Start: 2024-08-15 20:50:48 GMT Package: nanofilt Version: 2.6.0-3 Installed-Size: 53 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-pandas, python3:any Description: filtering and trimming of long read sequencing data Homepage: https://github.com/wdecoster/nanofilt Description-md5: 998b0e0bc110f38eca7c027373e24307 Section: python Priority: optional Filename: pool/main/n/nanofilt/nanofilt_2.6.0-3_all.deb Size: 10916 MD5sum: 85ad4f5a14f3b723c83a250e27331025 SHA256: 0628b448373593f085d10f490cce7639e0f98c879967e3db16185745d538b16c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt nanofilt=2.6.0-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt nanofilt=2.6.0-3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph6caa3b7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph6caa3b7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph6caa3b7/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s DUMP: e0568dca630aa17b9cacee75afdb778e - 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'clean'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'clean'] 0m3.6s DEBUG: Recording chroot state 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-divert', '--list'] 0m4.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 0m5.8s DEBUG: No broken symlinks as far as we can find. 0m5.8s INFO: Running scripts pre_install 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 0m7.2s DEBUG: No broken symlinks as far as we can find. 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-cache', 'policy'] 0m8.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.10,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-cache', 'policy'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-cache', 'policy', 'nanofilt'] 0m8.1s DUMP: nanofilt: Installed: (none) Candidate: 2.6.0-3 Version table: 2.6.0-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-cache', 'policy', 'nanofilt'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', '-y', 'install', 'nanofilt=2.6.0-3'] 1m24.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-10 dirmngr dpkg-dev fakeroot file fontconfig-config fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-10 gcc gcc-10 gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm javascript-common libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan6 libassuan0 libatomic1 libbinutils libblas3 libblosc1 libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libclang-cpp9 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-fcntllock-perl libfontconfig1 libfreetype6 libgcc-10-dev libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libgpm2 libhdf5-103-1 libicu67 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm9 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnpth0 libnsl-dev libperl5.32 libpfm4 libpipeline1 libpng16-16 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules libsasl2-modules-db libsnappy1v5 libsqlite3-0 libstdc++-10-dev libsz2 libtbb2 libtcl8.6 libtiff5 libtinfo-dev libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-9 llvm-9-dev llvm-9-runtime llvm-9-tools mailcap make manpages manpages-dev media-types mime-support ncbi-blast+ ncbi-data netbase numba-doc openssl patch perl perl-modules-5.32 pinentry-curses python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-pip-whl python-tables-data python3 python3-attr python3-biopython python3-bottleneck python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-html5lib python3-importlib-metadata python3-iniconfig python3-jdcal python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pkg-resources python3-pluggy python3-py python3-pygments python3-pyparsing python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-toml python3-tz python3-webencodings python3-wheel python3-xlwt python3-yaml python3-zipp python3.9 python3.9-dev python3.9-minimal readline-common sensible-utils sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xz-utils zlib1g-dev Suggested packages: binutils-doc blt-demo bzip2-doc cpp-doc gcc-10-locales dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre g++-multilib g++-10-multilib gcc-10-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-10-multilib parcimonie xloadimage scdaemon apache2 | lighttpd | httpd glibc-doc git bzr libgd-tools gdbm-l10n gpm libjs-jquery-ui-docs liblcms2-utils ncurses-doc libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libstdc++-10-doc tcl8.6 tk8.6 llvm-9-doc make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl pinentry-doc python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml python-bottleneck-doc python-cycler-doc python3-genshi python-jinja2-doc llvmlite-doc python3-lxml-dbg python-lxml-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft nvidia-cuda-toolkit gfortran python-numpy-doc python3-numpy-dbg python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg subversion python-pygments-doc python-pyparsing-doc python3-renderpm-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc python3-netcdf4 python-tables-doc vitables tix python3-tk-dbg python3-xlrd python-xlrt-doc python3.9-venv python3.9-doc readline-doc The following NEW packages will be installed: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-10 dirmngr dpkg-dev fakeroot file fontconfig-config fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-10 gcc gcc-10 gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm javascript-common libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan6 libassuan0 libatomic1 libbinutils libblas3 libblosc1 libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libclang-cpp9 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-fcntllock-perl libfontconfig1 libfreetype6 libgcc-10-dev libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libgpm2 libhdf5-103-1 libicu67 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm9 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnpth0 libnsl-dev libperl5.32 libpfm4 libpipeline1 libpng16-16 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules libsasl2-modules-db libsnappy1v5 libsqlite3-0 libstdc++-10-dev libsz2 libtbb2 libtcl8.6 libtiff5 libtinfo-dev libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-9 llvm-9-dev llvm-9-runtime llvm-9-tools mailcap make manpages manpages-dev media-types mime-support nanofilt ncbi-blast+ ncbi-data netbase numba-doc openssl patch perl perl-modules-5.32 pinentry-curses python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-pip-whl python-tables-data python3 python3-attr python3-biopython python3-bottleneck python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-html5lib python3-importlib-metadata python3-iniconfig python3-jdcal python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pkg-resources python3-pluggy python3-py python3-pygments python3-pyparsing python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-toml python3-tz python3-webencodings python3-wheel python3-xlwt python3-yaml python3-zipp python3.9 python3.9-dev python3.9-minimal readline-common sensible-utils sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xz-utils zlib1g-dev 0 upgraded, 250 newly installed, 0 to remove and 0 not upgraded. Need to get 263 MB of archives. After this operation, 1100 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 