Start: 2024-04-20 15:33:01 GMT Package: pigx-rnaseq Version: 0.0.10+ds-2 Installed-Size: 151 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, pandoc-citeproc, snakemake, fastqc, samtools, python3-deeptools, salmon, rna-star, trim-galore, multiqc, python3-htseq, r-bioc-deseq2, r-bioc-tximport, r-cran-data.table, r-cran-rlang, r-cran-rmarkdown, r-cran-ggplot2, r-cran-ggrepel, r-cran-dt (>= 0.15+dfsg-2), r-cran-pheatmap, r-cran-corrplot, r-cran-reshape2, r-cran-plotly, r-cran-scales, r-cran-crosstalk, r-cran-gprofiler, r-bioc-summarizedexperiment, r-bioc-rtracklayer, r-cran-rjson, libjs-jquery-datatables, libjs-jquery-tablesorter Description: pipeline for checkpointed and distributed RNA-seq analyses Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c Section: science Priority: optional Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.0.10+ds-2_all.deb Size: 54364 MD5sum: 9f43b757b62d0110fd87612559a98a54 SHA256: 42e1e07a5c08e81287bcd2c8b5b4dd34c1900baa59d97d4ab5cccf23575e33a2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt pigx-rnaseq=0.0.10+ds-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt pigx-rnaseq=0.0.10+ds-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpgdowyqep 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpgdowyqep 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpgdowyqep/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'clean'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'clean'] 0m3.6s DEBUG: Recording chroot state 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-divert', '--list'] 0m4.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 0m5.6s DEBUG: No broken symlinks as far as we can find. 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 0m6.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 0m7.0s DEBUG: No broken symlinks as far as we can find. 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-cache', 'policy'] 0m7.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-cache', 'policy'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m7.9s DUMP: pigx-rnaseq: Installed: (none) Candidate: 0.0.10+ds-2 Version table: 0.0.10+ds-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.0.10+ds-2'] 6m12.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: adwaita-icon-theme alsa-topology-conf alsa-ucm-conf ant ant-optional at-spi2-core binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-10 curl cutadapt cwltool dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless dirmngr dmsetup docutils-common dpkg-dev dvisvgm fakeroot fastqc file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-liberation2 fonts-lmodern fonts-lyx fonts-mathjax fonts-noto-mono fonts-texgyre fonts-urw-base35 g++ g++-10 gcc gcc-10 gdal-data gfortran gfortran-10 ghostscript gir1.2-glib-2.0 git git-man glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz gsettings-desktop-schemas gsfonts gtk-update-icon-cache hdf5-helpers hicolor-icon-theme ibverbs-providers icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 java-common javascript-common less libactivation-java libaec-dev libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom0 libaopalliance-java libapache-pom-java libapparmor1 libargon2-1 libargs4j-java libarmadillo10 libarpack2 libasan6 libasound2 libasound2-data libassuan0 libatinject-jsr330-api-java libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbibutils7 libbigwig0 libbinutils libblas-dev libblas3 libblosc1 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libc-ares2 libc-dev-bin libc-devtools libc6-dev libcairo-gobject2 libcairo2 libcap2 libcbor0 libcc1-0 libcdi-api-java libcdt5 libcfitsio9 libcgraph6 libcharls2 libclone-perl libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcolord2 libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdap27 libdapclient6v5 libdata-dump-perl libdatrie1 libdav1d4 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdjvulibre-text libdjvulibre21 libdom4j-java libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 libencode-locale-perl libepoxy0 libepsilon1 liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfakeroot libfastinfoset-java libfftw3-double3 libfido2-1 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfindbin-libs-perl libfont-afm-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0 libgcc-10-dev libgd3 libgdal28 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf-xlib-2.0-0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgeos-3.9.0 libgeos-c1v5 libgeotiff5 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran-10-dev libgfortran5 libghc-pandoc-citeproc-data libgif7 libgirepository-1.0-1 libgit2-1.1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgs9 libgs9-common libgsl25 libgslcblas0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgts-0.7-5 libgts-bin libguava-java libguice-java libgvc6 libgvpr2 libharfbuzz0b libhawtjni-runtime-java libhdf4-0-alt libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhtsjdk-java libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-parser2.9 libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu-dev libicu67 libidn11 libijs-0.35 libilmbase25 libimagequant0 libio-html-perl libio-socket-ssl-perl libio-stringy-perl libip4tc2 libipc-system-simple-perl libisl23 libistack-commons-java libitm1 libjansi-java libjansi-native-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjemalloc2 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-d3-format libjs-es5-shim libjs-filesaver libjs-highlight.js libjs-inherits libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-sprintf-js libjs-twitter-bootstrap-datepicker libjs-underscore libjs-util libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoup-java libjsr305-java libjxr-tools libjxr0 libkmlbase1 libkmldom1 libkmlengine1 libkmod2 libkpathsea6 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm11 liblmdb0 liblocale-gettext-perl liblqr-1-0 liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickcore-6.q16-6-extra libmagickwand-6.q16-6 libmailtools-perl libmariadb3 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libminizip1 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses5-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf18 libnetpbm10 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnl-3-200 libnl-route-3-200 libnlopt0 libnode72 libnotify-bin libnotify4 libnpth0 libnsl-dev libnspr4 libnss-systemd libnss3 libnuma1 libodbc1 libogdi4.1 libopenexr25 libopenjp2-7 libopenmpi3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpcg-cpp-dev libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpdfbox-java libperl5.32 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpmix2 libpng-dev libpng-tools libpng16-16 libpoppler102 libpq5 libproj19 libproxy1v5 libpsl5 libpsm-infinipath1 libpsm2-2 libptexenc1 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libqhull8.0 libquadmath0 librdmacm1 libreadline-dev libreadline8 librelaxng-datatype-java librest-0.7-0 librngom-java librsvg2-2 librsvg2-common librtmp1 librttopo1 libruby2.7 libsasl2-2 libsasl2-modules libsasl2-modules-db libsensors-config libsensors5 libsis-base-java libsis-base-jni libsis-jhdf5-java libsis-jhdf5-jni libsisu-inject-java libsisu-plexus-java libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsodium23 libsoup-gnome2.4-1 libsoup2.4-1 libspatialite7 libsqlite3-0 libssh2-1 libstaden-read14 libstax-ex-java libstdc++-10-dev libstreambuffer-java libsuperlu5 libsynctex2 libsz2 libtbb2 libtcl8.6 libteckit0 libtexlua53 libtexluajit2 libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtirpc-dev libtk8.6 libtry-tiny-perl libtsan0 libtxw2-java libubsan1 libucx0 libudunits2-0 libudunits2-data liburi-perl liburiparser1 libuv1 libvte-2.91-0 libvte-2.91-common libvulkan1 libwagon-http-java libwagon-provider-api-java libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp6 libwebpdemux2 libwebpmux3 libwmf0.2-7 libwoff1 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-192 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxkbfile1 libxml-commons-resolver1.1-java libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxsom-java libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 libzzip-0-13 linux-libc-dev littler lmodern mailcap make manpages manpages-dev mariadb-common media-types mesa-vulkan-drivers mime-support mocha mpi-default-bin multiqc mysql-common ncbi-blast+ ncbi-data netbase netpbm node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-clipboard node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-highlight.js node-html5shiv node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-normalize.css node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs nodejs-doc notification-daemon ocl-icd-libopencl1 odbcinst odbcinst1debian2 openjdk-11-jre openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pandoc pandoc-citeproc pandoc-data patch perl perl-modules-5.32 perl-openssl-defaults pigz pinentry-curses pkg-config poppler-data preview-latex-style proj-bin proj-data publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python3 python3-adal python3-aiohttp python3-alabaster python3-appdirs python3-arcp python3-argcomplete python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-babel python3-biopython python3-blinker python3-boto3 python3-botocore python3-bs4 python3-cachecontrol python3-cachetools python3-certifi python3-cffi-backend python3-chardet python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-cryptography python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-distutils python3-dnaio python3-docutils python3-dropbox python3-flask python3-ftputil python3-future python3-gdal python3-gi python3-git python3-gitdb python3-google-auth python3-html5lib python3-htseq python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-ipython-genutils python3-irodsclient python3-isodate python3-itsdangerous python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-kubernetes python3-lib2to3 python3-lockfile python3-lxml python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-mistune python3-more-itertools python3-msal python3-msal-extensions python3-msgpack python3-msrest python3-msrestazure python3-multidict python3-mypy-extensions python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-oauthlib python3-olefile python3-openssl python3-packaging python3-pil python3-pkg-resources python3-plotly python3-portalocker python3-prettytable python3-prov python3-psutil python3-pulp python3-py2bit python3-pyasn1 python3-pyasn1-modules python3-pybigwig python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-pyparsing python3-pyrsistent python3-pysam python3-ratelimiter python3-rdflib python3-rdflib-jsonld python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-oauthlib python3-retrying python3-roman python3-rsa python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-schema-salad python3-scipy python3-setuptools python3-shellescape python3-simplejson python3-six python3-smmap python3-snowballstemmer python3-soupsieve python3-sparqlwrapper python3-spectra python3-sphinx python3-tk python3-toposort python3-traitlets python3-typing-extensions python3-tz python3-uamqp python3-urllib3 python3-webencodings python3-websocket python3-werkzeug python3-wrapt python3-xopen python3-yaml python3-yappi python3-yarl python3-zipp python3.9 python3.9-minimal r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocviews r-bioc-biostrings r-bioc-bluster r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-edger r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-glmgampoi r-bioc-go.db r-bioc-graph r-bioc-hdf5array r-bioc-hsmmsinglecell r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-monocle r-bioc-org.hs.eg.db r-bioc-rbgl r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-scran r-bioc-scuttle r-bioc-shortread r-bioc-singlecellexperiment r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-base64url r-cran-batchjobs r-cran-batchtools r-cran-bbmisc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-boot