417 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:418 http://deb.debian.org/debian bullseye/main amd64 liblua5.3-0 amd64 5.3.3-1.1+deb11u1 [123 kB] Get:419 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get:420 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:421 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:422 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get:423 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:424 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2.1~deb11u1 [229 kB] Get:425 http://deb.debian.org/debian bullseye/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:426 http://deb.debian.org/debian bullseye/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:427 http://deb.debian.org/debian bullseye/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:428 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:429 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:430 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:431 http://deb.debian.org/debian bullseye/main amd64 libncurses-dev amd64 6.2+20201114-2+deb11u2 [344 kB] Get:432 http://deb.debian.org/debian bullseye/main amd64 libxml-parser-perl amd64 2.46-2 [206 kB] Get:433 http://deb.debian.org/debian bullseye/main amd64 libxml-twig-perl all 1:3.52-1 [181 kB] Get:434 http://deb.debian.org/debian bullseye/main amd64 libnet-dbus-perl amd64 1.2.0-1+b1 [182 kB] Get:435 http://deb.debian.org/debian bullseye/main amd64 libpcre16-3 amd64 2:8.39-13 [259 kB] Get:436 http://deb.debian.org/debian bullseye/main amd64 libpcre2-16-0 amd64 10.36-2+deb11u1 [232 kB] Get:437 http://deb.debian.org/debian bullseye/main amd64 libpcre2-32-0 amd64 10.36-2+deb11u1 [220 kB] Get:438 http://deb.debian.org/debian bullseye/main amd64 libpcre2-posix2 amd64 10.36-2+deb11u1 [49.1 kB] Get:439 http://deb.debian.org/debian bullseye/main amd64 libpcre2-dev amd64 10.36-2+deb11u1 [733 kB] Get:440 http://deb.debian.org/debian bullseye/main amd64 libpcre32-3 amd64 2:8.39-13 [250 kB] Get:441 http://deb.debian.org/debian bullseye/main amd64 libpcrecpp0v5 amd64 2:8.39-13 [152 kB] Get:442 http://deb.debian.org/debian bullseye/main amd64 libpcre3-dev amd64 2:8.39-13 [650 kB] Get:443 http://deb.debian.org/debian bullseye/main amd64 libpfm4 amd64 4.11.1+git32-gd0b85fb-1 [286 kB] Get:444 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:445 http://deb.debian.org/debian bullseye/main amd64 libpng-dev amd64 1.6.37-3 [298 kB] Get:446 http://deb.debian.org/debian bullseye/main amd64 libpng-tools amd64 1.6.37-3 [141 kB] Get:447 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get:448 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get:449 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get:450 http://deb.debian.org/debian bullseye/main amd64 libreadline-dev amd64 8.1-1 [148 kB] Get:451 http://deb.debian.org/debian bullseye/main amd64 librsvg2-2 amd64 2.50.3+dfsg-1+deb11u1 [2462 kB] Get:452 http://deb.debian.org/debian bullseye/main amd64 librsvg2-common amd64 2.50.3+dfsg-1+deb11u1 [31.2 kB] Get:453 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules amd64 2.1.27+dfsg-2.1+deb11u1 [104 kB] Get:454 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:455 http://deb.debian.org/debian bullseye/main amd64 libtext-iconv-perl amd64 1.7-7+b1 [16.1 kB] Get:456 http://deb.debian.org/debian bullseye/main amd64 libtie-ixhash-perl all 1.23-2.1 [11.8 kB] Get:457 http://deb.debian.org/debian bullseye/main amd64 libtinfo-dev amd64 6.2+20201114-2+deb11u2 [940 B] Get:458 http://deb.debian.org/debian bullseye/main amd64 libvte-2.91-common amd64 0.62.3-1 [64.8 kB] Get:459 http://deb.debian.org/debian bullseye/main amd64 libvte-2.91-0 amd64 0.62.3-1 [209 kB] Get:460 http://deb.debian.org/debian bullseye/main amd64 libx11-protocol-perl all 0.56-7.1 [140 kB] Get:461 http://deb.debian.org/debian bullseye/main amd64 libxcb-randr0 amd64 1.14-3 [113 kB] Get:462 http://deb.debian.org/debian bullseye/main amd64 libxcb-shape0 amd64 1.14-3 [102 kB] Get:463 http://deb.debian.org/debian bullseye/main amd64 libxkbfile1 amd64 1:1.1.0-1 [75.2 kB] Get:464 http://deb.debian.org/debian bullseye/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:465 http://deb.debian.org/debian bullseye/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:466 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get:467 http://deb.debian.org/debian bullseye/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:468 http://deb.debian.org/debian bullseye/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:469 http://deb.debian.org/debian bullseye/main amd64 libz3-dev amd64 4.8.10-1 [90.8 kB] Get:470 http://deb.debian.org/debian bullseye/main amd64 llvm-9-runtime amd64 1:9.0.1-16.1 [213 kB] Get:471 http://deb.debian.org/debian bullseye/main amd64 llvm-9 amd64 1:9.0.1-16.1 [4851 kB] Get:472 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:473 http://deb.debian.org/debian bullseye/main amd64 llvm-9-tools amd64 1:9.0.1-16.1 [330 kB] Get:474 http://deb.debian.org/debian bullseye/main amd64 llvm-9-dev amd64 1:9.0.1-16.1 [24.4 MB] Get:475 http://deb.debian.org/debian bullseye/main amd64 manpages-dev all 5.10-1 [2309 kB] Get:476 http://deb.debian.org/debian bullseye/main amd64 mesa-vulkan-drivers amd64 20.3.5-1 [4086 kB] Get:477 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:478 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:479 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:480 http://deb.debian.org/debian bullseye/main amd64 numba-doc all 0.52.0-4 [756 kB] Get:481 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:482 http://deb.debian.org/debian bullseye/main amd64 proj-bin amd64 7.2.1-1 [189 kB] Get:483 http://deb.debian.org/debian bullseye/main amd64 psmisc amd64 23.4-2 [198 kB] Get:484 http://deb.debian.org/debian bullseye/main amd64 publicsuffix all 20220811.1734-0+deb11u1 [127 kB] Get:485 http://deb.debian.org/debian bullseye/main amd64 python-biopython-doc all 1.78+dfsg-4 [15.0 MB] Get:486 http://deb.debian.org/debian bullseye/main amd64 python-odf-doc all 1.4.1-1 [244 kB] Get:487 http://deb.debian.org/debian bullseye/main amd64 python3-defusedxml all 0.6.0-2 [38.2 kB] Get:488 http://deb.debian.org/debian bullseye/main amd64 python3-odf all 1.4.1-1 [79.7 kB] Get:489 http://deb.debian.org/debian bullseye/main amd64 python-odf-tools all 1.4.1-1 [29.8 kB] Get:490 http://deb.debian.org/debian bullseye/main amd64 python-pip-whl all 20.3.4-4+deb11u1 [1948 kB] Get:491 http://deb.debian.org/debian bullseye/main amd64 python-tables-data all 3.6.1-3 [53.1 kB] Get:492 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:493 http://deb.debian.org/debian bullseye/main amd64 python3-bottleneck amd64 1.2.1+ds1-2+b4 [77.3 kB] Get:494 http://deb.debian.org/debian bullseye/main amd64 python3-soupsieve all 2.2.1-1 [34.7 kB] Get:495 http://deb.debian.org/debian bullseye/main amd64 python3-bs4 all 4.9.3-1 [112 kB] Get:496 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:497 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get:498 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:499 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:500 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get:501 http://deb.debian.org/debian bullseye/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:502 http://deb.debian.org/debian bullseye/main amd64 python3-gdal amd64 3.2.2+dfsg-2+deb11u2 [888 kB] Get:503 http://deb.debian.org/debian bullseye/main amd64 python3-webencodings all 0.5.1-2 [11.0 kB] Get:504 http://deb.debian.org/debian bullseye/main amd64 python3-html5lib all 1.1-3 [93.0 kB] Get:505 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:506 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:507 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:508 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get:509 http://deb.debian.org/debian bullseye/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get:510 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:511 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:512 http://deb.debian.org/debian bullseye/main amd64 python3-llvmlite amd64 0.35.0-3 [120 kB] Get:513 http://deb.debian.org/debian bullseye/main amd64 python3-lxml amd64 4.6.3+dfsg-0.1+deb11u1 [1093 kB] Get:514 http://deb.debian.org/debian bullseye/main amd64 python3-nose all 1.3.7-7 [133 kB] Get:515 http://deb.debian.org/debian bullseye/main amd64 python3-numba amd64 0.52.0-4 [1515 kB] Get:516 http://deb.debian.org/debian bullseye/main amd64 python3-numexpr amd64 2.7.2-2 [144 kB] Get:517 http://deb.debian.org/debian bullseye/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:518 http://deb.debian.org/debian bullseye/main amd64 python3-openpyxl all 3.0.3-1 [159 kB] Get:519 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get:520 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:521 http://deb.debian.org/debian bullseye/main amd64 python3-wheel all 0.34.2-1 [24.0 kB] Get:522 http://deb.debian.org/debian bullseye/main amd64 python3-pip all 20.3.4-4+deb11u1 [337 kB] Get:523 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get:524 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get:525 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get:526 http://deb.debian.org/debian bullseye/main amd64 python3-pydot all 1.4.2-1 [32.7 kB] Get:527 http://deb.debian.org/debian bullseye/main amd64 python3-pygraphviz amd64 1.7-2 [79.9 kB] Get:528 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get:529 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get:530 http://deb.debian.org/debian bullseye/main amd64 python3-renderpm amd64 3.5.59-2 [80.0 kB] Get:531 http://deb.debian.org/debian bullseye/main amd64 python3-simplejson amd64 3.17.2-1 [61.7 kB] Get:532 http://deb.debian.org/debian bullseye/main amd64 python3-tables-lib amd64 3.6.1-3 [394 kB] Get:533 http://deb.debian.org/debian bullseye/main amd64 python3-tables all 3.6.1-3 [342 kB] Get:534 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get:535 http://deb.debian.org/debian bullseye/main amd64 python3-xlwt all 1.3.0-3 [86.1 kB] Get:536 http://deb.debian.org/debian bullseye/main amd64 xauth amd64 1:1.1-1 [40.5 kB] Get:537 http://deb.debian.org/debian bullseye/main amd64 r-base-dev all 4.0.4-1 [4484 B] Get:538 http://deb.debian.org/debian bullseye/main amd64 r-cran-boot all 1.3-27-1 [619 kB] Get:539 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get:540 http://deb.debian.org/debian bullseye/main amd64 r-cran-class amd64 7.3-18-1 [87.5 kB] Get:541 http://deb.debian.org/debian bullseye/main amd64 r-cran-cluster amd64 2.1.1-1 [553 kB] Get:542 http://deb.debian.org/debian bullseye/main amd64 r-cran-codetools all 0.2-18-1 [91.8 kB] Get:543 http://deb.debian.org/debian bullseye/main amd64 r-cran-foreign amd64 0.8.81-1 [253 kB] Get:544 http://deb.debian.org/debian bullseye/main amd64 r-cran-kernsmooth amd64 2.23-18-1 [91.1 kB] Get:545 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:546 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:547 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get:548 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get:549 http://deb.debian.org/debian bullseye/main amd64 r-cran-nnet amd64 7.3-15-1 [111 kB] Get:550 http://deb.debian.org/debian bullseye/main amd64 r-cran-survival amd64 3.2-7-1 [7631 kB] Get:551 http://deb.debian.org/debian bullseye/main amd64 r-cran-rpart amd64 4.1-15-2+b1 [702 kB] Get:552 http://deb.debian.org/debian bullseye/main amd64 r-cran-runit all 0.4.32-3 [294 kB] Get:553 http://deb.debian.org/debian bullseye/main amd64 r-cran-spatial amd64 7.3-13-1 [128 kB] Get:554 http://deb.debian.org/debian bullseye/main amd64 r-doc-html all 4.0.4-1 [573 kB] Get:555 http://deb.debian.org/debian bullseye/main amd64 r-recommended all 4.0.4-1 [2576 B] Get:556 http://deb.debian.org/debian bullseye/main amd64 termit amd64 3.1-1 [52.6 kB] Get:557 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:558 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:559 http://deb.debian.org/debian bullseye/main amd64 x11-utils amd64 7.7+5 [202 kB] Get:560 http://deb.debian.org/debian bullseye/main amd64 x11-xserver-utils amd64 7.7+8 [168 kB] Get:561 http://deb.debian.org/debian bullseye/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 482 MB in 11s (43.9 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.13.6-10_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.6-10) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../1-libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Selecting previously unselected package libargon2-1:amd64. Preparing to unpack .../2-libargon2-1_0~20171227-0.2_amd64.deb ... 