manpages all 5.10-1 [1412 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 xz-utils amd64 5.2.5-2.1~deb11u1 [220 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 binfmt-support amd64 2.2.1-1+deb11u1 [66.8 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 binutils-common amd64 2.35.2-2 [2220 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libbinutils amd64 2.35.2-2 [570 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libctf-nobfd0 amd64 2.35.2-2 [110 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libctf0 amd64 2.35.2-2 [53.2 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 binutils-x86-64-linux-gnu amd64 2.35.2-2 [1809 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 binutils amd64 2.35.2-2 [61.2 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u10 [276 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.218-1 [1728 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u10 [2362 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libisl23 amd64 0.23-1 [676 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libmpc3 amd64 1.2.0-1 [45.0 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 cpp-10 amd64 10.2.1-6 [8528 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 cpp amd64 4:10.2.1-1 [19.7 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libcc1-0 amd64 10.2.1-6 [47.0 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:81 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 gcc-10 amd64 10.2.1-6 [17.0 MB] Get:88 http://deb.debian.org/debian bullseye/main amd64 gcc amd64 4:10.2.1-1 [5192 B] Get:89 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:92 http://deb.debian.org/debian bullseye/main amd64 make amd64 4.3-4.1 [396 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libdpkg-perl all 1.20.13 [1552 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 patch amd64 2.7.6-7 [128 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 dpkg-dev all 1.20.13 [2314 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 build-essential amd64 12.9 [7704 B] Get:97 http://deb.debian.org/debian bullseye/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 gpgconf amd64 2.2.27-2+deb11u2 [548 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libksba8 amd64 1.5.0-3+deb11u2 [123 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libnpth0 amd64 1.6-3 [19.0 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 dirmngr amd64 2.2.27-2+deb11u2 [763 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 gnupg-l10n all 2.2.27-2+deb11u2 [1086 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 gnupg-utils amd64 2.2.27-2+deb11u2 [905 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 gpg amd64 2.2.27-2+deb11u2 [928 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 pinentry-curses amd64 1.1.0-4 [64.9 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 gpg-agent amd64 2.2.27-2+deb11u2 [669 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-client amd64 2.2.27-2+deb11u2 [524 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-server amd64 2.2.27-2+deb11u2 [516 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 gpgsm amd64 2.2.27-2+deb11u2 [645 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 gnupg all 2.2.27-2+deb11u2 [825 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 javascript-common all 11+nmu1 [6260 B] Get:119 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-xs-perl amd64 0.04-6+b1 [12.0 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libblosc1 amd64 1.20.1+ds1-2 [48.7 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libc-devtools amd64 2.31-13+deb11u10 [246 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 libllvm9 amd64 1:9.0.1-16.1 [14.9 MB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libclang-cpp9 amd64 1:9.0.1-16.1 [8421 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libffi-dev amd64 3.3-6 [56.5 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 libfile-fcntllock-perl amd64 0.22-3+b7 [35.5 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libgpm2 amd64 1.20.7-8 [35.6 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:144 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libldap-common all 2.4.57+dfsg-3+deb11u1 [95.8 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libncurses-dev amd64 6.2+20201114-2+deb11u2 [344 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libpfm4 amd64 4.11.1+git32-gd0b85fb-1 [286 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules amd64 2.1.27+dfsg-2.1+deb11u1 [104 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libtinfo-dev amd64 6.2+20201114-2+deb11u2 [940 B] Get:169 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 libz3-dev amd64 4.8.10-1 [90.8 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 llvm-9-runtime amd64 1:9.0.1-16.1 [213 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 llvm-9 amd64 1:9.0.1-16.1 [4851 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 llvm-9-tools amd64 1:9.0.1-16.1 [330 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 llvm-9-dev amd64 1:9.0.1-16.1 [24.4 MB] Get:182 http://deb.debian.org/debian bullseye/main amd64 manpages-dev all 5.10-1 [2309 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u2 [446 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 nanofilt all 2.6.0-3 [10.9 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:196 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 numba-doc all 0.52.0-4 [756 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 python-biopython-doc all 1.78+dfsg-4 [15.0 MB] Get:199 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 python-odf-doc all 1.4.1-1 [244 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 python3-defusedxml all 0.6.0-2 [38.2 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 python3-odf all 1.4.1-1 [79.7 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 python-odf-tools all 1.4.1-1 [29.8 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 python-pip-whl all 20.3.4-4+deb11u1 [1948 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 python-tables-data all 3.6.1-3 [53.1 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 python3-bottleneck amd64 1.2.1+ds1-2+b4 [77.3 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 python3-soupsieve all 2.2.1-1 [34.7 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 python3-bs4 all 4.9.3-1 [112 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:212 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:219 http://deb.debian.org/debian bullseye/main amd64 python3-webencodings all 0.5.1-2 [11.0 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 python3-html5lib all 1.1-3 [93.0 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:223 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get:225 http://deb.debian.org/debian bullseye/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get:226 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 python3-llvmlite amd64 0.35.0-3 [120 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 python3-lxml amd64 4.6.3+dfsg-0.1+deb11u1 [1093 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:234 http://deb.debian.org/debian bullseye/main amd64 python3-numba amd64 0.52.0-4 [1515 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 python3-numexpr amd64 2.7.2-2 [144 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 python3-openpyxl all 3.0.3-1 [159 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 python3-wheel all 0.34.2-1 [24.0 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 python3-pip all 20.3.4-4+deb11u1 [337 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 python3-renderpm amd64 3.5.59-2 [80.0 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 python3-tables-lib amd64 3.6.1-3 [394 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 python3-tables all 3.6.1-3 [342 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 python3-xlwt all 1.3.0-3 [86.