r-cran-brew r-cran-brio r-cran-broom r-cran-cachem r-cran-callr r-cran-caret r-cran-catools r-cran-cba r-cran-checkmate r-cran-class r-cran-classint r-cran-cli r-cran-cliapp r-cran-clipr r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-combinat r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-crosstalk r-cran-curl r-cran-cvst r-cran-data.table r-cran-dbi r-cran-dbitest r-cran-dbplyr r-cran-ddalpha r-cran-ddrtree r-cran-decor r-cran-deldir r-cran-densityclust r-cran-deoptimr r-cran-desc r-cran-devtools r-cran-diffobj r-cran-digest r-cran-dimred r-cran-docopt r-cran-domc r-cran-doparallel r-cran-dplyr r-cran-dqrng r-cran-drr r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-e1071 r-cran-earth r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastica r-cran-fastmap r-cran-fastmatch r-cran-filehash r-cran-fnn r-cran-fontbitstreamvera r-cran-fontliberation r-cran-fontquiver r-cran-foreach r-cran-foreign r-cran-formatr r-cran-formula r-cran-freetypeharfbuzz r-cran-fs r-cran-fts r-cran-furrr r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-gdata r-cran-gdtools r-cran-generics r-cran-geometry r-cran-geosphere r-cran-gert r-cran-ggplot2 r-cran-ggrepel r-cran-ggthemes r-cran-gh r-cran-gitcreds r-cran-globals r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gprofiler r-cran-gridextra r-cran-gsl r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-igraph r-cran-ini r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-ks r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-linprog r-cran-listenv r-cran-littler r-cran-lme4 r-cran-locfit r-cran-logcondens r-cran-lpsolve r-cran-lubridate r-cran-lwgeom r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mclust r-cran-mda r-cran-memoise r-cran-mets r-cran-mgcv r-cran-mime r-cran-miniui r-cran-minqa r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modeldata r-cran-modelmetrics r-cran-multicool r-cran-multicore r-cran-munsell r-cran-mvtnorm r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise r-cran-prettycode r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim r-cran-progress r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-qlcmatrix r-cran-quadprog r-cran-quantmod r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r6 r-cran-randomfields r-cran-randomfieldsutils r-cran-ranger r-cran-rann r-cran-rappdirs r-cran-raster r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpproll r-cran-rcurl r-cran-recipes r-cran-rematch2 r-cran-remotes r-cran-reshape2 r-cran-rex r-cran-rgdal r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rmpi r-cran-rmysql r-cran-robustbase r-cran-rocr r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsclient r-cran-rspectra r-cran-rsqlite r-cran-rstudioapi r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-rversions r-cran-scales r-cran-selectr r-cran-sendmailr r-cran-sessioninfo r-cran-setrng r-cran-sf r-cran-sfsmisc r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-slam r-cran-slider r-cran-snow r-cran-sodium r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-sparsesvd r-cran-spatial r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-teachingdemos r-cran-tensor r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-timereg r-cran-timeseries r-cran-tinytex r-cran-tseries r-cran-ttr r-cran-units r-cran-usethis r-cran-utf8 r-cran-vctrs r-cran-vdiffr r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-warp r-cran-webutils r-cran-whisker r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable r-cran-xts r-cran-yaml r-cran-zip r-cran-zoo r-doc-html r-recommended rake readline-common rna-star ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common sphinx-rtd-theme-common systemd systemd-sysv systemd-timesyncd t1utils tcl tcl8.6 teckit termit tex-common tex-gyre texlive-base texlive-bibtex-extra texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic texlive-xetex tipa tk tk8.6 tk8.6-blt2.5 trim-galore ttf-bitstream-vera ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xz-utils zip zlib1g-dev Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java binutils-doc blt-demo cpp-doc gcc-10-locales docker.io | singularity-container pinentry-gnome3 tor debian-keyring fonts-noto fonts-freefont-otf | fonts-freefont-ttf g++-multilib g++-10-multilib gcc-10-doc gcc-multilib autoconf automake libtool flex bison gdb gcc-doc gcc-10-multilib gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev ghostscript-x gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn parcimonie xloadimage scdaemon graphviz-doc imagemagick-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp gnuplot grads groff-base hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch apache2 | lighttpd | httpd libaopalliance-java-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libdigest-hmac-perl libgssapi-perl liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc libel-api-java colord libcommons-io-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java bzr libfftw3-bin libfftw3-dev libgd-tools gdbm-l10n geotiff-bin gdal-bin libgeotiff-epsg gpm gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html gvfs libasm-java libcglib-java libhdf4-doc libhdf4-alt-dev hdf4-tools libhdf5-doc picard-tools libhwloc-contrib-plugins icu-doc libjdom1-java libxom-java libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libjs-angularjs libjsoup-java-doc libjsr305-java-doc liblcms2-utils libcrypt-ssleay-perl liblzma-doc inkscape libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java ncurses-doc libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin pciutils pcscd libplexus-classworlds-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc readline-doc librsvg2-bin libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql lm-sensors testng libstdc++-10-doc libwmf0.2-7-gtk libauthen-ntlm-perl libxml-commons-resolver1.1-java-doc libunicode-map8-perl libunicode-string-perl xml-twig-tools make-doc man-browser chai npm opencl-icd libnss-mdns fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic keychain libpam-ssh monkeysphere ssh-askpass texlive-luatex context wkhtmltopdf groff ghc php python node-katex citation-style-language-styles ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl pinentry-doc poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-venv python-attr-doc python-azure-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-psycopg2 raxml t-coffee wise w3-dtd-mathml python-blinker-doc python-cryptography-doc python3-cryptography-vectors python-cycler-doc python-python-deeptoolsintervals-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french python-flask-doc python-future-doc python-git-doc python3-genshi python-jinja2-doc python-jsonschema-doc python3-pip python3-crypto python-lockfile-doc python3-lxml-dbg python-lxml-doc python-markdown-doc dvipng gir1.2-gtk-3.0 ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils ttf-staypuft python-networkx-doc python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-openssl-doc python3-openssl-dbg python-pil-doc python3-pil-dbg python3-pandas python3-ipykernel python-prov-doc python-psutil-doc python-pygments-doc python-pygraphviz-doc python-pyinotify-doc python-pyparsing-doc python-rdflib-doc python3-renderpm-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf latexmk python3-sphinx-rtd-theme sphinx-doc tix python3-tk-dbg python-werkzeug-doc python3-watchdog python3.9-venv python3.9-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-fonts-extra texinfo r-bioc-all r-bioc-affy r-cran-rcppannoy r-bioc-variantannotation r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-scater r-cran-profmem r-cran-readr r-cran-pbapply r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-cran-bench r-bioc-experimenthub r-cran-biasedurn r-cran-ellipse r-bioc-destiny r-cran-hmisc r-cran-seurat r-cran-tinytest r-bioc-biomart r-cran-future.batchtools r-cran-parallelmap r-bioc-biocversion r-cran-rsconnect r-cran-tufte r-cran-webshot r-cran-aer r-cran-bbmle r-cran-car r-cran-cmprsk r-cran-coda r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm r-cran-lavaan r-cran-leaps r-cran-lmtest r-cran-lsmeans r-cran-metafor r-cran-multcomp r-cran-network r-cran-ordinal r-cran-plm r-cran-psych r-cran-robust r-cran-sandwich r-cran-spdep r-cran-spatialreg r-cran-survey r-cran-systemfit r-cran-bradleyterry2 r-cran-party r-cran-randomforest r-cran-gclus r-cran-spdata r-cran-vcd r-cran-r.utils r-cran-nmf r-cran-energy r-cran-pcapp r-cran-reticulate r-cran-rgl r-cran-scatterplot3d r-cran-vegan r-cran-unitizer r-cran-svglite r-cran-ggbeeswarm r-cran-forcats r-cran-cairo r-cran-ragg r-cran-ape r-cran-th.data r-cran-magick r-cran-misc3d r-cran-fields r-cran-lavasearch2 r-cran-optimx r-cran-polycor r-cran-getopt r-cran-interp r-cran-mapdata r-cran-ucminf r-cran-cowplot r-cran-ggally r-cran-dendextend r-cran-irdisplay r-cran-gbm r-cran-mlr r-cran-partykit r-cran-itertools r-cran-tcltk2 r-cran-tkrplot r-cran-spam r-cran-ncdf4 r-cran-inline r-cran-git2r r-cran-rvest r-cran-rsprng r-cran-dichromat r-cran-s2 r-cran-stars r-cran-rlecuyer r-cran-sm r-cran-logspline r-cran-formattable r-cran-udunits2 r-cran-ggforce r-cran-zeallot r-cran-chron mozilla | www-browser ri ruby-dev bundler sgml-base-doc systemd-container policykit-1 tcl-tclreadline debhelper perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex mesa-utils nickle cairo-5c xorg-docs-core Recommended packages: python3-drmaa The following NEW packages will be installed: adwaita-icon-theme alsa-topology-conf alsa-ucm-conf ant ant-optional at-spi2-core binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-10 curl cutadapt cwltool dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless dirmngr dmsetup docutils-common dpkg-dev dvisvgm fakeroot fastqc file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-liberation2 fonts-lmodern fonts-lyx fonts-mathjax fonts-noto-mono fonts-texgyre fonts-urw-base35 g++ g++-10 gcc gcc-10 gdal-data gfortran gfortran-10 ghostscript gir1.2-glib-2.0 git git-man glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm graphviz gsettings-desktop-schemas gsfonts gtk-update-icon-cache hdf5-helpers hicolor-icon-theme ibverbs-providers icu-devtools imagemagick imagemagick-6-common imagemagick-6.q16 java-common javascript-common less libactivation-java libaec-dev libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libann0 libaom0 libaopalliance-java libapache-pom-java libapparmor1 libargon2-1 libargs4j-java libarmadillo10 libarpack2 libasan6 libasound2 libasound2-data libassuan0 libatinject-jsr330-api-java libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libbibutils7 libbigwig0 libbinutils libblas-dev libblas3 libblosc1 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libc-ares2 libc-dev-bin libc-devtools libc6-dev libcairo-gobject2 libcairo2 libcap2 libcbor0 libcc1-0 libcdi-api-java libcdt5 libcfitsio9 libcgraph6 libcharls2 libclone-perl libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcolord2 libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcryptsetup12 libctf-nobfd0 libctf0 libcups2 libcurl3-gnutls libcurl4 libdap27 libdapclient6v5 libdata-dump-perl libdatrie1 libdav1d4 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdevmapper1.02.1 libdjvulibre-text libdjvulibre21 libdom4j-java libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 libencode-locale-perl libepoxy0 libepsilon1 liberror-perl libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfakeroot libfastinfoset-java libfftw3-double3 libfido2-1 libfile-basedir-perl libfile-desktopentry-perl libfile-fcntllock-perl libfile-listing-perl libfile-mimeinfo-perl libfindbin-libs-perl libfont-afm-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libfreexl1 libfribidi0 libfyba0 libgcc-10-dev libgd3 libgdal28 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf-xlib-2.0-0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-common libgeos-3.9.0 libgeos-c1v5 libgeotiff5 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran-10-dev