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Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up dmsetup (2:1.02.175-2.1) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7531 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_247.3-7+deb11u4_amd64.deb ... Unpacking systemd-sysv (247.3-7+deb11u4) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10899 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../002-libncurses6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package bzip2. Preparing to unpack .../006-bzip2_1.0.8-4_amd64.deb ... Unpacking bzip2 (1.0.8-4) ... Selecting previously unselected package openssl. Preparing to unpack .../007-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../008-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... 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Unpacking manpages (5.10-1) ... Selecting previously unselected package systemd-timesyncd. Preparing to unpack .../015-systemd-timesyncd_247.3-7+deb11u4_amd64.deb ... Unpacking systemd-timesyncd (247.3-7+deb11u4) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package xz-utils. Preparing to unpack .../017-xz-utils_5.2.5-2.1~deb11u1_amd64.deb ... Unpacking xz-utils (5.2.5-2.1~deb11u1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../018-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../019-libgdk-pixbuf2.0-common_2.42.2+dfsg-1+deb11u1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Selecting previously unselected package libglib2.0-0:amd64. 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Setting up libgif7:amd64 (5.1.9-2) ... Setting up libatk1.0-data (2.36.0-2) ... Setting up liburiparser1:amd64 (0.9.4+dfsg-1+deb11u1) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libfreexl1:amd64 (1.0.6-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up python-biopython-doc (1.78+dfsg-4) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libgeos-3.9.0:amd64 (3.9.0-1) ... Setting up libfyba0:amd64 (4.1.1-7) ... Setting up liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Setting up libkmlbase1:amd64 (1.3.0-9) ... Setting up libblosc1 (1.20.1+ds1-2) ... Setting up fonts-liberation (1:1.07.4-11) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpam-systemd:amd64 (247.3-7+deb11u4) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libdav1d4:amd64 (0.7.1-3) ... Setting up libopenjp2-7:amd64 (2.4.0-3) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up netbase (6.3) ... Setting up libjson-glib-1.0-common (1.6.2-1) ... Setting up libcdt5:amd64 (2.42.2-5) ... Setting up libatk1.0-0:amd64 (2.36.0-2) ... Setting up libcgraph6:amd64 (2.42.2-5) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libwayland-egl1:amd64 (1.18.0-2~exp1.1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up glib-networking-common (2.66.0-2) ... Setting up libbinutils:amd64 (2.35.2-2) ... Setting up libisl23:amd64 (0.23-1) ... Setting up libde265-0:amd64 (1.0.11-0+deb11u3) ... Setting up libc-dev-bin (2.31-13+deb11u8) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up publicsuffix (20220811.1734-0+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up python-tables-data (3.6.1-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (10.2.1-6) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up liblsan0:amd64 (10.2.1-6) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up cpp-10 (10.2.1-6) ... Setting up libblas-dev:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.4-1) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libxkbcommon0:amd64 (1.0.3-2) ... Setting up libkmldom1:amd64 (1.3.0-9) ... Setting up libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Setting up libctf0:amd64 (2.35.2-2) ... Setting up pinentry-curses (1.1.0-4) ... Setting up glib-networking-services (2.66.0-2) ... Setting up libgts-bin (0.7.6+darcs121130-4+b1) ... Setting up libz3-dev:amd64 (4.8.10-1) ... Setting up manpages-dev (5.10-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libkmlengine1:amd64 (1.3.0-9) ... Setting up libpng-tools (1.6.37-3) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libarpack2:amd64 (3.8.0-1) ... Setting up libxcb-shape0:amd64 (1.14-3) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libx265-192:amd64 (3.4-2) ... Setting up libsuperlu5:amd64 (5.2.2+dfsg1-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libjson-glib-1.0-0:amd64 (1.6.2-1) ... Setting up libdap27:amd64 (3.20.7-6) ... Setting up libcfitsio9:amd64 (3.490-3) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up dbus-user-session (1.12.28-0+deb11u1) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up shared-mime-info (2.0-1) ... Setting up python-odf-doc (1.4.1-1) ... Setting up liblapack-dev:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgeos-c1v5:amd64 (3.9.0-1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libodbc1:amd64 (2.3.6-0.1+b1) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up libgvpr2:amd64 (2.42.2-5) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up librttopo1:amd64 (1.1.0-2) ... Setting up libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ... Setting up libxcb-randr0:amd64 (1.14-3) ... Setting up cpp (4:10.2.1-1) ... Setting up procps (2:3.3.17-5) ... Setting up libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Setting up libdapclient6v5:amd64 (3.20.7-6) ... Setting up gpgconf (2.2.27-2+deb11u2) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libc6-dev:amd64 (2.31-13+deb11u8) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libgfortran-10-dev:amd64 (10.2.1-6) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Setting up python-pip-whl (20.3.4-4+deb11u1) ... Setting up libxkbfile1:amd64 (1:1.1.0-1) ... Setting up numba-doc (0.52.0-4) ... Setting up libproj19:amd64 (7.2.1-1) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libllvm9:amd64 (1:9.0.1-16.1) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up gpg (2.2.27-2+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up gnupg-utils (2.2.27-2+deb11u2) ... Setting up binutils-x86-64-linux-gnu (2.35.2-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libbz2-dev:amd64 (1.0.8-4) ... Setting up libspatialite7:amd64 (5.0.1-2) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.24-4+deb11u3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libncurses-dev:amd64 (6.2+20201114-2+deb11u2) ... Setting up libarmadillo10 (1:10.1.2+dfsg-6+b1) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up gpg-agent (2.2.27-2+deb11u2) ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket → /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket → /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket → /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket → /usr/lib/systemd/user/gpg-agent.socket. Setting up libxerces-c3.2:amd64 (3.2.3+debian-3+deb11u1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up libpcre2-dev:amd64 (10.36-2+deb11u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpcre3-dev:amd64 (2:8.39-13) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libclang-cpp9 (1:9.0.1-16.1) ... Setting up gpgsm (2.2.27-2+deb11u2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up libheif1:amd64 (1.11.0-1) ... Setting up libpq5:amd64 (13.13-0+deb11u1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up proj-bin (7.2.1-1) ... Setting up dconf-service (0.38.0-2) ... Setting up binutils (2.35.2-2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libatspi2.0-0:amd64 (2.38.0-4+deb11u1) ... Setting up libreadline-dev:amd64 (8.1-1) ... Setting up libgeotiff5:amd64 (1.6.0-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libatk-bridge2.0-0:amd64 (2.38.0-1) ... Setting up dirmngr (2.2.27-2+deb11u2) ... Created symlink /etc/systemd/user/sockets.target.wants/dirmngr.socket → /usr/lib/systemd/user/dirmngr.socket. Setting up perl (5.32.1-4+deb11u3) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up adwaita-icon-theme (3.38.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libdata-dump-perl (1.23-1.1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up libio-html-perl (1.004-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up llvm-9-runtime (1:9.0.1-16.1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up gcc-10 (10.2.1-6) ... Setting up libdpkg-perl (1.20.13) ... Setting up libtimedate-perl (2.3300-2) ... Setting up gpg-wks-server (2.2.27-2+deb11u2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up xauth (1:1.1-1) ... Setting up libgdk-pixbuf2.0-bin (2.42.2+dfsg-1+deb11u1) ... Setting up libnetcdf18:amd64 (1:4.7.4-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up liburi-perl (5.08-1) ... Setting up libx11-protocol-perl (0.56-7.1) ... Setting up python3.9 (3.9.2-1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up libtinfo-dev:amd64 (6.2+20201114-2+deb11u2) ... Setting up mesa-vulkan-drivers:amd64 (20.3.5-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libtie-ixhash-perl (1.23-2.1) ... Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up g++-10 (10.2.1-6) ... Setting up libfile-listing-perl (6.14-1) ... Setting up mime-support (3.66) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up gpg-wks-client (2.2.27-2+deb11u2) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up dconf-gsettings-backend:amd64 (0.38.0-2) ... Setting up libfont-afm-perl (1.20-3) ... Setting up libfile-fcntllock-perl (0.22-3+b7) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libauthen-sasl-perl (2.1600-1.1) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libxcursor1:amd64 (1:1.2.0-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libpng-dev:amd64 (1.6.37-3) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libjpeg-dev:amd64 (1:2.0.6-4) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up libnet-http-perl (6.20-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up python3 (3.9.2-3) ... Setting up libxaw7:amd64 (2:1.0.13-1.1) ... Setting up x11-xserver-utils (7.7+8) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-webencodings (0.5.1-2) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up gcc (4:10.2.1-1) ... Setting up dpkg-dev (1.20.13) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-simplejson (3.17.2-1) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up llvm-9 (1:9.0.1-16.1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.59-2) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-xlwt (1.3.0-3) ... Setting up gfortran-10 (10.2.1-6) ... Setting up pkg-config (0.29.2-1) ... Setting up python3-html5lib (1.1-3) ... Setting up python3-toml (0.10.1-1) ... Setting up libfile-desktopentry-perl (0.22-2) ... Setting up python3-reportlab (3.5.59-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3.9-dev (3.9.2-1) ... Setting up at-spi2-core (2.38.0-4+deb11u1) ... Setting up libpoppler102:amd64 (20.09.0-3.1+deb11u1) ... Setting up python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up gnupg (2.2.27-2+deb11u2) ... Setting up x11-utils (7.7+5) ... Setting up build-essential (12.9) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libcairo-gobject2:amd64 (1.16.0-5) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up libalgorithm-diff-xs-perl (0.04-6+b1) ... Setting up python3-soupsieve (2.2.1-1) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libgtk-3-common (3.24.24-4+deb11u3) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up libc-devtools (2.31-13+deb11u8) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libhtml-form-perl (6.07-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up gsettings-desktop-schemas (3.38.0-2) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-pyfaidx (0.5.9.2-1) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up libfile-mimeinfo-perl (0.30-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-renderpm:amd64 (3.5.59-2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up python3-defusedxml (0.6.0-2) ... Setting up python3-olefile (0.46-3) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up libhtml-format-perl (2.12-1.1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-networkx (2.5+ds-2) ... Setting up python3-nose (1.3.7-7) ... Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up python3-bs4 (4.9.3-1) ... Setting up librsvg2-2:amd64 (2.50.3+dfsg-1+deb11u1) ... Setting up python3-llvmlite (0.35.