Start: 2024-07-04 20:57:00 GMT Package: libbio-db-refseq-perl Version: 1.7.4-1 Installed-Size: 23 Maintainer: Debian Med team Architecture: all Replaces: libbio-perl-perl (<< 1.7.3) Depends: perl:any, libhttp-message-perl, libwww-perl, libbio-perl-perl Breaks: libbio-perl-perl (<< 1.7.3) Description: Database object interface for RefSeq retrieval Homepage: https://metacpan.org/release/Bio-DB-RefSeq Description-md5: 64ecf0da6799e8766c1bb90700f3380f Section: perl Priority: optional Filename: pool/main/libb/libbio-db-refseq-perl/libbio-db-refseq-perl_1.7.4-1_all.deb Size: 7548 MD5sum: fa85808b3e6a925e77069c2aecd7d0be SHA256: f356e91a6a46f3612925b25e37cac62f7adb4718d8c0b0151015e01a49cffd2b Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt libbio-db-refseq-perl=1.7.4-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt libbio-db-refseq-perl=1.7.4-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-30-amd64 #1 SMP Debian 5.10.218-1 (2024-06-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph08sqwz1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph08sqwz1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph08sqwz1/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'update'] 0m4.1s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8067 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6236 kB] Fetched 14.4 MB in 3s (5041 kB/s) Reading package lists... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files bsdutils libblkid1 libc-bin libc6 libgnutls30 libmount1 libsmartcols1 libsystemd0 libudev1 libuuid1 mount util-linux 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7730 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 base-files amd64 11.1+deb11u10 [70.2 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 bsdutils amd64 1:2.36.1-8+deb11u2 [149 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 util-linux amd64 2.36.1-8+deb11u2 [1142 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libc6 amd64 2.31-13+deb11u10 [2825 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libc-bin amd64 2.31-13+deb11u10 [827 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libsystemd0 amd64 247.3-7+deb11u5 [376 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 mount amd64 2.36.1-8+deb11u2 [186 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libblkid1 amd64 2.36.1-8+deb11u2 [194 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.7.1-5+deb11u5 [1340 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libmount1 amd64 2.36.1-8+deb11u2 [212 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libsmartcols1 amd64 2.36.1-8+deb11u2 [158 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libudev1 amd64 247.3-7+deb11u5 [169 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libuuid1 amd64 2.36.1-8+deb11u2 [83.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7730 kB in 0s (57.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../base-files_11.1+deb11u10_amd64.deb ... Unpacking base-files (11.1+deb11u10) over (11.1+deb11u9) ... Setting up base-files (11.1+deb11u10) ... Installing new version of config file /etc/debian_version ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-8+deb11u2_amd64.deb ... Unpacking util-linux (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up util-linux (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u10_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u10) over (2.31-13+deb11u8) ... Setting up libc6:amd64 (2.31-13+deb11u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u10_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u10) over (2.31-13+deb11u8) ... Setting up libc-bin (2.31-13+deb11u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libsystemd0_247.3-7+deb11u5_amd64.deb ... Unpacking libsystemd0:amd64 (247.3-7+deb11u5) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (247.3-7+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-8+deb11u2_amd64.deb ... Unpacking mount (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Preparing to unpack .../libblkid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libblkid1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u5) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libudev1_247.3-7+deb11u5_amd64.deb ... Unpacking libudev1:amd64 (247.3-7+deb11u5) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (247.3-7+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6670 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.36.1-8+deb11u2) ... Setting up mount (2.36.1-8+deb11u2) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.6s DUMP: e0568dca630aa17b9cacee75afdb778e - 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.6s INFO: Running scripts post_setup 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_minimize'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_minimize'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_zz_backports'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_setup_zz_backports'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'clean'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'clean'] 0m8.7s DEBUG: Recording chroot state 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-divert', '--list'] 0m9.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-divert', '--list'] 0m9.3s INFO: Running scripts is_testable 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/is_testable_uninstallable'] 0m9.3s INFO: apt-cache does not know about any of the requested packages 0m9.3s INFO: Running scripts pre_test 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_test_exceptions'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_test_root_password'] 0m9.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_test_root_password'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 0m10.5s DEBUG: No broken symlinks as far as we can find. 0m10.5s INFO: Running scripts pre_install 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_database-server'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_database-server'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_exceptions'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_extras'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_extras'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 0m11.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 0m11.9s DEBUG: No broken symlinks as far as we can find. 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-cache', 'policy'] 0m12.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.10,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-cache', 'policy'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-cache', 'policy', 'libbio-db-refseq-perl'] 0m12.7s DUMP: libbio-db-refseq-perl: Installed: (none) Candidate: 1.7.4-1 Version table: 1.7.4-1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-cache', 'policy', 'libbio-db-refseq-perl'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', '-y', 'install', 'libbio-db-refseq-perl=1.7.4-1'] 1m22.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2-bin bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fonts-urw-base35 fsa gawk ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign lagan libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-ncbihelper-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery liblab-gamut1 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpdec3 libmpfr6 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-11-jdk-headless openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.32 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons proda publicsuffix python3 python3-minimal python3.9 python3.9-minimal rake raxml readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom groff-base gmap fasta3 trnascan-se blends-doc bowtie-examples bzip2-doc clustalx seaview default-dbus-session-bus | dbus-session-bus default-jre emboss-doc emboss-test embassy fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc ghostscript-x gsfonts graphviz-doc hmmer-doc apache2 | lighttpd | httpd libasound2-plugins alsa-utils libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n gpm libhtml-element-extended-perl libhwloc-contrib-plugins liblcms2-utils libcrypt-ssleay-perl uuid libscalar-number-perl pciutils pcscd libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libmime-lite-perl libnet-jabber-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl menu-l10n gksu | kde-cli-tools | ktsuss mustang-testdata gnuplot opencl-icd openjdk-11-demo openjdk-11-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl man-browser phylip-doc blast2 poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils binfmt-support readline-doc ri ruby-dev bundler cwltool boxshade t-coffee-examples pymol rasmol wise-doc Recommended packages: blast2 The following NEW packages will be installed: alsa-topology-conf alsa-ucm-conf amap-align apache2-bin bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fonts-urw-base35 fsa gawk ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign lagan libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery liblab-gamut1 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpdec3 libmpfr6 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-11-jdk-headless openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.32 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons proda publicsuffix python3 python3-minimal python3.9 python3.9-minimal rake raxml readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip 0 upgraded, 443 newly installed, 0 to remove and 0 not upgraded. Need to get 379 MB of archives. After this operation, 1502 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libapparmor1 amd64 2.13.6-10 [99.3 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 dbus amd64 1.12.28-0+deb11u1 [244 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 gawk amd64 1:5.1.0-1 [605 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 poppler-data all 0.4.10-1 [1602 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libfido2-1 amd64 1.6.0-2 [53.3 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 openssh-client amd64 1:8.4p1-5+deb11u3 [932 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 xz-utils amd64 5.2.5-2.1~deb11u1 [220 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 alsa-topology-conf all 1.2.4-1 [12.8 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 alsa-ucm-conf all 1.2.4-2 [28.1 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-2 [132 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libapr1 amd64 1.7.0-6+deb11u2 [106 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libaprutil1 amd64 1.6.1-5+deb11u1 [92.3 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-5+deb11u1 [19.0 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libaprutil1-ldap amd64 1.6.1-5+deb11u1 [17.2 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2+deb11u1 [156 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u12 [347 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libjansson4 amd64 2.13.1-1.1 [39.7 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 liblua5.3-0 amd64 5.3.3-1.1+deb11u1 [123 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 apache2-bin amd64 2.4.59-1~deb11u1 [1448 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 bedtools amd64 2.30.0+dfsg-1 [663 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-2 [2607 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:75 http://deb.debian.org/debian bullseye/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libtest-deep-perl all 1.130-1 [49.3 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libtest-differences-perl all 0.67-1 [18.7 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libsub-uplevel-perl all 0.2800-1.1 [16.5 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libtest-most-perl all 0.37-1 [24.9 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 bioperl all 1.7.7-2 [246 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libio-pty-perl amd64 1:1.15-2 [37.0 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libipc-run-perl all 20200505.0-1 [102 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libfile-sort-perl all 1.01-2 [21.2 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-run-perl all 1.7.3-6 [606 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libbio-tools-run-alignment-clustalw-perl all 1.7.4-2 [24.5 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libfile-slurp-tiny-perl all 0.004-1 [7288 B] Get:94 http://deb.debian.org/debian bullseye/main amd64 libtree-dagnode-perl all 1.32-1 [61.7 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:109 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libxml-parser-perl amd64 2.46-2 [206 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libxml-perl all 0.08-3.1 [93.9 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:119 http://deb.debian.org/debian bullseye/main amd64 libxml-dom-perl all 1.46-1 [154 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libxml-dom-xpath-perl all 0.14-3 [9066 B] Get:122 http://deb.debian.org/debian bullseye/main amd64 libbio-featureio-perl all 1.6.905-2 [53.2 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libbio-asn1-entrezgene-perl all 1.730-2 [48.6 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libipc-sharelite-perl amd64 0.17-4+b5 [24.5 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libcgi-pm-perl all 4.51-1 [224 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libxml-twig-perl all 1:3.52-1 [181 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libbio-db-ncbihelper-perl all 1.7.6-4 [58.1 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 libxml-writer-perl all 0.900-1 [29.9 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libbio-variation-perl all 1.7.5-2 [72.5 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libbio-cluster-perl all 1.7.3-5 [53.2 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libtest-requiresinternet-perl all 0.05-3 [6768 B] Get:134 http://deb.debian.org/debian bullseye/main amd64 libtext-csv-perl all 2.00-1 [105 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libbio-eutilities-perl all 1.77-1 [124 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libbio-tools-run-remoteblast-perl all 1.7.3-3 [17.5 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 fonts-liberation all 1:1.07.4-11 [828 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u4 [1377 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.23+9-1~deb11u1 [38.2 MB] Get:165 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jdk-headless amd64 11.0.23+9-1~deb11u1 [73.6 MB] Get:167 http://deb.debian.org/debian bullseye/main amd64 default-jdk-headless amd64 2:1.11-72 [1100 B] Get:168 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u12 [344 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 hyphy-common all 2.5.28+dfsg-3 [566 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 hyphy-pt amd64 2.5.28+dfsg-3 [1656 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 bioperl-run all 1.7.3-6 [42.2 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 menu amd64 2.1.48 [375 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 blends-common all 0.7.2 [24.7 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 bowtie amd64 1.3.0+dfsg1-1 [1638 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 libargtable2-0 amd64 13-1.1 [17.9 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 clustalo amd64 1.2.4-7 [260 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 dialign amd64 2.2.1-11 [139 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 dialign-tx-data all 1.0.2-13 [871 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 dialign-tx amd64 1.0.2-13 [82.2 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 mysql-common all 5.8+1.0.7 [7464 B] Get:195 http://deb.debian.org/debian bullseye/main amd64 mariadb-common all 1:10.5.23-0+deb11u1 [37.2 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 libmariadb3 amd64 1:10.5.23-0+deb11u1 [176 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.15-0+deb11u1 [182 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 emboss-lib amd64 6.6.0+dfsg-9 [2866 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 emboss-data all 6.6.0+dfsg-9 [61.1 MB] Get:200 http://deb.debian.org/debian bullseye/main amd64 emboss amd64 6.6.0+dfsg-9 [1073 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 exonerate amd64 2.4.0-5 [1616 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 fonts-noto-mono all 20201225-1 [402 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 mummer amd64 3.23+dfsg-7 [664 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 fsa amd64 1.15.9+dfsg-6 [700 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 libgs9-common all 9.53.3~dfsg-7+deb11u7 [735 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 libidn11 amd64 1.33-3 [116 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 libjbig2dec0 amd64 0.19-2 [67.2 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 libgs9 amd64 9.53.3~dfsg-7+deb11u7 [2244 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 ghostscript amd64 9.53.3~dfsg-7+deb11u7 [98.5 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 libcdt5 amd64 2.42.2-5 [62.2 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 libcgraph6 amd64 2.42.2-5 [85.5 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 libpathplan4 amd64 2.42.2-5 [64.3 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 libgvc6 amd64 2.42.2-5 [695 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 libgvpr2 amd64 2.42.2-5 [212 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 liblab-gamut1 amd64 2.42.2-5 [221 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 graphviz amd64 2.42.2-5 [632 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 hmmer amd64 3.3.2+dfsg-1 [1153 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 infernal amd64 1.1.4-1 [5523 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 javascript-common all 11+nmu1 [6260 B] Get:251 http://deb.debian.org/debian bullseye/main amd64 kalign amd64 1:3.3-1+b3 [137 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 lagan amd64 2.0-6 [179 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 libace-perl amd64 1.92-10 [284 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-xs-perl amd64 0.04-6+b1 [12.0 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 libdevel-symdump-perl all 2.18-4 [17.5 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 libapache2-mod-perl2 amd64 2.0.11-4 [887 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 libdbi-perl amd64 1.643-3+b1 [780 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 libapache2-reload-perl all 0.13-3 [17.2 kB] Get:261 http://deb.debian.org/debian bullseye/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 libtype-tiny-perl all 1.012001-2 [351 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 libarray-compare-perl all 3.0.8-1 [14.9 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 libauthen-sasl-perl all 2.1600-1.1 [45.4 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:278 http://deb.debian.org/debian bullseye/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 libbio-db-refseq-perl all 1.7.4-1 [7548 B] Get:281 http://deb.debian.org/debian bullseye/main amd64 libcarp-clan-perl all 6.08-1 [15.6 kB] Get:282 http://deb.debian.org/debian bullseye/main amd64 libbit-vector-perl amd64 7.4-1+b7 [146 kB] Get:283 http://deb.debian.org/debian bullseye/main amd64 libbsd-resource-perl amd64 1.2911-1+b5 [33.9 kB] Get:284 http://deb.debian.org/debian bullseye/main amd64 libfcgi0ldbl amd64 2.4.2-2 [26.1 kB] Get:285 http://deb.debian.org/debian bullseye/main amd64 libfcgi-perl amd64 0.79+ds-2 [27.6 kB] Get:286 http://deb.debian.org/debian bullseye/main amd64 libcgi-fast-perl all 1:2.15-1 [12.1 kB] Get:287 http://deb.debian.org/debian bullseye/main amd64 libclass-inspector-perl all 1.36-1 [19.6 kB] Get:288 http://deb.debian.org/debian bullseye/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:289 http://deb.debian.org/debian bullseye/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:290 http://deb.debian.org/debian bullseye/main amd64 libconvert-binary-c-perl amd64 0.84-1 [269 kB] Get:291 http://deb.debian.org/debian bullseye/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:292 http://deb.debian.org/debian bullseye/main amd64 libcrypt-rc4-perl all 2.02-3 [7704 B] Get:293 http://deb.debian.org/debian bullseye/main amd64 libdata-dump-perl all 1.23-1.1 [27.6 kB] Get:294 http://deb.debian.org/debian bullseye/main amd64 libdate-calc-perl all 6.4-1.1 [191 kB] Get:295 http://deb.debian.org/debian bullseye/main amd64 libdate-calc-xs-perl amd64 6.4-1+b6 [55.0 kB] Get:296 http://deb.debian.org/debian bullseye/main amd64 libdate-manip-perl all 6.83-1 [931 kB] Get:297 http://deb.debian.org/debian bullseye/main amd64 libdbd-mysql-perl amd64 4.050-3+b1 [122 kB] Get:298 http://deb.debian.org/debian bullseye/main amd64 libdbd-pg-perl amd64 3.14.2-1+b1 [215 kB] Get:299 http://deb.debian.org/debian bullseye/main amd64 libdbd-sqlite3-perl amd64 1.66-1+b1 [179 kB] Get:300 http://deb.debian.org/debian bullseye/main amd64 libdigest-perl-md5-perl all 1.9-1.1 [11.2 kB] Get:301 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:302 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:303 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:304 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:305 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:306 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get:307 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:308 http://deb.debian.org/debian bullseye/main amd64 libfcgi-bin amd64 2.4.2-2 [12.9 kB] Get:309 http://deb.debian.org/debian bullseye/main amd64 libfile-slurp-perl all 9999.32-1 [28.1 kB] Get:310 http://deb.debian.org/debian bullseye/main amd64 libfont-afm-perl all 1.20-3 [14.0 kB] Get:311 http://deb.debian.org/debian bullseye/main amd64 libfreezethaw-perl all 0.5001-2.1 [16.9 kB] Get:312 http://deb.debian.org/debian bullseye/main amd64 libgd-perl amd64 2.73-1+b1 [141 kB] Get:313 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:314 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:315 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-data all 2.66.8-1+deb11u4 [1178 kB] Get:316 http://deb.debian.org/debian bullseye/main amd64 libgpm2 amd64 1.20.7-8 [35.6 kB] Get:317 http://deb.debian.org/debian bullseye/main amd64 libheap-perl all 0.80-3 [34.2 kB] Get:318 http://deb.debian.org/debian bullseye/main amd64 libset-object-perl amd64 1.41-1 [40.1 kB] Get:319 http://deb.debian.org/debian bullseye/main amd64 libgraph-perl all 1:0.9716-2 [109 kB] Get:320 http://deb.debian.org/debian bullseye/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:321 http://deb.debian.org/debian bullseye/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:322 http://deb.debian.org/debian bullseye/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get:323 http://deb.debian.org/debian bullseye/main amd64 libgts-bin amd64 0.7.6+darcs121130-4+b1 [50.3 kB] Get:324 http://deb.debian.org/debian bullseye/main amd64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:325 http://deb.debian.org/debian bullseye/main amd64 libhtml-format-perl all 2.12-1.1 [43.8 kB] Get:326 http://deb.debian.org/debian bullseye/main amd64 libhtml-tableextract-perl all 2.15-1.1 [30.4 kB] Get:327 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:328 http://deb.debian.org/debian bullseye/main amd64 libhttp-daemon-perl all 6.12-1+deb11u1 [23.4 kB] Get:329 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:330 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.239.06-1 [27.5 kB] Get:331 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:332 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:333 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get:334 http://deb.debian.org/debian bullseye/main amd64 libio-sessiondata-perl all 1.03-1.1 [5984 B] Get:335 http://deb.debian.org/debian bullseye/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:336 http://deb.debian.org/debian bullseye/main amd64 libjcode-pm-perl amd64 2.06-1+b1 [28.4 kB] Get:337 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:338 http://deb.debian.org/debian bullseye/main amd64 libldap-common all 2.4.57+dfsg-3+deb11u1 [95.8 kB] Get:339 http://deb.debian.org/debian bullseye/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:340 http://deb.debian.org/debian bullseye/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:341 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:342 http://deb.debian.org/debian bullseye/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:343 http://deb.debian.org/debian bullseye/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:344 http://deb.debian.org/debian bullseye/main amd64 libmath-derivative-perl all 1.01-1.1 [9092 B] Get:345 http://deb.debian.org/debian bullseye/main amd64 libmath-spline-perl all 0.02-2 [7644 B] Get:346 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:347 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:348 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:349 http://deb.debian.org/debian bullseye/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:350 http://deb.debian.org/debian bullseye/main amd64 libmldbm-perl all 2.05-2.1 [18.6 kB] Get:351 http://deb.debian.org/debian bullseye/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:352 http://deb.debian.org/debian bullseye/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:353 http://deb.debian.org/debian bullseye/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:354 http://deb.debian.org/debian bullseye/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:355 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:356 http://deb.debian.org/debian bullseye/main amd64 libole-storage-lite-perl all 0.20-1 [23.9 kB] Get:357 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1+deb11u1 [553 kB] Get:358 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get:359 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get:360 http://deb.debian.org/debian bullseye/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b9 [37.9 kB] Get:361 http://deb.debian.org/debian bullseye/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b9 [28.8 kB] Get:362 http://deb.debian.org/debian bullseye/main amd64 libpackage-stash-xs-perl amd64 0.29-1+b2 [20.2 kB] Get:363 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:364 http://deb.debian.org/debian bullseye/main amd64 libpostscript-perl all 0.06-3.1 [26.0 kB] Get:365 http://deb.debian.org/debian