libgfortran5 libghc-pandoc-citeproc-data libgif7 libgirepository-1.0-1 libgit2-1.1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-data libglvnd0 libglx-mesa0 libglx0 libgomp1 libgpm2 libgraphite2-3 libgs9 libgs9-common libgsl25 libgslcblas0 libgtk-3-0 libgtk-3-bin libgtk-3-common libgts-0.7-5 libgts-bin libguava-java libguice-java libgvc6 libgvpr2 libharfbuzz0b libhawtjni-runtime-java libhdf4-0-alt libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libheif1 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3 libhtscodecs2 libhtsjdk-java libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-parser2.9 libhttpclient-java libhttpcore-java libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu-dev libicu67 libidn11 libijs-0.35 libilmbase25 libimagequant0 libio-html-perl libio-socket-ssl-perl libio-stringy-perl libip4tc2 libipc-system-simple-perl libisl23 libistack-commons-java libitm1 libjansi-java libjansi-native-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbig2dec0 libjbzip2-java libjemalloc2 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-d3-format libjs-es5-shim libjs-filesaver libjs-highlight.js libjs-inherits libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-sprintf-js libjs-twitter-bootstrap-datepicker libjs-underscore libjs-util libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoup-java libjsr305-java libjxr-tools libjxr0 libkmlbase1 libkmldom1 libkmlengine1 libkmod2 libkpathsea6 libksba8 liblab-gamut1 liblapack-dev liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common libllvm11 liblmdb0 liblocale-gettext-perl liblqr-1-0 liblsan0 libltdl7 liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickcore-6.q16-6-extra libmagickwand-6.q16-6 libmailtools-perl libmariadb3 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libminizip1 libmpc3 libmpdec3 libmpfr6 libncurses-dev libncurses5-dev libncurses6 libncursesw6 libnet-dbus-perl libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf18 libnetpbm10 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnl-3-200 libnl-route-3-200 libnlopt0 libnode72 libnotify-bin libnotify4 libnpth0 libnsl-dev libnspr4 libnss-systemd libnss3 libnuma1 libodbc1 libogdi4.1 libopenexr25 libopenjp2-7 libopenmpi3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpcg-cpp-dev libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpdfbox-java libperl5.32 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpmix2 libpng-dev libpng-tools libpng16-16 libpoppler102 libpq5 libproj19 libproxy1v5 libpsl5 libpsm-infinipath1 libpsm2-2 libptexenc1 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libqhull8.0 libquadmath0 librdmacm1 libreadline-dev libreadline8 librelaxng-datatype-java librest-0.7-0 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libwww-robotrules-perl libx11-6 libx11-data libx11-protocol-perl libx11-xcb1 libx265-192 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces-c3.2 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxkbfile1 libxml-commons-resolver1.1-java libxml-parser-perl libxml-twig-perl libxml-xpathengine-perl libxml2 libxmu6 libxmuu1 libxnvctrl0 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxsom-java libxss1 libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 libzzip-0-13 linux-libc-dev littler lmodern mailcap make manpages manpages-dev mariadb-common media-types mesa-vulkan-drivers mime-support mocha mpi-default-bin multiqc mysql-common ncbi-blast+ ncbi-data netbase netpbm node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each 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node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs nodejs-doc notification-daemon ocl-icd-libopencl1 odbcinst odbcinst1debian2 openjdk-11-jre openjdk-11-jre-headless openmpi-bin openmpi-common openssh-client openssl pandoc pandoc-citeproc pandoc-data patch perl perl-modules-5.32 perl-openssl-defaults pigx-rnaseq pigz pinentry-curses pkg-config poppler-data preview-latex-style proj-bin proj-data publicsuffix python-babel-localedata python-biopython-doc python-matplotlib-data python3 python3-adal python3-aiohttp python3-alabaster python3-appdirs python3-arcp python3-argcomplete python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-babel python3-biopython python3-blinker python3-boto3 python3-botocore python3-bs4 python3-cachecontrol python3-cachetools python3-certifi python3-cffi-backend python3-chardet python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-cryptography python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-distutils python3-dnaio python3-docutils python3-dropbox python3-flask python3-ftputil python3-future python3-gdal python3-gi python3-git python3-gitdb python3-google-auth python3-html5lib python3-htseq python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-ipython-genutils python3-irodsclient python3-isodate python3-itsdangerous python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-kiwisolver python3-kubernetes python3-lib2to3 python3-lockfile python3-lxml python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-mistune python3-more-itertools python3-msal python3-msal-extensions python3-msgpack python3-msrest python3-msrestazure python3-multidict python3-mypy-extensions python3-nbformat 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python3-uamqp python3-urllib3 python3-webencodings python3-websocket python3-werkzeug python3-wrapt python3-xopen python3-yaml python3-yappi python3-yarl python3-zipp python3.9 python3.9-minimal r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocviews r-bioc-biostrings r-bioc-bluster r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-deseq2 r-bioc-edger r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-glmgampoi r-bioc-go.db r-bioc-graph r-bioc-hdf5array r-bioc-hsmmsinglecell r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-monocle r-bioc-org.hs.eg.db r-bioc-rbgl r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-scran r-bioc-scuttle r-bioc-shortread 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r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-ks r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-linprog r-cran-listenv r-cran-littler r-cran-lme4 r-cran-locfit r-cran-logcondens r-cran-lpsolve r-cran-lubridate r-cran-lwgeom r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mclust r-cran-mda r-cran-memoise r-cran-mets r-cran-mgcv r-cran-mime r-cran-miniui r-cran-minqa r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modeldata r-cran-modelmetrics r-cran-multicool r-cran-multicore r-cran-munsell r-cran-mvtnorm r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise r-cran-prettycode r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim r-cran-progress r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-qlcmatrix r-cran-quadprog r-cran-quantmod r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r6 r-cran-randomfields r-cran-randomfieldsutils r-cran-ranger r-cran-rann r-cran-rappdirs r-cran-raster r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpproll r-cran-rcurl r-cran-recipes r-cran-rematch2 r-cran-remotes r-cran-reshape2 r-cran-rex r-cran-rgdal r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rmpi r-cran-rmysql r-cran-robustbase r-cran-rocr r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsclient r-cran-rspectra r-cran-rsqlite r-cran-rstudioapi r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-rversions r-cran-scales r-cran-selectr r-cran-sendmailr r-cran-sessioninfo r-cran-setrng r-cran-sf r-cran-sfsmisc r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-slam r-cran-slider r-cran-snow r-cran-sodium r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-sparsesvd r-cran-spatial r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-teachingdemos r-cran-tensor r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-timereg r-cran-timeseries r-cran-tinytex r-cran-tseries r-cran-ttr r-cran-units r-cran-usethis r-cran-utf8 r-cran-vctrs r-cran-vdiffr r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-warp r-cran-webutils r-cran-whisker r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable r-cran-xts r-cran-yaml r-cran-zip r-cran-zoo r-doc-html r-recommended rake readline-common rna-star ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common sphinx-rtd-theme-common systemd systemd-sysv systemd-timesyncd t1utils tcl tcl8.6 teckit termit tex-common tex-gyre texlive-base texlive-bibtex-extra texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic texlive-xetex tipa tk tk8.6 tk8.6-blt2.5 trim-galore ttf-bitstream-vera ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xz-utils zip zlib1g-dev 0 upgraded, 1394 newly installed, 0 to remove and 0 not upgraded. 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amd64 systemd-sysv amd64 247.3-7+deb11u4 [114 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 dbus amd64 1.12.28-0+deb11u1 [244 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 fonts-lato 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http://deb.debian.org/debian bullseye/main amd64 fonts-liberation all 1:1.07.4-11 [828 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 fonts-liberation2 all 2.1.3-1 [1468 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 fonts-texgyre all 20180621-3.1 [10.2 MB] Get:36 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libaom0 amd64 1.0.0.errata1-3+deb11u1 [1120 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libdav1d4 amd64 0.7.1-3 [333 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libde265-0 amd64 1.0.11-0+deb11u3 [180 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libx265-192 amd64 3.4-2 [1095 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libheif1 amd64 1.11.0-1 [191 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 liblqr-1-0 amd64 0.4.2-2.1 [29.1 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libopenjp2-7 amd64 2.4.0-3 [172 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 imagemagick-6-common all 8:6.9.11.60+dfsg-1.3+deb11u2 [211 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libmagickcore-6.q16-6 amd64 8:6.9.11.60+dfsg-1.3+deb11u2 [1815 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libmagickwand-6.q16-6 amd64 8:6.9.11.60+dfsg-1.3+deb11u2 [453 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 pigz amd64 2.6-1 [64.0 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 poppler-data all 0.4.10-1 [1602 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 tex-common all 6.16 [53.7 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 less amd64 551-2 [133 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3+deb11u1 [273 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3+deb11u1 [128 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3+deb11u1 [69.2 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libnss-systemd amd64 247.3-7+deb11u4 [199 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libpam-systemd amd64 247.3-7+deb11u4 [283 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 manpages all 5.10-1 [1412 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libfido2-1 amd64 1.6.0-2 [53.3 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 openssh-client amd64 1:8.4p1-5+deb11u3 [932 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 systemd-timesyncd amd64 247.3-7+deb11u4 [131 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 xz-utils amd64 5.2.5-2.1~deb11u1 [220 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u1 [147 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 gtk-update-icon-cache amd64 3.24.24-4+deb11u3 [88.4 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 adwaita-icon-theme all 3.38.0-1 [10.9 MB] Get:112 http://deb.debian.org/debian bullseye/main amd64 alsa-topology-conf all 1.2.4-1 [12.8 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 alsa-ucm-conf all 1.2.4-2 [28.1 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.22+7-1~deb11u1 [38.2 MB] Get:128 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 