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up python3-openpyxl (3.0.3-1) ... Setting up python3-dev (3.9.2-3) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up libgvc6 (2.42.2-5) ... Setting up python3-pip (20.3.4-4+deb11u1) ... Setting up librsvg2-common:amd64 (2.50.3+dfsg-1+deb11u1) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up libhttp-daemon-perl (6.12-1+deb11u1) ... Setting up r-cran-cluster (2.1.1-1) ... Setting up r-cran-nnet (7.3-15-1) ... Setting up glib-networking:amd64 (2.66.0-2) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-odf (1.4.1-1) ... Setting up graphviz (2.42.2-5) ... Setting up r-cran-codetools (0.2-18-1) ... Setting up r-cran-boot (1.3-27-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-base-dev (4.0.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up libsoup2.4-1:amd64 (2.72.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up llvm-9-tools (1:9.0.1-16.1) ... Setting up llvm-9-dev (1:9.0.1-16.1) ... Setting up python3-tables-lib (3.6.1-3) ... Setting up python3-pydot (1.4.2-1) ... Setting up r-cran-spatial (7.3-13-1) ... Setting up python3-pomegranate (0.13.5-1) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python-odf-tools (1.4.1-1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up python3-sklearn-lib:amd64 (0.23.2-5) ... Setting up r-cran-foreign (0.8.81-1) ... Setting up python3-numba (0.52.0-4) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up r-cran-runit (0.4.32-3) ... Setting up python3-bottleneck (1.2.1+ds1-2+b4) ... Setting up python3-sklearn (0.23.2-5) ... Setting up python3-numexpr (2.7.2-2) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up python3-pluggy (0.13.0-6) ... Setting up r-cran-kernsmooth (2.23-18-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-bioc-dnacopy (1.64.0-1) ... Setting up python3-pygraphviz (1.7-2) ... Setting up libsoup-gnome2.4-1:amd64 (2.72.0-2) ... Setting up librest-0.7-0:amd64 (0.8.1-1.1) ... Setting up r-cran-class (7.3-18-1) ... Setting up libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Setting up python3-pytest (6.0.2-2) ... Setting up r-cran-survival (3.2-7-1) ... Setting up libgtk-3-bin (3.24.24-4+deb11u3) ... Setting up cnvkit (0.9.8-1) ... Setting up python3-tables (3.6.1-3) ... Setting up libvte-2.91-0:amd64 (0.62.3-1) ... Setting up r-cran-rpart (4.1-15-2+b1) ... Setting up termit (3.1-1) ... update-alternatives: using /usr/bin/termit to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up r-recommended (4.0.4-1) ... Setting up odbcinst1debian2:amd64 (2.3.6-0.1+b1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up odbcinst (2.3.6-0.1+b1) ... Setting up libwww-perl (6.52-1) ... Setting up libgdal28 (3.2.2+dfsg-2+deb11u2) ... Setting up python3-gdal (3.2.2+dfsg-2+deb11u2) ... Setting up libxml-parser-perl:amd64 (2.46-2) ... Setting up libxml-twig-perl (1:3.52-1) ... Setting up libnet-dbus-perl (1.2.0-1+b1) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... 2m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', '-y', 'install', 'cnvkit=0.9.8-1'] 2m18.6s INFO: Running scripts post_install 2m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_install_exceptions'] 2m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_install_exceptions'] 2m18.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 2m20.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 2m25.3s ERROR: WARN: Broken symlinks: /usr/share/man/man3/LIST_REMOVE.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_NEXT.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_HEAD.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_BEFORE.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_AFTER.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INIT.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_HEAD_INITIALIZER.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_HEAD.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_FOREACH.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_FIRST.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_ENTRY.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_EMPTY.3 -> list.3 (manpages-dev) /usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd (python3-biopython) 2m25.4s INFO: /bin converted to /usr/bin by /usr merge 2m25.4s INFO: /lib converted to /usr/lib by /usr merge 2m25.4s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m25.4s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m25.4s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m25.4s INFO: /lib/modprobe.d converted to /usr/lib/modprobe.d by /usr merge 2m25.4s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m25.4s INFO: /lib/systemd/network converted to /usr/lib/systemd/network by /usr merge 2m25.4s INFO: /lib/systemd/ntp-units.d converted to /usr/lib/systemd/ntp-units.d by /usr merge 2m25.4s INFO: /lib/systemd/system-generators converted to /usr/lib/systemd/system-generators by /usr merge 2m25.4s INFO: /lib/systemd/system-preset converted to /usr/lib/systemd/system-preset by /usr merge 2m25.4s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m25.4s INFO: /lib/systemd/system/getty.target.wants converted to /usr/lib/systemd/system/getty.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/graphical.target.wants converted to /usr/lib/systemd/system/graphical.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/initrd-root-device.target.wants converted to /usr/lib/systemd/system/initrd-root-device.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/rc-local.service.d converted to /usr/lib/systemd/system/rc-local.service.d by /usr merge 2m25.4s INFO: /lib/systemd/system/rescue.target.wants converted to /usr/lib/systemd/system/rescue.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/sysinit.target.wants converted to /usr/lib/systemd/system/sysinit.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/systemd-localed.service.d converted to /usr/lib/systemd/system/systemd-localed.service.d by /usr merge 2m25.4s INFO: /lib/systemd/system/timers.target.wants converted to /usr/lib/systemd/system/timers.target.wants by /usr merge 2m25.4s INFO: /lib/systemd/system/user-.slice.d converted to /usr/lib/systemd/system/user-.slice.d by /usr merge 2m25.4s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 2m25.4s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 2m25.4s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 2m25.4s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 2m25.4s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 2m25.4s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 2m25.4s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 2m25.4s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 2m25.4s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 2m25.4s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 2m25.4s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 2m25.4s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 2m25.4s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 2m25.4s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 2m25.4s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 2m25.4s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m25.4s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m25.4s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m25.4s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m25.4s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m25.4s INFO: /sbin converted to /usr/sbin by /usr merge 2m28.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', '-ac', '--ignore-obsolete'] 2m36.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', '-ac', '--ignore-obsolete'] 2m36.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m36.0s DUMP: 0.15.6 2m36.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m36.0s INFO: Running adequate version 0.15.6 now. 2m36.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'cnvkit'] 2m36.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'cnvkit'] 2m36.2s INFO: Running scripts pre_remove 2m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m36.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m36.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m0.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m0.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_exceptions'] 3m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/pre_remove_exceptions'] 3m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m0.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed adwaita-icon-theme adwaita-icon-theme 3.38.0-1 install ok installed apt apt 2.2.4 install ok installed at-spi2-core at-spi2-core 2.38.0-4+deb11u1 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed binfmt-support binfmt-support 2.2.1-1+deb11u1 install ok installed binutils binutils 2.35.2-2 install ok installed binutils-common:amd64 binutils-common 2.35.2-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.35.2-2 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed build-essential build-essential 12.9 install ok installed bzip2 bzip2 1.0.8-4 install ok installed bzip2-doc bzip2-doc 1.0.8-4 install ok installed ca-certificates ca-certificates 20210119 install ok installed cnvkit cnvkit 0.9.8-1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed cpp cpp 4:10.2.1-1 install ok installed cpp-10 cpp-10 10.2.1-6 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed dbus dbus 1.12.28-0+deb11u1 install ok installed dbus-user-session dbus-user-session 1.12.28-0+deb11u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.38.0-2 install ok installed dconf-service dconf-service 0.38.0-2 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dirmngr dirmngr 2.2.27-2+deb11u2 install ok installed dmsetup dmsetup 2:1.02.175-2.1 install ok installed dpkg dpkg 1.20.13 install ok installed dpkg-dev dpkg-dev 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed fakeroot fakeroot 1.25.3-1.1 install ok installed file file 1:5.39-3+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-11 install ok installed fonts-lyx fonts-lyx 2.3.6-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed g++ g++ 4:10.2.1-1 install ok installed g++-10 g++-10 10.2.1-6 install ok installed gcc gcc 4:10.2.1-1 install ok installed gcc-10 gcc-10 10.2.1-6 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gdal-data gdal-data 3.2.2+dfsg-2+deb11u2 install ok installed gfortran gfortran 4:10.2.1-1 install ok installed gfortran-10 gfortran-10 10.2.1-6 install ok installed glib-networking:amd64 glib-networking 2.66.0-2 install ok installed glib-networking-common glib-networking-common 2.66.0-2 install ok installed glib-networking-services glib-networking-services 2.66.0-2 install ok installed gnupg gnupg 2.2.27-2+deb11u2 install ok installed gnupg-l10n gnupg-l10n 2.2.27-2+deb11u2 install ok installed gnupg-utils gnupg-utils 2.2.27-2+deb11u2 install ok installed gpg gpg 2.2.27-2+deb11u2 install ok installed gpg-agent gpg-agent 2.2.27-2+deb11u2 install ok installed gpg-wks-client gpg-wks-client 2.2.27-2+deb11u2 install ok installed gpg-wks-server gpg-wks-server 2.2.27-2+deb11u2 install ok installed gpgconf gpgconf 2.2.27-2+deb11u2 install ok installed gpgsm gpgsm 2.2.27-2+deb11u2 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed graphviz graphviz 2.42.2-5 install ok installed grep grep 3.6-1+deb11u1 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.38.0-2 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.24-4+deb11u3 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23 install ok installed icu-devtools icu-devtools 67.1-7 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libaec0:amd64 libaec0 1.0.4-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-6+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-7 install ok installed libaom0:amd64 libaom0 1.0.0.errata1-3+deb11u1 install ok installed libapparmor1:amd64 libapparmor1 2.13.6-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libargon2-1:amd64 libargon2-1 0~20171227-0.2 install ok installed libarmadillo10 libarmadillo10 1:10.1.2+dfsg-6+b1 install ok installed libarpack2:amd64 libarpack2 3.8.0-1 install ok installed libasan6:amd64 libasan6 10.2.1-6 install ok installed libassuan0:amd64 libassuan0 2.5.3-7.1 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.38.0-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.36.0-2 install ok installed libatk1.0-data libatk1.0-data 2.36.0-2 install ok installed libatomic1:amd64 libatomic1 10.2.1-6 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.38.0-4+deb11u1 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1.1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5+deb11u2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5+deb11u2 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5+deb11u2 install ok installed libbinutils:amd64 libbinutils 2.35.2-2 install ok installed libblas-dev:amd64 libblas-dev 3.9.0-3+deb11u1 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libblosc1 libblosc1 1.20.1+ds1-2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc-dev-bin libc-dev-bin 2.31-13+deb11u8 install ok installed libc-devtools libc-devtools 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libc6-dev:amd64 libc6-dev 2.31-13+deb11u8 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.16.0-5 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcc1-0:amd64 libcc1-0 10.2.1-6 install ok installed libcdt5:amd64 libcdt5 2.42.2-5 install ok installed libcfitsio9:amd64 libcfitsio9 3.490-3 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-5 install ok installed libcharls2:amd64 libcharls2 2.2.0+dfsg-2 install ok installed libclang-cpp9 libclang-cpp9 1:9.0.1-16.1 install ok installed libclone-perl libclone-perl 0.45-1+b1 install ok installed libcolord2:amd64 libcolord2 1.4.5-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.18-4 install ok installed libcrypt1:amd64 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libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.175-2.1 install ok installed libdpkg-perl libdpkg-perl 1.20.13 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.104-1 install ok installed libdrm-common libdrm-common 2.4.104-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.104-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.104-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.104-1 install ok installed libdrm2:amd64 libdrm2 2.4.104-1 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libelf1:amd64 libelf1 0.183-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed libepoxy0:amd64 libepoxy0 1.5.5-1 install ok installed libepsilon1:amd64 libepsilon1 0.9.2+dfsg-5 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfakeroot:amd64 libfakeroot 1.25.3-1.1 install ok installed libffi-dev:amd64 libffi-dev 3.3-6 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfile-basedir-perl libfile-basedir-perl 0.08-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.22-2 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b7 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.30-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfreexl1:amd64 libfreexl1 1.0.6-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libfyba0:amd64 libfyba0 4.1.1-7 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.2.1-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdal28 libgdal28 3.2.2+dfsg-2+deb11u2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-bin 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.2+dfsg-1+deb11u1 install ok installed libgeos-3.9.0:amd64 libgeos-3.9.0 3.9.0-1 install ok installed libgeos-c1v5:amd64 libgeos-c1v5 3.9.0-1 install ok installed libgeotiff5:amd64 libgeotiff5 1.6.0-1 install ok installed libgfortran-10-dev:amd64 libgfortran-10-dev 10.2.1-6 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libgif7:amd64 libgif7 5.1.9-2 install ok installed libgl1:amd64 libgl1 1.3.2-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 20.3.5-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 20.3.5-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u1 install ok installed libglib2.0-data libglib2.0-data 2.66.8-1+deb11u1 install ok installed libglvnd0:amd64 libglvnd0 1.3.2-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 20.3.5-1 install ok installed libglx0:amd64 libglx0 1.3.2-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-8 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.24.24-4+deb11u3 install ok installed libgtk-3-bin libgtk-3-bin 3.24.24-4+deb11u3 install ok installed libgtk-3-common libgtk-3-common 3.24.24-4+deb11u3 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4+b1 install ok installed libgvc6 libgvc6 2.42.2-5 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.15-3 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-4+deb11u1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.6+repack-4+deb11u1 install ok installed libheif1:amd64 libheif1 1.11.0-1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhtml-form-perl libhtml-form-perl 6.07-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1.1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.75-1+b1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.12-1+deb11u1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.28-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu-dev:amd64 libicu-dev 67.1-7 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.069-1 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libip4tc2:amd64 libip4tc2 1.8.7-1 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-1 install ok installed libisl23:amd64 libisl23 0.23-1 install ok installed libitm1:amd64 libitm1 10.2.1-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.0.6-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.0.6-4 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-8+deb11u2 install ok installed libjs-sphinxdoc libjs-sphinxdoc 3.4.3-2 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-3 install ok installed libjson-c5:amd64 libjson-c5 0.15-2+deb11u1 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.6.2-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.6.2-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-9 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-9 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-9 install ok installed libkmod2:amd64 libkmod2 28-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed libksba8:amd64 libksba8 1.5.0-3+deb11u2 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.2-5 install ok installed liblapack-dev:amd64 liblapack-dev 3.9.0-3+deb11u1 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-9 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-common libldap-common 2.4.57+dfsg-3+deb11u1 install ok installed libllvm11:amd64 libllvm11 1:11.0.1-2 install ok installed libllvm9:amd64 libllvm9 1:9.0.1-16.1 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-4+b1 install ok installed liblsan0:amd64 liblsan0 10.2.1-6 install ok installed libltdl7:amd64 libltdl7 2.4.6-15 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.3-1.1+deb11u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.5-2.1~deb11u1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-2 install ok installed libmagic-mgc libmagic-mgc 1:5.39-3+deb11u1 install ok installed libmagic1:amd64 libmagic1 1:5.39-3+deb11u1 install ok installed libmailtools-perl libmailtools-perl 2.21-1 install ok installed libmariadb3:amd64 libmariadb3 1:10.5.23-0+deb11u1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libminizip1:amd64 libminizip1 1.1-8+deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libmpc3:amd64 libmpc3 1.2.0-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libncurses-dev:amd64 libncurses-dev 6.2+20201114-2+deb11u2 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.2.0-1+b1 install ok installed libnet-http-perl libnet-http-perl 6.20-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-3+b1 install ok installed libnetcdf18:amd64 libnetcdf18 1:4.7.4-1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnpth0:amd64 libnpth0 1.6-3 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.29-1 install ok installed libnss-systemd:amd64 libnss-systemd 247.3-7+deb11u4 install ok installed libnss3:amd64 libnss3 2:3.61-1+deb11u3 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1+b1 install ok installed libogdi4.1 libogdi4.1 4.1.0+ds-5 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.4.0-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam-systemd:amd64 libpam-systemd 247.3-7+deb11u4 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-13 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.36-2+deb11u1 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.36-2+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre2-dev:amd64 libpcre2-dev 10.36-2+deb11u1 install ok installed libpcre2-posix2:amd64 libpcre2-posix2 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-13 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-13 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpfm4:amd64 libpfm4 4.11.1+git32-gd0b85fb-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libpng-dev:amd64 libpng-dev 1.6.37-3 install ok installed libpng-tools libpng-tools 1.6.37-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpoppler102:amd64 libpoppler102 20.09.0-3.1+deb11u1 install ok installed libpq5:amd64 libpq5 13.13-0+deb11u1 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libproj19:amd64 libproj19 7.2.1-1 install ok installed libproxy1v5:amd64 libproxy1v5 0.4.17-1 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-dev:amd64 libpython3-dev 3.9.2-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9:amd64 libpython3.9 3.9.2-1 install ok installed libpython3.9-dev:amd64 libpython3.9-dev 3.9.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull8.0:amd64 libqhull8.0 2020.2-3 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed libreadline-dev:amd64 libreadline-dev 8.1-1 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.8.1-1.1 install ok installed librsvg2-2:amd64 librsvg2-2 2.50.3+dfsg-1+deb11u1 install ok installed librsvg2-common:amd64 librsvg2-common 2.50.3+dfsg-1+deb11u1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed librttopo1:amd64 librttopo1 1.1.0-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-7 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.8-1 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.72.0-2 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.72.0-2 install ok installed libspatialite7:amd64 libspatialite7 5.0.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.2.1-6 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.2+dfsg1-2 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.11+dfsg-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-7+b1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2.1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.2+20201114-2+deb11u2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtk8.6:amd64 libtk8.6 8.6.11-2 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 10.2.1-6 install ok installed libubsan1:amd64 libubsan1 10.2.1-6 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed liburi-perl liburi-perl 5.08-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.4+dfsg-1+deb11u1 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libvte-2.91-0:amd64 libvte-2.91-0 0.62.3-1 install ok installed libvte-2.91-common libvte-2.91-common 0.62.3-1 install ok installed libvulkan1:amd64 libvulkan1 1.2.162.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.18.0-2~exp1.1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.18.0-2~exp1.1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.18.0-2~exp1.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2.1+deb11u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2.1+deb11u2 install ok installed libwww-perl libwww-perl 6.52-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7.1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.7.2-1+deb11u2 install ok installed libx265-192:amd64 libx265-192 3.4-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1.1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.14-3 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.14-3 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.14-3 install ok installed libxcb-present0:amd64 libxcb-present0 1.14-3 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.14-3 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.14-3 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.0-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.5-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.3+debian-3+deb11u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.10-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-2 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.0.3-2 install ok installed libxkbfile1:amd64 libxkbfile1 1:1.1.0-1 install ok installed libxml-parser-perl:amd64 libxml-parser-perl 2.46-2 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.34-4+deb11u1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libz3-4:amd64 libz3-4 4.8.10-1 install ok installed libz3-dev:amd64 libz3-dev 4.8.10-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.10.209-2 install ok installed llvm-9 llvm-9 1:9.0.1-16.1 install ok installed llvm-9-dev llvm-9-dev 1:9.0.1-16.1 install ok installed llvm-9-runtime llvm-9-runtime 1:9.0.1-16.1 install ok installed llvm-9-tools llvm-9-tools 1:9.0.1-16.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed make make 4.3-4.1 install ok installed manpages manpages 5.10-1 install ok installed manpages-dev manpages-dev 5.10-1 install ok installed mariadb-common mariadb-common 1:10.5.23-0+deb11u1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mesa-vulkan-drivers:amd64 mesa-vulkan-drivers 20.3.5-1 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed mysql-common mysql-common 5.8+1.0.7 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed netbase netbase 6.3 install ok installed numba-doc numba-doc 0.52.0-4 install ok installed odbcinst odbcinst 2.3.6-0.1+b1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1+b1 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed patch patch 2.7.6-7 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed pinentry-curses pinentry-curses 1.1.0-4 install ok installed pkg-config pkg-config 0.29.2-1 install ok installed poppler-data poppler-data 0.4.10-1 install ok installed procps procps 2:3.3.17-5 install ok installed proj-bin proj-bin 7.2.1-1 install ok installed proj-data proj-data 7.2.1-1 install ok installed psmisc psmisc 23.4-2 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb11u1 install ok installed python-biopython-doc python-biopython-doc 1.78+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.3.4-1 install ok installed python-odf-doc python-odf-doc 1.4.1-1 install ok installed python-odf-tools python-odf-tools 1.4.1-1 install ok installed python-pip-whl python-pip-whl 20.3.4-4+deb11u1 install ok installed python-tables-data python-tables-data 3.6.1-3 install ok installed python3 python3 3.9.2-3 install ok installed python3-attr python3-attr 20.3.0-1 install ok installed python3-biopython python3-biopython 1.78+dfsg-4 install ok installed python3-bottleneck python3-bottleneck 1.2.1+ds1-2+b4 install ok installed python3-bs4 python3-bs4 4.9.3-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-cycler python3-cycler 0.10.0-3 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-decorator python3-decorator 4.4.2-2 install ok installed python3-defusedxml python3-defusedxml 0.6.0-2 install ok installed python3-dev python3-dev 3.9.2-3 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-gdal python3-gdal 3.2.2+dfsg-2+deb11u2 install ok installed python3-html5lib python3-html5lib 1.1-3 install ok installed python3-importlib-metadata python3-importlib-metadata 1.6.0-2 install ok installed python3-iniconfig python3-iniconfig 1.1.1-1 install ok installed python3-jdcal python3-jdcal 1.0-1.3 install ok installed python3-jinja2 python3-jinja2 2.11.3-1 install ok installed python3-joblib python3-joblib 0.17.0-4+deb11u1 install ok installed python3-kiwisolver python3-kiwisolver 1.3.1-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-llvmlite python3-llvmlite 0.35.0-3 install ok installed python3-lxml:amd64 python3-lxml 4.6.3+dfsg-0.1+deb11u1 install ok installed python3-markupsafe python3-markupsafe 1.1.1-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.3.4-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-more-itertools python3-more-itertools 4.2.0-3 install ok installed python3-networkx python3-networkx 2.5+ds-2 install ok installed python3-nose python3-nose 1.3.7-7 install ok installed python3-numba python3-numba 0.52.0-4 install ok installed python3-numexpr python3-numexpr 2.7.2-2 install ok installed python3-numpy python3-numpy 1:1.19.5-1 install ok installed python3-odf python3-odf 1.4.1-1 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openpyxl python3-openpyxl 3.0.3-1 install ok installed python3-packaging python3-packaging 20.9-2 install ok installed python3-pandas python3-pandas 1.1.5+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.1.5+dfsg-2 install ok installed python3-pil:amd64 python3-pil 8.1.2+dfsg-0.3+deb11u1 install ok installed python3-pip python3-pip 20.3.4-4+deb11u1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-pluggy python3-pluggy 0.13.0-6 install ok installed python3-pomegranate python3-pomegranate 0.13.5-1 install ok installed python3-psutil python3-psutil 5.8.0-1 install ok installed python3-py python3-py 1.10.0-1 install ok installed python3-pydot python3-pydot 1.4.2-1 install ok installed python3-pyfaidx python3-pyfaidx 0.5.9.2-1 install ok installed python3-pygments python3-pygments 2.7.1+dfsg-2.1 install ok installed python3-pygraphviz python3-pygraphviz 1.7-2 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-pysam python3-pysam 0.15.4+ds-3+b2 install ok installed python3-pytest python3-pytest 6.0.2-2 install ok installed python3-renderpm:amd64 python3-renderpm 3.5.59-2 install ok installed python3-reportlab python3-reportlab 3.5.59-2 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.59-2 install ok installed python3-scipy python3-scipy 1.6.0-2 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-simplejson python3-simplejson 3.17.2-1 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-sklearn python3-sklearn 0.23.2-5 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 0.23.2-5 install ok installed python3-soupsieve python3-soupsieve 2.2.1-1 install ok installed python3-tables python3-tables 3.6.1-3 install ok installed python3-tables-lib python3-tables-lib 3.6.1-3 install ok installed python3-threadpoolctl python3-threadpoolctl 2.1.0-1 install ok installed python3-tk:amd64 python3-tk 3.9.2-1 install ok installed python3-toml python3-toml 0.10.1-1 install ok installed python3-tz python3-tz 2021.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-2 install ok installed python3-wheel python3-wheel 0.34.2-1 install ok installed python3-xlwt python3-xlwt 1.3.0-3 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3-zipp python3-zipp 1.0.0-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-dev python3.9-dev 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed r-base-core r-base-core 4.0.4-1 install ok installed r-base-dev r-base-dev 4.0.4-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.36.0-1 install ok installed r-bioc-dnacopy r-bioc-dnacopy 1.64.0-1 install ok installed r-cran-boot r-cran-boot 1.3-27-1 install ok installed r-cran-class r-cran-class 7.3-18-1 install ok installed r-cran-cluster r-cran-cluster 2.1.1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-18-1 install ok installed r-cran-foreign r-cran-foreign 0.8.81-1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-18-1 install ok installed r-cran-lattice r-cran-lattice 0.20-41-1+b1 install ok installed r-cran-mass r-cran-mass 7.3-53.1-1 install ok installed r-cran-matrix r-cran-matrix 1.3-2-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-34-1 install ok installed r-cran-nlme r-cran-nlme 3.1.152-1 install ok installed r-cran-nnet r-cran-nnet 7.3-15-1 install ok installed r-cran-rpart r-cran-rpart 4.1-15-2+b1 install ok installed r-cran-runit r-cran-runit 0.4.32-3 install ok installed r-cran-spatial r-cran-spatial 7.3-13-1 install ok installed r-cran-survival r-cran-survival 3.2-7-1 install ok installed r-doc-html r-doc-html 4.0.4-1 install ok installed r-recommended r-recommended 4.0.4-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.5.1+dfsg-1 install ok installed systemd systemd 247.3-7+deb11u4 install ok installed systemd-sysv systemd-sysv 247.3-7+deb11u4 install ok installed systemd-timesyncd systemd-timesyncd 247.3-7+deb11u4 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed termit termit 3.1-1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed x11-common x11-common 1:7.7+22 install ok installed x11-utils x11-utils 7.7+5 install ok installed x11-xserver-utils x11-xserver-utils 7.7+8 install ok installed xauth xauth 1:1.1-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed xkb-data xkb-data 2.29-2 install ok installed xz-utils xz-utils 5.2.5-2.1~deb11u1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-2+deb11u2 3m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'remove', 'adwaita-icon-theme', 'at-spi2-core', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-10', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dirmngr', 'dmsetup', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'icu-devtools', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libassuan0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclang-cpp9', 'libclone-perl', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-10-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libubsan1:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'numba-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-gdal', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-nose', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-pomegranate', 'python3-psutil', 'python3-py', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-runit', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'sensible-utils', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'termit', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xkb-data', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'cnvkit'] 3m18.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adwaita-icon-theme at-spi2-core binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates cnvkit cpp cpp-10 dbus dbus-user-session dconf-gsettings-backend dconf-service dirmngr dmsetup dpkg-dev fakeroot file fontconfig fontconfig-config fonts-font-awesome fonts-lato fonts-liberation fonts-lyx fonts-urw-base35 g++ g++-10 gcc gcc-10 gdal-data gfortran gfortran-10 glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme icu-devtools javascript-common libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom0 libapparmor1 libargon2-1 libarmadillo10 libarpack2 libasan6 libassuan0 libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbinutils libblas-dev libblas3 libblosc1 libbrotli1 libbsd0 libbz2-dev libc-dev-bin libc-devtools libc6-dev libcairo-gobject2 libcairo2 libcap2 libcc1-0 libcdt5 libcfitsio9 libcgraph6 libcharls2 libclang-cpp9 libclone-perl libcolord2 libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdap27 libdapclient6v5 libdata-dump-perl libdatrie1 libdav1d4 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libepoxy0 libepsilon1 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfont-afm-perl libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0 libgcc-10-dev libgd3 libgdal28 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgeos-3.9.0 libgeos-c1v5 libgeotiff5 libgfortran-10-dev libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgtk-3-0 libgtk-3-bin libgtk-3-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu67 libimagequant0 libio-html-perl libio-socket-ssl-perl libio-stringy-perl libip4tc2 libipc-system-simple-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libkmlbase1 libkmldom1 libkmlengine1 libkmod2 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm11 libllvm9 liblmdb0 liblocale-gettext-perl liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libminizip1 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf18 libnghttp2-14 libnpth0 libnsl-dev libnspr4 libnss-systemd libnss3 libnuma1 libodbc1 libogdi4.1 libopenjp2-7 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl5.32 libpfm4 libpipeline1 libpixman-1-0 libpng-dev libpng-tools libpng16-16 libpoppler102 libpq5 libprocps8 libproj19 libproxy1v5 libpsl5 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull8.0 libquadmath0 libreadline-dev libreadline8 librest-0.7-0 librsvg2-2 librsvg2-common librtmp1 librttopo1 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsm6 libsnappy1v5 libsoup-gnome2.4-1 libsoup2.4-1 libspatialite7 libsqlite3-0 libssh2-1 libstdc++-10-dev libsuperlu5 libsz2 libtbb2 libtcl8.6 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtinfo-dev libtirpc-dev libtk8.6 libtry-tiny-perl libtsan0 libubsan1 liburi-perl liburiparser1 libvte-2.91-0 libvte-2.91-common libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-192 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxkbfile1 libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-9 llvm-9-dev llvm-9-runtime llvm-9-tools mailcap make manpages manpages-dev mariadb-common media-types mesa-vulkan-drivers mime-support mysql-common ncbi-blast+ ncbi-data netbase numba-doc odbcinst odbcinst1debian2 openssl patch perl perl-modules-5.32 perl-openssl-defaults pinentry-curses pkg-config poppler-data procps proj-bin proj-data psmisc publicsuffix python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-pip-whl python-tables-data python3 python3-attr python3-biopython python3-bottleneck python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-gdal python3-html5lib python3-importlib-metadata python3-iniconfig python3-jdcal python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-networkx python3-nose python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pkg-resources python3-pluggy python3-pomegranate python3-psutil python3-py python3-pydot python3-pyfaidx python3-pygments python3-pygraphviz python3-pyparsing python3-pysam python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-simplejson python3-six python3-sklearn python3-sklearn-lib python3-soupsieve python3-tables python3-tables-lib python3-threadpoolctl python3-tk python3-toml python3-tz python3-webencodings python3-wheel python3-xlwt python3-yaml python3-zipp python3.9 python3.9-dev python3.9-minimal r-base-core r-base-dev r-bioc-biocgenerics r-bioc-dnacopy r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-runit r-cran-spatial r-cran-survival r-doc-html r-recommended readline-common sensible-utils shared-mime-info sphinx-rtd-theme-common systemd systemd-sysv systemd-timesyncd termit tk8.6-blt2.5 ttf-bitstream-vera ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xkb-data xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 561 to remove and 0 not upgraded. After this operation, 1899 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49878 files and directories currently installed.) Removing termit (3.1-1) ... Removing libvte-2.91-0:amd64 (0.62.3-1) ... Removing libgtk-3-bin (3.24.24-4+deb11u3) ... Removing libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Removing adwaita-icon-theme (3.38.0-1) ... Removing at-spi2-core (2.38.0-4+deb11u1) ... Removing llvm-9-dev (1:9.0.1-16.1) ... Removing python3-numba (0.52.0-4) ... Removing python3-llvmlite (0.35.0-3) ... Removing llvm-9 (1:9.0.1-16.1) ... Removing llvm-9-runtime (1:9.0.1-16.1) ... Removing binfmt-support (2.2.1-1+deb11u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing r-base-dev (4.0.4-1) ... Removing build-essential (12.9) ... Removing g++ (4:10.2.1-1) ... Removing gfortran (4:10.2.1-1) ... Removing gcc (4:10.2.1-1) ... Removing dpkg-dev (1.20.13) ... Removing python3-tk:amd64 (3.9.2-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing bzip2 (1.0.8-4) ... Removing bzip2-doc (1.0.8-4) ... Removing r-recommended (4.0.4-1) ... Removing r-cran-rpart (4.1-15-2+b1) ... Removing r-cran-survival (3.2-7-1) ... Removing r-cran-mgcv (1.8-34-1) ... Removing r-cran-matrix (1.3-2-1) ... Removing r-cran-spatial (7.3-13-1) ... Removing r-cran-runit (0.4.32-3) ... Removing python3-pip (20.3.4-4+deb11u1) ... Removing cnvkit (0.9.8-1) ... Removing x11-xserver-utils (7.7+8) ... Removing cpp (4:10.2.1-1) ... Removing libgtk-3-common (3.24.24-4+deb11u3) ... Removing librest-0.7-0:amd64 (0.8.1-1.1) ... Removing libsoup-gnome2.4-1:amd64 (2.72.0-2) ... Removing libsoup2.4-1:amd64 (2.72.0-2) ... Removing glib-networking:amd64 (2.66.0-2) ... Removing gsettings-desktop-schemas (3.38.0-2) ... Removing dconf-gsettings-backend:amd64 (0.38.0-2) ... Removing dconf-service (0.38.0-2) ... Removing dbus-user-session (1.12.28-0+deb11u1) ... Removing libpam-systemd:amd64 (247.3-7+deb11u4) ... Removing dbus (1.12.28-0+deb11u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing gnupg (2.2.27-2+deb11u2) ... Removing gpg-wks-client (2.2.27-2+deb11u2) ... Removing dirmngr (2.2.27-2+deb11u2) ... Removing systemd-timesyncd (247.3-7+deb11u4) ... Removing systemd-sysv (247.3-7+deb11u4) ... Removing fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing file (1:5.39-3+deb11u1) ... Removing librsvg2-common:amd64 (2.50.3+dfsg-1+deb11u1) ... Removing librsvg2-2:amd64 (2.50.3+dfsg-1+deb11u1) ... Removing python3-pygraphviz (1.7-2) ... Removing x11-utils (7.7+5) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing python3-gdal (3.2.2+dfsg-2+deb11u2) ... Removing libgdal28 (3.2.2+dfsg-2+deb11u2) ... Removing libpoppler102:amd64 (20.09.0-3.1+deb11u1) ... Removing numba-doc (0.52.0-4) ... Removing sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.0-2.1) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing fonts-liberation (1:1.07.4-11) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing python3-matplotlib (3.3.4-1) ... Removing python-matplotlib-data (3.3.4-1) ... Removing fonts-lyx (2.3.6-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing python3-renderpm:amd64 (3.5.59-2) ... Removing fonts-urw-base35 (20200910-1) ... Removing g++-10 (10.2.1-6) ... Removing gdal-data (3.2.2+dfsg-2+deb11u2) ... Removing gfortran-10 (10.2.1-6) ... Removing glib-networking-services (2.66.0-2) ... Removing glib-networking-common (2.66.0-2) ... Removing gnupg-l10n (2.2.27-2+deb11u2) ... Removing gnupg-utils (2.2.27-2+deb11u2) ... Removing gpg-wks-server (2.2.27-2+deb11u2) ... 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Removing libatk-bridge2.0-0:amd64 (2.38.0-1) ... Removing libatk1.0-0:amd64 (2.36.0-2) ... Removing libatk1.0-data (2.36.0-2) ... Removing libatspi2.0-0:amd64 (2.38.0-4+deb11u1) ... Removing libauthen-sasl-perl (2.1600-1.1) ... Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Removing libavahi-client3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common-data:amd64 (0.8-5+deb11u2) ... Removing liblapack-dev:amd64 (3.9.0-3+deb11u1) ... Removing libblas-dev:amd64 (3.9.0-3+deb11u1) ... Removing libsuperlu5:amd64 (5.2.2+dfsg1-2) ... Removing python3-sklearn (0.23.2-5) ... Removing python3-pomegranate (0.13.5-1) ... Removing python3-scipy (1.6.0-2) ... Removing python3-sklearn-lib:amd64 (0.23.2-5) ... Removing python3-biopython (1.78+dfsg-4) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Removing libblosc1 (1.20.1+ds1-2) ... Removing python3-reportlab (3.5.59-2) ... Removing python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Removing mesa-vulkan-drivers:amd64 (20.3.5-1) ... Removing libbz2-dev:amd64 (1.0.8-4) ... Removing python3-dev (3.9.2-3) ... Removing python3.9-dev (3.9.2-1) ... Removing libpng-dev:amd64 (1.6.37-3) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Removing libreadline-dev:amd64 (8.1-1) ... Removing libtinfo-dev:amd64 (6.2+20201114-2+deb11u2) ... Removing libncurses-dev:amd64 (6.2+20201114-2+deb11u2) ... Removing libpcre3-dev:amd64 (2:8.39-13) ... Removing libjpeg-dev:amd64 (1:2.0.6-4) ... Removing libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Removing libc-devtools (2.31-13+deb11u8) ... Removing libcairo-gobject2:amd64 (1.16.0-5) ... Removing libcfitsio9:amd64 (3.490-3) ... Removing libcharls2:amd64 (2.2.0+dfsg-2) ... Removing libclang-cpp9 (1:9.0.1-16.1) ... Removing libclone-perl (0.45-1+b1) ... Removing libcolord2:amd64 (1.4.5-3) ... Removing libxerces-c3.2:amd64 (3.2.3+debian-3+deb11u1) ... Removing libspatialite7:amd64 (5.0.1-2) ... Removing libdapclient6v5:amd64 (3.20.7-6) ... Removing libdap27:amd64 (3.20.7-6) ... Removing libdata-dump-perl (1.23-1.1) ... Removing libdav1d4:amd64 (0.7.1-3) ... Removing libnet-dbus-perl (1.2.0-1+b1) ... Removing libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Removing libdconf1:amd64 (0.38.0-2) ... Removing libde265-0:amd64 (1.0.11-0+deb11u3) ... Removing libgeotiff5:amd64 (1.6.0-1) ... Removing python3-pysam (0.15.4+ds-3+b2) ... Removing libhts3:amd64 (1.11-4) ... Removing pkg-config (0.29.2-1) ... Removing libdpkg-perl (1.20.13) ... Removing libgl1:amd64 (1.3.2-1) ... Removing libglx0:amd64 (1.3.2-1) ... Removing libglx-mesa0:amd64 (20.3.5-1) ... Removing libgl1-mesa-dri:amd64 (20.3.5-1) ... Removing libdrm-amdgpu1:amd64 (2.4.104-1) ... Removing libdrm-intel1:amd64 (2.4.104-1) ... Removing libdrm-nouveau2:amd64 (2.4.104-1) ... Removing libdrm-radeon1:amd64 (2.4.104-1) ... Removing libllvm9:amd64 (1:9.0.1-16.1) ... Removing libllvm11:amd64 (1:11.0.1-2) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing libelf1:amd64 (0.183-1) ... Removing libxml-twig-perl (1:3.52-1) ... Removing libxml-parser-perl:amd64 (2.46-2) ... Removing libepoxy0:amd64 (1.5.5-1) ... Removing libepsilon1:amd64 (0.9.2+dfsg-5) ... Removing libpython3-dev:amd64 (3.9.2-3) ... Removing libpython3.9-dev:amd64 (3.9.2-1) ... Removing libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Removing python3-simplejson (3.17.2-1) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-distutils (3.9.2-1) ... Removing libfakeroot:amd64 (1.25.3-1.1) ... Removing libffi-dev:amd64 (3.3-6) ... Removing libfile-mimeinfo-perl (0.30-1) ... Removing libfile-desktopentry-perl (0.22-2) ... Removing libfile-basedir-perl (0.08-1) ... Removing libfile-fcntllock-perl (0.22-3+b7) ... Removing libhtml-format-perl (2.12-1.1) ... Removing libfont-afm-perl (1.20-3) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing libfreexl1:amd64 (1.0.6-1) ... Removing libfyba0:amd64 (4.1.1-7) ... Removing python3-pandas (1.1.5+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing libhttp-daemon-perl (6.12-1+deb11u1) ... Removing libmailtools-perl (2.21-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libx11-protocol-perl (0.56-7.1) ... Removing libgdk-pixbuf2.0-bin (2.42.2+dfsg-1+deb11u1) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Removing libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Removing librttopo1:amd64 (1.1.0-2) ... Removing libgeos-c1v5:amd64 (3.9.0-1) ... Removing libgeos-3.9.0:amd64 (3.9.0-1) ... Removing r-bioc-dnacopy (1.64.0-1) ... Removing libgif7:amd64 (5.1.9-2) ... Removing libglapi-mesa:amd64 (20.3.5-1) ... Removing shared-mime-info (2.0-1) ... Removing libjson-glib-1.0-0:amd64 (1.6.2-1) ... Removing libglib2.0-data (2.66.8-1+deb11u1) ... Removing libglvnd0:amd64 (1.3.2-1) ... Removing libgpm2:amd64 (1.20.7-8) ... Removing libgts-bin (0.7.6+darcs121130-4+b1) ... Removing libhdf4-0-alt (4.2.15-3) ... Removing libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhtml-form-perl (6.07-1) ... Removing python3-openpyxl (3.0.3-1) ... Removing python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Removing libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-system-simple-perl (1.30-1) ... Removing libjs-sphinxdoc (3.4.3-2) ... Removing python-odf-doc (1.4.1-1) ... Removing libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Removing libjs-underscore (1.9.1~dfsg-3) ... Removing libjson-glib-1.0-common (1.6.2-1) ... Removing libkmlengine1:amd64 (1.3.0-9) ... Removing libkmldom1:amd64 (1.3.0-9) ... Removing libkmlbase1:amd64 (1.3.0-9) ... Removing libksba8:amd64 (1.5.0-3+deb11u2) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libpq5:amd64 (13.13-0+deb11u1) ... Removing libldap-common (2.4.57+dfsg-3+deb11u1) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing liblocale-gettext-perl (1.07-4+b1) ... Removing libodbc1:amd64 (2.3.6-0.1+b1) ... Removing liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Removing liblzma-dev:amd64 (5.2.5-2.1~deb11u1) ... Removing liblzo2-2:amd64 (2.10-2) ... Removing libmagic1:amd64 (1:5.39-3+deb11u1) ... Removing libmagic-mgc (1:5.39-3+deb11u1) ... Removing libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libminizip1:amd64 (1.1-8+deb11u1) ... Removing python3-joblib (0.17.0-4+deb11u1) ... Removing procps (2:3.3.17-5) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnpth0:amd64 (1.6-3) ... Removing libnss3:amd64 (2:3.61-1+deb11u3) ... Removing libnspr4:amd64 (2:4.29-1) ... Removing libnss-systemd:amd64 (247.3-7+deb11u4) ... Checking NSS setup... Removing libx265-192:amd64 (3.4-2) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libogdi4.1 (4.1.0+ds-5) ... Removing libopenjp2-7:amd64 (2.4.0-3) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpcre16-3:amd64 (2:8.39-13) ... Removing libpcre2-dev:amd64 (10.36-2+deb11u1) ... Removing libpcre2-16-0:amd64 (10.36-2+deb11u1) ... Removing libpcre2-32-0:amd64 (10.36-2+deb11u1) ... Removing libpcre2-posix2:amd64 (10.36-2+deb11u1) ... Removing libpcre32-3:amd64 (2:8.39-13) ... Removing libpcrecpp0v5:amd64 (2:8.39-13) ... Removing libpfm4:amd64 (4.11.1+git32-gd0b85fb-1) ... Removing libpipeline1:amd64 (1.5.3-1) ... Removing libpng-tools (1.6.37-3) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libproxy1v5:amd64 (0.4.17-1) ... Removing libpython3.9:amd64 (3.9.2-1) ... Removing libqhull8.0:amd64 (2020.2-3) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsensors5:amd64 (1:3.6.0-7) ... Removing libsensors-config (1:3.6.0-7) ... Removing libsnappy1v5:amd64 (1.1.8-1) ... Removing libtbb2:amd64 (2020.3-1) ... Removing libtext-iconv-perl (1.7-7+b1) ... Removing libtie-ixhash-perl (1.23-2.1) ... Removing liburiparser1:amd64 (0.9.4+dfsg-1+deb11u1) ... Removing libvte-2.91-common (0.62.3-1) ... Removing libvulkan1:amd64 (1.2.162.0-1) ... Removing libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ... Removing libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Removing libwayland-egl1:amd64 (1.18.0-2~exp1.1) ... Removing libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Removing xauth (1:1.1-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb-dri2-0:amd64 (1.14-3) ... Removing libxcb-dri3-0:amd64 (1.14-3) ... Removing libxcb-glx0:amd64 (1.14-3) ... Removing libxcb-present0:amd64 (1.14-3) ... Removing libxcb-randr0:amd64 (1.14-3) ... Removing libxcb-shape0:amd64 (1.14-3) ... Removing libxcb-sync1:amd64 (1.14-3) ... Removing libxcb-xfixes0:amd64 (1.14-3) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.0-2) ... Removing libxdamage1:amd64 (1:1.1.5-2) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing libxfixes3:amd64 (1:5.0.3-2) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.10-1) ... Removing libxinerama1:amd64 (2:1.1.4-2) ... Removing libxkbcommon0:amd64 (1.0.3-2) ... Removing libxkbfile1:amd64 (1:1.1.0-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing llvm-9-tools (1:9.0.1-16.1) ... Removing python3-yaml (5.3.1-5) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing libz3-dev:amd64 (4.8.10-1) ... Removing libz3-4:amd64 (4.8.10-1) ... Removing make (4.3-4.1) ... Removing manpages-dev (5.10-1) ... Removing manpages (5.10-1) ... Removing mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mysql-common (5.8+1.0.7) ... Removing ncbi-data (6.1.20170106+dfsg1-9) ... Removing patch (2.7.6-7) ... Removing poppler-data (0.4.10-1) ... Removing proj-bin (7.2.1-1) ... Removing psmisc (23.4-2) ... Removing publicsuffix (20220811.1734-0+deb11u1) ... Removing python-biopython-doc (1.78+dfsg-4) ... Removing python-odf-tools (1.4.1-1) ... Removing python-pip-whl (20.3.4-4+deb11u1) ... Removing python-tables-data (3.6.1-3) ... Removing python3-pytest (6.0.2-2) ... Removing python3-attr (20.3.0-1) ... Removing python3-bottleneck (1.2.1+ds1-2+b4) ... Removing python3-bs4 (4.9.3-1) ... Removing python3-chardet (4.0.0-1) ... Removing python3-cycler (0.10.0-3) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-networkx (2.5+ds-2) ... Removing python3-decorator (4.4.2-2) ... Removing python3-odf (1.4.1-1) ... Removing python3-defusedxml (0.6.0-2) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-html5lib (1.1-3) ... Removing python3-pluggy (0.13.0-6) ... Removing python3-importlib-metadata (1.6.0-2) ... Removing python3-iniconfig (1.1.1-1) ... Removing python3-jdcal (1.0-1.3) ... Removing python3-jinja2 (2.11.3-1) ... Removing python3-kiwisolver (1.3.1-1+b1) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-markupsafe (1.1.1-1+b3) ... Removing python3-zipp (1.0.0-3) ... Removing python3-more-itertools (4.2.0-3) ... Removing python3-nose (1.3.7-7) ... Removing python3-numexpr (2.7.2-2) ... Removing python3-olefile (0.46-3) ... Removing python3-packaging (20.9-2) ... Removing python3-pyfaidx (0.5.9.2-1) ... Removing python3-py (1.10.0-1) ... Removing python3-psutil (5.8.0-1) ... Removing python3-pydot (1.4.2-1) ... Removing python3-pygments (2.7.1+dfsg-2.1) ... Removing python3-pyparsing (2.4.7-1) ... Removing python3-reportlab-accel:amd64 (3.5.59-2) ... Removing python3-six (1.16.0-2) ... Removing python3-soupsieve (2.2.1-1) ... Removing python3-threadpoolctl (2.1.0-1) ... Removing python3-toml (0.10.1-1) ... Removing python3-tz (2021.1-1) ... Removing python3-webencodings (0.5.1-2) ... Removing python3-wheel (0.34.2-1) ... Removing python3-xlwt (1.3.0-3) ... Removing r-bioc-biocgenerics (0.36.0-1) ... Removing r-cran-boot (1.3-27-1) ... Removing r-cran-class (7.3-18-1) ... Removing r-cran-cluster (2.1.1-1) ... Removing r-cran-codetools (0.2-18-1) ... Removing r-cran-foreign (0.8.81-1) ... Removing r-cran-kernsmooth (2.23-18-1) ... Removing r-cran-nlme (3.1.152-1) ... Removing r-cran-lattice (0.20-41-1+b1) ... Removing r-cran-mass (7.3-53.1-1) ... Removing r-cran-nnet (7.3-15-1) ... Removing r-doc-html (4.0.4-1) ... Removing xdg-user-dirs (0.17-2) ... Removing xkb-data (2.29-2) ... Removing xz-utils (5.2.5-2.1~deb11u1) ... Removing gcc-10 (10.2.1-6) ... Removing binutils (2.35.2-2) ... Removing binutils-x86-64-linux-gnu (2.35.2-2) ... Removing libctf0:amd64 (2.35.2-2) ... Removing libbinutils:amd64 (2.35.2-2) ... Removing binutils-common:amd64 (2.35.2-2) ... Removing r-base-core (4.0.4-1) ... Removing cpp-10 (10.2.1-6) ... Removing systemd (247.3-7+deb11u4) ... Removing libcryptsetup12:amd64 (2:2.3.7-1+deb11u1) ... Removing graphviz (2.42.2-5) ... Removing libgvc6 (2.42.2-5) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing libtk8.6:amd64 (8.6.11-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing libann0 (1.1.2+doc-7) ... Removing libapparmor1:amd64 (2.13.6-10) ... Removing libargon2-1:amd64 (0~20171227-0.2) ... Removing libgcc-10-dev:amd64 (10.2.1-6) ... Removing libasan6:amd64 (10.2.1-6) ... Removing libatomic1:amd64 (10.2.1-6) ... Removing python3-numpy (1:1.19.5-1) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Removing libxaw7:amd64 (2:1.0.13-1.1) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libc6-dev:amd64 (2.31-13+deb11u8) ... Removing libc-dev-bin (2.31-13+deb11u8) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libcap2:amd64 (1:2.44-1) ... Removing libcc1-0:amd64 (10.2.1-6) ... Removing libgvpr2:amd64 (2.42.2-5) ... Removing libcgraph6:amd64 (2.42.2-5) ... Removing libcdt5:amd64 (2.42.2-5) ... Removing libcrypt-dev:amd64 (1:4.4.18-4) ... Removing libctf-nobfd0:amd64 (2.35.2-2) ... Removing libproj19:amd64 (7.2.1-1) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libdrm2:amd64 (2.4.104-1) ... Removing libdrm-common (2.4.104-1) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing libgd3:amd64 (2.3.0-2) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Removing libicu67:amd64 (67.1-7) ... Removing libip4tc2:amd64 (1.8.7-1) ... Removing libisl23:amd64 (0.23-1) ... Removing libitm1:amd64 (10.2.1-6) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing libjson-c5:amd64 (0.15-2+deb11u1) ... Removing libkmod2:amd64 (28-1) ... Removing liblab-gamut1:amd64 (2.42.2-5) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing liblsan0:amd64 (10.2.1-6) ... Removing libmpc3:amd64 (1.2.0-1) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpathplan4:amd64 (2.42.2-5) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libtcl8.6:amd64 (8.6.11+dfsg-1) ... Removing libthai-data (0.1.28-3) ... Removing libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Removing libtsan0:amd64 (10.2.1-6) ... Removing libubsan1:amd64 (10.2.1-6) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing linux-libc-dev:amd64 (5.10.209-2) ... Removing proj-data (7.2.1-1) ... Removing python3-pkg-resources (52.0.0-4) ... Removing unzip (6.0-26+deb11u1) ... Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libreadline8:amd64 (8.1-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ttf-bitstream-vera (1.10-8.1) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing python3.9-minimal (3.9.2-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing dmsetup (2:1.02.175-2.1) ... Removing libdevmapper1.02.1:amd64 (2:1.02.175-2.1) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libwww-perl (6.52-1) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.14-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.75-1+b1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libio-socket-ssl-perl (2.069-1) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1+b1) ... Removing odbcinst (2.3.6-0.1+b1) ... Removing libltdl7:amd64 (2.4.6-15) ... Removing libnet-http-perl (6.20-1) ... Removing libnet-ssleay-perl (1.88-3+b1) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing netbase (6.3) ... Removing perl-openssl-defaults:amd64 (5) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.28-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libhttp-date-perl (6.05-1) ... Removing libio-html-perl (1.004-2) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libtimedate-perl (2.3300-2) ... Removing liburi-perl (5.08-1) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 3m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'remove', 'adwaita-icon-theme', 'at-spi2-core', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-10', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dirmngr', 'dmsetup', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'icu-devtools', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libassuan0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclang-cpp9', 'libclone-perl', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-10-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libubsan1:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'numba-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-gdal', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-nose', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-pomegranate', 'python3-psutil', 'python3-py', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-runit', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'sensible-utils', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'termit', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xkb-data', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'cnvkit'] 3m18.4s INFO: Running scripts post_remove 3m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_remove_exceptions'] 3m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_remove_exceptions'] 3m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--purge', 'adwaita-icon-theme', 'at-spi2-core', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-10', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dirmngr', 'dmsetup', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'icu-devtools', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libassuan0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclang-cpp9', 'libclone-perl', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-10-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libubsan1:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'netbase', 'numba-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-gdal', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-nose', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-pomegranate', 'python3-psutil', 'python3-py', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-runit', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'sensible-utils', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'termit', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xkb-data', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 3m20.5s DUMP: (Reading database ... 6837 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (3.38.0-1) ... Purging configuration files for at-spi2-core (2.38.0-4+deb11u1) ... Purging configuration files for binfmt-support (2.2.1-1+deb11u1) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-10 which isn't installed Purging configuration files for dbus (1.12.28-0+deb11u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Purging configuration files for dbus-user-session (1.12.28-0+deb11u1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed Purging configuration files for dirmngr (2.2.27-2+deb11u2) ... dpkg: warning: ignoring request to remove dmsetup which isn't installed Purging configuration files for dpkg-dev (1.20.13) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-4.2) ... 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libgdk-pixbuf2.0-bin which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgeos-3.9.0 which isn't installed dpkg: warning: ignoring request to remove libgeos-c1v5 which isn't installed dpkg: warning: ignoring request to remove libgeotiff5 which isn't installed dpkg: warning: ignoring request to remove libgfortran-10-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (20.3.5-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to 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Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjson-c5 which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-common which isn't installed dpkg: warning: ignoring request to remove libkmlbase1 which isn't installed dpkg: warning: ignoring request to remove libkmldom1 which isn't installed dpkg: warning: ignoring request to remove libkmlengine1 which isn't installed dpkg: warning: ignoring request to remove libkmod2 which isn't installed dpkg: warning: ignoring request to remove libksba8 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblapack-dev which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.57+dfsg-3+deb11u1) ... dpkg: warning: ignoring request to remove libllvm11 which isn't installed dpkg: warning: ignoring request to remove libllvm9 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't 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which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed Purging configuration files for libnss-systemd:amd64 (247.3-7+deb11u4) ... dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libodbc1 which isn't installed dpkg: warning: ignoring request to remove libogdi4.1 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre16-3 which isn't installed dpkg: warning: ignoring request to remove libpcre2-16-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-32-0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-dev which isn't installed dpkg: warning: ignoring request to remove libpcre2-posix2 which isn't installed dpkg: warning: ignoring request to remove libpcre3-dev which isn't installed dpkg: warning: ignoring request to remove libpcre32-3 which isn't installed dpkg: warning: ignoring request to remove libpcrecpp0v5 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpfm4 which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng-dev which isn't installed dpkg: warning: ignoring request to remove libpng-tools which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpoppler102 which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libproj19 which isn't installed dpkg: warning: ignoring request to remove libproxy1v5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.9 which isn't 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which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtinfo-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove liburiparser1 which isn't installed dpkg: warning: ignoring request to remove libvte-2.91-0 which isn't installed Purging configuration files for libvte-2.91-common (0.62.3-1) ... dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-protocol-perl which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libx265-192 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxerces-c3.2 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxkbfile1 which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxv1 which isn't installed dpkg: warning: ignoring request to remove libxxf86dga1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libz3-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove llvm-9 which isn't installed dpkg: warning: ignoring request to remove llvm-9-dev which isn't installed dpkg: warning: ignoring request to remove llvm-9-runtime which isn't installed dpkg: warning: ignoring request to remove llvm-9-tools which isn't installed Purging configuration files for mailcap (3.69) ... dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for mariadb-common (1:10.5.23-0+deb11u1) ... Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mesa-vulkan-drivers which isn't installed dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for mysql-common (5.8+1.0.7) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... Purging configuration files for netbase (6.3) ... dpkg: warning: ignoring request to remove numba-doc which isn't installed Purging configuration files for odbcinst (2.3.6-0.1+b1) ... dpkg: warning: ignoring request to remove odbcinst1debian2 which isn't installed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkg-config (0.29.2-1) ... Purging configuration files for poppler-data (0.4.10-1) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed Purging configuration files for procps (2:3.3.17-5) ... dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed Purging configuration files for psmisc (23.4-2) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.3.4-1) ... dpkg: warning: ignoring request to remove python-odf-doc which isn't installed dpkg: warning: ignoring request to remove python-odf-tools which isn't installed dpkg: warning: ignoring request to remove python-pip-whl which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bottleneck which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-iniconfig which isn't installed dpkg: warning: ignoring request to remove python3-jdcal which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-llvmlite which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-nose which isn't installed dpkg: warning: ignoring request to remove python3-numba which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-odf which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pip which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-pomegranate which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pydot which isn't installed dpkg: warning: ignoring request to remove python3-pyfaidx which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pygraphviz which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-sklearn which isn't installed dpkg: warning: ignoring request to remove python3-sklearn-lib which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-threadpoolctl which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-xlwt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed dpkg: warning: ignoring request to remove python3.9-dev which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for r-base-core (4.0.4-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-dnacopy which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-runit which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for systemd (247.3-7+deb11u4) ... dpkg: warning: while removing systemd, directory '/usr/lib/systemd' not empty so not removed dpkg: warning: ignoring request to remove systemd-sysv which isn't installed Purging configuration files for systemd-timesyncd (247.3-7+deb11u4) ... Purging configuration files for termit (3.1-1) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... Purging configuration files for x11-common (1:7.7+22) ... Purging configuration files for x11-utils (7.7+5) ... Purging configuration files for x11-xserver-utils (7.7+8) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xkb-data which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--purge', 'adwaita-icon-theme', 'at-spi2-core', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'cpp', 'cpp-10', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'dirmngr', 'dmsetup', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-liberation', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'icu-devtools', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libassuan0:amd64', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclang-cpp9', 'libclone-perl', 'libcolord2:amd64', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnghttp2-14:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenjp2-7:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstdc++-10-dev:amd64', 'libsuperlu5:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libubsan1:amd64', 'liburi-perl', 'liburiparser1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'netbase', 'numba-doc', 'odbcinst', 'odbcinst1debian2:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pinentry-curses', 'pkg-config', 'poppler-data', 'procps', 'proj-bin', 'proj-data', 'psmisc', 'publicsuffix', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-gdal', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-networkx', 'python3-nose', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-pomegranate', 'python3-psutil', 'python3-py', 'python3-pydot', 'python3-pyfaidx', 'python3-pygments', 'python3-pygraphviz', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-biocgenerics', 'r-bioc-dnacopy', 'r-cran-boot', 'r-cran-class', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-foreign', 'r-cran-kernsmooth', 'r-cran-lattice', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-nlme', 'r-cran-nnet', 'r-cran-rpart', 'r-cran-runit', 'r-cran-spatial', 'r-cran-survival', 'r-doc-html', 'r-recommended', 'readline-common', 'sensible-utils', 'shared-mime-info', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 'termit', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xkb-data', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 3m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--purge', 'cnvkit'] 3m20.6s DUMP: dpkg: warning: ignoring request to remove cnvkit which isn't installed 3m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--purge', 'cnvkit'] 3m20.6s INFO: Running scripts post_purge 3m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_purge_exceptions'] 3m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_purge_exceptions'] 3m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--purge', '--pending'] 3m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--purge', '--pending'] 3m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--remove', '--pending'] 3m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg', '--remove', '--pending'] 3m20.6s INFO: Running scripts post_test 3m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_test_exceptions'] 3m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'tmp/scripts/post_test_exceptions'] 3m20.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 3m20.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 3m21.3s DEBUG: No broken symlinks as far as we can find. 3m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-divert', '--list'] 3m21.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 3m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'dpkg-divert', '--list'] 3m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'clean'] 3m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr', 'apt-get', 'clean'] 3m21.5s DEBUG: Recording chroot state 3m22.0s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-font-awesome, fonts-lyx, fonts-urw-base35, fonts-liberation, ttf-bitstream-vera, poppler-data, fonts-lato /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-font-awesome, fonts-urw-base35 /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/opentype/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/urw-base35/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-font-awesome, fonts-lyx, fonts-liberation, ttf-bitstream-vera, fonts-lato /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned /usr/share/fonts/type1/ owned by: fonts-urw-base35 /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/type1/urw-base35/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned 3m22.0s INFO: PASS: Installation and purging test. 3m22.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/shm'] 3m22.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/shm'] 3m22.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/console'] 3m22.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/console'] 3m22.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/ptmx'] 3m22.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/ptmx'] 3m22.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/pts'] 3m22.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/dev/pts'] 3m22.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/proc'] 3m22.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr/proc'] 3m22.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 3m22.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpr3cja2kr'] 3m22.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpr3cja2kr 3m22.5s INFO: PASS: All tests. 3m22.5s INFO: piuparts run ends. ret=0 End: 2024-05-10 06:31:27 GMT