Start: 2024-08-18 07:55:06 GMT Package: gbrowse-calign Source: gbrowse (2.56+dfsg-8) Version: 2.56+dfsg-8+b1 Installed-Size: 81 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.32.0-4), perlapi-5.32.0, libc6 (>= 2.4), gbrowse Description: CAlign helper Homepage: http://gmod.org/wiki/GBrowse Description-md5: 52106883c9df300bab833de801839ea2 Tag: devel::lang:c, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::devel-lib, role::program, role::shared-lib, scope::utility Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse-calign_2.56+dfsg-8+b1_amd64.deb Size: 36868 MD5sum: e8739dac7d77a02e1d3ad8a8df5a1dda SHA256: ebca286f8e372fef156a211dbb94da41e15da3f4cdbe4c7e49220e4d3ee8812f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt gbrowse-calign=2.56+dfsg-8+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt gbrowse-calign=2.56+dfsg-8+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpevcufdy2 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpevcufdy2 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpevcufdy2/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s DUMP: e0568dca630aa17b9cacee75afdb778e - 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'clean'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'clean'] 0m3.5s DEBUG: Recording chroot state 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-divert', '--list'] 0m4.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-divert', '--list'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: apt-cache does not know about any of the requested packages 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_test_root_password'] 0m4.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_test_root_password'] 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 0m5.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 0m6.6s DEBUG: No broken symlinks as far as we can find. 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-cache', 'policy'] 0m7.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.10,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-cache', 'policy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-cache', 'policy', 'gbrowse-calign'] 0m7.5s DUMP: gbrowse-calign: Installed: (none) Candidate: 2.56+dfsg-8+b1 Version table: 2.56+dfsg-8+b1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-cache', 'policy', 'gbrowse-calign'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', '-y', 'install', 'gbrowse-calign=2.56+dfsg-8+b1'] 1m27.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fonts-urw-base35 fsa gawk gbrowse ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign lagan libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasync-interrupt-perl libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-eutilities-perl libbio-featureio-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl liberror-perl libev-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgd-perl libgd-svg-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl liblab-gamut1 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpdec3 libmpfr6 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libstaden-read14 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-11-jdk-headless openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.32 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python3 python3-minimal python3.9 python3.9-minimal rake raxml readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom groff-base gmap fasta3 trnascan-se blends-doc bowtie-examples bzip2-doc clustalx seaview default-dbus-session-bus | dbus-session-bus default-jre emboss-doc emboss-test embassy fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gbrowse-data libfile-nfslock-perl ghostscript-x gsfonts graphviz-doc hmmer-doc libevent-perl libio-async-perl libpoe-perl libasound2-plugins alsa-utils libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n gpm libhtml-element-extended-perl libhwloc-contrib-plugins liblcms2-utils libcrypt-ssleay-perl uuid libscalar-number-perl pciutils pcscd libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libmime-lite-perl libnet-jabber-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl menu-l10n gksu | kde-cli-tools | ktsuss mustang-testdata gnuplot opencl-icd openjdk-11-demo openjdk-11-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl man-browser phylip-doc blast2 poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils binfmt-support readline-doc ri ruby-dev bundler cwltool sqlite3-doc boxshade t-coffee-examples pymol rasmol wise-doc Recommended packages: blast2 The following NEW packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fonts-urw-base35 fsa gawk gbrowse gbrowse-calign ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign lagan libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasync-interrupt-perl libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-eutilities-perl libbio-featureio-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl liberror-perl libev-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgd-perl libgd-svg-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl liblab-gamut1 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpdec3 libmpfr6 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libstaden-read14 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-11-jdk-headless openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.32 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python3 python3-minimal python3.9 python3.9-minimal rake raxml readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip 0 upgraded, 478 newly installed, 0 to remove and 0 not upgraded. Need to get 387 MB of archives. After this operation, 1527 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libapparmor1 amd64 2.13.6-10 [99.3 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 dbus amd64 1.12.28-0+deb11u1 [244 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libapr1 amd64 1.7.0-6+deb11u2 [106 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libaprutil1 amd64 1.6.1-5+deb11u1 [92.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-5+deb11u1 [19.0 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libaprutil1-ldap amd64 1.6.1-5+deb11u1 [17.2 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2+deb11u1 [156 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u12 [347 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libjansson4 amd64 2.13.1-1.1 [39.7 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 liblua5.3-0 amd64 5.3.3-1.1+deb11u1 [123 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 apache2-bin amd64 2.4.59-1~deb11u1 [1448 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 apache2-data all 2.4.59-1~deb11u1 [160 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 apache2-utils amd64 2.4.59-1~deb11u1 [271 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 apache2 amd64 2.4.59-1~deb11u1 [284 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 gawk amd64 1:5.1.0-1 [605 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 poppler-data all 0.4.10-1 [1602 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libfido2-1 amd64 1.6.0-2 [53.3 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 openssh-client amd64 1:8.4p1-5+deb11u3 [932 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 xz-utils amd64 5.2.5-2.1~deb11u1 [220 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 alsa-topology-conf all 1.2.4-1 [12.8 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 alsa-ucm-conf all 1.2.4-2 [28.1 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 bedtools amd64 2.30.0+dfsg-1 [663 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-2 [2607 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:81 http://deb.debian.org/debian bullseye/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libtest-deep-perl all 1.130-1 [49.3 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libtest-differences-perl all 0.67-1 [18.7 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libsub-uplevel-perl all 0.2800-1.1 [16.5 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libtest-most-perl all 0.37-1 [24.9 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 bioperl all 1.7.7-2 [246 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libio-pty-perl amd64 1:1.15-2 [37.0 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libipc-run-perl all 20200505.0-1 [102 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libfile-sort-perl all 1.01-2 [21.2 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-run-perl all 1.7.3-6 [606 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libbio-tools-run-alignment-clustalw-perl all 1.7.4-2 [24.5 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libfile-slurp-tiny-perl all 0.004-1 [7288 B] Get:100 http://deb.debian.org/debian bullseye/main amd64 libtree-dagnode-perl all 1.32-1 [61.7 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:115 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libxml-parser-perl amd64 2.46-2 [206 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libxml-perl all 0.08-3.1 [93.9 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:125 http://deb.debian.org/debian bullseye/main amd64 libxml-dom-perl all 1.46-1 [154 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libxml-dom-xpath-perl all 0.14-3 [9066 B] Get:128 http://deb.debian.org/debian bullseye/main amd64 libbio-featureio-perl all 1.6.905-2 [53.2 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libipc-sharelite-perl amd64 0.17-4+b5 [24.5 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libcgi-pm-perl all 4.51-1 [224 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libxml-twig-perl all 1:3.52-1 [181 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 libbio-db-ncbihelper-perl all 1.7.6-4 [58.1 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 libxml-writer-perl all 0.900-1 [29.9 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libbio-variation-perl all 1.7.5-2 [72.5 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libbio-cluster-perl all 1.7.3-5 [53.2 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libtest-requiresinternet-perl all 0.05-3 [6768 B] Get:140 http://deb.debian.org/debian bullseye/main amd64 libtext-csv-perl all 2.00-1 [105 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libbio-eutilities-perl all 1.77-1 [124 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libbio-tools-run-remoteblast-perl all 1.7.3-3 [17.5 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 fonts-liberation all 1:1.07.4-11 [828 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u4 [1377 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.23+9-1~deb11u1 [38.2 MB] Get:171 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jdk-headless amd64 11.0.23+9-1~deb11u1 [73.6 MB] Get:173 http://deb.debian.org/debian bullseye/main amd64 default-jdk-headless amd64 2:1.11-72 [1100 B] Get:174 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u12 [344 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 hyphy-common all 2.5.28+dfsg-3 [566 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 hyphy-pt amd64 2.5.28+dfsg-3 [1656 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 bioperl-run all 1.7.3-6 [42.2 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 menu amd64 2.1.48 [375 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 blends-common all 0.7.2 [24.7 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 bowtie amd64 1.3.0+dfsg1-1 [1638 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 clustalo amd64 1.2.4-7 [260 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 dialign amd64 2.2.1-11 [139 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 dialign-tx-data all 1.0.2-13 [871 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 dialign-tx amd64 1.0.2-13 [82.2 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 mysql-common all 5.8+1.0.7 [7464 B] Get:201 http://deb.debian.org/debian bullseye/main amd64 mariadb-common all 1:10.5.23-0+deb11u1 [37.2 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 libmariadb3 amd64 1:10.5.23-0+deb11u1 [176 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.15-0+deb11u1 [182 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 emboss-lib amd64 6.6.0+dfsg-9 [2866 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 emboss-data all 6.6.0+dfsg-9 [61.1 MB] Get:206 http://deb.debian.org/debian bullseye/main amd64 emboss amd64 6.6.0+dfsg-9 [1073 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 fonts-noto-mono all 20201225-1 [402 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 mummer amd64 3.23+dfsg-7 [664 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 libgd-perl amd64 2.73-1+b1 [141 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 libdevel-symdump-perl all 2.18-4 [17.5 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 libapache2-mod-perl2 amd64 2.0.11-4 [887 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 libdbi-perl amd64 1.643-3+b1 [780 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 libdbd-pg-perl amd64 3.14.2-1+b1 [215 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 libdbd-sqlite3-perl amd64 1.66-1+b1 [179 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 libbio-db-seqfeature-perl all 1.7.4-1 [169 