ant all 1.10.9-4 [2118 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 ant-optional all 1.10.9-4 [381 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libatspi2.0-0 amd64 2.38.0-4+deb11u1 [72.4 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 at-spi2-core amd64 2.38.0-4+deb11u1 [72.5 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 binutils-common amd64 2.35.2-2 [2220 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libbinutils amd64 2.35.2-2 [570 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libctf-nobfd0 amd64 2.35.2-2 [110 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libctf0 amd64 2.35.2-2 [53.2 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 binutils-x86-64-linux-gnu amd64 2.35.2-2 [1809 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 binutils amd64 2.35.2-2 [61.2 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u8 [276 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.209-2 [1698 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u8 [2361 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libisl23 amd64 0.23-1 [676 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libmpc3 amd64 1.2.0-1 [45.0 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 cpp-10 amd64 10.2.1-6 [8528 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 cpp amd64 4:10.2.1-1 [19.7 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libcc1-0 amd64 10.2.1-6 [47.0 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:163 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 gcc-10 amd64 10.2.1-6 [17.0 MB] Get:170 http://deb.debian.org/debian bullseye/main amd64 gcc amd64 4:10.2.1-1 [5192 B] Get:171 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:174 http://deb.debian.org/debian bullseye/main amd64 make amd64 4.3-4.1 [396 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 libdpkg-perl all 1.20.13 [1552 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 patch amd64 2.7.6-7 [128 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 dpkg-dev all 1.20.13 [2314 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 build-essential amd64 12.9 [7704 B] Get:179 http://deb.debian.org/debian bullseye/main amd64 bzip2-doc all 1.0.8-4 [514 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-1 [485 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 coinor-libclp1 amd64 1.17.5+repack1-1 [939 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-2 [433 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 coinor-libcbc3 amd64 2.10.5+ds1-3 [715 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 coinor-cbc amd64 2.10.5+ds1-3 [14.7 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 curl amd64 7.74.0-1.3+deb11u11 [271 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 python3-xopen all 1.1.0-1 [12.0 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 python3-dnaio amd64 0.5.0-1 [95.3 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 python3-cutadapt amd64 3.2-2 [125 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 cutadapt all 3.2-2 [22.3 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 python3-argcomplete all 1.8.1-1.5 [29.7 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 python3-humanfriendly all 9.1-1 [84.6 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 python3-coloredlogs all 7.3-2 [28.0 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 python3-mypy-extensions all 0.4.3-2 [5700 B] Get:207 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 python3-lxml amd64 4.6.3+dfsg-0.1+deb11u1 [1093 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 python3-isodate all 0.6.0-2 [25.0 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 python3-rdflib all 5.0.0-1.1 [196 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 python3-prov all 1.5.2-2 [94.5 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 libcdt5 amd64 2.42.2-5 [62.2 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 libcgraph6 amd64 2.42.2-5 [85.5 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 libpathplan4 amd64 2.42.2-5 [64.3 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 libgvc6 amd64 2.42.2-5 [695 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 libgvpr2 amd64 2.42.2-5 [212 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 liblab-gamut1 amd64 2.42.2-5 [221 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 libxaw7 amd64 2:1.0.13-1.1 [202 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 graphviz amd64 2.42.2-5 [632 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 python3-pydot all 1.4.2-1 [32.7 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 python3-ruamel.yaml.clib amd64 0.2.2-1+b2 [132 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 python3-ruamel.yaml all 0.16.12-2 [110 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 python3-msgpack amd64 1.0.0-6+b1 [69.2 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 python3-cachecontrol all 0.12.6-1 [16.4 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 python3-lockfile all 1:0.12.2-2.2 [17.3 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 python3-mistune all 0.8.4-4 [16.4 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 python3-rdflib-jsonld all 0.5.0-1 [13.5 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 python3-typing-extensions all 3.7.4.3-1 [29.8 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:261 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 python3-schema-salad all 7.0.20210124093443-1 [302 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 python3-shellescape all 3.4.1-4 [4884 B] Get:264 http://deb.debian.org/debian bullseye/main amd64 python3-arcp all 0.2.1-3 [13.5 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 cwltool all 3.0.20210124104916-3+deb11u1 [404 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 dbus-user-session amd64 1.12.28-0+deb11u1 [100 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 libdconf1 amd64 0.38.0-2 [43.5 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 dconf-service amd64 0.38.0-2 [37.4 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 dconf-gsettings-backend amd64 0.38.0-2 [30.6 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1+deb11u2 [204 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:281 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:282 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:283 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:284 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:285 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:286 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:287 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get:288 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:289 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get:290 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get:291 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get:292 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:293 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:294 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get:295 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:296 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:297 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get:298 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get:299 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get:300 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:301 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:302 http://deb.debian.org/debian bullseye/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:303 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre amd64 11.0.22+7-1~deb11u1 [194 kB] Get:304 http://deb.debian.org/debian bullseye/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:305 http://deb.debian.org/debian bullseye/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:306 http://deb.debian.org/debian bullseye/main amd64 gpgconf amd64 2.2.27-2+deb11u2 [548 kB] Get:307 http://deb.debian.org/debian bullseye/main amd64 libksba8 amd64 1.5.0-3+deb11u2 [123 kB] Get:308 http://deb.debian.org/debian bullseye/main amd64 libnpth0 amd64 1.6-3 [19.0 kB] Get:309 http://deb.debian.org/debian bullseye/main amd64 dirmngr amd64 2.2.27-2+deb11u2 [763 kB] Get:310 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:311 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get:312 http://deb.debian.org/debian bullseye/main amd64 libgs9-common all 9.53.3~dfsg-7+deb11u6 [735 kB] Get:313 http://deb.debian.org/debian bullseye/main amd64 libidn11 amd64 1.33-3 [116 kB] Get:314 http://deb.debian.org/debian bullseye/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:315 http://deb.debian.org/debian bullseye/main amd64 libjbig2dec0 amd64 0.19-2 [67.2 kB] Get:316 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:317 http://deb.debian.org/debian bullseye/main amd64 libgs9 amd64 9.53.3~dfsg-7+deb11u6 [2245 kB] Get:318 http://deb.debian.org/debian bullseye/main amd64 libkpathsea6 amd64 2020.20200327.54578-7+deb11u1 [172 kB] Get:319 http://deb.debian.org/debian bullseye/main amd64 libwoff1 amd64 1.0.2-1+b1 [42.4 kB] Get:320 http://deb.debian.org/debian bullseye/main amd64 dvisvgm amd64 2.11.1-1 [1094 kB] Get:321 http://deb.debian.org/debian bullseye/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:322 http://deb.debian.org/debian bullseye/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] Get:323 http://deb.debian.org/debian bullseye/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:324 http://deb.debian.org/debian bullseye/main amd64 libjbzip2-java all 0.9.1-5 [42.6 kB] Get:325 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get:326 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:327 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get:328 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:329 http://deb.debian.org/debian bullseye/main amd64 libcommons-jexl2-java all 2.1.1-5 [256 kB] Get:330 http://deb.debian.org/debian bullseye/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:331 http://deb.debian.org/debian bullseye/main amd64 libargs4j-java all 2.33-1.1 [137 kB] Get:332 http://deb.debian.org/debian bullseye/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:333 http://deb.debian.org/debian bullseye/main amd64 libdom4j-java all 2.1.3-1 [310 kB] Get:334 http://deb.debian.org/debian bullseye/main amd64 libcommons-io-java all 2.8.0-1 [279 kB] Get:335 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-utils-java all 3.3.0-1+deb11u1 [149 kB] Get:336 http://deb.debian.org/debian bullseye/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:337 http://deb.debian.org/debian bullseye/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:338 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang3-java all 3.11-1 [550 kB] Get:339 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get:340 http://deb.debian.org/debian bullseye/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:341 http://deb.debian.org/debian bullseye/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:342 http://deb.debian.org/debian bullseye/main amd64 libguava-java all 29.0-6 [2419 kB] Get:343 http://deb.debian.org/debian bullseye/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get:344 http://deb.debian.org/debian bullseye/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:345 http://deb.debian.org/debian bullseye/main amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get:346 http://deb.debian.org/debian bullseye/main amd64 libwagon-provider-api-java all 3.3.4-1 [50.2 kB] Get:347 http://deb.debian.org/debian bullseye/main amd64 libmaven-resolver-java all 1.4.2-3 [556 kB] Get:348 http://deb.debian.org/debian bullseye/main amd64 libplexus-cipher-java all 1.8-2 [15.0 kB] Get:349 http://deb.debian.org/debian bullseye/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:350 http://deb.debian.org/debian bullseye/main amd64 libplexus-component-annotations-java all 2.1.0-1 [7620 B] Get:351 