bullseye/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:366 http://deb.debian.org/debian bullseye/main amd64 libref-util-perl all 0.204-1 [17.1 kB] Get:367 http://deb.debian.org/debian bullseye/main amd64 libref-util-xs-perl amd64 0.117-1+b3 [13.9 kB] Get:368 http://deb.debian.org/debian bullseye/main amd64 rubygems-integration all 1.18 [6704 B] Get:369 http://deb.debian.org/debian bullseye/main amd64 ruby2.7 amd64 2.7.4-1+deb11u1 [747 kB] Get:370 http://deb.debian.org/debian bullseye/main amd64 ruby-rubygems all 3.2.5-2 [281 kB] Get:371 http://deb.debian.org/debian bullseye/main amd64 ruby amd64 1:2.7+2 [11.7 kB] Get:372 http://deb.debian.org/debian bullseye/main amd64 rake all 13.0.3-1 [84.7 kB] Get:373 http://deb.debian.org/debian bullseye/main amd64 ruby-minitest all 5.13.0-1 [57.3 kB] Get:374 http://deb.debian.org/debian bullseye/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:375 http://deb.debian.org/debian bullseye/main amd64 ruby-power-assert all 1.1.7-2 [11.5 kB] Get:376 http://deb.debian.org/debian bullseye/main amd64 ruby-test-unit all 3.3.9-1 [86.1 kB] Get:377 http://deb.debian.org/debian bullseye/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:378 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:379 http://deb.debian.org/debian bullseye/main amd64 libruby2.7 amd64 2.7.4-1+deb11u1 [4202 kB] Get:380 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules amd64 2.1.27+dfsg-2.1+deb11u1 [104 kB] Get:381 http://deb.debian.org/debian bullseye/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:382 http://deb.debian.org/debian bullseye/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:383 http://deb.debian.org/debian bullseye/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:384 http://deb.debian.org/debian bullseye/main amd64 libsort-naturally-perl all 1.03-2 [13.5 kB] Get:385 http://deb.debian.org/debian bullseye/main amd64 libspreadsheet-writeexcel-perl all 2.40-1.1 [538 kB] Get:386 http://deb.debian.org/debian bullseye/main amd64 libunicode-map-perl amd64 0.112-12+b3 [145 kB] Get:387 http://deb.debian.org/debian bullseye/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1.1+deb11u1 [150 kB] Get:388 http://deb.debian.org/debian bullseye/main amd64 libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get:389 http://deb.debian.org/debian bullseye/main amd64 libsvg-perl all 2.85-1 [64.4 kB] Get:390 http://deb.debian.org/debian bullseye/main amd64 libsvg-graph-perl all 0.02-3 [114 kB] Get:391 http://deb.debian.org/debian bullseye/main amd64 libtext-csv-xs-perl amd64 1.45-1 [130 kB] Get:392 http://deb.debian.org/debian bullseye/main amd64 libtext-iconv-perl amd64 1.7-7+b1 [16.1 kB] Get:393 http://deb.debian.org/debian bullseye/main amd64 libtie-ixhash-perl all 1.23-2.1 [11.8 kB] Get:394 http://deb.debian.org/debian bullseye/main amd64 libtype-tiny-xs-perl amd64 0.022-1 [25.8 kB] Get:395 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:396 http://deb.debian.org/debian bullseye/main amd64 libxml-filter-buffertext-perl all 1.01-6 [6916 B] Get:397 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get:398 http://deb.debian.org/debian bullseye/main amd64 libxml-libxslt-perl amd64 1.99-1+b1 [47.3 kB] Get:399 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-writer-perl all 0.57-1.1 [22.8 kB] Get:400 http://deb.debian.org/debian bullseye/main amd64 libxmlrpc-lite-perl all 0.717-4 [22.6 kB] Get:401 http://deb.debian.org/debian bullseye/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:402 http://deb.debian.org/debian bullseye/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:403 http://deb.debian.org/debian bullseye/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:404 http://deb.debian.org/debian bullseye/main amd64 lynx-common all 2.9.0dev.6-3~deb11u1 [1192 kB] Get:405 http://deb.debian.org/debian bullseye/main amd64 lynx amd64 2.9.0dev.6-3~deb11u1 [652 kB] Get:406 http://deb.debian.org/debian bullseye/main amd64 mafft amd64 7.475-1 [1051 kB] Get:407 http://deb.debian.org/debian bullseye/main amd64 maq amd64 0.7.1-9 [303 kB] Get:408 http://deb.debian.org/debian bullseye/main amd64 med-config all 3.7 [21.6 kB] Get:409 http://deb.debian.org/debian bullseye/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:410 http://deb.debian.org/debian bullseye/main amd64 mustang amd64 3.2.3-4 [105 kB] Get:411 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:412 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:413 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+-legacy all 2.11.0+ds-1 [13.1 kB] Get:414 http://deb.debian.org/debian bullseye/main amd64 ncoils amd64 2002-8 [22.0 kB] Get:415 http://deb.debian.org/debian bullseye/main amd64 openmpi-common all 4.1.0-10 [179 kB] Get:416 http://deb.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.1.0-10 [238 kB] Get:417 http://deb.debian.org/debian bullseye/main amd64 pal2nal all 14.1-3 [17.8 kB] Get:418 http://deb.debian.org/debian bullseye/main amd64 paml amd64 4.9j+dfsg-3 [685 kB] Get:419 http://deb.debian.org/debian bullseye/main amd64 perl-doc all 5.32.1-4+deb11u3 [7663 kB] Get:420 http://deb.debian.org/debian bullseye/main amd64 perl-tk amd64 1:804.035-0.1+b1 [2016 kB] Get:421 http://deb.debian.org/debian bullseye/main amd64 pftools amd64 3.2.6-1 [45.8 MB] Get:422 http://deb.debian.org/debian bullseye/main amd64 phylip amd64 1:3.697+dfsg-2 [919 kB] Get:423 http://deb.debian.org/debian bullseye/main amd64 phyml amd64 3:3.3.20200621-1 [1781 kB] Get:424 http://deb.debian.org/debian bullseye/main amd64 poa amd64 2.0+20060928-8 [53.2 kB] Get:425 http://deb.debian.org/debian bullseye/main amd64 prank amd64 0.0.170427+dfsg-3 [395 kB] Get:426 http://deb.debian.org/debian bullseye/main amd64 primer3 amd64 2.4.0-4 [181 kB] Get:427 http://deb.debian.org/debian bullseye/main amd64 probalign amd64 1.4-9 [67.0 kB] Get:428 http://deb.debian.org/debian bullseye/main amd64 probcons amd64 1.12-13 [119 kB] Get:429 http://deb.debian.org/debian bullseye/main amd64 proda amd64 1.0-13 [64.9 kB] Get:430 http://deb.debian.org/debian bullseye/main amd64 publicsuffix all 20220811.1734-0+deb11u1 [127 kB] Get:431 http://deb.debian.org/debian bullseye/main amd64 raxml amd64 8.2.12+dfsg-6+b4 [1434 kB] Get:432 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:433 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:434 http://deb.debian.org/debian bullseye/main amd64 sim4 amd64 0.0.20121010-8 [359 kB] Get:435 http://deb.debian.org/debian bullseye/main amd64 t-coffee amd64 13.41.0.28bdc39+dfsg-4 [1003 kB] Get:436 http://deb.debian.org/debian bullseye/main amd64 tigr-glimmer amd64 3.02b-5 [286 kB] Get:437 http://deb.debian.org/debian bullseye/main amd64 tm-align amd64 20190822+dfsg-2 [865 kB] Get:438 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:439 http://deb.debian.org/debian bullseye/main amd64 wise-data all 2.4.1-23 [78.2 kB] Get:440 http://deb.debian.org/debian bullseye/main amd64 wise amd64 2.4.1-23 [994 kB] Get:441 http://deb.debian.org/debian bullseye/main amd64 xauth amd64 1:1.1-1 [40.5 kB] Get:442 http://deb.debian.org/debian bullseye/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:443 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 379 MB in 6s (62.9 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../00-libapparmor1_2.13.6-10_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.6-10) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../01-libdbus-1-3_1.12.28-0+deb11u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package dbus. Preparing to unpack .../03-dbus_1.12.28-0+deb11u1_amd64.deb ... Unpacking dbus (1.12.28-0+deb11u1) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../04-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../05-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../06-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../07-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../08-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package fonts-droid-fallback. Preparing to unpack .../09-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../10-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../11-libmpfr6_4.1.0-3_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.0-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../13-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../14-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up readline-common (8.1-1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8802 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.1.0-1_amd64.deb ... Unpacking gawk (1:5.1.0-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.10-1_all.deb ... Unpacking poppler-data (0.4.10-1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9795 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... 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Setting up media-types (4.0.0) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up libtext-iconv-perl (1.7-7+b1) ... Setting up javascript-common (11+nmu1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up mysql-common (5.8+1.0.7) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libapparmor1:amd64 (2.13.6-10) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-8) ... Setting up fonts-noto-mono (20201225-1) ... Setting up probcons (1.12-13) ... Setting up java-common (0.72) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up libfcgi0ldbl:amd64 (2.4.2-2) ... Setting up poa (2.0+20060928-8) ... Setting up xdg-user-dirs (0.17-2) ... Setting up ruby-power-assert (1.1.7-2) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up gawk (1:5.1.0-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... No schema files found: doing nothing. Setting up bwa (0.7.17-6+b1) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up unzip (6.0-26+deb11u1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up liblab-gamut1:amd64 (2.42.2-5) ... Setting up phylip (1:3.697+dfsg-2) ... Setting up libfcgi-bin (2.4.2-2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libapr1:amd64 (1.7.0-6+deb11u2) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up ncoils (2002-8) ... Setting up hyphy-common (2.5.28+dfsg-3) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5+b9) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up muscle (1:3.8.1551-2) ... Setting up bzip2 (1.0.8-4) ... Setting up emboss-data (6.6.0+dfsg-9) ... Setting up libldap-common (2.4.57+dfsg-3+deb11u1) ... Setting up probalign (1.4-9) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libjansson4:amd64 (2.13.1-1.1) ... Setting up t-coffee (13.41.0.28bdc39+dfsg-4) ... Setting up poppler-data (0.4.10-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Setting up ruby-minitest (5.13.0-1) ... Setting up mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libasound2-data (1.2.4-1.1) ... Setting up infernal (1.1.4-1) ... Setting up primer3 (2.4.0-4) ... Setting up zip (3.0-12) ... Setting up kalign (1:3.3-1+b3) ... Setting up libglib2.0-data (2.66.8-1+deb11u4) ... Setting up dialign-tx-data (1.0.2-13) ... Setting up lagan (2.0-6) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up mustang (3.2.3-4) ... Setting up ruby-test-unit (3.3.9-1) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up libjbig2dec0:amd64 (0.19-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libidn11:amd64 (1.33-3) ... Setting up proda (1.0-13) ... Setting up sim4 (0.0.20121010-8) ... Setting up libpathplan4:amd64 (2.42.2-5) ... Setting up libavahi-common-data:amd64 (0.8-5+deb11u2) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up dbus (1.12.28-0+deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xz-utils (5.2.5-2.1~deb11u1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up wise-data (2.4.1-23) ... Setting up lynx-common (2.9.0dev.6-3~deb11u1) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-2) ... Setting up libltdl7:amd64 (2.4.6-15) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up alsa-topology-conf (1.2.4-1) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up paml (4.9j+dfsg-3) ... Setting up dialign-tx (1.0.2-13) ... Setting up liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Setting up pal2nal (14.1-3) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up fonts-liberation (1:1.07.4-11) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.0-10) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libopenjp2-7:amd64 (2.4.0-3) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2+deb11u1) ... Setting up netbase (6.3) ... Setting up libcdt5:amd64 (2.42.2-5) ... Setting up libcgraph6:amd64 (2.42.2-5) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up menu (2.1.48) ... Setting up libfido2-1:amd64 (1.6.0-2) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up tigr-glimmer (3.02b-5) ... Setting up dialign (2.2.1-11) ... Setting up ruby-xmlrpc (0.3.0-2) ... Setting up publicsuffix (20220811.1734-0+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up exonerate (2.4.0-5) ... Setting up bedtools (2.30.0+dfsg-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up maq (0.7.1-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up raxml (8.2.12+dfsg-6+b4) ... Setting up libaprutil1:amd64 (1.6.1-5+deb11u1) ... Setting up libgs9-common (9.53.3~dfsg-7+deb11u7) ... Setting up libgts-bin (0.7.6+darcs121130-4+b1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up alsa-ucm-conf (1.2.4-2) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up wise (2.4.1-23) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u12) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up hyphy-pt (2.5.28+dfsg-3) ... Setting up clustalo (1.2.4-7) ... Setting up libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Setting up tm-align (20190822+dfsg-2) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up shared-mime-info (2.0-1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libgvpr2:amd64 (2.42.2-5) ... Setting up libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Setting up hmmer (3.3.2+dfsg-1) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u12) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up lynx (2.9.0dev.6-3~deb11u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up python3.9 (3.9.2-1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (33.2-1) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up openssh-client (1:8.4p1-5+deb11u3) ... Setting up libpq5:amd64 (13.15-0+deb11u1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up python3 (3.9.2-3) ... Setting up rubygems-integration (1.18) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up samtools (1.11-1) ... Setting up libxnvctrl0:amd64 (470.239.06-1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libpackage-stash-xs-perl (0.29-1+b2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libset-object-perl (1.41-1) ... Setting up libdata-dump-perl (1.23-1.1) ... Setting up libref-util-perl (0.204-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up libxml-writer-perl (0.900-1) ... Setting up libcrypt-rc4-perl (2.02-3) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libio-html-perl (1.004-2) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libmath-derivative-perl (1.01-1.1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libset-scalar-perl (1.29-2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libtype-tiny-xs-perl (0.022-1) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up xauth (1:1.1-1) ... Setting up mummer (3.23+dfsg-7) ... Setting up libfcgi-perl:amd64 (0.79+ds-2) ... Setting up libsub-uplevel-perl (0.2800-1.1) ... Setting up libcarp-clan-perl (6.08-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libdevel-symdump-perl (2.18-4) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up mailcap (3.69) ... Setting up libpostscript-perl (0.06-3.1) ... Setting up libsort-naturally-perl (1.03-2) ... Setting up liburi-perl (5.08-1) ... Setting up libdbi-perl:amd64 (1.643-3+b1) ... Setting up libdate-manip-perl (6.83-1) ... Setting up libfile-sort-perl (1.01-2) ... Setting up libtext-csv-perl (2.00-1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up libmath-spline-perl (0.02-2) ... Setting up libjcode-pm-perl (2.06-1+b1) ... Setting up libio-sessiondata-perl (1.03-1.1) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libfile-slurp-perl (9999.32-1) ... Setting up libtie-ixhash-perl (1.23-2.1) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b9) ... Setting up libfile-listing-perl (6.14-1) ... Setting up mime-support (3.66) ... Setting up libgs9:amd64 (9.53.3~dfsg-7+deb11u7) ... Setting up libtest-requiresinternet-perl (0.05-3) ... Setting up libconvert-binary-c-perl (0.84-1) ... Setting up libclass-inspector-perl (1.36-1) ... Setting up libfont-afm-perl (1.20-3) ... Setting up bowtie (1.3.0+dfsg1-1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libref-util-xs-perl (0.117-1+b3) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up perl-tk (1:804.035-0.1+b1) ... Setting up libio-pty-perl (1:1.15-2) ... Setting up mafft (7.475-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libauthen-sasl-perl (2.1600-1.1) ... Setting up libfile-slurp-tiny-perl (0.004-1) ... Setting up libipc-sharelite-perl (0.17-4+b5) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libheap-perl (0.80-3) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libtype-tiny-perl (1.012001-2) ... Setting up perl-doc (5.32.1-4+deb11u3) ... Setting up libmldbm-perl (2.05-2.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up libsvg-perl (2.85-1) ... Setting up libnet-http-perl (6.20-1) ... Setting up libbsd-resource-perl (1.2911-1+b5) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libdbd-pg-perl (3.14.2-1+b1) ... Setting up libtext-csv-xs-perl (1.45-1) ... Setting up fsa (1.15.9+dfsg-6) ... Setting up libexception-class-perl (1.44-1) ... Setting up libxaw7:amd64 (2:1.0.13-1.1) ... Setting up libgraph-perl (1:0.9716-2) ... Setting up ghostscript (9.53.3~dfsg-7+deb11u7) ... Setting up apache2-bin (2.4.59-1~deb11u1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libyaml-perl (1.30-1) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up libspreadsheet-writeexcel-perl (2.40-1.1) ... Setting up libbit-vector-perl (7.4-1+b7) ... Setting up libfreezethaw-perl (0.5001-2.1) ... Setting up liberror-perl (0.17029-1) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up libdigest-perl-md5-perl (1.9-1.1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libreadonly-perl (2.050-3) ... Setting up libunicode-map-perl (0.112-12+b3) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up libdbd-mysql-perl:amd64 (4.050-3+b1) ... Setting up libipc-run-perl (20200505.0-1) ... Setting up libole-storage-lite-perl (0.20-1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1.1+deb11u1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtree-dagnode-perl (1.32-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up pftools (3.2.6-1) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up emboss-lib (6.6.0+dfsg-9) ... Setting up libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up libalgorithm-diff-xs-perl (0.04-6+b1) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libhtml-form-perl (6.07-1) ... Setting up libbio-perl-run-perl (1.7.3-6) ... Setting up ncbi-blast+-legacy (2.11.0+ds-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up emboss (6.6.0+dfsg-9) ... Setting up libdate-calc-perl (6.4-1.1) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdate-calc-xs-perl (6.4-1+b6) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libcgi-pm-perl (4.51-1) ... Setting up libtest-differences-perl (0.67-1) ... Setting up libhtml-format-perl (2.12-1.1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libbio-tools-run-alignment-clustalw-perl (1.7.4-2) ... Setting up libgd-perl (2.73-1+b1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libgvc6 (2.42.2-5) ... Setting up libxml-filter-buffertext-perl (1.01-6) ... Setting up libace-perl (1.92-10) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-1.1) ... Setting up libhttp-daemon-perl (6.12-1+deb11u1) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20200621-1) ... Setting up graphviz (2.42.2-5) ... Setting up libxml-sax-writer-perl (0.57-1.1) ... Setting up libsvg-graph-perl (0.02-3) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libtest-most-perl (0.37-1) ... Setting up libcgi-fast-perl (1:2.15-1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmime-tools-perl (5.509-1) ... Setting up libarray-compare-perl (3.0.8-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libxml-libxslt-perl (1.99-1+b1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up bioperl (1.7.7-2) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up libwww-perl (6.52-1) ... Setting up openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libbio-asn1-entrezgene-perl (1.730-2) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.23+9-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up libbio-eutilities-perl (1.77-1) ... Setting up ruby (1:2.7+2) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up libapache2-mod-perl2 (2.0.11-4) ... Setting up libbio-db-refseq-perl (1.7.4-1) ... Setting up libapache2-reload-perl (0.13-3) ... Setting up rake (13.0.3-1) ... Setting up libbio-tools-run-remoteblast-perl (1.7.3-3) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up libxml-parser-perl:amd64 (2.46-2) ... Setting up libxml-twig-perl (1:3.52-1) ... Setting up ruby-rubygems (3.2.5-2) ... Setting up libruby2.7:amd64 (2.7.4-1+deb11u1) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libbio-db-ncbihelper-perl (1.7.6-4) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-3.1) ... Setting up libsoap-lite-perl (1.27-1) ... Setting up libgraphviz-perl (2.24-1) ... Setting up libxml-dom-perl (1.46-1) ... Setting up ruby2.7 (2.7.4-1+deb11u1) ... Setting up libxml-dom-xpath-perl (0.14-3) ... Setting up libbio-variation-perl (1.7.5-2) ... Setting up libxmlrpc-lite-perl (0.717-4) ... Setting up libbio-featureio-perl (1.6.905-2) ... Setting up libbio-cluster-perl (1.7.3-5) ... Setting up bioperl-run (1.7.3-6) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Processing triggers for menu (2.1.48) ... Setting up blends-common (0.7.2) ... Setting up med-config (3.7) ... Adding group `med' (GID 153) ... Done. WARNING: tempfile is deprecated; consider using mktemp instead. Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', '-y', 'install', 'libbio-db-refseq-perl=1.7.4-1'] 1m22.0s INFO: Running scripts post_install 1m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_install_exceptions'] 1m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_install_exceptions'] 1m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 1m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 1m27.2s ERROR: WARN: Broken symlinks: /usr/lib/jvm/java-11-openjdk-amd64/lib/src.zip -> ../../openjdk-11/src.zip (openjdk-11-jdk-headless:amd64) /usr/lib/jvm/java-11-openjdk-amd64/lib/security/blacklisted.certs -> /etc/java-11-openjdk/security/blacklisted.certs (openjdk-11-jre-headless:amd64) 1m27.3s INFO: /bin converted to /usr/bin by /usr merge 1m27.3s INFO: /lib converted to /usr/lib by /usr merge 1m27.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m27.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m27.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m27.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m27.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m27.3s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 1m27.3s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 1m27.3s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m27.3s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m27.3s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m27.3s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m27.3s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m27.3s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m27.3s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m27.3s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m27.3s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m27.3s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m27.3s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m27.3s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m27.3s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m27.3s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m27.3s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m27.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m27.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m27.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m27.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m27.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m27.3s INFO: /sbin converted to /usr/sbin by /usr merge 1m28.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', '-ac', '--ignore-obsolete'] 1m33.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', '-ac', '--ignore-obsolete'] 1m33.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m33.1s DUMP: 0.15.6 1m33.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m33.1s INFO: Running adequate version 0.15.6 now. 1m33.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'libbio-db-refseq-perl'] 1m33.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'libbio-db-refseq-perl'] 1m33.2s INFO: Running scripts pre_remove 1m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m43.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_exceptions'] 1m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/pre_remove_exceptions'] 1m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m44.2s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed alsa-topology-conf alsa-topology-conf 1.2.4-1 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.4-2 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-2 install ok installed apache2-bin apache2-bin 2.4.59-1~deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bedtools bedtools 2.30.0+dfsg-1 install ok installed bioperl bioperl 1.7.7-2 install ok installed bioperl-run bioperl-run 1.7.3-6 install ok installed blends-common blends-common 0.7.2 install ok installed bowtie bowtie 1.3.0+dfsg1-1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed bwa bwa 0.7.17-6+b1 install ok installed bzip2 bzip2 1.0.8-4 install ok installed ca-certificates ca-certificates 20210119 install ok installed ca-certificates-java ca-certificates-java 20190909+deb11u1 install ok installed clustalo clustalo 1.2.4-7 install ok installed clustalw clustalw 2.1+lgpl-7 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed dbus dbus 1.12.28-0+deb11u1 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed default-jdk-headless default-jdk-headless 2:1.11-72 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed dialign dialign 2.2.1-11 install ok installed dialign-tx dialign-tx 1.0.2-13 install ok installed dialign-tx-data dialign-tx-data 1.0.2-13 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed emboss emboss 6.6.0+dfsg-9 install ok installed emboss-data emboss-data 6.6.0+dfsg-9 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-9 install ok installed exonerate exonerate 2.4.0-5 install ok installed file file 1:5.39-3+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-11 install ok installed fonts-noto-mono fonts-noto-mono 20201225-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed fsa fsa 1.15.9+dfsg-6 install ok installed gawk gawk 1:5.1.