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 263 MB in 3s (85.5 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking python3-tables-lib (3.6.1-3) ... Selecting previously unselected package python3-tables. Preparing to unpack .../225-python3-tables_3.6.1-3_all.deb ... Unpacking python3-tables (3.6.1-3) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../226-python3-tk_3.9.2-1_amd64.deb ... Unpacking python3-tk:amd64 (3.9.2-1) ... Selecting previously unselected package python3-xlwt. Preparing to unpack .../227-python3-xlwt_1.3.0-3_all.deb ... Unpacking python3-xlwt (1.3.0-3) ... Setting up libksba8:amd64 (1.5.0-3+deb11u2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up javascript-common (11+nmu1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up fonts-lato (2.0-2.1) ... Setting up libgpm2:amd64 (1.20.7-8) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up manpages (5.10-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libtbb2:amd64 (2020.3-1) ... Setting up binutils-common:amd64 (2.35.2-2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.39-3+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up linux-libc-dev:amd64 (5.10.218-1) ... Setting up libctf-nobfd0:amd64 (2.35.2-2) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up file (1:5.39-3+deb11u1) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up bzip2 (1.0.8-4) ... Setting up libffi-dev:amd64 (3.3-6) ... Setting up libldap-common (2.4.57+dfsg-3+deb11u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up libasan6:amd64 (10.2.1-6) ... Setting up libsnappy1v5:amd64 (1.1.8-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Setting up libpfm4:amd64 (4.11.1+git32-gd0b85fb-1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up make (4.3-4.1) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up gnupg-l10n (2.2.27-2+deb11u2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up xz-utils (5.2.5-2.1~deb11u1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libmpc3:amd64 (1.2.0-1) ... Setting up libatomic1:amd64 (10.2.1-6) ... Setting up patch (2.7.6-7) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up binfmt-support (2.2.1-1+deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libubsan1:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up python-biopython-doc (1.78+dfsg-4) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libblosc1 (1.20.1+ds1-2) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up netbase (6.3) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libbinutils:amd64 (2.35.2-2) ... Setting up libisl23:amd64 (0.23-1) ... Setting up libc-dev-bin (2.31-13+deb11u10) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up python-tables-data (3.6.1-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up libcc1-0:amd64 (10.2.1-6) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up liblsan0:amd64 (10.2.1-6) ... Setting up cpp-10 (10.2.1-6) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libctf0:amd64 (2.35.2-2) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libz3-dev:amd64 (4.8.10-1) ... Setting up manpages-dev (5.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up python-odf-doc (1.4.1-1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up cpp (4:10.2.1-1) ... Setting up libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Setting up gpgconf (2.2.27-2+deb11u2) ... Setting up libc6-dev:amd64 (2.31-13+deb11u10) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up python-pip-whl (20.3.4-4+deb11u1) ... Setting up numba-doc (0.52.0-4) ... Setting up libllvm9:amd64 (1:9.0.1-16.1) ... Setting up gpg (2.2.27-2+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up gnupg-utils (2.2.27-2+deb11u2) ... Setting up binutils-x86-64-linux-gnu (2.35.2-2) ... Setting up libncurses-dev:amd64 (6.2+20201114-2+deb11u2) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up gpg-agent (2.2.27-2+deb11u2) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libclang-cpp9 (1:9.0.1-16.1) ... Setting up gpgsm (2.2.27-2+deb11u2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up binutils (2.35.2-2) ... Setting up dirmngr (2.2.27-2+deb11u2) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up llvm-9-runtime (1:9.0.1-16.1) ... Setting up gcc-10 (10.2.1-6) ... Setting up libdpkg-perl (1.20.13) ... Setting up gpg-wks-server (2.2.27-2+deb11u2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up libtinfo-dev:amd64 (6.2+20201114-2+deb11u2) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up g++-10 (10.2.1-6) ... Setting up mime-support (3.66) ... Setting up gpg-wks-client (2.2.27-2+deb11u2) ... Setting up libfile-fcntllock-perl (0.22-3+b7) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-webencodings (0.5.1-2) ... Setting up python3-tz (2021.1-1) ... Setting up gcc (4:10.2.1-1) ... Setting up dpkg-dev (1.20.13) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up llvm-9 (1:9.0.1-16.1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.59-2) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-xlwt (1.3.0-3) ... Setting up python3-html5lib (1.1-3) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up gnupg (2.2.27-2+deb11u2) ... Setting up build-essential (12.9) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up libalgorithm-diff-xs-perl (0.04-6+b1) ... Setting up python3-soupsieve (2.2.1-1) ... Setting up libc-devtools (2.31-13+deb11u10) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-renderpm:amd64 (3.5.59-2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-defusedxml (0.6.0-2) ... Setting up python3-olefile (0.46-3) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-bs4 (4.9.3-1) ... Setting up python3-llvmlite (0.35.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-openpyxl (3.0.3-1) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-pip (20.3.4-4+deb11u1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-odf (1.4.1-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up llvm-9-tools (1:9.0.1-16.1) ... Setting up llvm-9-dev (1:9.0.1-16.1) ... Setting up python3-tables-lib (3.6.1-3) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python-odf-tools (1.4.1-1) ... Setting up python3-numba (0.52.0-4) ... update-alternatives: using /usr/share/python3-numba/numba to provide /usr/bin/numba (numba) in auto mode Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-bottleneck (1.2.1+ds1-2+b4) ... Setting up python3-numexpr (2.7.2-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-tables (3.6.1-3) ... Setting up nanofilt (2.6.0-3) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', '-y', 'install', 'nanofilt=2.6.0-3'] 1m24.8s INFO: Running scripts post_install 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_install_exceptions'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_install_exceptions'] 1m24.