http://deb.debian.org/debian bullseye/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:352 http://deb.debian.org/debian bullseye/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:353 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:354 http://deb.debian.org/debian bullseye/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get:355 http://deb.debian.org/debian bullseye/main amd64 libslf4j-java all 1.7.30-1 [144 kB] Get:356 http://deb.debian.org/debian bullseye/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get:357 http://deb.debian.org/debian bullseye/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get:358 http://deb.debian.org/debian bullseye/main amd64 libmaven3-core-java all 3.6.3-5 [1538 kB] Get:359 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:360 http://deb.debian.org/debian bullseye/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:361 http://deb.debian.org/debian bullseye/main amd64 libplexus-io-java all 3.2.0-1.1 [65.0 kB] Get:362 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:363 http://deb.debian.org/debian bullseye/main amd64 libsnappy-jni amd64 1.1.8.3-1 [7152 B] Get:364 http://deb.debian.org/debian bullseye/main amd64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get:365 http://deb.debian.org/debian bullseye/main amd64 libxz-java all 1.8-2 [141 kB] Get:366 http://deb.debian.org/debian bullseye/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:367 http://deb.debian.org/debian bullseye/main amd64 libhttpcore-java all 4.4.14-1 [631 kB] Get:368 http://deb.debian.org/debian bullseye/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:369 http://deb.debian.org/debian bullseye/main amd64 libhttpclient-java all 4.5.13-2 [1233 kB] Get:370 http://deb.debian.org/debian bullseye/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:371 http://deb.debian.org/debian bullseye/main amd64 libwagon-http-java all 3.3.4-1 [53.9 kB] Get:372 http://deb.debian.org/debian bullseye/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:373 http://deb.debian.org/debian bullseye/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10 [163 kB] Get:374 http://deb.debian.org/debian bullseye/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get:375 http://deb.debian.org/debian bullseye/main amd64 librngom-java all 2.3.0.1-10 [288 kB] Get:376 http://deb.debian.org/debian bullseye/main amd64 libxsom-java all 2.3.0.1-10 [396 kB] Get:377 http://deb.debian.org/debian bullseye/main amd64 libtxw2-java all 2.3.0.1-10 [134 kB] Get:378 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:379 http://deb.debian.org/debian bullseye/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:380 http://deb.debian.org/debian bullseye/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:381 http://deb.debian.org/debian bullseye/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:382 http://deb.debian.org/debian bullseye/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:383 http://deb.debian.org/debian bullseye/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:384 http://deb.debian.org/debian bullseye/main amd64 libjaxb-java all 2.3.0.1-10 [1954 kB] Get:385 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk2 amd64 2.10.9-1 [59.2 kB] Get:386 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk-dev amd64 2.10.9-1 [104 kB] Get:387 http://deb.debian.org/debian bullseye/main amd64 libngs-java amd64 2.10.9-1 [80.4 kB] Get:388 http://deb.debian.org/debian bullseye/main amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1607 kB] Get:389 http://deb.debian.org/debian bullseye/main amd64 libfindbin-libs-perl all 2.190.02-1 [30.3 kB] Get:390 http://deb.debian.org/debian bullseye/main amd64 libsis-base-jni amd64 18.09~pre1+git20180928.45fbd31+dfsg-3 [12.5 kB] Get:391 http://deb.debian.org/debian bullseye/main amd64 libsis-base-java all 18.09~pre1+git20180928.45fbd31+dfsg-3 [97.8 kB] Get:392 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:393 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:394 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:395 http://deb.debian.org/debian bullseye/main amd64 libsis-jhdf5-jni amd64 19.04.0+dfsg-4 [96.9 kB] Get:396 http://deb.debian.org/debian bullseye/main amd64 libsis-jhdf5-java all 19.04.0+dfsg-4 [1491 kB] Get:397 http://deb.debian.org/debian bullseye/main amd64 fastqc all 0.11.9+dfsg-4 [390 kB] Get:398 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-extra all 2.37-2 [2070 kB] Get:399 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:400 http://deb.debian.org/debian bullseye/main amd64 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get:401 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:402 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:403 http://deb.debian.org/debian bullseye/main amd64 fonts-noto-mono all 20201225-1 [402 kB] Get:404 http://deb.debian.org/debian bullseye/main amd64 gdal-data all 3.2.2+dfsg-2+deb11u2 [462 kB] Get:405 http://deb.debian.org/debian bullseye/main amd64 libgfortran-10-dev amd64 10.2.1-6 [769 kB] Get:406 http://deb.debian.org/debian bullseye/main amd64 gfortran-10 amd64 10.2.1-6 [9447 kB] Get:407 http://deb.debian.org/debian bullseye/main amd64 gfortran amd64 4:10.2.1-1 [1428 B] Get:408 http://deb.debian.org/debian bullseye/main amd64 ghostscript amd64 9.53.3~dfsg-7+deb11u6 [98.3 kB] Get:409 http://deb.debian.org/debian bullseye/main amd64 libgirepository-1.0-1 amd64 1.66.1-1+b1 [96.7 kB] Get:410 http://deb.debian.org/debian bullseye/main amd64 gir1.2-glib-2.0 amd64 1.66.1-1+b1 [151 kB] Get:411 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:412 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:413 http://deb.debian.org/debian bullseye/main amd64 git-man all 1:2.30.2-1+deb11u2 [1828 kB] Get:414 http://deb.debian.org/debian bullseye/main amd64 git amd64 1:2.30.2-1+deb11u2 [5518 kB] Get:415 http://deb.debian.org/debian bullseye/main amd64 libproxy1v5 amd64 0.4.17-1 [59.5 kB] Get:416 http://deb.debian.org/debian bullseye/main amd64 glib-networking-common all 2.66.0-2 [68.1 kB] Get:417 http://deb.debian.org/debian bullseye/main amd64 glib-networking-services amd64 2.66.0-2 [17.5 kB] Get:418 http://deb.debian.org/debian bullseye/main amd64 gsettings-desktop-schemas all 3.38.0-2 [588 kB] Get:419 http://deb.debian.org/debian bullseye/main amd64 glib-networking amd64 2.66.0-2 [67.6 kB] Get:420 http://deb.debian.org/debian bullseye/main amd64 gnupg-l10n all 2.2.27-2+deb11u2 [1086 kB] Get:421 http://deb.debian.org/debian bullseye/main amd64 gnupg-utils amd64 2.2.27-2+deb11u2 [905 kB] Get:422 http://deb.debian.org/debian bullseye/main amd64 gpg amd64 2.2.27-2+deb11u2 [928 kB] Get:423 http://deb.debian.org/debian bullseye/main amd64 pinentry-curses amd64 1.1.0-4 [64.9 kB] Get:424 http://deb.debian.org/debian bullseye/main amd64 gpg-agent amd64 2.2.27-2+deb11u2 [669 kB] Get:425 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-client amd64 2.2.27-2+deb11u2 [524 kB] Get:426 http://deb.debian.org/debian bullseye/main amd64 gpg-wks-server amd64 2.2.27-2+deb11u2 [516 kB] Get:427 http://deb.debian.org/debian bullseye/main amd64 gpgsm amd64 2.2.27-2+deb11u2 [645 kB] Get:428 http://deb.debian.org/debian bullseye/main amd64 gnupg all 2.2.27-2+deb11u2 [825 kB] Get:429 http://deb.debian.org/debian bullseye/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.5 [3125 kB] Get:430 http://deb.debian.org/debian bullseye/main amd64 hdf5-helpers amd64 1.10.6+repack-4+deb11u1 [40.4 kB] Get:431 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:432 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:433 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get:434 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get:435 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get:436 http://deb.debian.org/debian bullseye/main amd64 imagemagick-6.q16 amd64 8:6.9.11.60+dfsg-1.3+deb11u2 [383 kB] Get:437 http://deb.debian.org/debian bullseye/main amd64 imagemagick amd64 8:6.9.11.60+dfsg-1.3+deb11u2 [167 kB] Get:438 http://deb.debian.org/debian bullseye/main amd64 javascript-common all 11+nmu1 [6260 B] Get:439 http://deb.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get:440 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:441 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-xs-perl amd64 0.04-6+b1 [12.0 kB] Get:442 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-merge-perl all 0.08-3 [12.7 kB] Get:443 http://deb.debian.org/debian bullseye/main amd64 libarpack2 amd64 3.8.0-1 [103 kB] Get:444 http://deb.debian.org/debian bullseye/main amd64 libsuperlu5 amd64 5.2.2+dfsg1-2 [163 kB] Get:445 http://deb.debian.org/debian bullseye/main amd64 libarmadillo10 amd64 1:10.1.2+dfsg-6+b1 [98.8 kB] Get:446 http://deb.debian.org/debian bullseye/main amd64 libatk1.0-data all 2.36.0-2 [149 kB] Get:447 http://deb.debian.org/debian bullseye/main amd64 libatk1.0-0 amd64 2.36.0-2 [52.2 kB] Get:448 http://deb.debian.org/debian bullseye/main amd64 libatk-bridge2.0-0 amd64 2.38.0-1 [64.6 kB] Get:449 http://deb.debian.org/debian bullseye/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:450 http://deb.debian.org/debian bullseye/main amd64 libxcb-shape0 amd64 1.14-3 [102 kB] Get:451 http://deb.debian.org/debian bullseye/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:452 http://deb.debian.org/debian bullseye/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get:453 http://deb.debian.org/debian bullseye/main amd64 libxkbfile1 amd64 1:1.1.0-1 [75.2 kB] Get:454 http://deb.debian.org/debian bullseye/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:455 http://deb.debian.org/debian bullseye/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:456 http://deb.debian.org/debian bullseye/main amd64 libxv1 amd64 2:1.0.11-1 [24.6 kB] Get:457 http://deb.debian.org/debian bullseye/main amd64 libxxf86dga1 amd64 2:1.1.4-1+b3 [22.1 kB] Get:458 http://deb.debian.org/debian bullseye/main amd64 x11-utils amd64 7.7+5 [202 kB] Get:459 http://deb.debian.org/debian bullseye/main amd64 libatk-wrapper-java all 0.38.0-2+deb11u1 [64.7 kB] Get:460 http://deb.debian.org/debian bullseye/main amd64 libatk-wrapper-java-jni amd64 0.38.0-2+deb11u1 [56.2 kB] Get:461 http://deb.debian.org/debian bullseye/main amd64 libauthen-sasl-perl all 2.1600-1.1 [45.4 kB] Get:462 http://deb.debian.org/debian bullseye/main amd64 libbibutils7 amd64 6.10-2 [387 kB] Get:463 http://deb.debian.org/debian bullseye/main amd64 libbigwig0 amd64 0.4.4+dfsg-2 [27.1 kB] Get:464 http://deb.debian.org/debian bullseye/main amd64 libblas-dev amd64 3.9.0-3+deb11u1 [161 kB] Get:465 http://deb.debian.org/debian bullseye/main amd64 libblosc1 amd64 1.20.1+ds1-2 [48.7 kB] Get:466 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get:467 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:468 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get:469 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-9 [264 kB] Get:470 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get:471 http://deb.debian.org/debian bullseye/main amd64 libbz2-dev amd64 1.0.8-4 [30.1 kB] Get:472 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u3 [102 kB] Get:473 http://deb.debian.org/debian bullseye/main amd64 libc-devtools amd64 2.31-13+deb11u8 [246 kB] Get:474 http://deb.debian.org/debian bullseye/main amd64 libcairo-gobject2 amd64 1.16.0-5 [125 kB] Get:475 http://deb.debian.org/debian bullseye/main amd64 libcfitsio9 amd64 3.490-3 [554 kB] Get:476 http://deb.debian.org/debian bullseye/main amd64 libcharls2 amd64 2.2.0+dfsg-2 [79.4 kB] Get:477 http://deb.debian.org/debian bullseye/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:478 http://deb.debian.org/debian bullseye/main amd64 libcmark-gfm0 amd64 0.29.0.gfm.0-6 [117 kB] Get:479 http://deb.debian.org/debian bullseye/main amd64 libcmark-gfm-extensions0 amd64 0.29.0.gfm.0-6 [46.1 kB] Get:480 http://deb.debian.org/debian bullseye/main amd64 libcolord2 amd64 1.4.5-3 [144 kB] Get:481 http://deb.debian.org/debian bullseye/main amd64 libdap27 amd64 3.20.7-6 [566 