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed ghostscript ghostscript 9.53.3~dfsg-7+deb11u7 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed graphviz graphviz 2.42.2-5 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hmmer hmmer 3.3.2+dfsg-1 install ok installed hostname hostname 3.23 install ok installed hyphy-common hyphy-common 2.5.28+dfsg-3 install ok installed hyphy-pt hyphy-pt 2.5.28+dfsg-3 install ok installed ibverbs-providers:amd64 ibverbs-providers 33.2-1 install ok installed infernal infernal 1.1.4-1 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed java-common java-common 0.72 install ok installed javascript-common javascript-common 11+nmu1 install ok installed kalign kalign 1:3.3-1+b3 install ok installed lagan lagan 2.0-6 install ok installed libace-perl libace-perl 1.92-10 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-6+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-7 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.11-4 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-3 install ok installed libapparmor1:amd64 libapparmor1 2.13.6-10 install ok installed libapr1:amd64 libapr1 1.7.0-6+deb11u2 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-5+deb11u1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-5+deb11u1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-5+deb11u1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libargtable2-0 libargtable2-0 13-1.1 install ok installed libarray-compare-perl libarray-compare-perl 3.0.8-1 install ok installed libasound2:amd64 libasound2 1.2.4-1.1 install ok installed libasound2-data libasound2-data 1.2.4-1.1 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1.1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5+deb11u2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5+deb11u2 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5+deb11u2 install ok installed libb-hooks-endofscope-perl libb-hooks-endofscope-perl 0.24-1.1 install ok installed libb-hooks-op-check-perl libb-hooks-op-check-perl 0.22-1+b3 install ok installed libbio-asn1-entrezgene-perl libbio-asn1-entrezgene-perl 1.730-2 install ok installed libbio-cluster-perl libbio-cluster-perl 1.7.3-5 install ok installed libbio-db-ncbihelper-perl libbio-db-ncbihelper-perl 1.7.6-4 install ok installed libbio-db-refseq-perl libbio-db-refseq-perl 1.7.4-1 install ok installed libbio-eutilities-perl libbio-eutilities-perl 1.77-1 install ok installed libbio-featureio-perl libbio-featureio-perl 1.6.905-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.7-2 install ok installed libbio-perl-run-perl libbio-perl-run-perl 1.7.3-6 install ok installed libbio-tools-run-alignment-clustalw-perl libbio-tools-run-alignment-clustalw-perl 1.7.4-2 install ok installed libbio-tools-run-remoteblast-perl libbio-tools-run-remoteblast-perl 1.7.3-3 install ok installed libbio-variation-perl libbio-variation-perl 1.7.5-2 install ok installed libbit-vector-perl libbit-vector-perl 7.4-1+b7 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd-resource-perl libbsd-resource-perl 1.2911-1+b5 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcache-cache-perl libcache-cache-perl 1.08-2 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libcarp-clan-perl libcarp-clan-perl 6.08-1 install ok installed libcbor0:amd64 libcbor0 0.5.0+dfsg-2 install ok installed libcdt5:amd64 libcdt5 2.42.2-5 install ok installed libcgi-fast-perl libcgi-fast-perl 1:2.15-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.51-1 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-5 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libclass-inspector-perl libclass-inspector-perl 1.36-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.13-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-3+b7 install ok installed libclone-perl libclone-perl 0.45-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.84-1 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcups2:amd64 libcups2 2.3.3op2-3+deb11u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+deb11u12 install ok installed libcurl4:amd64 libcurl4 7.74.0-1.3+deb11u12 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1.1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1.1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b6 install ok installed libdate-manip-perl libdate-manip-perl 6.83-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-3+b1 install ok installed libdbd-pg-perl libdbd-pg-perl 3.14.2-1+b1 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.66-1+b1 install ok installed libdbi-perl:amd64 libdbi-perl 1.643-3+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.28-0+deb11u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libdevel-callchecker-perl libdevel-callchecker-perl 0.008-1+b2 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-4 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1.1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-5 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-1.1 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.002002-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfabric1 libfabric1 1.11.0-2 install ok installed libfcgi-bin libfcgi-bin 2.4.2-2 install ok installed libfcgi-perl:amd64 libfcgi-perl 0.79+ds-2 install ok installed libfcgi0ldbl:amd64 libfcgi0ldbl 2.4.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfido2-1:amd64 libfido2-1 1.6.0-2 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libfile-slurp-perl libfile-slurp-perl 9999.32-1 install ok installed libfile-slurp-tiny-perl libfile-slurp-tiny-perl 0.004-1 install ok installed libfile-sort-perl libfile-sort-perl 1.01-2 install ok installed libfont-afm-perl libfont-afm-perl 1.20-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-2.1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd-perl libgd-perl 2.73-1+b1 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u4 install ok installed libglib2.0-data libglib2.0-data 2.66.8-1+deb11u4 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-8 install ok installed libgraph-perl libgraph-perl 1:0.9716-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgraphviz-perl libgraphviz-perl 2.24-1 install ok installed libgs9:amd64 libgs9 9.53.3~dfsg-7+deb11u7 install ok installed libgs9-common libgs9-common 9.53.3~dfsg-7+deb11u7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4+b1 install ok installed libgvc6 libgvc6 2.42.2-5 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libheap-perl libheap-perl 0.80-3 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b1 install ok installed libhtml-form-perl libhtml-form-perl 6.07-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1.1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.75-1+b1 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-1.1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.12-1+deb11u1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.28-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.4.1+dfsg-1 install ok installed libhwloc15:amd64 libhwloc15 2.4.1+dfsg-1 install ok installed libibverbs1:amd64 libibverbs1 33.2-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn11:amd64 libidn11 1.33-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-15 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-pty-perl libio-pty-perl 1:1.15-2 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1.1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.069-1 install ok installed libio-string-perl libio-string-perl 1.08-3.1 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20200505.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b5 install ok installed libjansson4:amd64 libjansson4 2.13.1-1.1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.19-2 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.2-5 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-common libldap-common 2.4.57+dfsg-3+deb11u1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.430-2 install ok installed liblist-moreutils-xs-perl liblist-moreutils-xs-perl 0.430-2 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed libltdl7:amd64 libltdl7 2.4.6-15 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.3-1.1+deb11u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmagic-mgc libmagic-mgc 1:5.39-3+deb11u1 install ok installed libmagic1:amd64 libmagic1 1:5.39-3+deb11u1 install ok installed libmailtools-perl libmailtools-perl 2.21-1 install ok installed libmariadb3:amd64 libmariadb3 1:10.5.23-0+deb11u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-1.1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libmldbm-perl libmldbm-perl 2.05-2.1 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-1.1 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-1 install ok installed libmoo-perl libmoo-perl 2.004004-1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libnamespace-clean-perl libnamespace-clean-perl 0.27-1 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnet-http-perl libnet-http-perl 6.20-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-3+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.29-1 install ok installed libnss3:amd64 libnss3 2:3.61-1+deb11u3 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.20-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.4.0-3 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.0-10 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b9 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b9 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpackage-stash-perl libpackage-stash-perl 0.39-1 install ok installed libpackage-stash-xs-perl libpackage-stash-xs-perl 0.29-1+b2 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libparams-classify-perl libparams-classify-perl 0.015-1+b3 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.1-1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libpmix2:amd64 libpmix2 4.0.0-4.1+deb11u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpostscript-perl libpostscript-perl 0.06-3.1 install ok installed libpq5:amd64 libpq5 13.15-0+deb11u1 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed librdmacm1:amd64 librdmacm1 33.2-1 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed libreadonly-perl libreadonly-perl 2.050-3 install ok installed libref-util-perl libref-util-perl 0.204-1 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-1+b3 install ok installed librole-tiny-perl librole-tiny-perl 2.002004-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libruby2.7:amd64 libruby2.7 2.7.4-1+deb11u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libset-object-perl libset-object-perl 1.41-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.13-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-2 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1.1+deb11u1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2+deb11u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0800-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libstrictures-perl libstrictures-perl 2.000006-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-identify-perl libsub-identify-perl 0.14-1+b3 install ok installed libsub-name-perl libsub-name-perl 0.26-1+b1 install ok installed libsub-quote-perl libsub-quote-perl 2.006006-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1.1 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-3 install ok installed libsvg-perl libsvg-perl 2.85-1 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtest-deep-perl libtest-deep-perl 1.130-1 install ok installed libtest-differences-perl libtest-differences-perl 0.67-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.37-1 install ok installed libtest-requiresinternet-perl libtest-requiresinternet-perl 0.05-3 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-csv-perl libtext-csv-perl 2.00-1 install ok installed libtext-csv-xs-perl libtext-csv-xs-perl 1.45-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-7+b1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2.1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.32-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtype-tiny-perl libtype-tiny-perl 1.012001-2 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.022-1 install ok installed libucx0:amd64 libucx0 1.10.1~rc1+really.1.10.0-1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunicode-map-perl libunicode-map-perl 0.112-12+b3 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed liburi-perl liburi-perl 5.08-1 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libvariable-magic-perl libvariable-magic-perl 0.62-1+b3 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwww-perl libwww-perl 6.52-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1.1 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml-dom-perl libxml-dom-perl 1.46-1 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-3 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-6 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-2+b1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.99-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1.1 install ok installed libxml-parser-perl:amd64 libxml-parser-perl 2.46-2 install ok installed libxml-perl libxml-perl 0.08-3.1 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1.1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1.1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-1 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-1.1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-1 install ok installed libxml-writer-perl libxml-writer-perl 0.900-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-4 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.239.06-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.34-4+deb11u1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.82+repack-1+b1 install ok installed libyaml-perl libyaml-perl 1.30-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed lynx lynx 2.9.0dev.6-3~deb11u1 install ok installed lynx-common lynx-common 2.9.0dev.6-3~deb11u1 install ok installed mafft mafft 7.475-1 install ok installed mailcap mailcap 3.69 install ok installed maq maq 0.7.1-9 install ok installed mariadb-common mariadb-common 1:10.5.23-0+deb11u1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed med-config med-config 3.7 install ok installed media-types media-types 4.0.0 install ok installed menu menu 2.1.48 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed mummer mummer 3.23+dfsg-7 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-4 install ok installed mysql-common mysql-common 5.8+1.0.7 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncoils ncoils 2002-8 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed netbase netbase 6.3 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-2 install ok installed openjdk-11-jdk-headless:amd64 openjdk-11-jdk-headless 11.0.23+9-1~deb11u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.23+9-1~deb11u1 install ok installed openmpi-bin openmpi-bin 4.1.0-10 install ok installed openmpi-common openmpi-common 4.1.0-10 install ok installed openssh-client openssh-client 1:8.4p1-5+deb11u3 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed pal2nal pal2nal 14.1-3 install ok installed paml paml 4.9j+dfsg-3 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-doc perl-doc 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed perl-tk perl-tk 1:804.035-0.1+b1 install ok installed pftools pftools 3.2.6-1 install ok installed phylip phylip 1:3.697+dfsg-2 install ok installed phyml phyml 3:3.3.20200621-1 install ok installed poa poa 2.0+20060928-8 install ok installed poppler-data poppler-data 0.4.10-1 install ok installed prank prank 0.0.170427+dfsg-3 install ok installed primer3 primer3 2.4.0-4 install ok installed probalign probalign 1.4-9 install ok installed probcons probcons 1.12-13 install ok installed proda proda 1.0-13 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb11u1 install ok installed python3 python3 3.9.2-3 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed rake rake 13.0.3-1 install ok installed raxml raxml 8.2.12+dfsg-6+b4 install ok installed readline-common readline-common 8.1-1 install ok installed ruby ruby 1:2.7+2 install ok installed ruby-minitest ruby-minitest 5.13.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.7-2 install ok installed ruby-rubygems ruby-rubygems 3.2.5-2 install ok installed ruby-test-unit ruby-test-unit 3.3.9-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.7 ruby2.7 2.7.4-1+deb11u1 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed samtools samtools 1.11-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed sim4 sim4 0.0.20121010-8 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed t-coffee t-coffee 13.41.0.28bdc39+dfsg-4 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tigr-glimmer tigr-glimmer 3.02b-5 install ok installed tm-align tm-align 20190822+dfsg-2 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed wise wise 2.4.1-23 install ok installed wise-data wise-data 2.4.1-23 install ok installed x11-common x11-common 1:7.7+22 install ok installed xauth xauth 1:1.1-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xz-utils xz-utils 5.2.5-2.1~deb11u1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 1m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip', 'libbio-db-refseq-perl'] 1m50.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: alsa-topology-conf alsa-ucm-conf amap-align apache2-bin bedtools bioperl bioperl-run blends-common bowtie bwa bzip2 ca-certificates ca-certificates-java clustalo clustalw dbus default-jdk-headless default-jre-headless dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-lato fonts-liberation fonts-noto-mono fonts-urw-base35 fsa gawk ghostscript graphviz hmmer hyphy-common hyphy-pt ibverbs-providers infernal java-common javascript-common kalign lagan libace-perl libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libann0 libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarray-compare-perl libasound2 libasound2-data libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-endofscope-perl libb-hooks-op-check-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-eutilities-perl libbio-featureio-perl libbio-perl-perl libbio-perl-run-perl libbio-tools-run-alignment-clustalw-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbit-vector-perl libbrotli1 libbsd-resource-perl libbsd0 libcache-cache-perl libcairo2 libcapture-tiny-perl libcarp-clan-perl libcbor0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcurl3-gnutls libcurl4 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-bin libfcgi-perl libfcgi0ldbl libfido2-1 libfile-listing-perl libfile-slurp-perl libfile-slurp-tiny-perl libfile-sort-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libheap-perl libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-jquery liblab-gamut1 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblist-moreutils-xs-perl liblmdb0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmime-tools-perl libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmpdec3 libmpfr6 libnamespace-clean-perl libncurses6 libncursesw6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnghttp2-14 libnl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1 libole-storage-lite-perl libopenjp2-7 libopenmpi3 libossp-uuid-perl libossp-uuid16 libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libpmix2 libpng16-16 libpostscript-perl libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-object-perl libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libstatistics-descriptive-perl libstrictures-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvg-graph-perl libsvg-perl libtask-weaken-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-csv-perl libtext-csv-xs-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtree-dagnode-perl libtry-tiny-perl libtype-tiny-perl libtype-tiny-xs-perl libucx0 libunicode-map-perl liburi-perl libvariable-magic-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl lynx lynx-common mafft mailcap maq mariadb-common med-config media-types menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase ocl-icd-libopencl1 openjdk-11-jdk-headless openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pal2nal paml perl perl-doc perl-modules-5.32 perl-openssl-defaults perl-tk pftools phylip phyml poa poppler-data prank primer3 probalign probcons proda publicsuffix python3 python3-minimal python3.9 python3.9-minimal rake raxml readline-common ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip 0 upgraded, 0 newly installed, 443 to remove and 0 not upgraded. After this operation, 1502 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30628 files and directories currently installed.) Removing alsa-topology-conf (1.2.4-1) ... Removing alsa-ucm-conf (1.2.4-2) ... Removing amap-align (2.2+git20080214.600fc29+dfsg-2) ... Removing libapache2-reload-perl (0.13-3) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.11-4) ... Removing apache2-bin (2.4.59-1~deb11u1) ... Removing bedtools (2.30.0+dfsg-1) ... Removing bioperl-run (1.7.3-6) ... Removing bioperl (1.7.7-2) ... Removing med-config (3.7) ... Removing blends-common (0.7.2) ... Removing bowtie (1.3.0+dfsg1-1) ... Removing bwa (0.7.17-6+b1) ... Removing bzip2 (1.0.8-4) ... Removing default-jdk-headless (2:1.11-72) ... Removing openjdk-11-jdk-headless:amd64 (11.0.23+9-1~deb11u1) ... Removing default-jre-headless (2:1.11-72) ... Removing clustalo (1.2.4-7) ... Removing libbio-tools-run-alignment-clustalw-perl (1.7.4-2) ... Removing clustalw (2.1+lgpl-7) ... Removing dbus (1.12.28-0+deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-11) ... Removing dialign-tx (1.0.2-13) ... Removing dialign-tx-data (1.0.2-13) ... Removing emboss (6.6.0+dfsg-9) ... Removing emboss-data (6.6.0+dfsg-9) ... Removing emboss-lib (6.6.0+dfsg-9) ... Removing fsa (1.15.9+dfsg-6) ... Removing exonerate (2.4.0-5) ... Removing file (1:5.39-3+deb11u1) ... Removing libgraphviz-perl (2.24-1) ... Removing graphviz (2.42.2-5) ... Removing libgvc6 (2.42.2-5) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing perl-tk (1:804.035-0.1+b1) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libgd-perl (2.73-1+b1) ... Removing libgd3:amd64 (2.3.0-2) ... Removing fonts-dejavu-core (2.37-2) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing fonts-lato (2.0-2.1) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing fonts-liberation (1:1.07.4-11) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing fonts-noto-mono (20201225-1) ... Removing ghostscript (9.53.3~dfsg-7+deb11u7) ... Removing libgs9:amd64 (9.53.3~dfsg-7+deb11u7) ... Removing libgs9-common (9.53.3~dfsg-7+deb11u7) ... Removing mummer (3.23+dfsg-7) ... Removing gawk (1:5.1.0-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing hmmer (3.3.2+dfsg-1) ... Removing hyphy-pt (2.5.28+dfsg-3) ... Removing hyphy-common (2.5.28+dfsg-3) ... Removing phyml (3:3.3.20200621-1) ... Removing openmpi-bin (4.1.0-10) ... Removing libopenmpi3:amd64 (4.1.0-10) ... Removing libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Removing libfabric1 (1.11.0-2) ... Removing ibverbs-providers:amd64 (33.2-1) ... Removing infernal (1.1.4-1) ... Removing javascript-common (11+nmu1) ... Removing kalign (1:3.3-1+b3) ... Removing lagan (2.0-6) ... Removing libace-perl (1.92-10) ... Removing libtest-most-perl (0.37-1) ... Removing libtest-differences-perl (0.67-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-xs-perl (0.04-6+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libann0 (1.1.2+doc-7) ... Removing libapparmor1:amd64 (2.13.6-10) ... Removing libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Removing libaprutil1:amd64 (1.6.1-5+deb11u1) ... Removing libapr1:amd64 (1.7.0-6+deb11u2) ... Removing libargtable2-0 (13-1.1) ... Removing libarray-compare-perl (3.0.8-1) ... Removing libauthen-sasl-perl (2.1600-1.1) ... Removing libnamespace-clean-perl (0.27-1) ... Removing libb-hooks-endofscope-perl (0.24-1.1) ... Removing libpackage-stash-perl (0.39-1) ... Removing libmodule-implementation-perl (0.09-1.1) ... Removing libmoo-perl (2.004004-1) ... Removing libimport-into-perl (1.002005-1) ... Removing libmodule-runtime-perl (0.016-1) ... Removing libparams-classify-perl (0.015-1+b3) ... Removing libdevel-callchecker-perl (0.008-1+b2) ... Removing libb-hooks-op-check-perl (0.22-1+b3) ... Removing libbio-db-refseq-perl (1.7.4-1) ... Removing libbio-eutilities-perl (1.77-1) ... Removing libbio-featureio-perl (1.6.905-2) ... Removing libbio-tools-run-remoteblast-perl (1.7.3-3) ... Removing libbio-perl-run-perl (1.7.3-6) ... Removing libdate-calc-xs-perl (6.4-1+b6) ... Removing libdate-calc-perl (6.4-1.1) ... Removing libbit-vector-perl (7.4-1+b7) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u12) ... Removing libbsd-resource-perl (1.2911-1+b5) ... Removing lynx (2.9.0dev.6-3~deb11u1) ... Removing xauth (1:1.1-1) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libcarp-clan-perl (6.08-1) ... Removing openssh-client (1:8.4p1-5+deb11u3) ... Removing libfido2-1:amd64 (1.6.0-2) ... Removing libcbor0:amd64 (0.5.0+dfsg-2) ... Removing libgvpr2:amd64 (2.42.2-5) ... Removing libcgraph6:amd64 (2.42.2-5) ... Removing libcdt5:amd64 (2.42.2-5) ... Removing libcgi-fast-perl (1:2.15-1) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-4) ... Removing libsoap-lite-perl (1.27-1) ... Removing libclass-inspector-perl (1.36-1) ... Removing librole-tiny-perl (2.002004-1) ... Removing libclass-method-modifiers-perl (2.13-1) ... Removing libclass-xsaccessor-perl (1.19-3+b7) ... Removing libclone-perl (0.45-1+b1) ... Removing libconvert-binary-c-perl (0.84-1) ... Removing libmime-tools-perl (5.509-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1.1+deb11u1) ... Removing libcrypt-rc4-perl (2.02-3) ... Removing samtools (1.11-1) ... Removing libhts3:amd64 (1.11-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u12) ... Removing libdata-dump-perl (1.23-1.1) ... Removing libdate-manip-perl (6.83-1) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libdbd-mysql-perl:amd64 (4.050-3+b1) ... Removing libdbd-pg-perl (3.14.2-1+b1) ... Removing libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Removing libdbi-perl:amd64 (1.643-3+b1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libdevel-stacktrace-perl (2.0400-1) ... Removing libdevel-symdump-perl (2.18-4) ... Removing libdigest-perl-md5-perl (1.9-1.1) ... Removing libdivsufsort3:amd64 (2.0.1-5) ... Removing libdynaloader-functions-perl (0.003-1.1) ... Removing libxml-xpath-perl (1.44-1) ... Removing libxml-dom-xpath-perl (0.14-3) ... Removing libxml-dom-perl (1.46-1) ... Removing libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing ncbi-blast+-legacy (2.11.0+ds-1) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libtype-tiny-perl (1.012001-2) ... Removing libsvg-graph-perl (0.02-3) ... Removing libstatistics-descriptive-perl (3.0800-1) ... Removing liblist-moreutils-perl (0.430-2) ... Removing libexporter-tiny-perl (1.002002-1) ... Removing libfcgi-bin (2.4.2-2) ... Removing libfcgi-perl:amd64 (0.79+ds-2) ... Removing libfcgi0ldbl:amd64 (2.4.2-2) ... Removing pftools (3.2.6-1) ... Removing libfile-slurp-perl (9999.32-1) ... Removing libtree-dagnode-perl (1.32-1) ... Removing libfile-slurp-tiny-perl (0.004-1) ... Removing libfile-sort-perl (1.01-2) ... Removing libhtml-format-perl (2.12-1.1) ... Removing libfont-afm-perl (1.20-3) ... Removing libfreezethaw-perl (0.5001-2.1) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing perl-doc (5.32.1-4+deb11u3) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing mafft (7.475-1) ... Removing libhttp-daemon-perl (6.12-1+deb11u1) ... Removing libmailtools-perl (2.21-1) ... Removing libtext-csv-xs-perl (1.45-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b9) ... Removing libyaml-perl (1.30-1) ... Removing tm-align (20190822+dfsg-2) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing wise (2.4.1-23) ... Removing shared-mime-info (2.0-1) ... Removing libglib2.0-data (2.66.8-1+deb11u4) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libgpm2:amd64 (1.20.7-8) ... Removing libgraph-perl (1:0.9716-2) ... Removing libgts-bin (0.7.6+darcs121130-4+b1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Removing libheap-perl (0.80-3) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Removing libhtml-form-perl (6.07-1) ... Removing libhtml-tableextract-perl (2.15-1.1) ... Removing libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Removing libhwloc15:amd64 (2.4.1+dfsg-1) ... Removing librdmacm1:amd64 (33.2-1) ... Removing libibverbs1:amd64 (33.2-1) ... Removing libxaw7:amd64 (2:1.0.13-1.1) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libxml-libxslt-perl (1.99-1+b1) ... Removing libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Removing libidn11:amd64 (1.33-3) ... Removing libijs-0.35:amd64 (0.35-15) ... Removing libipc-run-perl (20200505.0-1) ... Removing libio-pty-perl (1:1.15-2) ... Removing libio-sessiondata-perl (1.03-1.1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libole-storage-lite-perl (0.20-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libjansson4:amd64 (2.13.1-1.1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjbig2dec0:amd64 (0.19-2) ... Removing libjcode-pm-perl (2.06-1+b1) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing liblab-gamut1:amd64 (2.42.2-5) ... Removing libpq5:amd64 (13.15-0+deb11u1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-common (2.4.57+dfsg-3+deb11u1) ... Removing liblist-moreutils-xs-perl (0.430-2) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing libltdl7:amd64 (2.4.6-15) ... Removing liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Removing libmagic1:amd64 (1:5.39-3+deb11u1) ... Removing libmagic-mgc (1:5.39-3+deb11u1) ... Removing libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Removing libmath-spline-perl (0.02-2) ... Removing libmath-derivative-perl (1.01-1.1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libmldbm-perl (2.05-2.1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-1) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.185-1) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libopenjp2-7:amd64 (2.4.0-3) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b9) ... Removing libpackage-stash-xs-perl (0.29-1+b2) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libspreadsheet-writeexcel-perl (2.40-1.1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libpathplan4:amd64 (2.42.2-5) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpostscript-perl (0.06-3.1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (10.2.1-6) ... Removing libreadline8:amd64 (8.1-1) ... Removing libreadonly-perl (2.050-3) ... Removing libref-util-perl (0.204-1) ... Removing libref-util-xs-perl (0.117-1+b3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libset-object-perl (1.41-1) ... Removing libset-scalar-perl (1.29-2) ... Removing libsigsegv2:amd64 (2.13-1) ... Removing libsort-naturally-perl (1.03-2) ... Removing libssh2-1:amd64 (1.9.0-2+deb11u1) ... Removing libstrictures-perl (2.000006-1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-identify-perl (0.14-1+b3) ... Removing libsub-name-perl (0.26-1+b1) ... Removing libsub-quote-perl (2.006006-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1.1) ... Removing libsvg-perl (2.85-1) ... Removing libtask-weaken-perl (1.06-1) ... Removing libtest-deep-perl (1.130-1) ... Removing libtest-requiresinternet-perl (0.05-3) ... Removing libtext-csv-perl (2.00-1) ... Removing libtext-iconv-perl (1.7-7+b1) ... Removing libthai-data (0.1.28-3) ... Removing libtie-ixhash-perl (1.23-2.1) ... Removing libtype-tiny-xs-perl (0.022-1) ... Removing libunicode-map-perl (0.112-12+b3) ... Removing libvariable-magic-perl (0.62-1+b3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxnvctrl0:amd64 (470.239.06-1) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxml-sax-writer-perl (0.57-1.1) ... Removing libxml-filter-buffertext-perl (1.01-6) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1.1) ... Removing libxml-perl (0.08-3.1) ... Removing libxml-regexp-perl (0.04-1.1) ... Removing libxml-sax-base-perl (1.09-1.1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libyaml-libyaml-perl (0.82+repack-1+b1) ... Removing lynx-common (2.9.0dev.6-3~deb11u1) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing maq (0.7.1-9) ... Removing mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing media-types (4.0.0) ... Removing menu (2.1.48) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-4) ... Removing mysql-common (5.8+1.0.7) ... Removing ncbi-data (6.1.20170106+dfsg1-9) ... Removing ncoils (2002-8) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-2) ... Removing openmpi-common (4.1.0-10) ... Removing pal2nal (14.1-3) ... Removing paml (4.9j+dfsg-3) ... Removing phylip (1:3.697+dfsg-2) ... Removing poa (2.0+20060928-8) ... Removing poppler-data (0.4.10-1) ... Removing prank (0.0.170427+dfsg-3) ... Removing primer3 (2.4.0-4) ... Removing probalign (1.4-9) ... Removing probcons (1.12-13) ... Removing proda (1.0-13) ... Removing publicsuffix (20220811.1734-0+deb11u1) ... Removing raxml (8.2.12+dfsg-6+b4) ... Removing readline-common (8.1-1) ... Removing sim4 (0.0.20121010-8) ... Removing t-coffee (13.41.0.28bdc39+dfsg-4) ... Removing tigr-glimmer (3.02b-5) ... Removing unzip (6.0-26+deb11u1) ... Removing wise-data (2.4.1-23) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.5-2.1~deb11u1) ... Removing zip (3.0-12) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing rake (13.0.3-1) ... Removing openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... Removing ruby-rubygems (3.2.5-2) ... Removing ruby (1:2.7+2) ... Removing ruby2.7 (2.7.4-1+deb11u1) ... Removing rubygems-integration (1.18) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing fonts-urw-base35 (20200910-1) ... Removing java-common (0.72) ... Removing libasound2:amd64 (1.2.4-1.1) ... Removing libasound2-data (1.2.4-1.1) ... Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Removing libavahi-client3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common-data:amd64 (0.8-5+deb11u2) ... Removing libbio-variation-perl (1.7.5-2) ... Removing libbio-db-ncbihelper-perl (1.7.6-4) ... Removing libbio-asn1-entrezgene-perl (1.730-2) ... Removing libbio-cluster-perl (1.7.3-5) ... Removing libbio-perl-perl (1.7.7-2) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libcache-cache-perl (1.08-2) ... Removing libcgi-pm-perl (4.51-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Removing libruby2.7:amd64 (2.7.4-1+deb11u1) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing libxml-twig-perl (1:3.52-1) ... Removing libxml-parser-perl:amd64 (2.46-2) ... Removing libwww-perl (6.52-1) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing liberror-perl (0.17029-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libfile-listing-perl (6.14-1) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.75-1+b1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libhttp-cookies-perl (6.10-1) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libio-socket-ssl-perl (2.069-1) ... Removing libio-string-perl (1.08-3.1) ... Removing libipc-sharelite-perl (0.17-4+b5) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libnet-http-perl (6.20-1) ... Removing libnet-ssleay-perl (1.88-3+b1) ... Removing libpcsclite1:amd64 (1.9.1-1) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libxml-writer-perl (0.900-1) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing netbase (6.3) ... Removing perl-openssl-defaults:amd64 (5) ... Removing ruby-minitest (5.13.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.3.9-1) ... Removing ruby-power-assert (1.1.7-2) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ca-certificates-java (20190909+deb11u1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libhttp-message-perl (6.28-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libhttp-date-perl (6.05-1) ... Removing libio-html-perl (1.004-2) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libnss3:amd64 (2:3.61-1+deb11u3) ... Removing libnspr4:amd64 (2:4.29-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libtimedate-perl (2.3300-2) ... Removing liburi-perl (5.08-1) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'remove', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip', 'libbio-db-refseq-perl'] 1m50.1s INFO: Running scripts post_remove 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_remove_exceptions'] 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_remove_exceptions'] 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip'] 1m51.5s DUMP: dpkg: warning: ignoring request to remove alsa-topology-conf which isn't installed dpkg: warning: ignoring request to remove alsa-ucm-conf which isn't installed dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed (Reading database ... 6902 files and directories currently installed.) Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909+deb11u1) ... dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-7) ... Purging configuration files for dbus (1.12.28-0+deb11u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove default-jdk-headless which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-4.2) ... Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-noto-mono (20201225-1) ... dpkg: warning: while removing fonts-noto-mono, directory '/usr/share/fonts/truetype/noto' not empty so not removed Purging configuration files for fonts-urw-base35 (20200910-1) ... dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/type1/urw-base35' not empty so not removed dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/opentype/urw-base35' not empty so not removed dpkg: warning: ignoring request to remove fsa which isn't installed Purging configuration files for gawk (1:5.1.0-1) ... dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.42.2-5) ... dpkg: warning: ignoring request to remove hmmer which isn't installed Purging configuration files for hyphy-common (2.5.28+dfsg-3) ... Purging configuration files for hyphy-pt (2.5.28+dfsg-3) ... Purging configuration files for ibverbs-providers:amd64 (33.2-1) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for java-common (0.72) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove lagan which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-munkres-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.11-4) ... dpkg: warning: ignoring request to remove libapache2-reload-perl which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libargtable2-0 which isn't installed dpkg: warning: ignoring request to remove libarray-compare-perl which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libauthen-sasl-perl which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-endofscope-perl which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed dpkg: warning: ignoring request to remove libbio-cluster-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-ncbihelper-perl which isn't installed dpkg: warning: ignoring request to remove libbio-eutilities-perl which isn't installed dpkg: warning: ignoring request to remove libbio-featureio-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-run-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-alignment-clustalw-perl which isn't installed dpkg: warning: ignoring request to remove libbio-tools-run-remoteblast-perl which isn't installed dpkg: warning: ignoring request to remove libbio-variation-perl which isn't installed dpkg: warning: ignoring request to remove libbit-vector-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcbor0 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binary-c-perl which isn't installed dpkg: warning: ignoring request to remove libconvert-binhex-perl which isn't installed dpkg: warning: ignoring request to remove libcrypt-rc4-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-perl which isn't installed dpkg: warning: ignoring request to remove libdate-calc-xs-perl which isn't installed dpkg: warning: ignoring request to remove libdate-manip-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbd-mysql-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libdigest-perl-md5-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfcgi-bin which isn't installed dpkg: warning: ignoring request to remove libfcgi-perl which isn't installed dpkg: warning: ignoring request to remove libfcgi0ldbl which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-perl which isn't installed dpkg: warning: ignoring request to remove libfile-slurp-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-sort-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreezethaw-perl which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u4) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed Purging configuration files for libgvc6 (2.42.2-5) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheap-perl which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libimport-into-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-sessiondata-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libio-stringy-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libipc-sharelite-perl which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libjcode-pm-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.57+dfsg-3+deb11u1) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-xs-perl which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.39-3+deb11u1) ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libmath-derivative-perl which isn't installed dpkg: warning: ignoring request to remove libmath-spline-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmime-tools-perl which isn't installed dpkg: warning: ignoring request to remove libmldbm-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmoo-perl which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libnamespace-clean-perl which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-smtp-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-perl which isn't installed dpkg: warning: ignoring request to remove libpackage-stash-xs-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libreadonly-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-perl which isn't installed dpkg: warning: ignoring request to remove libref-util-xs-perl which isn't installed dpkg: warning: ignoring request to remove librole-tiny-perl which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libruby2.7 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libset-object-perl which isn't installed dpkg: warning: ignoring request to remove libset-scalar-perl which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsoap-lite-perl which isn't installed dpkg: warning: ignoring request to remove libsort-naturally-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-parseexcel-perl which isn't installed dpkg: warning: ignoring request to remove libspreadsheet-writeexcel-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstrictures-perl which isn't installed dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-identify-perl which isn't installed dpkg: warning: ignoring request to remove libsub-name-perl which isn't installed dpkg: warning: ignoring request to remove libsub-quote-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-graph-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libtask-weaken-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-requiresinternet-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-perl which isn't installed dpkg: warning: ignoring request to remove libtext-csv-xs-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtext-iconv-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtie-ixhash-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtree-dagnode-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libtype-tiny-xs-perl which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libunicode-map-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvariable-magic-perl which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml-dom-perl which isn't installed dpkg: warning: ignoring request to remove libxml-dom-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-filter-buffertext-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-libxslt-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-regexp-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-expat-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-1) ... dpkg: warning: ignoring request to remove libxml-sax-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-writer-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpathengine-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmlrpc-lite-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed Purging configuration files for lynx (2.9.0dev.6-3~deb11u1) ... Purging configuration files for lynx-common (2.9.0dev.6-3~deb11u1) ... dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.69) ... dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.5.23-0+deb11u1) ... Purging configuration files for med-config (3.7) ... Purging configuration files for media-types (4.0.0) ... Purging configuration files for menu (2.1.48) ... dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.7) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (6.3) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove openjdk-11-jdk-headless which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.23+9-1~deb11u1) ... Purging configuration files for openmpi-bin (4.1.0-10) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:8.4p1-5+deb11u3) ... dpkg: warning: while removing openssh-client, directory '/usr/lib/systemd' not empty so not removed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... dpkg: warning: ignoring request to remove pal2nal which isn't installed dpkg: warning: ignoring request to remove paml which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... Purging configuration files for perl-doc (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove pftools which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.10-1) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.4.0-4) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.7 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--purge', 'alsa-topology-conf', 'alsa-ucm-conf', 'amap-align', 'apache2-bin', 'bedtools', 'bioperl', 'bioperl-run', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'clustalo', 'clustalw', 'dbus', 'default-jdk-headless', 'default-jre-headless', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fonts-urw-base35', 'fsa', 'gawk', 'ghostscript', 'graphviz', 'hmmer', 'hyphy-common', 'hyphy-pt', 'ibverbs-providers:amd64', 'infernal', 'java-common', 'javascript-common', 'kalign', 'lagan', 'libace-perl', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libann0', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarray-compare-perl', 'libasound2:amd64', 'libasound2-data', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-endofscope-perl', 'libb-hooks-op-check-perl', 'libbio-asn1-entrezgene-perl', 'libbio-cluster-perl', 'libbio-db-ncbihelper-perl', 'libbio-eutilities-perl', 'libbio-featureio-perl', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbio-tools-run-alignment-clustalw-perl', 'libbio-tools-run-remoteblast-perl', 'libbio-variation-perl', 'libbit-vector-perl', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libcache-cache-perl', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcbor0:amd64', 'libcdt5:amd64', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-bin', 'libfcgi-perl:amd64', 'libfcgi0ldbl:amd64', 'libfido2-1:amd64', 'libfile-listing-perl', 'libfile-slurp-perl', 'libfile-slurp-tiny-perl', 'libfile-sort-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libheap-perl', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'liblab-gamut1:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmime-tools-perl', 'libmldbm-perl', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libnamespace-clean-perl', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpackage-stash-perl', 'libpackage-stash-xs-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-object-perl', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-identify-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsvg-graph-perl', 'libsvg-perl', 'libtask-weaken-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-requiresinternet-perl', 'libtest-warn-perl', 'libtext-csv-perl', 'libtext-csv-xs-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libucx0:amd64', 'libunicode-map-perl', 'liburi-perl', 'libvariable-magic-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl:amd64', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'lynx', 'lynx-common', 'mafft', 'mailcap', 'maq', 'mariadb-common', 'med-config', 'media-types', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'ocl-icd-libopencl1:amd64', 'openjdk-11-jdk-headless:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pal2nal', 'paml', 'perl', 'perl-doc', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'perl-tk', 'pftools', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'publicsuffix', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip'] 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--purge', 'libbio-db-refseq-perl'] 1m51.5s DUMP: dpkg: warning: ignoring request to remove libbio-db-refseq-perl which isn't installed 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--purge', 'libbio-db-refseq-perl'] 1m51.5s INFO: Running scripts post_purge 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_purge_exceptions'] 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_purge_exceptions'] 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--purge', '--pending'] 1m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--purge', '--pending'] 1m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--remove', '--pending'] 1m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg', '--remove', '--pending'] 1m51.6s INFO: Running scripts post_test 1m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_test_exceptions'] 1m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'tmp/scripts/post_test_exceptions'] 1m51.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 1m52.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 1m53.0s DEBUG: No broken symlinks as far as we can find. 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-divert', '--list'] 1m53.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m53.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'dpkg-divert', '--list'] 1m53.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'clean'] 1m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph08sqwz1', 'apt-get', 'clean'] 1m53.1s DEBUG: Recording chroot state 1m53.8s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-noto-mono, fonts-urw-base35, fonts-liberation, fonts-dejavu-core, poppler-data, fonts-lato, fonts-droid-fallback /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/urw-base35/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-noto-mono, fonts-liberation, fonts-dejavu-core, fonts-lato, fonts-droid-fallback /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/type1/ owned by: fonts-urw-base35 /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/type1/urw-base35/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned 1m53.8s INFO: PASS: Installation and purging test. 1m54.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/shm'] 1m54.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/shm'] 1m54.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/console'] 1m54.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/console'] 1m54.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/ptmx'] 1m54.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/ptmx'] 1m54.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/pts'] 1m54.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/dev/pts'] 1m54.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/proc'] 1m54.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph08sqwz1/proc'] 1m54.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 1m54.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph08sqwz1'] 1m54.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph08sqwz1 1m54.6s INFO: PASS: All tests. 1m54.6s INFO: piuparts run ends. ret=0 End: 2024-07-04 20:58:55 GMT