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 1m27.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 1m30.4s ERROR: WARN: Broken symlinks: /usr/share/man/man3/LIST_REMOVE.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_NEXT.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_HEAD.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_BEFORE.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_AFTER.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INIT.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_HEAD_INITIALIZER.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_HEAD.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_FOREACH.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_FIRST.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_ENTRY.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_EMPTY.3 -> list.3 (manpages-dev) /usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd (python3-biopython) 1m30.4s INFO: /bin converted to /usr/bin by /usr merge 1m30.4s INFO: /lib converted to /usr/lib by /usr merge 1m30.4s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m30.4s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m30.4s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m30.4s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m30.4s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m30.4s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m30.4s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m30.4s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m30.4s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m30.4s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m30.4s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m30.4s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m30.4s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m30.4s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m30.4s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m30.4s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m30.4s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m30.4s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m30.4s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m30.4s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m30.4s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m30.4s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m30.4s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m30.4s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m30.4s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m30.4s INFO: /sbin converted to /usr/sbin by /usr merge 1m32.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', '-ac', '--ignore-obsolete'] 1m38.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', '-ac', '--ignore-obsolete'] 1m38.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m38.0s DUMP: 0.15.6 1m38.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m38.0s INFO: Running adequate version 0.15.6 now. 1m38.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'nanofilt'] 1m38.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'nanofilt'] 1m38.2s INFO: Running scripts pre_remove 1m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m38.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m38.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_exceptions'] 1m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/pre_remove_exceptions'] 1m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m46.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed binfmt-support binfmt-support 2.2.1-1+deb11u1 install ok installed binutils binutils 2.35.2-2 install ok installed binutils-common:amd64 binutils-common 2.35.2-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.35.2-2 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed build-essential build-essential 12.9 install ok installed bzip2 bzip2 1.0.8-4 install ok installed ca-certificates ca-certificates 20210119 install ok installed coreutils coreutils 8.32-4+b1 install ok installed cpp cpp 4:10.2.1-1 install ok installed cpp-10 cpp-10 10.2.1-6 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dirmngr dirmngr 2.2.27-2+deb11u2 install ok installed dpkg dpkg 1.20.13 install ok installed dpkg-dev dpkg-dev 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed fakeroot fakeroot 1.25.3-1.1 install ok installed file file 1:5.39-3+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-lyx fonts-lyx 2.3.6-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed g++ g++ 4:10.2.1-1 install ok installed g++-10 g++-10 10.2.1-6 install ok installed gcc gcc 4:10.2.1-1 install ok installed gcc-10 gcc-10 10.2.1-6 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gnupg gnupg 2.2.27-2+deb11u2 install ok installed gnupg-l10n gnupg-l10n 2.2.27-2+deb11u2 install ok installed gnupg-utils gnupg-utils 2.2.27-2+deb11u2 install ok installed gpg gpg 2.2.27-2+deb11u2 install ok installed gpg-agent gpg-agent 2.2.27-2+deb11u2 install ok installed gpg-wks-client gpg-wks-client 2.2.27-2+deb11u2 install ok installed gpg-wks-server gpg-wks-server 2.2.27-2+deb11u2 install ok installed gpgconf gpgconf 2.2.27-2+deb11u2 install ok installed gpgsm gpgsm 2.2.27-2+deb11u2 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libaec0:amd64 libaec0 1.0.4-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-6+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libasan6:amd64 libasan6 10.2.1-6 install ok installed libassuan0:amd64 libassuan0 2.5.3-7.1 install ok installed libatomic1:amd64 libatomic1 10.2.1-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libbinutils:amd64 libbinutils 2.35.2-2 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libblosc1 libblosc1 1.20.1+ds1-2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc-dev-bin libc-dev-bin 2.31-13+deb11u10 install ok installed libc-devtools libc-devtools 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libc6-dev:amd64 libc6-dev 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcc1-0:amd64 libcc1-0 10.2.1-6 install ok installed libclang-cpp9 libclang-cpp9 1:9.0.1-16.1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.18-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.35.2-2 install ok installed libctf0:amd64 libctf0 2.35.2-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libdpkg-perl libdpkg-perl 1.20.13 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfakeroot:amd64 libfakeroot 1.25.3-1.1 install ok installed libffi-dev:amd64 libffi-dev 3.3-6 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b7 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.2.1-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-8 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-4+deb11u1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libisl23:amd64 libisl23 0.23-1 install ok installed libitm1:amd64 libitm1 10.2.1-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-8+deb11u2 install ok installed libjs-sphinxdoc libjs-sphinxdoc 3.4.3-2 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed libksba8:amd64 libksba8 1.5.0-3+deb11u2 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-9 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-common libldap-common 2.4.57+dfsg-3+deb11u1 install ok installed libllvm9:amd64 libllvm9 1:9.0.1-16.1 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-4+b1 install ok installed liblsan0:amd64 liblsan0 10.2.1-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-2 install ok installed libmagic-mgc libmagic-mgc 1:5.39-3+deb11u1 install ok installed libmagic1:amd64 libmagic1 1:5.39-3+deb11u1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpc3:amd64 libmpc3 1.2.0-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libncurses-dev:amd64 libncurses-dev 6.2+20201114-2+deb11u2 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnpth0:amd64 libnpth0 1.6-3 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpfm4:amd64 libpfm4 4.11.1+git32-gd0b85fb-1 install ok installed libpipeline1:amd64 libpipeline1 1.5.3-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpython3-dev:amd64 libpython3-dev 3.9.2-3 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9:amd64 libpython3.9 3.9.2-1 install ok installed libpython3.9-dev:amd64 libpython3.9-dev 3.9.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.8-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.2.1-6 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.11+dfsg-1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtinfo-dev:amd64 libtinfo-dev 6.2+20201114-2+deb11u2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtk8.6:amd64 libtk8.6 8.6.11-2 install ok installed libtsan0:amd64 libtsan0 10.2.1-6 install ok installed libubsan1:amd64 libubsan1 10.2.1-6 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2.1+deb11u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2.1+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.34-4+deb11u1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libz3-4:amd64 libz3-4 4.8.10-1 install ok installed libz3-dev:amd64 libz3-dev 4.8.10-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.10.218-1 install ok installed llvm-9 llvm-9 1:9.0.1-16.1 install ok installed llvm-9-dev llvm-9-dev 1:9.0.1-16.1 install ok installed llvm-9-runtime llvm-9-runtime 1:9.0.1-16.1 install ok installed llvm-9-tools llvm-9-tools 1:9.0.1-16.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed make make 4.3-4.1 install ok installed manpages manpages 5.10-1 install ok installed manpages-dev manpages-dev 5.10-1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed nanofilt nanofilt 2.6.0-3 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed netbase netbase 6.3 install ok installed numba-doc numba-doc 0.52.0-4 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed patch patch 2.7.6-7 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed pinentry-curses pinentry-curses 1.1.0-4 install ok installed python-biopython-doc python-biopython-doc 1.78+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.3.4-1 install ok installed python-odf-doc python-odf-doc 1.4.1-1 install ok installed python-odf-tools python-odf-tools 1.4.1-1 install ok installed python-pip-whl python-pip-whl 20.3.4-4+deb11u1 install ok installed python-tables-data python-tables-data 3.6.1-3 install ok installed python3 python3 3.9.2-3 install ok installed python3-attr python3-attr 20.3.0-1 install ok installed python3-biopython python3-biopython 1.78+dfsg-4 install ok installed python3-bottleneck python3-bottleneck 1.2.1+ds1-2+b4 install ok installed python3-bs4 python3-bs4 4.9.3-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-cycler python3-cycler 0.10.0-3 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-decorator python3-decorator 4.4.2-2 install ok installed python3-defusedxml python3-defusedxml 0.6.0-2 install ok installed python3-dev python3-dev 3.9.2-3 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-html5lib python3-html5lib 1.1-3 install ok installed python3-importlib-metadata python3-importlib-metadata 1.6.0-2 install ok installed python3-iniconfig python3-iniconfig 1.1.1-1 install ok installed python3-jdcal python3-jdcal 1.0-1.3 install ok installed python3-jinja2 python3-jinja2 2.11.3-1 install ok installed python3-kiwisolver python3-kiwisolver 1.3.1-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-llvmlite python3-llvmlite 0.35.0-3 install ok installed python3-lxml:amd64 python3-lxml 4.6.3+dfsg-0.1+deb11u1 install ok installed python3-markupsafe python3-markupsafe 1.1.1-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.3.4-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-more-itertools python3-more-itertools 4.2.0-3 install ok installed python3-numba python3-numba 0.52.0-4 install ok installed python3-numexpr python3-numexpr 2.7.2-2 install ok installed python3-numpy python3-numpy 1:1.19.5-1 install ok installed python3-odf python3-odf 1.4.1-1 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openpyxl python3-openpyxl 3.0.3-1 install ok installed python3-packaging python3-packaging 20.9-2 install ok installed python3-pandas python3-pandas 1.1.5+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.1.5+dfsg-2 install ok installed python3-pil:amd64 python3-pil 8.1.2+dfsg-0.3+deb11u2 install ok installed python3-pip python3-pip 20.3.4-4+deb11u1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-pluggy python3-pluggy 0.13.0-6 install ok installed python3-py python3-py 1.10.0-1 install ok installed python3-pygments python3-pygments 2.7.1+dfsg-2.1 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-pytest python3-pytest 6.0.2-2 install ok installed python3-renderpm:amd64 python3-renderpm 3.5.59-2 install ok installed python3-reportlab python3-reportlab 3.5.59-2 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.59-2 install ok installed python3-scipy python3-scipy 1.6.0-2 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-soupsieve python3-soupsieve 2.2.1-1 install ok installed python3-tables python3-tables 3.6.1-3 install ok installed python3-tables-lib python3-tables-lib 3.6.1-3 install ok installed python3-tk:amd64 python3-tk 3.9.2-1 install ok installed python3-toml python3-toml 0.10.1-1 install ok installed python3-tz python3-tz 2021.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-2 install ok installed python3-wheel python3-wheel 0.34.2-1 install ok installed python3-xlwt python3-xlwt 1.3.0-3 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3-zipp python3-zipp 1.0.0-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-dev python3.9-dev 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.5.1+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed x11-common x11-common 1:7.7+22 install ok installed xz-utils xz-utils 5.2.5-2.1~deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-2+deb11u2 1m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'remove', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-10', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-10', 'gcc', 'gcc-10', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan6:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp9', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhdf5-103-1:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'pinentry-curses', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'readline-common', 'sensible-utils', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils', 'zlib1g-dev:amd64', 'nanofilt'] 1m56.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binfmt-support binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 ca-certificates cpp cpp-10 dirmngr dpkg-dev fakeroot file fontconfig-config fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-10 gcc gcc-10 gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm javascript-common libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan6 libassuan0 libatomic1 libbinutils libblas3 libblosc1 libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6-dev libcc1-0 libclang-cpp9 libcrypt-dev libctf-nobfd0 libctf0 libdeflate0 libdpkg-perl libedit2 libexpat1 libexpat1-dev libfakeroot libffi-dev libfile-fcntllock-perl libfontconfig1 libfreetype6 libgcc-10-dev libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libgpm2 libhdf5-103-1 libicu67 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libksba8 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm9 liblmdb0 liblocale-gettext-perl liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses6 libncursesw6 libnpth0 libnsl-dev libperl5.32 libpfm4 libpipeline1 libpng16-16 libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules libsasl2-modules-db libsnappy1v5 libsqlite3-0 libstdc++-10-dev libsz2 libtbb2 libtcl8.6 libtiff5 libtinfo-dev libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxpm4 libxrender1 libxslt1.1 libxss1 libyaml-0-2 libz3-4 libz3-dev linux-libc-dev llvm-9 llvm-9-dev llvm-9-runtime llvm-9-tools mailcap make manpages manpages-dev media-types mime-support nanofilt ncbi-blast+ ncbi-data netbase numba-doc openssl patch perl perl-modules-5.32 pinentry-curses python-biopython-doc python-matplotlib-data python-odf-doc python-odf-tools python-pip-whl python-tables-data python3 python3-attr python3-biopython python3-bottleneck python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-distutils python3-et-xmlfile python3-html5lib python3-importlib-metadata python3-iniconfig python3-jdcal python3-jinja2 python3-kiwisolver python3-lib2to3 python3-llvmlite python3-lxml python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-numba python3-numexpr python3-numpy python3-odf python3-olefile python3-openpyxl python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pip python3-pkg-resources python3-pluggy python3-py python3-pygments python3-pyparsing python3-pytest python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-toml python3-tz python3-webencodings python3-wheel python3-xlwt python3-yaml python3-zipp python3.9 python3.9-dev python3.9-minimal readline-common sensible-utils sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xz-utils zlib1g-dev 0 upgraded, 0 newly installed, 250 to remove and 0 not upgraded. After this operation, 1100 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 31861 files and directories currently installed.) Removing llvm-9-dev (1:9.0.1-16.1) ... Removing python3-numba (0.52.0-4) ... Removing python3-llvmlite (0.35.0-3) ... Removing llvm-9 (1:9.0.1-16.1) ... Removing llvm-9-runtime (1:9.0.1-16.1) ... Removing binfmt-support (2.2.1-1+deb11u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing build-essential (12.9) ... Removing g++ (4:10.2.1-1) ... Removing gcc (4:10.2.1-1) ... Removing dpkg-dev (1.20.13) ... Removing python3-tk:amd64 (3.9.2-1) ... Removing blt (2.5.3+dfsg-4.1) ... Removing bzip2 (1.0.8-4) ... Removing python3-pip (20.3.4-4+deb11u1) ... Removing python-pip-whl (20.3.4-4+deb11u1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:10.2.1-1) ... Removing gnupg (2.2.27-2+deb11u2) ... Removing gpg-wks-client (2.2.27-2+deb11u2) ... Removing dirmngr (2.2.27-2+deb11u2) ... Removing fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-tcp to provide /usr/bin/fakeroot (fakeroot) in auto mode Removing file (1:5.39-3+deb11u1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libtk8.6:amd64 (8.6.11-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libc-devtools (2.31-13+deb11u10) ... Removing libgd3:amd64 (2.3.0-2) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing numba-doc (0.52.0-4) ... Removing sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.0-2.1) ... Removing python3-matplotlib (3.3.4-1) ... Removing python-matplotlib-data (3.3.4-1) ... Removing fonts-lyx (2.3.6-1) ... Removing python3-renderpm:amd64 (3.5.59-2) ... Removing fonts-urw-base35 (20200910-1) ... Removing g++-10 (10.2.1-6) ... Removing gnupg-l10n (2.2.27-2+deb11u2) ... Removing gnupg-utils (2.2.27-2+deb11u2) ... Removing gpg-wks-server (2.2.27-2+deb11u2) ... Removing gpg (2.2.27-2+deb11u2) ... Removing gpg-agent (2.2.27-2+deb11u2) ... Removing gpgsm (2.2.27-2+deb11u2) ... Removing gpgconf (2.2.27-2+deb11u2) ... Removing javascript-common (11+nmu1) ... Removing python3-tables (3.6.1-3) ... Removing python3-tables-lib (3.6.1-3) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing libalgorithm-merge-perl (0.08-3) ... Removing libalgorithm-diff-xs-perl (0.04-6+b1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libstdc++-10-dev:amd64 (10.2.1-6) ... Removing pinentry-curses (1.1.0-4) ... Removing libassuan0:amd64 (2.5.3-7.1) ... Removing python3-scipy (1.6.0-2) ... Removing nanofilt (2.6.0-3) ... Removing python3-biopython (1.78+dfsg-4) ... Removing python3-pandas (1.1.5+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Removing python3-numexpr (2.7.2-2) ... Removing python3-bottleneck (1.2.1+ds1-2+b4) ... Removing python3-numpy (1:1.19.5-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing libblosc1 (1.20.1+ds1-2) ... Removing python3-reportlab (3.5.59-2) ... Removing python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u2) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libclang-cpp9 (1:9.0.1-16.1) ... Removing libllvm9:amd64 (1:9.0.1-16.1) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing python3-dev (3.9.2-3) ... Removing python3.9-dev (3.9.2-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Removing libtinfo-dev:amd64 (6.2+20201114-2+deb11u2) ... Removing libncurses-dev:amd64 (6.2+20201114-2+deb11u2) ... Removing libpython3-dev:amd64 (3.9.2-3) ... Removing libpython3.9-dev:amd64 (3.9.2-1) ... Removing libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Removing libc6-dev:amd64 (2.31-13+deb11u10) ... Removing libc-dev-bin (2.31-13+deb11u10) ... Removing libcrypt-dev:amd64 (1:4.4.18-4) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libdpkg-perl (1.20.13) ... Removing llvm-9-tools (1:9.0.1-16.1) ... Removing python3-yaml (5.3.1-5) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-distutils (3.9.2-1) ... Removing libfakeroot:amd64 (1.25.3-1.1) ... Removing libffi-dev:amd64 (3.3-6) ... Removing libfile-fcntllock-perl (0.22-3+b7) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libgpm2:amd64 (1.20.7-8) ... Removing python3-openpyxl (3.0.3-1) ... Removing python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Removing libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libjs-sphinxdoc (3.4.3-2) ... Removing python-odf-doc (1.4.1-1) ... Removing libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Removing libjs-underscore (1.9.1~dfsg-3) ... Removing libksba8:amd64 (1.5.0-3+deb11u2) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-common (2.4.57+dfsg-3+deb11u1) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing liblocale-gettext-perl (1.07-4+b1) ... Removing liblzo2-2:amd64 (2.10-2) ... Removing libmagic1:amd64 (1:5.39-3+deb11u1) ... Removing libmagic-mgc (1:5.39-3+deb11u1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnpth0:amd64 (1.6-3) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libpfm4:amd64 (4.11.1+git32-gd0b85fb-1) ... Removing libpipeline1:amd64 (1.5.3-1) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libpython3.9:amd64 (3.9.2-1) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsnappy1v5:amd64 (1.1.8-1) ... Removing libtbb2:amd64 (2020.3-1) ... Removing libtcl8.6:amd64 (8.6.11+dfsg-1) ... Removing libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Removing libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing libz3-dev:amd64 (4.8.10-1) ... Removing libz3-4:amd64 (4.8.10-1) ... Removing linux-libc-dev:amd64 (5.10.218-1) ... Removing make (4.3-4.1) ... Removing manpages-dev (5.10-1) ... Removing manpages (5.10-1) ... Removing ncbi-data (6.1.20170106+dfsg1-9) ... Removing netbase (6.3) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing patch (2.7.6-7) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python-biopython-doc (1.78+dfsg-4) ... Removing python-odf-tools (1.4.1-1) ... Removing python-tables-data (3.6.1-3) ... Removing python3-pytest (6.0.2-2) ... Removing python3-attr (20.3.0-1) ... Removing python3-bs4 (4.9.3-1) ... Removing python3-chardet (4.0.0-1) ... Removing python3-cycler (0.10.0-3) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-decorator (4.4.2-2) ... Removing python3-odf (1.4.1-1) ... Removing python3-defusedxml (0.6.0-2) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-html5lib (1.1-3) ... Removing python3-pluggy (0.13.0-6) ... Removing python3-importlib-metadata (1.6.0-2) ... Removing python3-iniconfig (1.1.1-1) ... Removing python3-jdcal (1.0-1.3) ... Removing python3-jinja2 (2.11.3-1) ... Removing python3-kiwisolver (1.3.1-1+b1) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-markupsafe (1.1.1-1+b3) ... Removing python3-zipp (1.0.0-3) ... Removing python3-more-itertools (4.2.0-3) ... Removing python3-olefile (0.46-3) ... Removing python3-packaging (20.9-2) ... Removing python3-py (1.10.0-1) ... Removing python3-pygments (2.7.1+dfsg-2.1) ... Removing python3-pkg-resources (52.0.0-4) ... Removing python3-pyparsing (2.4.7-1) ... Removing python3-reportlab-accel:amd64 (3.5.59-2) ... Removing python3-six (1.16.0-2) ... Removing python3-soupsieve (2.2.1-1) ... Removing python3-toml (0.10.1-1) ... Removing python3-tz (2021.1-1) ... Removing python3-webencodings (0.5.1-2) ... Removing python3-wheel (0.34.2-1) ... Removing python3-xlwt (1.3.0-3) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ttf-bitstream-vera (1.10-8.1) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xz-utils (5.2.5-2.1~deb11u1) ... Removing gcc-10 (10.2.1-6) ... Removing binutils (2.35.2-2) ... Removing binutils-x86-64-linux-gnu (2.35.2-2) ... Removing libctf0:amd64 (2.35.2-2) ... Removing libbinutils:amd64 (2.35.2-2) ... Removing binutils-common:amd64 (2.35.2-2) ... Removing cpp-10 (10.2.1-6) ... Removing libgcc-10-dev:amd64 (10.2.1-6) ... Removing libasan6:amd64 (10.2.1-6) ... Removing libatomic1:amd64 (10.2.1-6) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libcc1-0:amd64 (10.2.1-6) ... Removing libctf-nobfd0:amd64 (2.35.2-2) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libgomp1:amd64 (10.2.1-6) ... Removing libisl23:amd64 (0.23-1) ... Removing libitm1:amd64 (10.2.1-6) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing liblsan0:amd64 (10.2.1-6) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libmpc3:amd64 (1.2.0-1) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing libreadline8:amd64 (8.1-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libtsan0:amd64 (10.2.1-6) ... Removing libubsan1:amd64 (10.2.1-6) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Processing triggers for libc-bin (2.31-13+deb11u10) ... 1m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'remove', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-10', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-10', 'gcc', 'gcc-10', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan6:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp9', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhdf5-103-1:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'pinentry-curses', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'readline-common', 'sensible-utils', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils', 'zlib1g-dev:amd64', 'nanofilt'] 1m56.9s INFO: Running scripts post_remove 1m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_remove_exceptions'] 1m56.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_remove_exceptions'] 1m56.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--purge', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-10', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-10', 'gcc', 'gcc-10', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan6:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp9', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhdf5-103-1:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'pinentry-curses', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'readline-common', 'sensible-utils', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils', 'zlib1g-dev:amd64'] 1m58.2s DUMP: (Reading database ... 6737 files and directories currently installed.) Purging configuration files for binfmt-support (2.2.1-1+deb11u1) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-10 which isn't installed Purging configuration files for dirmngr (2.2.27-2+deb11u2) ... Purging configuration files for dpkg-dev (1.20.13) ... dpkg: warning: ignoring request to remove fakeroot which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-1) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-10 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-10 which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.27-2+deb11u2) ... dpkg: warning: while removing gpg-agent, directory '/usr/lib/systemd' not empty so not removed dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpg-wks-server which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libasan6 which isn't installed dpkg: warning: ignoring request to remove libassuan0 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc-devtools which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libclang-cpp9 which isn't installed dpkg: warning: ignoring request to remove libcrypt-dev which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed Purging configuration files for libfakeroot:amd64 (1.25.3-1.1) ... dpkg: warning: ignoring request to remove libffi-dev which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgcc-10-dev which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libksba8 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.57+dfsg-3+deb11u1) ... dpkg: warning: ignoring request to remove libllvm9 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblocale-gettext-perl which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.39-3+deb11u1) ... dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncurses-dev which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnpth0 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpfm4 which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.9 which isn't installed dpkg: warning: ignoring request to remove libpython3.9-dev which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed Purging configuration files for libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-10-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtinfo-dev which isn't installed dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove libz3-dev which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove llvm-9 which isn't installed dpkg: warning: ignoring request to remove llvm-9-dev which isn't installed dpkg: warning: ignoring request to remove llvm-9-runtime which isn't installed dpkg: warning: ignoring request to remove llvm-9-tools which isn't installed Purging configuration files for mailcap (3.69) ... dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... Purging configuration files for netbase (6.3) ... dpkg: warning: ignoring request to remove numba-doc which isn't installed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.3.4-1) ... dpkg: warning: ignoring request to remove python-odf-doc which isn't installed dpkg: warning: ignoring request to remove python-odf-tools which isn't installed dpkg: warning: ignoring request to remove python-pip-whl which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bottleneck which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-iniconfig which isn't installed dpkg: warning: ignoring request to remove python3-jdcal which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-llvmlite which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-numba which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-odf which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pip which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-xlwt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed dpkg: warning: ignoring request to remove python3.9-dev which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--purge', 'binfmt-support', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'ca-certificates', 'cpp', 'cpp-10', 'dirmngr', 'dpkg-dev', 'fakeroot', 'file', 'fontconfig-config', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-10', 'gcc', 'gcc-10', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'javascript-common', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libasan6:amd64', 'libassuan0:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libclang-cpp9', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libedit2:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfakeroot:amd64', 'libffi-dev:amd64', 'libfile-fcntllock-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libhdf5-103-1:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libksba8:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm9:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libperl5.32:amd64', 'libpfm4:amd64', 'libpipeline1:amd64', 'libpng16-16:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-dev:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtinfo-dev:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libz3-dev:amd64', 'linux-libc-dev:amd64', 'llvm-9', 'llvm-9-dev', 'llvm-9-runtime', 'llvm-9-tools', 'mailcap', 'make', 'manpages', 'manpages-dev', 'media-types', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'numba-doc', 'openssl', 'patch', 'perl', 'perl-modules-5.32', 'pinentry-curses', 'python-biopython-doc', 'python-matplotlib-data', 'python-odf-doc', 'python-odf-tools', 'python-pip-whl', 'python-tables-data', 'python3', 'python3-attr', 'python3-biopython', 'python3-bottleneck', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-distutils', 'python3-et-xmlfile', 'python3-html5lib', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jdcal', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-llvmlite', 'python3-lxml:amd64', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-numba', 'python3-numexpr', 'python3-numpy', 'python3-odf', 'python3-olefile', 'python3-openpyxl', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pip', 'python3-pkg-resources', 'python3-pluggy', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pytest', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-toml', 'python3-tz', 'python3-webencodings', 'python3-wheel', 'python3-xlwt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-dev', 'python3.9-minimal', 'readline-common', 'sensible-utils', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils', 'zlib1g-dev:amd64'] 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--purge', 'nanofilt'] 1m58.2s DUMP: dpkg: warning: ignoring request to remove nanofilt which isn't installed 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--purge', 'nanofilt'] 1m58.2s INFO: Running scripts post_purge 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_purge_exceptions'] 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_purge_exceptions'] 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--purge', '--pending'] 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--purge', '--pending'] 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--remove', '--pending'] 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg', '--remove', '--pending'] 1m58.2s INFO: Running scripts post_test 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_test_exceptions'] 1m58.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'tmp/scripts/post_test_exceptions'] 1m58.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 1m58.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 1m59.8s DEBUG: No broken symlinks as far as we can find. 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-divert', '--list'] 1m59.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'dpkg-divert', '--list'] 1m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'clean'] 1m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6caa3b7', 'apt-get', 'clean'] 1m59.8s DEBUG: Recording chroot state 2m0.5s INFO: PASS: Installation and purging test. 2m1.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/shm'] 2m1.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/shm'] 2m1.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/console'] 2m1.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/console'] 2m1.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/ptmx'] 2m1.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/ptmx'] 2m1.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/pts'] 2m1.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/dev/pts'] 2m1.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/proc'] 2m1.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6caa3b7/proc'] 2m1.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 2m1.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph6caa3b7'] 2m1.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph6caa3b7 2m1.3s INFO: PASS: All tests. 2m1.3s INFO: piuparts run ends. ret=0 End: 2024-08-15 20:52:50 GMT