kB] Get:482 http://deb.debian.org/debian bullseye/main amd64 libdapclient6v5 amd64 3.20.7-6 [208 kB] Get:483 http://deb.debian.org/debian bullseye/main amd64 libdata-dump-perl all 1.23-1.1 [27.6 kB] Get:484 http://deb.debian.org/debian bullseye/main amd64 libdjvulibre-text all 3.5.28-2 [61.8 kB] Get:485 http://deb.debian.org/debian bullseye/main amd64 libdjvulibre21 amd64 3.5.28-2 [591 kB] Get:486 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:487 http://deb.debian.org/debian bullseye/main amd64 libepoxy0 amd64 1.5.5-1 [193 kB] Get:488 http://deb.debian.org/debian bullseye/main amd64 libepsilon1 amd64 0.9.2+dfsg-5 [41.9 kB] Get:489 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:490 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:491 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:492 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:493 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get:494 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:495 http://deb.debian.org/debian bullseye/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:496 http://deb.debian.org/debian bullseye/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:497 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:498 http://deb.debian.org/debian bullseye/main amd64 libfile-desktopentry-perl all 0.22-2 [19.1 kB] Get:499 http://deb.debian.org/debian bullseye/main amd64 libfile-fcntllock-perl amd64 0.22-3+b7 [35.5 kB] Get:500 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:501 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:502 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:503 http://deb.debian.org/debian bullseye/main amd64 libfile-mimeinfo-perl all 0.30-1 [48.0 kB] Get:504 http://deb.debian.org/debian bullseye/main amd64 libfont-afm-perl all 1.20-3 [14.0 kB] Get:505 http://deb.debian.org/debian bullseye/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB] Get:506 http://deb.debian.org/debian bullseye/main amd64 libfreexl1 amd64 1.0.6-1 [34.2 kB] Get:507 http://deb.debian.org/debian bullseye/main amd64 libfyba0 amd64 4.1.1-7 [114 kB] Get:508 http://deb.debian.org/debian bullseye/main amd64 libgeos-3.9.0 amd64 3.9.0-1 [921 kB] Get:509 http://deb.debian.org/debian bullseye/main amd64 libgeos-c1v5 amd64 3.9.0-1 [377 kB] Get:510 http://deb.debian.org/debian bullseye/main amd64 proj-data all 7.2.1-1 [7940 kB] Get:511 http://deb.debian.org/debian bullseye/main amd64 libproj19 amd64 7.2.1-1 [1132 kB] Get:512 http://deb.debian.org/debian bullseye/main amd64 libgeotiff5 amd64 1.6.0-1 [70.3 kB] Get:513 http://deb.debian.org/debian bullseye/main amd64 libhdf4-0-alt amd64 4.2.15-3 [278 kB] Get:514 http://deb.debian.org/debian bullseye/main amd64 libminizip1 amd64 1.1-8+deb11u1 [20.1 kB] Get:515 http://deb.debian.org/debian bullseye/main amd64 liburiparser1 amd64 0.9.4+dfsg-1+deb11u1 [45.9 kB] Get:516 http://deb.debian.org/debian bullseye/main amd64 libkmlbase1 amd64 1.3.0-9 [48.7 kB] Get:517 http://deb.debian.org/debian bullseye/main amd64 libkmldom1 amd64 1.3.0-9 [156 kB] Get:518 http://deb.debian.org/debian bullseye/main amd64 libkmlengine1 amd64 1.3.0-9 [77.7 kB] Get:519 http://deb.debian.org/debian bullseye/main amd64 mysql-common all 5.8+1.0.7 [7464 B] Get:520 http://deb.debian.org/debian bullseye/main amd64 mariadb-common all 1:10.5.23-0+deb11u1 [37.2 kB] Get:521 http://deb.debian.org/debian bullseye/main amd64 libmariadb3 amd64 1:10.5.23-0+deb11u1 [176 kB] Get:522 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get:523 http://deb.debian.org/debian bullseye/main amd64 libnetcdf18 amd64 1:4.7.4-1 [399 kB] Get:524 http://deb.debian.org/debian bullseye/main amd64 libodbc1 amd64 2.3.6-0.1+b1 [224 kB] Get:525 http://deb.debian.org/debian bullseye/main amd64 libogdi4.1 amd64 4.1.0+ds-5 [213 kB] Get:526 http://deb.debian.org/debian bullseye/main amd64 libpoppler102 amd64 20.09.0-3.1+deb11u1 [1676 kB] Get:527 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.13-0+deb11u1 [182 kB] Get:528 http://deb.debian.org/debian bullseye/main amd64 libqhull8.0 amd64 2020.2-3 [246 kB] Get:529 http://deb.debian.org/debian bullseye/main amd64 librttopo1 amd64 1.1.0-2 [180 kB] Get:530 http://deb.debian.org/debian bullseye/main amd64 libspatialite7 amd64 5.0.1-2 [1796 kB] Get:531 http://deb.debian.org/debian bullseye/main amd64 libxerces-c3.2 amd64 3.2.3+debian-3+deb11u1 [870 kB] Get:532 http://deb.debian.org/debian bullseye/main amd64 odbcinst amd64 2.3.6-0.1+b1 [48.7 kB] Get:533 http://deb.debian.org/debian bullseye/main amd64 odbcinst1debian2 amd64 2.3.6-0.1+b1 [78.6 kB] Get:534 http://deb.debian.org/debian bullseye/main amd64 libgdal28 amd64 3.2.2+dfsg-2+deb11u2 [7256 kB] Get:535 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-xlib-2.0-0 amd64 2.40.2-2 [47.9 kB] Get:536 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-0 amd64 2.40.2-2 [14.1 kB] Get:537 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-bin amd64 2.42.2+dfsg-1+deb11u1 [25.7 kB] Get:538 http://deb.debian.org/debian bullseye/main amd64 libghc-pandoc-citeproc-data all 0.17.0.1-1 [80.3 kB] Get:539 http://deb.debian.org/debian bullseye/main amd64 libhttp-parser2.9 amd64 2.9.4-4+deb11u1 [22.2 kB] Get:540 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:541 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:542 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:543 http://deb.debian.org/debian bullseye/main amd64 libgit2-1.1 amd64 1.1.0+dfsg.1-4+deb11u1 [444 kB] Get:544 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-data all 2.66.8-1+deb11u1 [1177 kB] Get:545 http://deb.debian.org/debian bullseye/main amd64 libgpm2 amd64 1.20.7-8 [35.6 kB] Get:546 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get:547 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get:548 http://deb.debian.org/debian bullseye/main amd64 libjson-glib-1.0-common all 1.6.2-1 [56.9 kB] Get:549 http://deb.debian.org/debian bullseye/main amd64 libjson-glib-1.0-0 amd64 1.6.2-1 [65.4 kB] Get:550 http://deb.debian.org/debian bullseye/main amd64 libsoup2.4-1 amd64 2.72.0-2 [280 kB] Get:551 http://deb.debian.org/debian bullseye/main amd64 libsoup-gnome2.4-1 amd64 2.72.0-2 [22.2 kB] Get:552 http://deb.debian.org/debian bullseye/main amd64 librest-0.7-0 amd64 0.8.1-1.1 [33.8 kB] Get:553 http://deb.debian.org/debian bullseye/main amd64 libwayland-client0 amd64 1.18.0-2~exp1.1 [26.9 kB] Get:554 http://deb.debian.org/debian bullseye/main amd64 libwayland-cursor0 amd64 1.18.0-2~exp1.1 [14.6 kB] Get:555 http://deb.debian.org/debian bullseye/main amd64 libwayland-egl1 amd64 1.18.0-2~exp1.1 [8448 B] Get:556 http://deb.debian.org/debian bullseye/main amd64 libxcursor1 amd64 1:1.2.0-2 [37.3 kB] Get:557 http://deb.debian.org/debian bullseye/main amd64 xkb-data all 2.29-2 [655 kB] Get:558 http://deb.debian.org/debian bullseye/main amd64 libxkbcommon0 amd64 1.0.3-2 [101 kB] Get:559 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-common all 3.24.24-4+deb11u3 [3757 kB] Get:560 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-0 amd64 3.24.24-4+deb11u3 [2716 kB] Get:561 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-bin amd64 3.24.24-4+deb11u3 [125 kB] Get:562 http://deb.debian.org/debian bullseye/main amd64 libgts-bin amd64 0.7.6+darcs121130-4+b1 [50.3 kB] Get:563 http://deb.debian.org/debian bullseye/main amd64 libhawtjni-runtime-java all 1.17-1 [35.3 kB] Get:564 http://deb.debian.org/debian bullseye/main amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-4+deb11u1 [141 kB] Get:565 http://deb.debian.org/debian bullseye/main amd64 libhdf5-fortran-102 amd64 1.10.6+repack-4+deb11u1 [105 kB] Get:566 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-4+deb11u1 [56.8 kB] Get:567 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-4+deb11u1 [37.7 kB] Get:568 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:569 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get:570 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get:571 http://deb.debian.org/debian bullseye/main amd64 libhdf5-dev amd64 1.10.6+repack-4+deb11u1 [2438 kB] Get:572 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:573 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get:574 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:575 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:576 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get:577 http://deb.debian.org/debian bullseye/main amd64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:578 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:579 http://deb.debian.org/debian bullseye/main amd64 libhtml-format-perl all 2.12-1.1 [43.8 kB] Get:580 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:581 http://deb.debian.org/debian bullseye/main amd64 libhtscodecs2 amd64 0.5-3 [50.6 kB] Get:582 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:583 http://deb.debian.org/debian bullseye/main amd64 libhttp-daemon-perl all 6.12-1+deb11u1 [23.4 kB] Get:584 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:585 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.141.03-1~deb11u1 [27.5 kB] Get:586 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:587 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:588 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get:589 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get:590 http://deb.debian.org/debian bullseye/main amd64 libilmbase25 amd64 2.5.4-1 [202 kB] Get:591 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:592 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:593 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get:594 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get:595 http://deb.debian.org/debian bullseye/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:596 http://deb.debian.org/debian bullseye/main amd64 libjansi-native-java all 1.8-1 [26.0 kB] Get:597 http://deb.debian.org/debian bullseye/main amd64 libjansi-java all 1.18-1 [66.6 kB] Get:598 http://deb.debian.org/debian bullseye/main amd64 libjemalloc2 amd64 5.2.1-3 [248 kB] Get:599 http://deb.debian.org/debian bullseye/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:600 http://deb.debian.org/debian bullseye/main amd64 libjs-d3-format all 1:1.4.1-3 [16.9 kB] Get:601 http://deb.debian.org/debian bullseye/main amd64 libjs-es5-shim all 4.5.15-1 [43.6 kB] Get:602 http://deb.debian.org/debian bullseye/main amd64 libjs-filesaver all 2.0.2+dfsg-3 [9420 B] Get:603 http://deb.debian.org/debian bullseye/main amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [397 kB] Get:604 http://deb.debian.org/debian bullseye/main amd64 libjs-inherits all 2.0.4-1 [3228 B] Get:605 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:606 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables all 1.10.21+dfsg-2+deb11u1 [138 kB] Get:607 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:608 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-metadata all 12-3 [7660 B] Get:609 http://deb.debian.org/debian bullseye/main amd64 libjs-sifter.js all 0.6.0+dfsg-1 [12.1 kB] Get:610 http://deb.debian.org/debian bullseye/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get:611 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:612 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB] Get:613 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:614 http://deb.debian.org/debian bullseye/main amd64 libjs-json all 0~20190826+~1.0.5-2 [20.5 kB] Get:615 http://deb.debian.org/debian bullseye/main amd64 libjs-lunr all 2.3.8~dfsg-2 [58.1 kB] Get:616 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:617 http://deb.debian.org/debian bullseye/main amd64 libjs-modernizr all 2.6.2+ds1-4 [47.1 kB] Get:618 http://deb.debian.org/debian bullseye/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:619 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:620 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:621 http://deb.debian.org/debian bullseye/main amd64 libjs-sprintf-js all 1.1.2+ds1-2 [12.3 kB] Get:622 http://deb.debian.org/debian bullseye/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:623 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get:624 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.12~dfsg-1~deb11u4 [8332 kB] Get:625 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.12~dfsg-1~deb11u4 [148 kB] Get:626 http://deb.debian.org/debian bullseye/main amd64 node-inherits all 2.0.4-1 [4204 B] Get:627 http://deb.debian.org/debian bullseye/main amd64 libjs-util all 0.10.3-4 [9620 B] Get:628 http://deb.debian.org/debian bullseye/main amd64 libjxr0 amd64 1.1-6+b1 [160 kB] Get:629 http://deb.debian.org/debian bullseye/main amd64 libjxr-tools amd64 1.1-6+b1 [17.0 kB] Get:630 http://deb.debian.org/debian bullseye/main amd64 liblapack-dev amd64 3.9.0-3+deb11u1 [4246 kB] Get:631 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:632 http://deb.debian.org/debian bullseye/main amd64 libldap-common all 2.4.57+dfsg-3+deb11u1 [95.8 kB] Get:633 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:634 http://deb.debian.org/debian bullseye/main amd64 liblua5.3-0 amd64 5.3.3-1.1+deb11u1 [123 kB] Get:635 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get:636 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:637 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:638 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get:639 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:640 http://deb.debian.org/debian bullseye/main amd64 liblzma-dev amd64 5.2.5-2.1~deb11u1 [229 kB] Get:641 http://deb.debian.org/debian bullseye/main amd64 libopenexr25 amd64 2.5.4-2+deb11u1 [689 kB] Get:642 http://deb.debian.org/debian bullseye/main amd64 libwmf0.2-7 amd64 0.2.8.4-17 [165 kB] Get:643 http://deb.debian.org/debian bullseye/main amd64 libmagickcore-6.q16-6-extra amd64 8:6.9.11.60+dfsg-1.3+deb11u2 [217 kB] Get:644 http://deb.debian.org/debian bullseye/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:645 http://deb.debian.org/debian bullseye/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:646 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:647 http://deb.debian.org/debian bullseye/main amd64 libncurses-dev amd64 6.2+20201114-2+deb11u2 [344 kB] Get:648 http://deb.debian.org/debian bullseye/main amd64 libncurses5-dev amd64 6.2+20201114-2+deb11u2 [948 B] Get:649 http://deb.debian.org/debian bullseye/main amd64 libxml-parser-perl amd64 2.46-2 [206 kB] Get:650 http://deb.debian.org/debian bullseye/main amd64 libxml-twig-perl all 1:3.52-1 [181 kB] Get:651 http://deb.debian.org/debian bullseye/main amd64 libnet-dbus-perl amd64 1.2.0-1+b1 [182 kB] Get:652 http://deb.debian.org/debian bullseye/main amd64 libnetpbm10 amd64 2:10.0-15.4 [86.2 kB] Get:653 http://deb.debian.org/debian bullseye/main amd64 libnlopt0 amd64 2.7.0-4+b2 [172 kB] Get:654 http://deb.debian.org/debian bullseye/main amd64 libnotify4 amd64 0.7.9-3 [23.7 kB] Get:655 http://deb.debian.org/debian bullseye/main amd64 libnotify-bin amd64 0.7.9-3 [14.2 kB] Get:656 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1+deb11u1 [553 kB] Get:657 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get:658 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get:659 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:660 http://deb.debian.org/debian bullseye/main amd64 libpcg-cpp-dev all 0.98.1-2 [21.3 kB] Get:661 http://deb.debian.org/debian bullseye/main amd64 libpcre16-3 amd64 2:8.39-13 [259 kB] Get:662 http://deb.debian.org/debian bullseye/main amd64 libpcre2-16-0 amd64 10.36-2+deb11u1 [232 kB] Get:663 http://deb.debian.org/debian bullseye/main amd64 libpcre2-32-0 amd64 10.36-2+deb11u1 [220 kB] Get:664 http://deb.debian.org/debian bullseye/main amd64 libpcre2-posix2 amd64 10.36-2+deb11u1 [49.1 kB] Get:665 http://deb.debian.org/debian bullseye/main amd64 libpcre2-dev amd64 10.36-2+deb11u1 [733 kB] Get:666 http://deb.debian.org/debian bullseye/main amd64 libpcre32-3 amd64 2:8.39-13 [250 kB] Get:667 http://deb.debian.org/debian bullseye/main amd64 libpcrecpp0v5 amd64 2:8.39-13 [152 kB] Get:668 http://deb.debian.org/debian bullseye/main amd64 libpcre3-dev amd64 2:8.39-13 [650 kB] Get:669 http://deb.debian.org/debian bullseye/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get:670 http://deb.debian.org/debian bullseye/main amd64 libpng-dev amd64 1.6.37-3 [298 kB] Get:671 http://deb.debian.org/debian bullseye/main amd64 libpng-tools amd64 1.6.37-3 [141 kB] Get:672 http://deb.debian.org/debian bullseye/main amd64 libptexenc1 amd64 2020.20200327.54578-7+deb11u1 [64.7 kB] Get:673 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get:674 http://deb.debian.org/debian bullseye/main amd64 libreadline-dev amd64 8.1-1 [148 kB] Get:675 http://deb.debian.org/debian bullseye/main amd64 librsvg2-2 amd64 2.50.3+dfsg-1+deb11u1 [2462 kB] Get:676 http://deb.debian.org/debian bullseye/main amd64 librsvg2-common amd64 2.50.3+dfsg-1+deb11u1 [31.2 kB] Get:677 http://deb.debian.org/debian bullseye/main amd64 rubygems-integration all 1.18 [6704 B] Get:678 http://deb.debian.org/debian bullseye/main amd64 ruby2.7 amd64 2.7.4-1+deb11u1 [747 kB] Get:679 http://deb.debian.org/debian bullseye/main amd64 ruby-rubygems all 3.2.5-2 [281 kB] Get:680 http://deb.debian.org/debian bullseye/main amd64 ruby amd64 1:2.7+2 [11.7 kB] Get:681 http://deb.debian.org/debian bullseye/main amd64 rake all 13.0.3-1 [84.7 kB] Get:682 http://deb.debian.org/debian bullseye/main amd64 ruby-minitest all 5.13.0-1 [57.3 kB] Get:683 http://deb.debian.org/debian bullseye/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:684 http://deb.debian.org/debian bullseye/main amd64 ruby-power-assert all 1.1.7-2 [11.5 kB] Get:685 http://deb.debian.org/debian bullseye/main amd64 ruby-test-unit all 3.3.9-1 [86.1 kB] Get:686 http://deb.debian.org/debian bullseye/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:687 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:688 http://deb.debian.org/debian bullseye/main amd64 libruby2.7 amd64 2.7.4-1+deb11u1 [4202 kB] Get:689 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules amd64 2.1.27+dfsg-2.1+deb11u1 [104 kB] Get:690 http://deb.debian.org/debian bullseye/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get:691 http://deb.debian.org/debian bullseye/main amd64 libstaden-read14 amd64 1.14.13-4 [265 kB] Get:692 http://deb.debian.org/debian bullseye/main amd64 libsynctex2 amd64 2020.20200327.54578-7+deb11u1 [83.4 kB] Get:693 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:694 http://deb.debian.org/debian bullseye/main amd64 libteckit0 amd64 2.5.10+ds1-3 [329 kB] Get:695 http://deb.debian.org/debian bullseye/main amd64 libtexlua53 amd64 2020.20200327.54578-7+deb11u1 [131 kB] Get:696 http://deb.debian.org/debian bullseye/main amd64 libtexluajit2 amd64 2020.20200327.54578-7+deb11u1 [267 kB] Get:697 http://deb.debian.org/debian bullseye/main amd64 libtext-iconv-perl amd64 1.7-7+b1 [16.1 kB] Get:698 http://deb.debian.org/debian bullseye/main amd64 libtie-ixhash-perl all 1.23-2.1 [11.8 kB] Get:699 http://deb.debian.org/debian bullseye/main amd64 libudunits2-data all 2.2.28-3 [27.6 kB] Get:700 http://deb.debian.org/debian bullseye/main amd64 libudunits2-0 amd64 2.2.28-3 [59.2 kB] Get:701 http://deb.debian.org/debian bullseye/main amd64 libvte-2.91-common amd64 0.62.3-1 [64.8 kB] Get:702 http://deb.debian.org/debian bullseye/main amd64 libvte-2.91-0 amd64 0.62.3-1 [209 kB] Get:703 http://deb.debian.org/debian bullseye/main amd64 libx11-protocol-perl all 0.56-7.1 [140 kB] Get:704 http://deb.debian.org/debian bullseye/main amd64 libxcb-randr0 amd64 1.14-3 [113 kB] Get:705 http://deb.debian.org/debian bullseye/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:706 http://deb.debian.org/debian bullseye/main amd64 libzzip-0-13 amd64 0.13.62-3.3+deb11u1 [55.9 kB] Get:707 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:708 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:709 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:710 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:711 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:712 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get:713 http://deb.debian.org/debian bullseye/main amd64 xfonts-encodings all 1:1.0.4-2.1 [573 kB] Get:714 http://deb.debian.org/debian bullseye/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:715 http://deb.debian.org/debian bullseye/main amd64 lmodern all 2.004.5-6.1 [9489 kB] Get:716 http://deb.debian.org/debian bullseye/main amd64 manpages-dev all 5.10-1 [2309 kB] Get:717 http://deb.debian.org/debian bullseye/main amd64 mesa-vulkan-drivers amd64 20.3.5-1 [4086 kB] Get:718 http://deb.debian.org/debian bullseye/main amd64 node-ansi-colors all 4.1.1-2 [13.2 kB] Get:719 http://deb.debian.org/debian bullseye/main amd64 node-browser-stdout all 1.3.1-2 [3268 B] Get:720 http://deb.debian.org/debian bullseye/main amd64 node-camelcase all 6.2.0-2 [5512 B] Get:721 http://deb.debian.org/debian bullseye/main amd64 node-color-name all 1.1.4+~1.1.1-1 [5788 B] Get:722 http://deb.debian.org/debian bullseye/main amd64 node-color-convert all 1.9.3-1 [10.2 kB] Get:723 http://deb.debian.org/debian bullseye/main amd64 node-ansi-styles all 4.2.1-1 [7600 B] Get:724 http://deb.debian.org/debian bullseye/main amd64 node-escape-string-regexp all 4.0.0-1 [4116 B] Get:725 http://deb.debian.org/debian bullseye/main amd64 node-has-flag all 4.0.0-1 [4076 B] Get:726 http://deb.debian.org/debian bullseye/main amd64 node-supports-color all 8.1.0+~7.2.0-1 [6736 B] Get:727 http://deb.debian.org/debian bullseye/main amd64 node-chalk all 4.1.0-1 [15.0 kB] Get:728 http://deb.debian.org/debian bullseye/main amd64 node-is-extglob all 2.1.1-1 [4128 B] Get:729 http://deb.debian.org/debian bullseye/main amd64 node-is-glob all 4.0.1-1 [6312 B] Get:730 http://deb.debian.org/debian bullseye/main amd64 node-binary-extensions all 2.2.0-1 [4352 B] Get:731 http://deb.debian.org/debian bullseye/main amd64 node-is-binary-path all 2.1.0-1 [3432 B] Get:732 http://deb.debian.org/debian bullseye/main amd64 node-normalize-path all 3.0.0-2 [5752 B] Get:733 http://deb.debian.org/debian bullseye/main amd64 node-anymatch all 3.1.1+~2.2.2-1 [28.5 kB] Get:734 http://deb.debian.org/debian bullseye/main amd64 node-graceful-fs all 4.2.4+repack-1 [13.1 kB] Get:735 http://deb.debian.org/debian bullseye/main amd64 node-set-immediate-shim all 2.0.0-1 [3600 B] Get:736 http://deb.debian.org/debian bullseye/main amd64 node-readdirp all 3.5.0-2 [11.3 kB] Get:737 http://deb.debian.org/debian bullseye/main amd64 node-async-each all 1.0.3-1 [4024 B] Get:738 http://deb.debian.org/debian bullseye/main amd64 node-is-buffer all 2.0.5-1 [4048 B] Get:739 http://deb.debian.org/debian bullseye/main amd64 node-kind-of all 6.0.3+dfsg-1 [10.0 kB] Get:740 http://deb.debian.org/debian bullseye/main amd64 node-is-number all 7.0.0-1.1 [5860 B] Get:741 http://deb.debian.org/debian bullseye/main amd64 node-repeat-string all 1.6.1-1 [5180 B] Get:742 http://deb.debian.org/debian bullseye/main amd64 node-to-regex-range all 5.0.1-2 [10.2 kB] Get:743 http://deb.debian.org/debian bullseye/main amd64 node-fill-range all 7.0.1-2 [7872 B] Get:744 http://deb.debian.org/debian bullseye/main amd64 node-braces all 3.0.2+~3.0.0-1 [20.6 kB] Get:745 http://deb.debian.org/debian bullseye/main amd64 node-path-is-absolute all 2.0.0-1 [3864 B] Get:746 http://deb.debian.org/debian bullseye/main amd64 node-path-dirname all 1.0.2-1.1 [3972 B] Get:747 http://deb.debian.org/debian bullseye/main amd64 node-glob-parent all 5.1.1+~5.1.0-2 [6672 B] Get:748 http://deb.debian.org/debian bullseye/main amd64 node-chokidar all 3.4.3-3 [32.0 kB] Get:749 http://deb.debian.org/debian bullseye/main amd64 node-ms all 2.1.3+~cs0.7.31-1 [5612 B] Get:750 http://deb.debian.org/debian bullseye/main amd64 node-debug all 4.3.1+~cs4.1.5-1 [17.3 kB] Get:751 http://deb.debian.org/debian bullseye/main amd64 node-decamelize all 4.0.0-1 [3944 B] Get:752 http://deb.debian.org/debian bullseye/main amd64 node-diff all 4.0.2~dfsg-2 [65.0 kB] Get:753 http://deb.debian.org/debian bullseye/main amd64 node-p-limit all 3.1.0+~cs2.3.0-1 [6904 B] Get:754 http://deb.debian.org/debian bullseye/main amd64 node-p-locate all 5.0.0-1 [5080 B] Get:755 http://deb.debian.org/debian bullseye/main amd64 node-path-exists all 4.0.0-2 [3840 B] Get:756 http://deb.debian.org/debian bullseye/main amd64 node-locate-path all 6.0.0-1 [5264 B] Get:757 http://deb.debian.org/debian bullseye/main amd64 node-find-up all 5.0.0-1 [5840 B] Get:758 http://deb.debian.org/debian bullseye/main amd64 node-fs.realpath all 1.0.0-1.1 [5780 B] Get:759 http://deb.debian.org/debian bullseye/main amd64 node-wrappy all 1.0.2-1.1 [3352 B] Get:760 http://deb.debian.org/debian bullseye/main amd64 node-once all 1.4.0-3 [4344 B] Get:761 http://deb.debian.org/debian bullseye/main amd64 node-inflight all 1.0.6-1.1 [3568 B] Get:762 http://deb.debian.org/debian bullseye/main amd64 node-balanced-match all 1.0.0-1 [4528 B] Get:763 http://deb.debian.org/debian bullseye/main amd64 node-brace-expansion all 2.0.0-1 [7184 B] Get:764 http://deb.debian.org/debian bullseye/main amd64 node-minimatch all 3.0.4+~3.0.3-1+deb11u2 [16.1 kB] Get:765 http://deb.debian.org/debian bullseye/main amd64 node-glob all 7.1.6+~7.1.3-1 [129 kB] Get:766 http://deb.debian.org/debian bullseye/main amd64 node-growl all 1.10.5-2 [7356 B] Get:767 http://deb.debian.org/debian bullseye/main amd64 node-he all 1.2.0-1 [36.7 kB] Get:768 http://deb.debian.org/debian bullseye/main amd64 node-is-plain-obj all 3.0.0-1 [3916 B] Get:769 http://deb.debian.org/debian bullseye/main amd64 node-sprintf-js all 1.1.2+ds1-2 [1836 B] Get:770 http://deb.debian.org/debian bullseye/main amd64 node-argparse all 2.0.1-1 [34.5 kB] Get:771 http://deb.debian.org/debian bullseye/main amd64 node-esprima all 4.0.1+ds+~4.0.2-2 [69.0 kB] Get:772 http://deb.debian.org/debian bullseye/main amd64 node-js-yaml all 3.14.1+dfsg+~3.12.6-2 [44.8 kB] Get:773 http://deb.debian.org/debian bullseye/main amd64 node-safe-buffer all 5.2.1+~cs2.1.2-1 [15.5 kB] Get:774 http://deb.debian.org/debian bullseye/main amd64 node-randombytes all 2.1.0-1 [4104 B] Get:775 http://deb.debian.org/debian bullseye/main amd64 node-serialize-javascript all 5.0.1-2 [11.5 kB] Get:776 http://deb.debian.org/debian bullseye/main amd64 node-strip-json-comments all 3.1.1-1 [5168 B] Get:777 http://deb.debian.org/debian bullseye/main amd64 node-isexe all 2.0.0-5 [4632 B] Get:778 http://deb.debian.org/debian bullseye/main amd64 node-which all 2.0.2+~cs1.3.2-1 [8436 B] Get:779 http://deb.debian.org/debian bullseye/main amd64 node-ansi-regex all 5.0.1-1~deb11u1 [4704 B] Get:780 http://deb.debian.org/debian bullseye/main amd64 node-strip-ansi all 6.0.0-2 [4044 B] Get:781 http://deb.debian.org/debian bullseye/main amd64 node-clone all 2.1.2-2 [8132 B] Get:782 http://deb.debian.org/debian bullseye/main amd64 node-defaults all 1.0.3-2 [3612 B] Get:783 http://deb.debian.org/debian bullseye/main amd64 node-wcwidth.js all 1.0.0-1.1 [6652 B] Get:784 http://deb.debian.org/debian bullseye/main amd64 node-string-width all 4.2.0-1 [9716 B] Get:785 http://deb.debian.org/debian bullseye/main amd64 node-wide-align all 1.1.3-1 [3896 B] Get:786 http://deb.debian.org/debian bullseye/main amd64 node-require-directory all 2.1.1-1.1 [5596 B] Get:787 http://deb.debian.org/debian bullseye/main amd64 node-get-caller-file all 1.0.2-1.1 [3056 B] Get:788 http://deb.debian.org/debian bullseye/main amd64 node-set-blocking all 2.0.0-1.1 [4036 B] Get:789 http://deb.debian.org/debian bullseye/main amd64 node-require-main-filename all 2.0.0-1 [4108 B] Get:790 http://deb.debian.org/debian bullseye/main amd64 node-wrap-ansi all 4.0.0-2 [5540 B] Get:791 http://deb.debian.org/debian bullseye/main amd64 node-cliui all 4.1.0-2 [7964 B] Get:792 http://deb.debian.org/debian bullseye/main amd64 node-which-module all 2.0.0-1 [3792 B] Get:793 http://deb.debian.org/debian bullseye/main amd64 node-end-of-stream all 1.4.4-1 [4356 B] Get:794 http://deb.debian.org/debian bullseye/main amd64 node-pump all 3.0.0-4 [4936 B] Get:795 http://deb.debian.org/debian bullseye/main amd64 node-get-stream all 6.0.0-1 [7172 B] Get:796 http://deb.debian.org/debian bullseye/main amd64 node-is-stream all 2.0.0-1 [4004 B] Get:797 http://deb.debian.org/debian bullseye/main amd64 node-merge-stream all 2.0.0+~1.1.2-1 [5036 B] Get:798 http://deb.debian.org/debian bullseye/main amd64 node-mimic-fn all 3.1.0-1 [5180 B] Get:799 http://deb.debian.org/debian bullseye/main amd64 node-npm-run-path all 2.0.2-2 [4412 B] Get:800 http://deb.debian.org/debian bullseye/main amd64 node-shebang-regex all 3.0.0-1 [3352 B] Get:801 http://deb.debian.org/debian bullseye/main amd64 node-shebang-command all 1.2.0-1.1 [3132 B] Get:802 http://deb.debian.org/debian bullseye/main amd64 node-signal-exit all 3.0.3-1 [6172 B] Get:803 http://deb.debian.org/debian bullseye/main amd64 node-execa all 4.1.0+dfsg+~cs19.3.6-5 [28.1 kB] Get:804 http://deb.debian.org/debian bullseye/main amd64 node-invert-kv all 3.0.1-1 [3904 B] Get:805 http://deb.debian.org/debian bullseye/main amd64 node-lcid all 3.1.1-1 [5280 B] Get:806 http://deb.debian.org/debian bullseye/main amd64 node-mem all 1.1.0-1.1 [4308 B] Get:807 http://deb.debian.org/debian bullseye/main amd64 node-os-locale all 5.0.0-1 [4876 B] Get:808 http://deb.debian.org/debian bullseye/main amd64 node-y18n all 4.0.0-4 [6256 B] Get:809 http://deb.debian.org/debian bullseye/main amd64 node-yargs-parser all 18.1.3+~15.0.0-1 [24.0 kB] Get:810 http://deb.debian.org/debian bullseye/main amd64 node-yargs all 15.3.1+repack-2 [109 kB] Get:811 http://deb.debian.org/debian bullseye/main amd64 mocha all 8.2.1+ds1+~cs29.4.27-3 [157 kB] Get:812 http://deb.debian.org/debian bullseye/main amd64 openmpi-common all 4.1.0-10 [179 kB] Get:813 http://deb.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.1.0-10 [238 kB] Get:814 http://deb.debian.org/debian bullseye/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get:815 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get:816 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get:817 http://deb.debian.org/debian bullseye/main amd64 python3-future all 0.18.2-5 [349 kB] Get:818 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:819 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:820 http://deb.debian.org/debian bullseye/main amd64 python3-lzstring all 1.0.4-1.1 [5456 B] Get:821 http://deb.debian.org/debian bullseye/main amd64 python3-markdown all 3.3.4-1 [71.4 kB] Get:822 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:823 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:824 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:825 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:826 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:827 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:828 http://deb.debian.org/debian bullseye/main amd64 python3-simplejson amd64 3.17.2-1 [61.7 kB] Get:829 http://deb.debian.org/debian bullseye/main amd64 python3-colormath all 3.0.0-1.1 [35.3 kB] Get:830 http://deb.debian.org/debian bullseye/main amd64 python3-spectra all 0.0.11-2 [16.4 kB] Get:831 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:832 http://deb.debian.org/debian bullseye/main amd64 multiqc all 1.9+dfsg-3 [554 kB] Get:833 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:834 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:835 http://deb.debian.org/debian bullseye/main amd64 netpbm amd64 2:10.0-15.4 [1011 kB] Get:836 http://deb.debian.org/debian bullseye/main amd64 node-object-assign all 4.1.1-3 [4460 B] Get:837 http://deb.debian.org/debian bullseye/main amd64 node-util all 0.10.3-4 [2960 B] Get:838 http://deb.debian.org/debian bullseye/main amd64 node-assert all 1.5.0-1 [8892 B] Get:839 http://deb.debian.org/debian bullseye/main amd64 node-clipboard all 2.0.6+ds+~cs7.6.4-1 [15.6 kB] Get:840 http://deb.debian.org/debian bullseye/main amd64 node-commander all 6.2.1-2 [38.3 kB] Get:841 http://deb.debian.org/debian bullseye/main amd64 node-d3-array all 1.2.4-3 [19.2 kB] Get:842 http://deb.debian.org/debian bullseye/main amd64 node-d3-axis all 1.0.12-3 [10.1 kB] Get:843 http://deb.debian.org/debian bullseye/main amd64 node-d3-dispatch all 1.0.6-2 [7856 B] Get:844 http://deb.debian.org/debian bullseye/main amd64 node-d3-selection all 1.4.0-6 [30.7 kB] Get:845 http://deb.debian.org/debian bullseye/main amd64 node-d3-drag all 1.2.5-2 [13.9 kB] Get:846 http://deb.debian.org/debian bullseye/main amd64 node-d3-color all 1.2.8-2 [15.0 kB] Get:847 http://deb.debian.org/debian bullseye/main amd64 node-d3-interpolate all 1.4.0-2 [18.5 kB] Get:848 http://deb.debian.org/debian bullseye/main amd64 node-d3-ease all 1.0.5-3 [9932 B] Get:849 http://deb.debian.org/debian bullseye/main amd64 node-d3-timer all 1.0.10-1 [8608 B] Get:850 http://deb.debian.org/debian bullseye/main amd64 node-d3-transition all 1.3.2-3 [22.2 kB] Get:851 http://deb.debian.org/debian bullseye/main amd64 node-d3-brush all 1.1.5-2 [181 kB] Get:852 http://deb.debian.org/debian bullseye/main amd64 node-d3-path all 1.0.9-2 [8212 B] Get:853 http://deb.debian.org/debian bullseye/main amd64 node-d3-chord all 1.0.6-3 [10.0 kB] Get:854 http://deb.debian.org/debian bullseye/main amd64 node-d3-collection all 1.0.7-3 [11.7 kB] Get:855 http://deb.debian.org/debian bullseye/main amd64 node-d3-contour all 1.3.2-4 [13.6 kB] Get:856 http://deb.debian.org/debian bullseye/main amd64 node-iconv-lite all 0.5.1-3 [128 kB] Get:857 http://deb.debian.org/debian bullseye/main amd64 node-d3-queue all 3.0.7-11 [9828 B] Get:858 http://deb.debian.org/debian bullseye/main amd64 node-rw all 1.3.3-2 [7096 B] Get:859 http://deb.debian.org/debian bullseye/main amd64 node-d3-dsv all 1.1.1-5 [14.5 kB] Get:860 http://deb.debian.org/debian bullseye/main amd64 node-d3-fetch all 1.2.0-1 [7344 B] Get:861 http://deb.debian.org/debian bullseye/main amd64 node-d3-quadtree all 1.0.7-2 [13.1 kB] Get:862 http://deb.debian.org/debian bullseye/main amd64 node-d3-force all 1.2.1-2 [368 kB] Get:863 http://deb.debian.org/debian bullseye/main amd64 node-d3-format all 1:1.4.1-3 [9004 B] Get:864 http://deb.debian.org/debian bullseye/main amd64 node-d3-geo all 1.11.9-4 [53.6 kB] Get:865 http://deb.debian.org/debian bullseye/main amd64 node-d3-hierarchy all 1.1.8-3 [28.6 kB] Get:866 http://deb.debian.org/debian bullseye/main amd64 node-d3-polygon all 1.0.5-3 [7396 B] Get:867 http://deb.debian.org/debian bullseye/main amd64 node-d3-random all 1.1.2-3 [7184 B] Get:868 http://deb.debian.org/debian bullseye/main amd64 node-d3-time all 1.0.11-4 [14.6 kB] Get:869 http://deb.debian.org/debian bullseye/main amd64 node-d3-time-format all 2.1.3-3 [18.9 kB] Get:870 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale all 2.2.2-3 [31.5 kB] Get:871 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale-chromatic all 1.5.0-2 [18.5 kB] Get:872 http://deb.debian.org/debian bullseye/main amd64 node-d3-shape all 1.3.7-2 [40.4 kB] Get:873 http://deb.debian.org/debian bullseye/main amd64 node-d3-voronoi all 1.1.4-3 [17.1 kB] Get:874 http://deb.debian.org/debian bullseye/main amd64 node-d3-zoom all 1.8.3-2 [20.1 kB] Get:875 http://deb.debian.org/debian bullseye/main amd64 node-d3 all 5.16.0-4 [208 kB] Get:876 http://deb.debian.org/debian bullseye/main amd64 node-lodash all 4.17.21+dfsg+~cs8.31.173-1 [385 kB] Get:877 http://deb.debian.org/debian bullseye/main amd64 node-graphlibrary all 2.2.0+really2.1.8+dfsg-3 [53.2 kB] Get:878 http://deb.debian.org/debian bullseye/main amd64 node-dagre-layout all 0.8.8+really0.8.5+dfsg-4 [42.4 kB] Get:879 http://deb.debian.org/debian bullseye/main amd64 node-dagre-d3-renderer all 0.6.4+dfsg-3 [601 kB] Get:880 http://deb.debian.org/debian bullseye/main amd64 node-highlight.js all 9.18.5+dfsg1-1 [333 kB] Get:881 http://deb.debian.org/debian bullseye/main amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:882 http://deb.debian.org/debian bullseye/main amd64 nodejs-doc all 12.22.12~dfsg-1~deb11u4 [2547 kB] