Start: 2024-07-27 05:29:51 GMT Package: gromacs-data Source: gromacs Version: 2020.6-2 Installed-Size: 216435 Maintainer: Debichem Team Architecture: all Replaces: gromacs-doc Depends: libjs-mathjax Recommends: gromacs Conflicts: gromacs-doc Description: GROMACS molecular dynamics sim, data and documentation Multi-Arch: foreign Homepage: http://www.gromacs.org/ Description-md5: 03ddef80c5d959a0289c77ec8b295eee Tag: field::biology, field::chemistry, role::app-data, role::documentation Section: science Priority: optional Filename: pool/main/g/gromacs/gromacs-data_2020.6-2_all.deb Size: 35899452 MD5sum: ea436007459c729b81d2899fc3a33010 SHA256: 56e6ee503cd17060caee9a22a29f06ac2b1ee3ef739aba9bc5111aa3af19693f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt gromacs-data=2020.6-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt gromacs-data=2020.6-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-31-amd64 #1 SMP Debian 5.10.221-1 (2024-07-14) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp7xcn7nu5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp7xcn7nu5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp7xcn7nu5/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.2s DUMP: e0568dca630aa17b9cacee75afdb778e - 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'clean'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'clean'] 0m3.7s DEBUG: Recording chroot state 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-divert', '--list'] 0m4.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-divert', '--list'] 0m4.2s INFO: Running scripts is_testable 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: apt-cache does not know about any of the requested packages 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_test_root_password'] 0m4.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_test_root_password'] 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m4.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m5.1s DEBUG: No broken symlinks as far as we can find. 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m5.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m6.0s DEBUG: No broken symlinks as far as we can find. 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-cache', 'policy'] 0m6.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.10,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-cache', 'policy'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-cache', 'policy', 'gromacs-data'] 0m6.9s DUMP: gromacs-data: Installed: (none) Candidate: 2020.6-2 Version table: 2020.6-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-cache', 'policy', 'gromacs-data'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', '-y', 'install', 'gromacs-data=2020.6-2'] 0m21.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: cpp cpp-10 fonts-mathjax gromacs libblas3 libbsd0 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libgromacs5 libhwloc-plugins libhwloc15 libicu67 libisl23 libjs-mathjax liblapack3 libmd0 libmpc3 libmpfr6 libpciaccess0 libquadmath0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 sse4.2-support Suggested packages: cpp-doc gcc-10-locales pymol libfftw3-bin libfftw3-dev libhwloc-contrib-plugins fonts-mathjax-extras fonts-stix libjs-mathjax-doc pciutils opencl-icd The following NEW packages will be installed: cpp cpp-10 fonts-mathjax gromacs gromacs-data libblas3 libbsd0 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libgromacs5 libhwloc-plugins libhwloc15 libicu67 libisl23 libjs-mathjax liblapack3 libmd0 libmpc3 libmpfr6 libpciaccess0 libquadmath0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 sse4.2-support 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 82.6 MB of archives. After this operation, 390 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 sse4.2-support amd64 6 [8456 B] Get:2 http://deb.debian.org/debian bullseye/main amd64 libisl23 amd64 0.23-1 [676 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libmpc3 amd64 1.2.0-1 [45.0 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 cpp-10 amd64 10.2.1-6 [8528 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 cpp amd64 4:10.2.1-1 [19.7 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 gromacs-data all 2020.6-2 [35.9 MB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libgromacs5 amd64 2020.6-2 [11.5 MB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 gromacs amd64 2020.6-2 [137 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.239.06-1 [27.5 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.6 MB in 4s (21.3 MB/s) Selecting previously unselected package sse4.2-support. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../00-sse4.2-support_6_amd64.deb ... Unpacking sse4.2-support (6) ... Selecting previously unselected package libisl23:amd64. Preparing to unpack .../01-libisl23_0.23-1_amd64.deb ... Unpacking libisl23:amd64 (0.23-1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../02-libmpfr6_4.1.0-3_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.0-3) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../03-libmpc3_1.2.0-1_amd64.deb ... Unpacking libmpc3:amd64 (1.2.0-1) ... Selecting previously unselected package cpp-10. Preparing to unpack .../04-cpp-10_10.2.1-6_amd64.deb ... Unpacking cpp-10 (10.2.1-6) ... Selecting previously unselected package cpp. Preparing to unpack .../05-cpp_4%3a10.2.1-1_amd64.deb ... Unpacking cpp (4:10.2.1-1) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../06-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../07-libjs-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking libjs-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package gromacs-data. Preparing to unpack .../08-gromacs-data_2020.6-2_all.deb ... Unpacking gromacs-data (2020.6-2) ... Selecting previously unselected package libblas3:amd64. 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Unpacking libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libmpc3:amd64 (1.2.0-1) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up sse4.2-support (6) ... Setting up libisl23:amd64 (0.23-1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up cpp-10 (10.2.1-6) ... Setting up gromacs-data (2020.6-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up cpp (4:10.2.1-1) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libgromacs5:amd64 (2020.6-2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up gromacs (2020.6-2) ... Setting up libxnvctrl0:amd64 (470.239.06-1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', '-y', 'install', 'gromacs-data=2020.6-2'] 0m21.7s INFO: Running scripts post_install 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_install_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_install_exceptions'] 0m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m22.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m25.8s DEBUG: No broken symlinks as far as we can find. 0m25.9s INFO: /bin converted to /usr/bin by /usr merge 0m25.9s INFO: /lib converted to /usr/lib by /usr merge 0m25.9s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m25.9s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m25.9s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m25.9s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m25.9s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m25.9s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m25.9s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m25.9s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m25.9s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m25.9s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m25.9s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m25.9s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m25.9s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m25.9s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m25.9s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m25.9s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m25.9s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m25.9s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m25.9s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m25.9s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m25.9s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m25.9s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m25.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m25.9s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m25.9s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m25.9s INFO: /sbin converted to /usr/sbin by /usr merge 0m28.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', '-ac', '--ignore-obsolete'] 0m30.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', '-ac', '--ignore-obsolete'] 0m30.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.7s DUMP: 0.15.6 0m30.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m30.7s INFO: Running adequate version 0.15.6 now. 0m30.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'gromacs-data'] 0m31.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'gromacs-data'] 0m31.4s INFO: Running scripts pre_remove 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_exceptions'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/pre_remove_exceptions'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.8s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed cpp cpp 4:10.2.1-1 install ok installed cpp-10 cpp-10 10.2.1-6 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gromacs gromacs 2020.6-2 install ok installed gromacs-data gromacs-data 2020.6-2 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.8-2 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgromacs5:amd64 libgromacs5 2020.6-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.4.1+dfsg-1 install ok installed libhwloc15:amd64 libhwloc15 2.4.1+dfsg-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libisl23:amd64 libisl23 0.23-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpc3:amd64 libmpc3 1.2.0-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.239.06-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sse4.2-support sse4.2-support 6 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'remove', 'cpp', 'cpp-10', 'fonts-mathjax', 'gromacs', 'libblas3:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu67:amd64', 'libisl23:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support', 'gromacs-data'] 0m40.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: cpp cpp-10 fonts-mathjax gromacs gromacs-data libblas3 libbsd0 libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libgromacs5 libhwloc-plugins libhwloc15 libicu67 libisl23 libjs-mathjax liblapack3 libmd0 libmpc3 libmpfr6 libpciaccess0 libquadmath0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 ocl-icd-libopencl1 sse4.2-support 0 upgraded, 0 newly installed, 33 to remove and 0 not upgraded. After this operation, 390 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31303 files and directories currently installed.) Removing cpp (4:10.2.1-1) ... Removing cpp-10 (10.2.1-6) ... Removing gromacs (2020.6-2) ... Removing gromacs-data (2020.6-2) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing libgromacs5:amd64 (2020.6-2) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Removing libxnvctrl0:amd64 (470.239.06-1) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libhwloc15:amd64 (2.4.1+dfsg-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libisl23:amd64 (0.23-1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libmpc3:amd64 (1.2.0-1) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-2) ... Removing sse4.2-support (6) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'remove', 'cpp', 'cpp-10', 'fonts-mathjax', 'gromacs', 'libblas3:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu67:amd64', 'libisl23:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support', 'gromacs-data'] 0m40.5s INFO: Running scripts post_remove 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_remove_exceptions'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_remove_exceptions'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--purge', 'cpp', 'cpp-10', 'fonts-mathjax', 'gromacs', 'libblas3:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu67:amd64', 'libisl23:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support'] 0m40.6s DUMP: dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-10 which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove gromacs which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs5 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed (Reading database ... 6674 files and directories currently installed.) Purging configuration files for sse4.2-support (6) ... 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--purge', 'cpp', 'cpp-10', 'fonts-mathjax', 'gromacs', 'libblas3:amd64', 'libbsd0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs5:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libicu67:amd64', 'libisl23:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'ocl-icd-libopencl1:amd64', 'sse4.2-support'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--purge', 'gromacs-data'] 0m40.6s DUMP: dpkg: warning: ignoring request to remove gromacs-data which isn't installed 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--purge', 'gromacs-data'] 0m40.6s INFO: Running scripts post_purge 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_purge_exceptions'] 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_purge_exceptions'] 0m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--purge', '--pending'] 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--purge', '--pending'] 0m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--remove', '--pending'] 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg', '--remove', '--pending'] 0m40.7s INFO: Running scripts post_test 0m40.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_test_exceptions'] 0m40.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'tmp/scripts/post_test_exceptions'] 0m40.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m41.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m41.6s DEBUG: No broken symlinks as far as we can find. 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-divert', '--list'] 0m41.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'dpkg-divert', '--list'] 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'clean'] 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5', 'apt-get', 'clean'] 0m41.7s DEBUG: Recording chroot state 0m42.3s INFO: PASS: Installation and purging test. 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/shm'] 0m42.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/shm'] 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/console'] 0m42.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/console'] 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/ptmx'] 0m42.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/ptmx'] 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/pts'] 0m42.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/dev/pts'] 0m42.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/proc'] 0m42.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5/proc'] 0m42.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m42.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7xcn7nu5'] 0m42.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp7xcn7nu5 0m42.8s INFO: PASS: All tests. 0m42.8s INFO: piuparts run ends. ret=0 End: 2024-07-27 05:30:35 GMT