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 libbio-graphics-perl all 2.40-6 [610 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 libbio-coordinate-perl all 1.7.1-4 [56.7 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 libjson-perl all 4.03000-1 [88.6 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 libhttp-daemon-perl all 6.12-1+deb11u1 [23.4 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 sqlite3 amd64 3.34.1-3 [1201 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 libjs-prototype all 1.7.1-3.1 [39.2 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 libjs-scriptaculous all 1.9.0-2.1 [110 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 libanyevent-perl amd64 7.170-2+b1 [399 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 libanyevent-cachedns-perl all 0.08-2.1 [7292 B] Get:237 http://deb.debian.org/debian bullseye/main amd64 libcommon-sense-perl amd64 3.75-1+b4 [24.6 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 libanyevent-http-perl all 2.25-1 [36.5 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 libstring-approx-perl amd64 3.28-1+b3 [40.3 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 libvm-ec2-perl all 1.28-2 [768 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 gbrowse all 2.56+dfsg-8 [2374 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 gbrowse-calign amd64 2.56+dfsg-8+b1 [36.9 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 libgs9-common all 9.53.3~dfsg-7+deb11u7 [735 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 libidn11 amd64 1.33-3 [116 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 libjbig2dec0 amd64 0.19-2 [67.2 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 libgs9 amd64 9.53.3~dfsg-7+deb11u7 [2244 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 ghostscript amd64 9.53.3~dfsg-7+deb11u7 [98.5 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 libcdt5 amd64 2.42.2-5 [62.2 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 libcgraph6 amd64 2.42.2-5 [85.5 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:261 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 libpathplan4 amd64 2.42.2-5 [64.3 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 libgvc6 amd64 2.42.2-5 [695 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 libgvpr2 amd64 2.42.2-5 [212 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 liblab-gamut1 amd64 2.42.2-5 [221 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 graphviz amd64 2.42.2-5 [632 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:281 http://deb.debian.org/debian bullseye/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:282 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:283 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:284 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get:285 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get:286 http://deb.debian.org/debian bullseye/main amd64 infernal amd64 1.1.4-1 [5523 kB] Get:287 http://deb.debian.org/debian bullseye/main amd64 javascript-common all 11+nmu1 [6260 B] Get:288 http://deb.debian.org/debian bullseye/main amd64 kalign amd64 1:3.3-1+b3 [137 kB] Get:289 http://deb.debian.org/debian bullseye/main amd64 lagan amd64 2.0-6 [179 kB] Get:290 http://deb.debian.org/debian bullseye/main amd64 libace-perl amd64 1.92-10 [284 kB] Get:291 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-xs-perl amd64 0.04-6+b1 [12.0 kB] Get:292 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:293 http://deb.debian.org/debian bullseye/main amd64 libapache2-reload-perl all 0.13-3 [17.2 kB] Get:294 http://deb.debian.org/debian bullseye/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:295 http://deb.debian.org/debian bullseye/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:296 http://deb.debian.org/debian bullseye/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:297 http://deb.debian.org/debian bullseye/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:298 http://deb.debian.org/debian bullseye/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:299 http://deb.debian.org/debian bullseye/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:300 http://deb.debian.org/debian bullseye/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:301 http://deb.debian.org/debian bullseye/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:302 http://deb.debian.org/debian bullseye/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:303 http://deb.debian.org/debian bullseye/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:304 http://deb.debian.org/debian bullseye/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:305 http://deb.debian.org/debian bullseye/main amd64 libtype-tiny-perl all 1.012001-2 [351 kB] Get:306 http://deb.debian.org/debian bullseye/main amd64 libarray-compare-perl all 3.0.8-1 [14.9 kB] Get:307 http://deb.debian.org/debian bullseye/main amd64 libasync-interrupt-perl amd64 1.26-1+b1 [34.8 kB] Get:308 http://deb.debian.org/debian bullseye/main amd64 libauthen-sasl-perl all 2.1600-1.1 [45.4 kB] Get:309 http://deb.debian.org/debian bullseye/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:310 http://deb.debian.org/debian bullseye/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:311 http://deb.debian.org/debian bullseye/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:312 http://deb.debian.org/debian bullseye/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:313 http://deb.debian.org/debian bullseye/main amd64 libberkeleydb-perl amd64 0.64-1+b1 [124 kB] Get:314 http://deb.debian.org/debian bullseye/main amd64 libhtscodecs2 amd64 0.5-3 [50.6 kB] Get:315 http://deb.debian.org/debian bullseye/main amd64 libstaden-read14 amd64 1.14.13-4 [265 kB] Get:316 http://deb.debian.org/debian bullseye/main amd64 libbio-scf-perl amd64 1.03-5+b1 [21.1 kB] Get:317 http://deb.debian.org/debian bullseye/main amd64 libcarp-clan-perl all 6.08-1 [15.6 kB] Get:318 http://deb.debian.org/debian bullseye/main amd64 libbit-vector-perl amd64 7.4-1+b7 [146 kB] Get:319 http://deb.debian.org/debian bullseye/main amd64 libbsd-resource-perl amd64 1.2911-1+b5 [33.9 kB] Get:320 http://deb.debian.org/debian bullseye/main amd64 libfcgi0ldbl amd64 2.4.2-2 [26.1 kB] Get:321 http://deb.debian.org/debian bullseye/main amd64 libfcgi-perl amd64 0.79+ds-2 [27.6 kB] Get:322 http://deb.debian.org/debian bullseye/main amd64 libcgi-fast-perl all 1:2.15-1 [12.1 kB] Get:323 http://deb.debian.org/debian bullseye/main amd64 libclass-inspector-perl all 1.36-1 [19.6 kB] Get:324 http://deb.debian.org/debian bullseye/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:325 http://deb.debian.org/debian bullseye/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:326 http://deb.debian.org/debian bullseye/main amd64 libconvert-binary-c-perl amd64 0.84-1 [269 kB] Get:327 http://deb.debian.org/debian bullseye/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:328 http://deb.debian.org/debian bullseye/main amd64 libcrypt-rc4-perl all 2.02-3 [7704 B] Get:329 http://deb.debian.org/debian bullseye/main amd64 libdata-dump-perl all 1.23-1.1 [27.6 kB] Get:330 http://deb.debian.org/debian bullseye/main amd64 libdate-calc-perl all 6.4-1.1 [191 kB] Get:331 http://deb.debian.org/debian bullseye/main amd64 libdate-calc-xs-perl amd64 6.4-1+b6 [55.0 kB] Get:332 http://deb.debian.org/debian bullseye/main amd64 libdate-manip-perl all 6.83-1 [931 kB] Get:333 http://deb.debian.org/debian bullseye/main amd64 libdbd-mysql-perl amd64 4.050-3+b1 [122 kB] Get:334 http://deb.debian.org/debian bullseye/main amd64 libdigest-perl-md5-perl all 1.9-1.1 [11.2 kB] Get:335 http://deb.debian.org/debian bullseye/main amd64 libev-perl amd64 4.33-1+b1 [263 kB] Get:336 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:337 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:338 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:339 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:340 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:341 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get:342 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:343 http://deb.debian.org/debian bullseye/main amd64 libfcgi-bin amd64 2.4.2-2 [12.9 kB] Get:344 http://deb.debian.org/debian bullseye/main amd64 libfile-slurp-perl all 9999.32-1 [28.1 kB] Get:345 http://deb.debian.org/debian bullseye/main amd64 libfont-afm-perl all 1.20-3 [14.0 kB] Get:346 http://deb.debian.org/debian bullseye/main amd64 libfreezethaw-perl all 0.5001-2.1 [16.9 kB] Get:347 http://deb.debian.org/debian bullseye/main amd64 libsvg-perl all 2.85-1 [64.4 kB] Get:348 http://deb.debian.org/debian bullseye/main amd64 libgd-svg-perl all 0.33-3 [59.9 kB] Get:349 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:350 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:351 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-data all 2.66.8-1+deb11u4 [1178 kB] Get:352 http://deb.debian.org/debian bullseye/main amd64 libgpm2 amd64 1.20.7-8 [35.6 kB] Get:353 http://deb.debian.org/debian bullseye/main amd64 libheap-perl all 0.80-3 [34.2 kB] Get:354 http://deb.debian.org/debian bullseye/main amd64 libset-object-perl amd64 1.41-1 [40.1 kB] Get:355 http://deb.debian.org/debian bullseye/main amd64 libgraph-perl all 1:0.9716-2 [109 kB] Get:356 http://deb.debian.org/debian bullseye/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:357 http://deb.debian.org/debian bullseye/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:358 http://deb.debian.org/debian bullseye/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get:359 http://deb.debian.org/debian bullseye/main amd64 libgts-bin amd64 0.7.6+darcs121130-4+b1 [50.3 kB] Get:360 http://deb.debian.org/debian bullseye/main amd64 libguard-perl amd64 1.023-1+b7 [15.6 kB] Get:361 http://deb.debian.org/debian bullseye/main amd64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:362 http://deb.debian.org/debian bullseye/main amd64 libhtml-format-perl all 2.12-1.1 [43.8 kB] Get:363 http://deb.debian.org/debian bullseye/main amd64 libhtml-tableextract-perl all 2.15-1.1 [30.4 kB] Get:364 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:365 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:366 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.239.06-1 [27.5 kB] Get:367 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:368 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:369 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get:370 http://deb.debian.org/debian bullseye/main amd64 libio-sessiondata-perl all 1.03-1.1 [5984 B] Get:371 http://deb.debian.org/debian bullseye/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:372 http://deb.debian.org/debian bullseye/main amd64 libjcode-pm-perl amd64 2.06-1+b1 [28.4 kB] Get:373 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:374 http://deb.debian.org/debian bullseye/main amd64 libtypes-serialiser-perl all 1.01-1 [12.2 kB] Get:375 http://deb.debian.org/debian bullseye/main amd64 libjson-xs-perl amd64 4.030-1+b1 [94.9 kB] Get:376 http://deb.debian.org/debian bullseye/main amd64 libldap-common all 2.4.57+dfsg-3+deb11u1 [95.8 kB] Get:377 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:378 http://deb.debian.org/debian bullseye/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:379 http://deb.debian.org/debian bullseye/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:380 http://deb.debian.org/debian bullseye/main amd64 libmath-derivative-perl all 1.01-1.1 [9092 B] Get:381 http://deb.debian.org/debian bullseye/main amd64 libmath-spline-perl all 0.02-2 [7644 B] Get:382 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:383 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:384 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:385 http://deb.debian.org/debian bullseye/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:386 http://deb.debian.org/debian bullseye/main amd64 libmldbm-perl all 2.05-2.1 [18.6 kB] Get:387 http://deb.debian.org/debian bullseye/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:388 http://deb.debian.org/debian bullseye/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:389 http://deb.debian.org/debian bullseye/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:390 http://deb.debian.org/debian bullseye/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:391 http://deb.debian.org/debian bullseye/main amd64 libole-storage-lite-perl all 0.20-1 [23.9 kB] Get:392 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1+deb11u1 [553 kB] Get:393 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get:394 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get:395 http://deb.debian.org/debian bullseye/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b9 [37.9 kB] Get:396 http://deb.debian.org/debian bullseye/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b9 [28.8 kB] Get:397 http://deb.debian.org/debian bullseye/main amd64 libpackage-stash-xs-perl amd64 0.29-1+b2 [20.2 kB] Get:398 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:399 http://deb.debian.org/debian bullseye/main amd64 libpostscript-perl all 0.06-3.1 [26.0 kB] Get:400 http://deb.debian.org/debian bullseye/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:401 http://deb.debian.org/debian bullseye/main amd64 libref-util-perl all 0.204-1 [17.1 kB] Get:402 http://deb.debian.org/debian bullseye/main amd64 libref-util-xs-perl amd64 0.117-1+b3 [13.9 kB] Get:403 http://deb.debian.org/debian bullseye/main amd64 rubygems-integration all 1.18 [6704 B] Get:404 http://deb.debian.org/debian bullseye/main amd64 ruby2.7 amd64 2.7.4-1+deb11u1 [747 kB] Get:405 http://deb.debian.org/debian bullseye/main amd64 ruby-rubygems all 3.2.5-2 [281 kB] Get:406 http://deb.debian.org/debian bullseye/main amd64 ruby amd64 1:2.7+2 [11.7 kB] Get:407 http://deb.debian.org/debian bullseye/main amd64 rake all 13.0.3-1 [84.7 kB] Get:408 http://deb.debian.org/debian bullseye/main amd64 ruby-minitest all 5.13.0-1 [57.3 kB] Get:409 http://deb.debian.org/debian bullseye/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:410 http://deb.debian.org/debian bullseye/main amd64 ruby-power-assert all 1.1.7-2 [11.5 kB] Get:411 http://deb.debian.org/debian bullseye/main amd64 ruby-test-unit all 3.3.9-1 [86.1 kB] Get:412 http://deb.debian.org/debian bullseye/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:413 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:414 http://deb.debian.org/debian bullseye/main amd64 libruby2.7 amd64 2.7.4-1+deb11u1 [4202 kB] Get:415 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules amd64 2.1.27+dfsg-2.1+deb11u1 [104 kB] Get:416 http://deb.debian.org/debian bullseye/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:417 http://deb.debian.org/debian bullseye/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:418 http://deb.debian.org/debian bullseye/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:419 http://deb.debian.org/debian bullseye/main amd64 libsort-naturally-perl all 1.03-2 [13.5 kB] Get:420 http://deb.debian.org/debian bullseye/main amd64 libspreadsheet-writeexcel-perl all 2.40-1.1 [538 kB] Get:421 http://deb.debian.org/debian bullseye/main amd64 libunicode-map-perl amd64 0.112-12+b3 [145 kB] Get:422 http://deb.debian.org/debian bullseye/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1.1+deb11u1 [150 kB] Get:423 http://deb.debian.org/debian bullseye/main amd64 libsvg-graph-perl all 0.02-3 [114 kB] Get:424 http://deb.debian.org/debian bullseye/main amd64 libtext-csv-xs-perl amd64 1.45-1 [130 kB] Get:425 http://deb.debian.org/debian bullseye/main amd64 libtext-iconv-perl amd64 1.7-7+b1 [16.1 kB] Get:426 http://deb.debian.org/debian bullseye/main amd64 libtie-ixhash-perl all 1.23-2.1 [11.8 kB] Get:427 http://deb.debian.org/debian bullseye/main amd64 libtype-tiny-xs-perl amd64 0.022-1 [25.8 kB] Get:428 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:429 http://deb.debian.org/debian bullseye/main amd64 libxml-filter-buffertext-perl all 1.01-6 [6916 B] Get:430 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get:431 http://deb.debian.org/debian bullseye/main amd64 libxml-libxslt-perl amd64 1.99-1+b1 [47.3 kB] Get:432 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-writer-perl all 0.57-1.1 [22.8 kB] Get:433 http://deb.debian.org/debian bullseye/main amd64 libxmlrpc-lite-perl all 0.717-4 [22.6 kB] Get:434 http://deb.debian.org/debian bullseye/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:435 http://deb.debian.org/debian bullseye/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:436 http://deb.debian.org/debian bullseye/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:437 http://deb.debian.org/debian bullseye/main amd64 lynx-common all 2.9.0dev.6-3~deb11u1 [1192 kB] Get:438 http://deb.debian.org/debian bullseye/main amd64 lynx amd64 2.9.0dev.6-3~deb11u1 [652 kB] Get:439 http://deb.debian.org/debian bullseye/main amd64 mafft amd64 7.475-1 [1051 kB] Get:440 http://deb.debian.org/debian bullseye/main amd64 maq amd64 0.7.1-9 [303 kB] Get:441 http://deb.debian.org/debian bullseye/main amd64 med-config all 3.7 [21.6 kB] Get:442 http://deb.debian.org/debian bullseye/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:443 http://deb.debian.org/debian bullseye/main amd64 mustang amd64 3.2.3-4 [105 kB] Get:444 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:445 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:446 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+-legacy all 2.11.0+ds-1 [13.1 kB] Get:447 http://deb.debian.org/debian bullseye/main amd64 ncoils amd64 2002-8 [22.0 kB] Get:448 http://deb.debian.org/debian bullseye/main amd64 openmpi-common all 4.1.0-10 [179 kB] Get:449 http://deb.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.1.0-10 [238 kB] Get:450 http://deb.debian.org/debian bullseye/main amd64 pal2nal all 14.1-3 [17.8 kB] Get:451 http://deb.debian.org/debian bullseye/main amd64 paml amd64 4.9j+dfsg-3 [685 kB] Get:452 http://deb.debian.org/debian bullseye/main amd64 perl-doc all 5.32.1-4+deb11u3 [7663 kB] Get:453 http://deb.debian.org/debian bullseye/main amd64 perl-tk amd64 1:804.035-0.1+b1 [2016 kB] Get:454 http://deb.debian.org/debian bullseye/main amd64 pftools amd64 3.2.6-1 [45.8 MB] Get:455 http://deb.debian.org/debian bullseye/main amd64 phylip amd64 1:3.697+dfsg-2 [919 kB] Get:456 http://deb.debian.org/debian bullseye/main amd64 phyml amd64 3:3.3.20200621-1 [1781 kB] Get:457 http://deb.debian.org/debian bullseye/main amd64 poa amd64 2.0+20060928-8 [53.2 kB] Get:458 http://deb.debian.org/debian bullseye/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get:459 http://deb.debian.org/debian bullseye/main amd64 primer3 amd64 2.4.0-4 [181 kB] Get:460 http://deb.debian.org/debian bullseye/main amd64 probalign amd64 1.4-9 [67.0 kB] Get:461 http://deb.debian.org/debian bullseye/main amd64 probcons amd64 1.12-13 [119 kB] Get:462 http://deb.debian.org/debian bullseye/main amd64 proda amd64 1.0-13 [64.9 kB] Get:463 http://deb.debian.org/debian bullseye/main amd64 psmisc amd64 23.4-2 [198 kB] Get:464 http://deb.debian.org/debian bullseye/main amd64 publicsuffix all 20220811.1734-0+deb11u1 [127 kB] Get:465 http://deb.debian.org/debian bullseye/main amd64 raxml amd64 8.2.12+dfsg-6+b4 [1434 kB] Get:466 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:467 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:468 http://deb.debian.org/debian bullseye/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:469 http://deb.debian.org/debian bullseye/main amd64 ssl-cert all 1.1.0+nmu1 [21.0 kB] Get:470 http://deb.debian.org/debian bullseye/main amd64 t-coffee amd64 13.41.0.28bdc39+dfsg-4 [1003 kB] Get:471 http://deb.debian.org/debian bullseye/main amd64 tigr-glimmer amd64 3.02b-5 [286 kB] Get:472 http://deb.debian.org/debian bullseye/main amd64 tm-align amd64 20190822+dfsg-2 [865 kB] Get:473 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:474 http://deb.debian.org/debian bullseye/main amd64 wise-data all 2.4.1-23 [78.2 kB] Get:475 http://deb.debian.org/debian bullseye/main amd64 wise amd64 2.4.1-23 [994 kB] Get:476 http://deb.debian.org/debian bullseye/main amd64 xauth amd64 1:1.1-1 [40.5 kB] Get:477 http://deb.debian.org/debian bullseye/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:478 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 387 MB in 6s (67.9 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../00-libapparmor1_2.13.6-10_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.6-10) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.12.28-0+deb11u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package dbus. Preparing to unpack .../03-dbus_1.12.28-0+deb11u1_amd64.deb ... Unpacking dbus (1.12.28-0+deb11u1) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../04-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../05-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../06-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../07-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../08-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package libapr1:amd64. Preparing to unpack .../09-libapr1_1.7.0-6+deb11u2_amd64.deb ... Unpacking libapr1:amd64 (1.7.0-6+deb11u2) ... Selecting previously unselected package libaprutil1:amd64. Preparing to unpack .../10-libaprutil1_1.6.1-5+deb11u1_amd64.deb ... Unpacking libaprutil1:amd64 (1.6.1-5+deb11u1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../11-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../12-libaprutil1-dbd-sqlite3_1.6.1-5+deb11u1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../13-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../14-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../15-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../16-libaprutil1-ldap_1.6.1-5+deb11u1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../17-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../18-libnghttp2-14_1.43.0-1+deb11u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../19-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../20-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../21-libssh2-1_1.9.0-2+deb11u1_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2+deb11u1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../22-libcurl4_7.74.0-1.3+deb11u12_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u12) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../23-libjansson4_2.13.1-1.1_amd64.deb ... Unpacking libjansson4:amd64 (2.13.1-1.1) ... Selecting previously unselected package liblua5.3-0:amd64. Preparing to unpack .../24-liblua5.3-0_5.3.3-1.1+deb11u1_amd64.deb ... Unpacking liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../25-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../27-apache2-bin_2.4.59-1~deb11u1_amd64.deb ... Unpacking apache2-bin (2.4.59-1~deb11u1) ... Selecting previously unselected package apache2-data. Preparing to unpack .../28-apache2-data_2.4.59-1~deb11u1_all.deb ... Unpacking apache2-data (2.4.59-1~deb11u1) ... Selecting previously unselected package apache2-utils. Preparing to unpack .../29-apache2-utils_2.4.59-1~deb11u1_amd64.deb ... Unpacking apache2-utils (2.4.59-1~deb11u1) ... Selecting previously unselected package media-types. Preparing to unpack .../30-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../31-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../32-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../33-libncurses6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../34-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../35-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... 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Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up mysql-common (5.8+1.0.7) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libapparmor1:amd64 (2.13.6-10) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-8) ... Setting up fonts-noto-mono (20201225-1) ... Setting up probcons (1.12-13) ... Setting up java-common (0.72) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up libfcgi0ldbl:amd64 (2.4.2-2) ... Setting up poa (2.0+20060928-8) ... Setting up xdg-user-dirs (0.17-2) ... Setting up ruby-power-assert (1.1.7-2) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up gawk (1:5.1.0-1) ... Setting up psmisc (23.4-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... No schema files found: doing nothing. Setting up bwa (0.7.17-6+b1) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up unzip (6.0-26+deb11u1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up liblab-gamut1:amd64 (2.42.2-5) ... Setting up phylip (1:3.697+dfsg-2) ... Setting up libfcgi-bin (2.4.2-2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libapr1:amd64 (1.7.0-6+deb11u2) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up ncoils (2002-8) ... Setting up hyphy-common (2.5.28+dfsg-3) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b9) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up muscle (1:3.8.1551-2) ... Setting up bzip2 (1.0.8-4) ... Setting up emboss-data (6.6.0+dfsg-9) ... Setting up libldap-common (2.4.57+dfsg-3+deb11u1) ... Setting up probalign (1.4-9) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libjansson4:amd64 (2.13.1-1.1) ... Setting up t-coffee (13.41.0.28bdc39+dfsg-4) ... Setting up poppler-data (0.4.10-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Setting up ruby-minitest (5.13.0-1) ... Setting up mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libasound2-data (1.2.4-1.1) ... Setting up infernal (1.1.4-1) ... Setting up primer3 (2.4.0-4) ... Setting up zip (3.0-12) ... Setting up kalign (1:3.3-1+b3) ... Setting up libglib2.0-data (2.66.8-1+deb11u4) ... Setting up dialign-tx-data (1.0.2-13) ... Setting up lagan (2.0-6) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up mustang (3.2.3-4) ... Setting up ruby-test-unit (3.3.9-1) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up libjbig2dec0:amd64 (0.19-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libidn11:amd64 (1.33-3) ... Setting up proda (1.0-13) ... Setting up sim4 (0.0.20121010-8) ... Setting up libpathplan4:amd64 (2.42.2-5) ... Setting up libavahi-common-data:amd64 (0.8-5+deb11u2) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up dbus (1.12.28-0+deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xz-utils (5.2.5-2.1~deb11u1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up wise-data (2.4.1-23) ... Setting up libjs-prototype (1.7.1-3.1) ... Setting up lynx-common (2.9.0dev.6-3~deb11u1) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libltdl7:amd64 (2.4.6-15) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up alsa-topology-conf (1.2.4-1) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up paml (4.9j+dfsg-3) ... Setting up dialign-tx (1.0.2-13) ... Setting up liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Setting up pal2nal (14.1-3) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up fonts-liberation (1:1.07.4-11) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.0-10) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libopenjp2-7:amd64 (2.4.0-3) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2+deb11u1) ... Setting up netbase (6.3) ... Setting up libcdt5:amd64 (2.42.2-5) ... Setting up libcgraph6:amd64 (2.42.2-5) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up apache2-data (2.4.59-1~deb11u1) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up menu (2.1.48) ... Setting up libfido2-1:amd64 (1.6.0-2) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up tigr-glimmer (3.02b-5) ... Setting up dialign (2.2.1-11) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up publicsuffix (20220811.1734-0+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up exonerate (2.4.0-5) ... Setting up bedtools (2.30.0+dfsg-1) ... Setting up sqlite3 (3.34.1-3) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up maq (0.7.1-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up raxml (8.2.12+dfsg-6+b4) ... Setting up libaprutil1:amd64 (1.6.1-5+deb11u1) ... Setting up libgs9-common (9.53.3~dfsg-7+deb11u7) ... Setting up libgts-bin (0.7.6+darcs121130-4+b1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up alsa-ucm-conf (1.2.4-2) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libjs-scriptaculous (1.9.0-2.1) ... Setting up wise (2.4.1-23) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u12) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up hyphy-pt (2.5.28+dfsg-3) ... Setting up clustalo (1.2.4-7) ... Setting up libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Setting up tm-align (20190822+dfsg-2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up ssl-cert (1.1.0+nmu1) ... Setting up shared-mime-info (2.0-1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libgvpr2:amd64 (2.42.2-5) ... Setting up procps (2:3.3.17-5) ... Setting up libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u12) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up lynx (2.9.0dev.6-3~deb11u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libstaden-read14:amd64 (1.14.13-4) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up python3.9 (3.9.2-1) ... Setting up apache2-utils (2.4.59-1~deb11u1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (33.2-1) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up openssh-client (1:8.4p1-5+deb11u3) ... Setting up libpq5:amd64 (13.15-0+deb11u1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up python3 (3.9.2-3) ... Setting up rubygems-integration (1.18) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up samtools (1.11-1) ... Setting up libxnvctrl0:amd64 (470.239.06-1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libpackage-stash-xs-perl (0.29-1+b2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libset-object-perl (1.41-1) ... Setting up libdata-dump-perl (1.23-1.1) ... Setting up libref-util-perl (0.204-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up libxml-writer-perl (0.900-1) ... Setting up libcrypt-rc4-perl (2.02-3) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libio-html-perl (1.004-2) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libmath-derivative-perl (1.01-1.1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libset-scalar-perl (1.29-2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libtype-tiny-xs-perl (0.022-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up xauth (1:1.1-1) ... Setting up libjson-perl (4.03000-1) ... Setting up mummer (3.23+dfsg-7) ... Setting up libfcgi-perl:amd64 (0.79+ds-2) ... Setting up libsub-uplevel-perl (0.2800-1.1) ... Setting up libcarp-clan-perl (6.08-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libdevel-symdump-perl (2.18-4) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up mailcap (3.69) ... Setting up libguard-perl (1.023-1+b7) ... Setting up libpostscript-perl (0.06-3.1) ... Setting up libsort-naturally-perl (1.03-2) ... Setting up liburi-perl (5.08-1) ... Setting up libdbi-perl:amd64 (1.643-3+b1) ... Setting up libdate-manip-perl (6.83-1) ... Setting up libfile-sort-perl (1.01-2) ... Setting up libtext-csv-perl (2.00-1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up libmath-spline-perl (0.02-2) ... Setting up libanyevent-perl (7.170-2+b1) ... Setting up libjcode-pm-perl (2.06-1+b1) ... Setting up libio-sessiondata-perl (1.03-1.1) ... Setting up libberkeleydb-perl:amd64 (0.64-1+b1) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up libstring-approx-perl (3.28-1+b3) ... Setting up libhttp-date-perl (6.05-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libfile-slurp-perl (9999.32-1) ... Setting up libtie-ixhash-perl (1.23-2.1) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b9) ... Setting up libfile-listing-perl (6.14-1) ... Setting up mime-support (3.66) ... Setting up libgs9:amd64 (9.53.3~dfsg-7+deb11u7) ... Setting up libtest-requiresinternet-perl (0.05-3) ... Setting up libconvert-binary-c-perl (0.84-1) ... Setting up libclass-inspector-perl (1.36-1) ... Setting up libfont-afm-perl (1.20-3) ... Setting up bowtie (1.3.0+dfsg1-1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libref-util-xs-perl (0.117-1+b3) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up perl-tk (1:804.035-0.1+b1) ... Setting up libio-pty-perl (1:1.15-2) ... Setting up mafft (7.475-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libauthen-sasl-perl (2.1600-1.1) ... Setting up libbio-scf-perl:amd64 (1.03-5+b1) ... Setting up libfile-slurp-tiny-perl (0.004-1) ... Setting up libipc-sharelite-perl (0.17-4+b5) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libheap-perl (0.80-3) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libtype-tiny-perl (1.012001-2) ... Setting up perl-doc (5.32.1-4+deb11u3) ... Setting up libcommon-sense-perl (3.75-1+b4) ... Setting up libmldbm-perl (2.05-2.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up libsvg-perl (2.85-1) ... Setting up libnet-http-perl (6.20-1) ... Setting up libanyevent-http-perl (2.25-1) ... Setting up libbsd-resource-perl (1.2911-1+b5) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libdbd-pg-perl (3.14.2-1+b1) ... Setting up libtext-csv-xs-perl (1.45-1) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up libexception-class-perl (1.44-1) ... Setting up libxaw7:amd64 (2:1.0.13-1.1) ... Setting up libgraph-perl (1:0.9716-2) ... Setting up ghostscript (9.53.3~dfsg-7+deb11u7) ... Setting up apache2-bin (2.4.59-1~deb11u1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libyaml-perl (1.30-1) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up libspreadsheet-writeexcel-perl (2.40-1.1) ... Setting up libbit-vector-perl (7.4-1+b7) ... Setting up libfreezethaw-perl (0.5001-2.1) ... Setting up liberror-perl (0.17029-1) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up libdigest-perl-md5-perl (1.9-1.1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libreadonly-perl (2.050-3) ... Setting up libunicode-map-perl (0.112-12+b3) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libanyevent-cachedns-perl (0.08-2.1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up libdbd-mysql-perl:amd64 (4.050-3+b1) ... Setting up libipc-run-perl (20200505.0-1) ... Setting up libole-storage-lite-perl (0.20-1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1.1+deb11u1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtypes-serialiser-perl (1.01-1) ... Setting up libtree-dagnode-perl (1.32-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up pftools (3.2.6-1) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up emboss-lib (6.6.0+dfsg-9) ... Setting up libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up libev-perl (4.33-1+b1) ... Setting up libalgorithm-diff-xs-perl (0.04-6+b1) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libhtml-form-perl (6.07-1) ... Setting up libasync-interrupt-perl (1.26-1+b1) ... Setting up libbio-perl-run-perl (1.7.3-6) ... Setting up ncbi-blast+-legacy (2.11.0+ds-1) ... Setting up libjson-xs-perl (4.030-1+b1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up emboss (6.6.0+dfsg-9) ... Setting up libdate-calc-perl (6.4-1.1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdate-calc-xs-perl (6.4-1+b6) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up apache2 (2.4.59-1~deb11u1) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. info: Executing deferred 'a2enconf javascript-common' for package javascript-common Enabling conf javascript-common. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libcgi-pm-perl (4.51-1) ... Setting up libtest-differences-perl (0.67-1) ... Setting up libhtml-format-perl (2.12-1.1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbio-tools-run-alignment-clustalw-perl (1.7.4-2) ... Setting up libgd-perl (2.73-1+b1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libgvc6 (2.42.2-5) ... Setting up libxml-filter-buffertext-perl (1.01-6) ... Setting up libace-perl (1.92-10) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-1.1) ... Setting up libhttp-daemon-perl (6.12-1+deb11u1) ... Setting up libgd-svg-perl (0.33-3) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20200621-1) ... Setting up graphviz (2.42.2-5) ... Setting up libxml-sax-writer-perl (0.57-1.1) ... Setting up libsvg-graph-perl (0.02-3) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libtest-most-perl (0.37-1) ... Setting up libcgi-fast-perl (1:2.15-1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmime-tools-perl (5.509-1) ... Setting up libarray-compare-perl (3.0.8-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libxml-libxslt-perl (1.99-1+b1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up bioperl (1.7.7-2) ... Setting up libbio-coordinate-perl (1.7.1-4) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up libwww-perl (6.52-1) ... Setting up openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libbio-asn1-entrezgene-perl (1.730-2) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.23+9-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up libbio-eutilities-perl (1.77-1) ... Setting up ruby (1:2.7+2) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up libapache2-mod-perl2 (2.0.11-4) ... apache2_invoke: Enable module perl invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libapache2-reload-perl (0.13-3) ... Setting up rake (13.0.3-1) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libbio-tools-run-remoteblast-perl (1.7.3-3) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:ssl-cert-snakeoil.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up libxml-parser-perl:amd64 (2.46-2) ... Setting up libvm-ec2-perl (1.28-2) ... Setting up libxml-twig-perl (1:3.52-1) ... Setting up ruby-rubygems (3.2.5-2) ... Setting up libruby2.7:amd64 (2.7.4-1+deb11u1) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libbio-db-ncbihelper-perl (1.7.6-4) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-3.1) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Setting up libbio-db-seqfeature-perl (1.7.4-1) ... Setting up libbio-graphics-perl (2.40-6) ... Setting up libsoap-lite-perl (1.27-1) ... Setting up libgraphviz-perl (2.24-1) ... Setting up libxml-dom-perl (1.46-1) ... Setting up ruby2.7 (2.7.4-1+deb11u1) ... Setting up gbrowse (2.56+dfsg-8) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Setting up gbrowse-calign (2.56+dfsg-8+b1) ... Setting up libxml-dom-xpath-perl (0.14-3) ... Setting up libbio-variation-perl (1.7.5-2) ... Setting up libxmlrpc-lite-perl (0.717-4) ... Setting up libbio-featureio-perl (1.6.905-2) ... Setting up libbio-cluster-perl (1.7.3-5) ... Setting up bioperl-run (1.7.3-6) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Processing triggers for menu (2.1.48) ... Setting up blends-common (0.7.2) ... Setting up med-config (3.7) ... Adding group `med' (GID 154) ... Done. WARNING: tempfile is deprecated; consider using mktemp instead. Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', '-y', 'install', 'gbrowse-calign=2.56+dfsg-8+b1'] 1m27.5s INFO: Running scripts post_install 1m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_install_exceptions'] 1m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_install_exceptions'] 1m27.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 1m29.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 1m33.4s ERROR: WARN: Broken symlinks: /usr/share/gbrowse/htdocs/i -> /var/cache/gbrowse/images (gbrowse) /usr/lib/jvm/java-11-openjdk-amd64/lib/src.zip -> ../../openjdk-11/src.zip (openjdk-11-jdk-headless:amd64) /usr/lib/jvm/java-11-openjdk-amd64/lib/security/blacklisted.certs -> /etc/java-11-openjdk/security/blacklisted.certs (openjdk-11-jre-headless:amd64) 1m33.4s INFO: /bin converted to /usr/bin by /usr merge 1m33.4s INFO: /lib converted to /usr/lib by /usr merge 1m33.4s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m33.4s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m33.4s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m33.4s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m33.4s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m33.4s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 1m33.4s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 1m33.4s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m33.4s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m33.4s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m33.4s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m33.4s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m33.4s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m33.4s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m33.4s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m33.4s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m33.4s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m33.4s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m33.4s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m33.4s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m33.5s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m33.5s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m33.5s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m33.5s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m33.5s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m33.5s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m33.5s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m33.5s INFO: /sbin converted to /usr/sbin by /usr merge 1m35.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', '-ac', '--ignore-obsolete'] 1m40.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', '-ac', '--ignore-obsolete'] 1m40.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m40.3s DUMP: 0.15.6 1m40.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m40.3s INFO: Running adequate version 0.15.6 now. 1m40.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'gbrowse-calign'] 1m40.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'gbrowse-calign'] 1m40.4s INFO: Running scripts pre_remove 1m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m52.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m52.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m52.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m52.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_exceptions'] 1m52.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/pre_remove_exceptions'] 1m52.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m52.9s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed alsa-topology-conf alsa-topology-conf 1.2.4-1 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.4-2 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-2 install ok installed apache2 apache2 2.4.59-1~deb11u1 install ok installed apache2-bin apache2-bin 2.4.59-1~deb11u1 install ok installed apache2-data apache2-data 2.4.59-1~deb11u1 install ok installed apache2-utils apache2-utils 2.4.59-1~deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bedtools bedtools 2.30.0+dfsg-1 install ok installed bioperl bioperl 1.7.7-2 install ok installed bioperl-run bioperl-run 1.7.3-6 install ok installed blends-common blends-common 0.7.2 install ok installed bowtie bowtie 1.3.0+dfsg1-1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed bwa bwa 0.7.17-6+b1 install ok installed bzip2 bzip2 1.0.8-4 install ok installed ca-certificates ca-certificates 20210119 install ok installed ca-certificates-java ca-certificates-java 20190909+deb11u1 install ok installed clustalo clustalo 1.2.4-7 install ok installed clustalw clustalw 2.1+lgpl-7 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed dbus dbus 1.12.28-0+deb11u1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed default-jdk-headless default-jdk-headless 2:1.11-72 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed dialign dialign 2.2.1-11 install ok installed dialign-tx dialign-tx 1.0.2-13 install ok installed dialign-tx-data dialign-tx-data 1.0.2-13 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed emboss emboss 6.6.0+dfsg-9 install ok installed emboss-data emboss-data 6.6.0+dfsg-9 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-9 install ok installed exonerate exonerate 2.4.0-5 install ok installed file file 1:5.39-3+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-11 install ok installed fonts-noto-mono fonts-noto-mono 20201225-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed fsa fsa 1.15.9+dfsg-6 install ok installed gawk gawk 1:5.1.0-1 install ok installed gbrowse gbrowse 2.56+dfsg-8 install ok installed gbrowse-calign gbrowse-calign 2.56+dfsg-8+b1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed ghostscript ghostscript 9.53.3~dfsg-7+deb11u7 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed graphviz graphviz 2.42.2-5 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hmmer hmmer 3.3.2+dfsg-1 install ok installed hostname hostname 3.23 install ok installed hyphy-common hyphy-common 2.5.28+dfsg-3 install ok installed hyphy-pt hyphy-pt 2.5.28+dfsg-3 install ok installed ibverbs-providers:amd64 ibverbs-providers 33.2-1 install ok installed infernal infernal 1.1.4-1 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed java-common java-common 0.72 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kalign kalign 1:3.3-1+b3 install ok installed lagan lagan 2.0-6 install ok installed libace-perl libace-perl 1.92-10 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-6+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-7 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-2.1 install ok installed libanyevent-http-perl libanyevent-http-perl 2.25-1 install ok installed libanyevent-perl libanyevent-perl 7.170-2+b1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.11-4 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-3 install ok installed libapparmor1:amd64 libapparmor1 2.13.6-10 install ok installed libapr1:amd64 libapr1 1.7.0-6+deb11u2 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-5+deb11u1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-5+deb11u1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-5+deb11u1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libargtable2-0 libargtable2-0 13-1.1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.8-1 install ok installed libasound2:amd64 libasound2 1.2.4-1.1 install ok installed libasound2-data libasound2-data 1.2.4-1.1 install ok installed libasync-interrupt-perl libasync-interrupt-perl 1.26-1+b1 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1.1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5+deb11u2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5+deb11u2 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5+deb11u2 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.24-1.1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.22-1+b3 install ok installed libberkeleydb-perl:amd64 libberkeleydb-perl 0.64-1+b1 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.730-2 install ok installed libbio-cluster-perl libbio-cluster-perl 1.7.3-5 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-4 install ok installed libbio-db-biofetch-perl libbio-db-biofetch-perl 1.7.3-4 install ok installed libbio-db-gff-perl libbio-db-gff-perl 1.7.4-1 install ok installed libbio-db-ncbihelper-perl libbio-db-ncbihelper-perl 1.7.6-4 install ok installed libbio-db-seqfeature-perl libbio-db-seqfeature-perl 1.7.4-1 install ok installed libbio-eutilities-perl libbio-eutilities-perl 1.77-1 install ok installed libbio-featureio-perl libbio-featureio-perl 1.6.905-2 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-6 install ok installed libbio-perl-perl libbio-perl-perl 1.7.7-2 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.3-6 install ok installed libbio-scf-perl:amd64 libbio-scf-perl 1.03-5+b1 install ok installed libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-clustalw-perl 1.7.4-2 install ok installed libbio-tools-run-remoteblast-perl libbio-tools-run-remoteblast-perl 1.7.3-3 install ok installed libbio-variation-perl libbio-variation-perl 1.7.5-2 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b7 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-1+b5 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.08-1 install ok installed libcbor0:amd64 libcbor0 0.5.0+dfsg-2 install ok installed libcdt5:amd64 libcdt5 2.42.2-5 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.15-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.51-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-3 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-5 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.36-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.13-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-3+b7 install ok installed libclone-perl libclone-perl 0.45-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcommon-sense-perl libcommon-sense-perl 3.75-1+b4 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.84-1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcups2:amd64 libcups2 2.3.3op2-3+deb11u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+deb11u12 install ok installed libcurl4:amd64 libcurl4 7.74.0-1.3+deb11u12 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1.1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1.1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b6 install ok installed libdate-manip-perl libdate-manip-perl 6.83-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-3+b1 install ok installed libdbd-pg-perl libdbd-pg-perl 3.14.2-1+b1 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.66-1+b1 install ok installed libdbi-perl:amd64 libdbi-perl 1.643-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.28-0+deb11u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libdevel-callchecker-perl libdevel-callchecker-perl 0.008-1+b2 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-4 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1.1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-1.1 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libev-perl libev-perl 4.33-1+b1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.002002-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfabric1 libfabric1 1.11.0-2 install ok installed libfcgi-bin libfcgi-bin 2.4.2-2 install ok installed libfcgi-perl:amd64 libfcgi-perl 0.79+ds-2 install ok installed libfcgi0ldbl:amd64 libfcgi0ldbl 2.4.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfido2-1:amd64 libfido2-1 1.6.0-2 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.32-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-1 install ok installed libfile-sort-perl libfile-sort-perl 1.01-2 install ok installed libfont-afm-perl libfont-afm-perl 1.20-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-2.1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd-perl libgd-perl 2.73-1+b1 install ok installed libgd-svg-perl libgd-svg-perl 0.33-3 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u4 install ok installed libglib2.0-data libglib2.0-data 2.66.8-1+deb11u4 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-8 install ok installed libgraph-perl libgraph-perl 1:0.9716-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgraphviz-perl libgraphviz-perl 2.24-1 install ok installed libgs9:amd64 libgs9 9.53.3~dfsg-7+deb11u7 install ok installed libgs9-common libgs9-common 9.53.3~dfsg-7+deb11u7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4+b1 install ok installed libguard-perl libguard-perl 1.023-1+b7 install ok installed libgvc6 libgvc6 2.42.2-5 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libheap-perl libheap-perl 0.80-3 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.07-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1.1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.75-1+b1 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-1.1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libhtscodecs2:amd64 libhtscodecs2 0.5-3 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.12-1+deb11u1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.28-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.4.1+dfsg-1 install ok installed libhwloc15:amd64 libhwloc15 2.4.1+dfsg-1 install ok installed libibverbs1:amd64 libibverbs1 33.2-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn11:amd64 libidn11 1.33-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-15 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-pty-perl libio-pty-perl 1:1.15-2 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1.1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.069-1 install ok installed libio-string-perl libio-string-perl 1.08-3.1 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20200505.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b5 install ok installed libjansson4:amd64 libjansson4 2.13.1-1.1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.19-2 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-prototype libjs-prototype 1.7.1-3.1 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2.1 install ok installed libjson-perl libjson-perl 4.03000-1 install ok installed libjson-xs-perl libjson-xs-perl 4.030-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.2-5 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-common libldap-common 2.4.57+dfsg-3+deb11u1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.430-2 install ok installed liblist-moreutils-xs-perl liblist-moreutils-xs-perl 0.430-2 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed libltdl7:amd64 libltdl7 2.4.6-15 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.3-1.1+deb11u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmagic-mgc libmagic-mgc 1:5.39-3+deb11u1 install ok installed libmagic1:amd64 libmagic1 1:5.39-3+deb11u1 install ok installed libmailtools-perl libmailtools-perl 2.21-1 install ok installed libmariadb3:amd64 libmariadb3 1:10.5.23-0+deb11u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-1.1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libmldbm-perl libmldbm-perl 2.05-2.1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1.1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-1 install ok installed libmoo-perl libmoo-perl 2.004004-1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnet-http-perl libnet-http-perl 6.20-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-3+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.29-1 install ok installed libnss3:amd64 libnss3 2:3.61-1+deb11u3 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.20-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.4.0-3 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.0-10 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b9 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b9 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.39-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.29-1+b2 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libparams-classify-perl libparams-classify-perl 0.015-1+b3 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.1-1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libpmix2:amd64 libpmix2 4.0.0-4.1+deb11u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpostscript-perl libpostscript-perl 0.06-3.1 install ok installed libpq5:amd64 libpq5 13.15-0+deb11u1 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed librdmacm1:amd64 librdmacm1 33.2-1 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed libreadonly-perl libreadonly-perl 2.050-3 install ok installed libref-util-perl libref-util-perl 0.204-1 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-1+b3 install ok installed librole-tiny-perl librole-tiny-perl 2.002004-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libruby2.7:amd64 libruby2.7 2.7.4-1+deb11u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libset-object-perl libset-object-perl 1.41-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.13-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-2 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1.1+deb11u1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2+deb11u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstaden-read14:amd64 libstaden-read14 1.14.13-4 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0800-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libstrictures-perl libstrictures-perl 2.000006-1 install ok installed libstring-approx-perl libstring-approx-perl 3.28-1+b3 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.14-1+b3 install ok installed libsub-name-perl libsub-name-perl 0.26-1+b1 install ok installed libsub-quote-perl libsub-quote-perl 2.006006-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1.1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-3 install ok installed libsvg-perl libsvg-perl 2.85-1 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.38-1+b2 install ok installed libtest-deep-perl libtest-deep-perl 1.130-1 install ok installed libtest-differences-perl libtest-differences-perl 0.67-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.37-1 install ok installed libtest-requiresinternet-perl libtest-requiresinternet-perl 0.05-3 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-csv-perl libtext-csv-perl 2.00-1 install ok installed libtext-csv-xs-perl libtext-csv-xs-perl 1.45-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-7+b1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2.1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.32-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.012001-2 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.022-1 install ok installed libtypes-serialiser-perl libtypes-serialiser-perl 1.01-1 install ok installed libucx0:amd64 libucx0 1.10.1~rc1+really.1.10.0-1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunicode-map-perl libunicode-map-perl 0.112-12+b3 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed liburi-perl liburi-perl 5.08-1 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libvariable-magic-perl libvariable-magic-perl 0.62-1+b3 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-2 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwww-perl libwww-perl 6.52-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1.1 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml-dom-perl libxml-dom-perl 1.46-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-3 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-6 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-2+b1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.99-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1.1 install ok installed libxml-parser-perl:amd64 libxml-parser-perl 2.46-2 install ok installed libxml-perl libxml-perl 0.08-3.1 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1.1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1.1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-1 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-1.1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-1 install ok installed libxml-writer-perl libxml-writer-perl 0.900-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-4 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.239.06-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.34-4+deb11u1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.82+repack-1+b1 install ok installed libyaml-perl libyaml-perl 1.30-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed lynx lynx 2.9.0dev.6-3~deb11u1 install ok installed lynx-common lynx-common 2.9.0dev.6-3~deb11u1 install ok installed mafft mafft 7.475-1 install ok installed mailcap mailcap 3.69 install ok installed maq maq 0.7.1-9 install ok installed mariadb-common mariadb-common 1:10.5.23-0+deb11u1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed med-config med-config 3.7 install ok installed media-types media-types 4.0.0 install ok installed menu menu 2.1.48 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed mummer mummer 3.23+dfsg-7 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-4 install ok installed mysql-common mysql-common 5.8+1.0.7 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncoils ncoils 2002-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed netbase netbase 6.3 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-2 install ok installed openjdk-11-jdk-headless:amd64 openjdk-11-jdk-headless 11.0.23+9-1~deb11u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.23+9-1~deb11u1 install ok installed openmpi-bin openmpi-bin 4.1.0-10 install ok installed openmpi-common openmpi-common 4.1.0-10 install ok installed openssh-client openssh-client 1:8.4p1-5+deb11u3 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed pal2nal pal2nal 14.1-3 install ok installed paml paml 4.9j+dfsg-3 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-doc perl-doc 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed perl-tk perl-tk 1:804.035-0.1+b1 install ok installed pftools pftools 3.2.6-1 install ok installed phylip phylip 1:3.697+dfsg-2 install ok installed phyml phyml 3:3.3.20200621-1 install ok installed poa poa 2.0+20060928-8 install ok installed poppler-data poppler-data 0.4.10-1 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed primer3 primer3 2.4.0-4 install ok installed probalign probalign 1.4-9 install ok installed probcons probcons 1.12-13 install ok installed procps procps 2:3.3.17-5 install ok installed proda proda 1.0-13 install ok installed psmisc psmisc 23.4-2 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb11u1 install ok installed python3 python3 3.9.2-3 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed rake rake 13.0.3-1 install ok installed raxml raxml 8.2.12+dfsg-6+b4 install ok installed readline-common readline-common 8.1-1 install ok installed ruby ruby 1:2.7+2 install ok installed ruby-minitest ruby-minitest 5.13.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.7-2 install ok installed ruby-rubygems ruby-rubygems 3.2.5-2 install ok installed ruby-test-unit ruby-test-unit 3.3.9-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.7 ruby2.7 2.7.4-1+deb11u1 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed samtools samtools 1.11-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed sim4 sim4 0.0.20121010-8 install ok installed sqlite3 sqlite3 3.34.1-3 install ok installed ssl-cert ssl-cert 1.1.0+nmu1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed t-coffee t-coffee 13.41.0.28bdc39+dfsg-4 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tigr-glimmer tigr-glimmer 3.02b-5 install ok installed tm-align tm-align 20190822+dfsg-2 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed wise wise 2.4.1-23 install ok installed wise-data wise-data 2.4.1-23 install ok installed x11-common x11-common 1:7.7+22 install ok installed xauth xauth 1:1.1-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xz-utils xz-utils 5.2.5-2.1~deb11u1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 1m52.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m52.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-ncbihelper-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl:amd64', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip', 'gbrowse-calign'] 1m59.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: alsa-topology-conf alsa-ucm-conf amap-align apache2 apache2-bin apache2-data apache2-utils bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fonts-urw-base35 fsa gawk gbrowse gbrowse-calign ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign lagan libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libasync-interrupt-perl libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-eutilities-perl libbio-featureio-perl libbio-graphics-perl libbio-perl-perl libbio-perl-run-perl libbio-scf-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcommon-sense-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl liberror-perl libev-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgd-perl libgd-svg-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgts-0.7-5 libgts-bin libguard-perl libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery libjs-prototype libjs-scriptaculous libjson-perl libjson-xs-perl liblab-gamut1 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpdec3 libmpfr6 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libstaden-read14 libstatistics-descriptive-perl libstrictures-perl libstring-approx-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-11-jdk-headless openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.32 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons procps proda psmisc publicsuffix python3 python3-minimal python3.9 python3.9-minimal rake raxml readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils shared-mime-info sim4 sqlite3 ssl-cert t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip 0 upgraded, 0 newly installed, 478 to remove and 0 not upgraded. After this operation, 1527 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 33320 files and directories currently installed.) Removing alsa-topology-conf (1.2.4-1) ... Removing alsa-ucm-conf (1.2.4-2) ... Removing amap-align (2.2+git20080214.600fc29+dfsg-2) ... Removing gbrowse-calign (2.56+dfsg-8+b1) ... Removing gbrowse (2.56+dfsg-8) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.59-1~deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libapache2-reload-perl (0.13-3) ... Removing libbio-graphics-perl (2.40-6) ... Removing libbio-db-seqfeature-perl (1.7.4-1) ... Removing libbio-db-gff-perl (1.7.4-1) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.11-4) ... Removing apache2-bin (2.4.59-1~deb11u1) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.59-1~deb11u1) ... Removing apache2-utils (2.4.59-1~deb11u1) ... Removing bedtools (2.30.0+dfsg-1) ... Removing bioperl-run (1.7.3-6) ... Removing libbio-coordinate-perl (1.7.1-4) ... Removing bioperl (1.7.7-2) ... Removing med-config (3.7) ... Removing blends-common (0.7.2) ... Removing bowtie (1.3.0+dfsg1-1) ... Removing bwa (0.7.17-6+b1) ... Removing bzip2 (1.0.8-4) ... Removing default-jdk-headless (2:1.11-72) ... Removing openjdk-11-jdk-headless:amd64 (11.0.23+9-1~deb11u1) ... Removing default-jre-headless (2:1.11-72) ... Removing clustalo (1.2.4-7) ... Removing libbio-tools-run-alignment-clustalw-perl (1.7.4-2) ... Removing clustalw (2.1+lgpl-7) ... Removing dbus (1.12.28-0+deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-11) ... Removing dialign-tx (1.0.2-13) ... Removing dialign-tx-data (1.0.2-13) ... Removing emboss (6.6.0+dfsg-9) ... Removing emboss-data (6.6.0+dfsg-9) ... Removing emboss-lib (6.6.0+dfsg-9) ... Removing fsa (1.15.9+dfsg-6) ... Removing exonerate (2.4.0-5) ... Removing file (1:5.39-3+deb11u1) ... Removing libgraphviz-perl (2.24-1) ... Removing graphviz (2.42.2-5) ... Removing libgvc6 (2.42.2-5) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing perl-tk (1:804.035-0.1+b1) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libgd-svg-perl (0.33-3) ... Removing libgd-perl (2.73-1+b1) ... Removing libgd3:amd64 (2.3.0-2) ... Removing fonts-dejavu-core (2.37-2) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.0-2.1) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing fonts-liberation (1:1.07.4-11) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing fonts-noto-mono (20201225-1) ... Removing ghostscript (9.53.3~dfsg-7+deb11u7) ... Removing libgs9:amd64 (9.53.3~dfsg-7+deb11u7) ... Removing libgs9-common (9.53.3~dfsg-7+deb11u7) ... Removing mummer (3.23+dfsg-7) ... Removing gawk (1:5.1.0-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing hmmer (3.3.2+dfsg-1) ... Removing hyphy-pt (2.5.28+dfsg-3) ... Removing hyphy-common (2.5.28+dfsg-3) ... Removing phyml (3:3.3.20200621-1) ... Removing openmpi-bin (4.1.0-10) ... Removing libopenmpi3:amd64 (4.1.0-10) ... Removing libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Removing libfabric1 (1.11.0-2) ... Removing ibverbs-providers:amd64 (33.2-1) ... Removing infernal (1.1.4-1) ... Removing javascript-common (11+nmu1) ... Removing kalign (1:3.3-1+b3) ... Removing lagan (2.0-6) ... Removing libace-perl (1.92-10) ... Removing libtest-most-perl (0.37-1) ... Removing libtest-differences-perl (0.67-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-xs-perl (0.04-6+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libann0 (1.1.2+doc-7) ... Removing libvm-ec2-perl (1.28-2) ... Removing libanyevent-cachedns-perl (0.08-2.1) ... Removing libanyevent-http-perl (2.25-1) ... Removing libanyevent-perl (7.170-2+b1) ... Removing libapparmor1:amd64 (2.13.6-10) ... Removing libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Removing libaprutil1:amd64 (1.6.1-5+deb11u1) ... Removing libapr1:amd64 (1.7.0-6+deb11u2) ... Removing libargtable2-0 (13-1.1) ... Removing libarray-compare-perl (3.0.8-1) ... Removing libasync-interrupt-perl (1.26-1+b1) ... Removing libauthen-sasl-perl (2.1600-1.1) ... Removing libnamespace-clean-perl (0.27-1) ... Removing libb-hooks-endofscope-perl (0.24-1.1) ... Removing libpackage-stash-perl (0.39-1) ... Removing libmodule-implementation-perl (0.09-1.1) ... Removing libmoo-perl (2.004004-1) ... Removing libimport-into-perl (1.002005-1) ... Removing libmodule-runtime-perl (0.016-1) ... Removing libparams-classify-perl (0.015-1+b3) ... Removing libdevel-callchecker-perl (0.008-1+b2) ... Removing libb-hooks-op-check-perl (0.22-1+b3) ... Removing libberkeleydb-perl:amd64 (0.64-1+b1) ... Removing libbio-db-biofetch-perl (1.7.3-4) ... Removing libbio-eutilities-perl (1.77-1) ... Removing libbio-featureio-perl (1.6.905-2) ... Removing libbio-tools-run-remoteblast-perl (1.7.3-3) ... Removing libbio-perl-run-perl (1.7.3-6) ... Removing libbio-scf-perl:amd64 (1.03-5+b1) ... Removing libdate-calc-xs-perl (6.4-1+b6) ... Removing libdate-calc-perl (6.4-1.1) ... Removing libbit-vector-perl (7.4-1+b7) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u12) ... Removing libbsd-resource-perl (1.2911-1+b5) ... Removing lynx (2.9.0dev.6-3~deb11u1) ... Removing xauth (1:1.1-1) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libcarp-clan-perl (6.08-1) ... Removing openssh-client (1:8.4p1-5+deb11u3) ... Removing libfido2-1:amd64 (1.6.0-2) ... Removing libcbor0:amd64 (0.5.0+dfsg-2) ... Removing libgvpr2:amd64 (2.42.2-5) ... Removing libcgraph6:amd64 (2.42.2-5) ... Removing libcdt5:amd64 (2.42.2-5) ... Removing libcgi-fast-perl (1:2.15-1) ... Removing libcgi-session-perl (4.48-3) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-4) ... Removing libsoap-lite-perl (1.27-1) ... Removing libclass-inspector-perl (1.36-1) ... Removing librole-tiny-perl (2.002004-1) ... Removing libclass-method-modifiers-perl (2.13-1) ... Removing libclass-xsaccessor-perl (1.19-3+b7) ... Removing libclone-perl (0.45-1+b1) ... Removing libjson-xs-perl (4.030-1+b1) ... Removing libtypes-serialiser-perl (1.01-1) ... Removing libev-perl (4.33-1+b1) ... Removing libcommon-sense-perl (3.75-1+b4) ... Removing libconvert-binary-c-perl (0.84-1) ... Removing libmime-tools-perl (5.509-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1.1+deb11u1) ... Removing libcrypt-rc4-perl (2.02-3) ... Removing libstaden-read14:amd64 (1.14.13-4) ... Removing samtools (1.11-1) ... Removing libhts3:amd64 (1.11-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u12) ... Removing libdata-dump-perl (1.23-1.1) ... Removing libdate-manip-perl (6.83-1) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libdbd-mysql-perl:amd64 (4.050-3+b1) ... Removing libdbd-pg-perl (3.14.2-1+b1) ... Removing libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Removing libdbi-perl:amd64 (1.643-3+b1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libdevel-stacktrace-perl (2.0400-1) ... Removing libdevel-symdump-perl (2.18-4) ... Removing libdigest-perl-md5-perl (1.9-1.1) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing libdynaloader-functions-perl (0.003-1.1) ... Removing libxml-xpath-perl (1.44-1) ... Removing libxml-dom-xpath-perl (0.14-3) ... Removing libxml-dom-perl (1.46-1) ... Removing libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing ncbi-blast+-legacy (2.11.0+ds-1) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libtype-tiny-perl (1.012001-2) ... Removing libsvg-graph-perl (0.02-3) ... Removing libstatistics-descriptive-perl (3.0800-1) ... Removing liblist-moreutils-perl (0.430-2) ... Removing libexporter-tiny-perl (1.002002-1) ... Removing libfcgi-bin (2.4.2-2) ... Removing libfcgi-perl:amd64 (0.79+ds-2) ... Removing libfcgi0ldbl:amd64 (2.4.2-2) ... Removing pftools (3.2.6-1) ... Removing libfile-slurp-perl (9999.32-1) ... Removing libtree-dagnode-perl (1.32-1) ... Removing libfile-slurp-tiny-perl (0.004-1) ... Removing libfile-sort-perl (1.01-2) ... Removing libhtml-format-perl (2.12-1.1) ... Removing libfont-afm-perl (1.20-3) ... Removing libfreezethaw-perl (0.5001-2.1) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing perl-doc (5.32.1-4+deb11u3) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing mafft (7.475-1) ... Removing libhttp-daemon-perl (6.12-1+deb11u1) ... Removing libmailtools-perl (2.21-1) ... Removing libtext-csv-xs-perl (1.45-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b9) ... Removing libyaml-perl (1.30-1) ... Removing tm-align (20190822+dfsg-2) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing wise (2.4.1-23) ... Removing shared-mime-info (2.0-1) ... Removing libglib2.0-data (2.66.8-1+deb11u4) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libgpm2:amd64 (1.20.7-8) ... Removing libgraph-perl (1:0.9716-2) ... Removing libgts-bin (0.7.6+darcs121130-4+b1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Removing libguard-perl (1.023-1+b7) ... Removing libheap-perl (0.80-3) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Removing libhtml-form-perl (6.07-1) ... Removing libhtml-tableextract-perl (2.15-1.1) ... Removing libhtscodecs2:amd64 (0.5-3) ... Removing libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Removing libhwloc15:amd64 (2.4.1+dfsg-1) ... Removing librdmacm1:amd64 (33.2-1) ... Removing libibverbs1:amd64 (33.2-1) ... Removing libxaw7:amd64 (2:1.0.13-1.1) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libxml-libxslt-perl (1.99-1+b1) ... Removing libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Removing libidn11:amd64 (1.33-3) ... Removing libijs-0.35:amd64 (0.35-15) ... Removing libipc-run-perl (20200505.0-1) ... Removing libio-pty-perl (1:1.15-2) ... Removing libio-sessiondata-perl (1.03-1.1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libole-storage-lite-perl (0.20-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libjansson4:amd64 (2.13.1-1.1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjbig2dec0:amd64 (0.19-2) ... Removing libjcode-pm-perl (2.06-1+b1) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing libjs-scriptaculous (1.9.0-2.1) ... Removing libjs-prototype (1.7.1-3.1) ... Removing libjson-perl (4.03000-1) ... Removing liblab-gamut1:amd64 (2.42.2-5) ... Removing libpq5:amd64 (13.15-0+deb11u1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-common (2.4.57+dfsg-3+deb11u1) ... Removing liblist-moreutils-xs-perl (0.430-2) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libltdl7:amd64 (2.4.6-15) ... Removing liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Removing libmagic1:amd64 (1:5.39-3+deb11u1) ... Removing libmagic-mgc (1:5.39-3+deb11u1) ... Removing libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Removing libmath-spline-perl (0.02-2) ... Removing libmath-derivative-perl (1.01-1.1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libmldbm-perl (2.05-2.1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-1) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing procps (2:3.3.17-5) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.185-1) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libopenjp2-7:amd64 (2.4.0-3) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b9) ... Removing libpackage-stash-xs-perl (0.29-1+b2) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1.1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libpathplan4:amd64 (2.42.2-5) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpostscript-perl (0.06-3.1) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (10.2.1-6) ... Removing sqlite3 (3.34.1-3) ... Removing libreadline8:amd64 (8.1-1) ... Removing libreadonly-perl (2.050-3) ... Removing libref-util-perl (0.204-1) ... Removing libref-util-xs-perl (0.117-1+b3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libset-object-perl (1.41-1) ... Removing libset-scalar-perl (1.29-2) ... Removing libsigsegv2:amd64 (2.13-1) ... Removing libsort-naturally-perl (1.03-2) ... Removing libssh2-1:amd64 (1.9.0-2+deb11u1) ... Removing libstrictures-perl (2.000006-1) ... Removing libstring-approx-perl (3.28-1+b3) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.14-1+b3) ... Removing libsub-name-perl (0.26-1+b1) ... Removing libsub-quote-perl (2.006006-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1.1) ... Removing libsvg-perl (2.85-1) ... Removing libtask-weaken-perl (1.06-1) ... Removing libterm-readkey-perl (2.38-1+b2) ... Removing libtest-deep-perl (1.130-1) ... Removing libtest-requiresinternet-perl (0.05-3) ... Removing libtext-csv-perl (2.00-1) ... Removing libtext-iconv-perl (1.7-7+b1) ... Removing libthai-data (0.1.28-3) ... Removing libtie-ixhash-perl (1.23-2.1) ... Removing libtype-tiny-xs-perl (0.022-1) ... Removing libunicode-map-perl (0.112-12+b3) ... Removing libvariable-magic-perl (0.62-1+b3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxnvctrl0:amd64 (470.239.06-1) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxml-sax-writer-perl (0.57-1.1) ... Removing libxml-filter-buffertext-perl (1.01-6) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1.1) ... Removing libxml-perl (0.08-3.1) ... Removing libxml-regexp-perl (0.04-1.1) ... Removing libxml-sax-base-perl (1.09-1.1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libyaml-libyaml-perl (0.82+repack-1+b1) ... Removing lynx-common (2.9.0dev.6-3~deb11u1) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing maq (0.7.1-9) ... Removing mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing media-types (4.0.0) ... Removing menu (2.1.48) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-4) ... Removing mysql-common (5.8+1.0.7) ... Removing ncbi-data (6.1.20170106+dfsg1-9) ... Removing ncoils (2002-8) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-2) ... Removing openmpi-common (4.1.0-10) ... Removing ssl-cert (1.1.0+nmu1) ... Removing pal2nal (14.1-3) ... Removing paml (4.9j+dfsg-3) ... Removing phylip (1:3.697+dfsg-2) ... Removing poa (2.0+20060928-8) ... Removing poppler-data (0.4.10-1) ... Removing prank (0.0.170427+dfsg-3) ... Removing primer3 (2.4.0-4) ... Removing probalign (1.4-9) ... Removing probcons (1.12-13) ... Removing proda (1.0-13) ... Removing psmisc (23.4-2) ... Removing publicsuffix (20220811.1734-0+deb11u1) ... Removing raxml (8.2.12+dfsg-6+b4) ... Removing readline-common (8.1-1) ... Removing sim4 (0.0.20121010-8) ... Removing t-coffee (13.41.0.28bdc39+dfsg-4) ... Removing tigr-glimmer (3.02b-5) ... Removing unzip (6.0-26+deb11u1) ... Removing wise-data (2.4.1-23) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.5-2.1~deb11u1) ... Removing zip (3.0-12) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing rake (13.0.3-1) ... Removing openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... Removing ruby-rubygems (3.2.5-2) ... Removing ruby (1:2.7+2) ... Removing ruby2.7 (2.7.4-1+deb11u1) ... Removing rubygems-integration (1.18) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing fonts-urw-base35 (20200910-1) ... Removing java-common (0.72) ... Removing libasound2:amd64 (1.2.4-1.1) ... Removing libasound2-data (1.2.4-1.1) ... Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Removing libavahi-client3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common-data:amd64 (0.8-5+deb11u2) ... Removing libbio-variation-perl (1.7.5-2) ... Removing libbio-db-ncbihelper-perl (1.7.6-4) ... Removing libbio-asn1-entrezgene-perl (1.730-2) ... Removing libbio-cluster-perl (1.7.3-5) ... Removing libbio-perl-perl (1.7.7-2) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libcache-cache-perl (1.08-2) ... Removing libcgi-pm-perl (4.51-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Removing libruby2.7:amd64 (2.7.4-1+deb11u1) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing libxml-twig-perl (1:3.52-1) ... Removing libxml-parser-perl:amd64 (2.46-2) ... Removing libwww-perl (6.52-1) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing liberror-perl (0.17029-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libfile-listing-perl (6.14-1) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.75-1+b1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libhttp-cookies-perl (6.10-1) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libio-socket-ssl-perl (2.069-1) ... Removing libio-string-perl (1.08-3.1) ... Removing libipc-sharelite-perl (0.17-4+b5) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libnet-http-perl (6.20-1) ... Removing libnet-ssleay-perl (1.88-3+b1) ... Removing libpcsclite1:amd64 (1.9.1-1) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libxml-writer-perl (0.900-1) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing netbase (6.3) ... Removing perl-openssl-defaults:amd64 (5) ... Removing ruby-minitest (5.13.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.3.9-1) ... Removing ruby-power-assert (1.1.7-2) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ca-certificates-java (20190909+deb11u1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libhttp-message-perl (6.28-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libhttp-date-perl (6.05-1) ... Removing libio-html-perl (1.004-2) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libnss3:amd64 (2:3.61-1+deb11u3) ... Removing libnspr4:amd64 (2:4.29-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libtimedate-perl (2.3300-2) ... Removing liburi-perl (5.08-1) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... 1m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-ncbihelper-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl:amd64', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip', 'gbrowse-calign'] 1m59.7s INFO: Running scripts post_remove 1m59.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_remove_exceptions'] 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_remove_exceptions'] 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-ncbihelper-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl:amd64', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip'] 2m1.9s DUMP: dpkg: warning: ignoring request to remove alsa-topology-conf which isn't installed dpkg: warning: ignoring request to remove alsa-ucm-conf which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed (Reading database ... 7154 files and directories currently installed.) Purging configuration files for apache2 (2.4.59-1~deb11u1) ... dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909+deb11u1) ... dpkg: warning: while removing ca-certificates-java, directory '/etc/ssl/certs' not empty so not removed dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-7) ... Purging configuration files for dbus (1.12.28-0+deb11u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove default-jdk-headless which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-4.2) ... Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-noto-mono (20201225-1) ... dpkg: warning: while removing fonts-noto-mono, directory '/usr/share/fonts/truetype/noto' not empty so not removed Purging configuration files for fonts-urw-base35 (20200910-1) ... dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/type1/urw-base35' not empty so not removed dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/opentype/urw-base35' not empty so not removed dpkg: warning: ignoring request to remove fsa which isn't installed Purging configuration files for gawk (1:5.1.0-1) ... Purging configuration files for gbrowse (2.56+dfsg-8) ... dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.42.2-5) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for hyphy-common (2.5.28+dfsg-3) ... Purging configuration files for hyphy-pt (2.5.28+dfsg-3) ... Purging configuration files for ibverbs-providers:amd64 (33.2-1) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for java-common (0.72) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove lagan which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.11-4) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libasync-interrupt-perl which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libberkeleydb-perl which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-cluster-perl which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-biofetch-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-gff-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-ncbihelper-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-seqfeature-perl which isn't installed dpkg: warning: ignoring request to remove libbio-eutilities-perl which isn't installed dpkg: warning: ignoring request to remove libbio-featureio-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-scf-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-alignment-clustalw-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-remoteblast-perl which isn't installed dpkg: warning: ignoring request to remove libbio-variation-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcbor0 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libev-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-bin which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi0ldbl which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-sort-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd-svg-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed dpkg: warning: ignoring request to remove libguard-perl which isn't installed Purging configuration files for libgvc6 (2.42.2-5) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libjson-xs-perl which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.57+dfsg-3+deb11u1) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-xs-perl which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.39-3+deb11u1) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libreadonly-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-xs-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libruby2.7 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libset-object-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstaden-read14 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-quote-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-requiresinternet-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtypes-serialiser-perl which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-1) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed Purging configuration files for lynx (2.9.0dev.6-3~deb11u1) ... Purging configuration files for lynx-common (2.9.0dev.6-3~deb11u1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.69) ... dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.5.23-0+deb11u1) ... Purging configuration files for med-config (3.7) ... Purging configuration files for media-types (4.0.0) ... Purging configuration files for menu (2.1.48) ... dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.7) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (6.3) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove openjdk-11-jdk-headless which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... Purging configuration files for openmpi-bin (4.1.0-10) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:8.4p1-5+deb11u3) ... dpkg: warning: while removing openssh-client, directory '/usr/lib/systemd' not empty so not removed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... dpkg: warning: while removing openssl, directory '/etc/ssl/private' not empty so not removed dpkg: warning: ignoring request to remove pal2nal which isn't installed dpkg: warning: ignoring request to remove paml which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... Purging configuration files for perl-doc (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove pftools which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.10-1) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.4.0-4) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed Purging configuration files for procps (2:3.3.17-5) ... dpkg: warning: ignoring request to remove proda which isn't installed Purging configuration files for psmisc (23.4-2) ... dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.7 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed Purging configuration files for ssl-cert (1.1.0+nmu1) ... dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 2m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'gbrowse', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libasync-interrupt-perl', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libberkeleydb-perl:amd64', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-ncbihelper-perl', 'libbio-db-seqfeature-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-scf-perl:amd64', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcommon-sense-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libev-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd-svg-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguard-perl', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libjson-xs-perl', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libstring-approx-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libtypes-serialiser-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'procps', 'proda', 'psmisc', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 'sqlite3', 'ssl-cert', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip'] 2m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--purge', 'gbrowse-calign'] 2m1.9s DUMP: dpkg: warning: ignoring request to remove gbrowse-calign which isn't installed 2m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--purge', 'gbrowse-calign'] 2m1.9s INFO: Running scripts post_purge 2m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_purge_exceptions'] 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_purge_exceptions'] 2m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--purge', '--pending'] 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--purge', '--pending'] 2m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--remove', '--pending'] 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg', '--remove', '--pending'] 2m2.0s INFO: Running scripts post_test 2m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_test_exceptions'] 2m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'tmp/scripts/post_test_exceptions'] 2m2.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 2m2.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 2m2.9s DEBUG: No broken symlinks as far as we can find. 2m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-divert', '--list'] 2m2.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'dpkg-divert', '--list'] 2m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'clean'] 2m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpevcufdy2', 'apt-get', 'clean'] 2m3.1s DEBUG: Recording chroot state 2m3.5s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-noto-mono, fonts-urw-base35, fonts-liberation, fonts-dejavu-core, poppler-data, fonts-lato, fonts-droid-fallback /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/urw-base35/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-noto-mono, fonts-liberation, fonts-dejavu-core, fonts-lato, fonts-droid-fallback /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/type1/ owned by: fonts-urw-base35 /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/type1/urw-base35/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned 2m3.5s INFO: PASS: Installation and purging test. 2m4.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/shm'] 2m4.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/shm'] 2m4.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/console'] 2m4.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/console'] 2m4.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/ptmx'] 2m4.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/ptmx'] 2m4.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/pts'] 2m4.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/dev/pts'] 2m4.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/proc'] 2m4.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpevcufdy2/proc'] 2m4.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 2m4.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpevcufdy2'] 2m4.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpevcufdy2 2m4.2s INFO: PASS: All tests. 2m4.2s INFO: piuparts run ends. ret=0 End: 2024-08-18 07:57:10 GMT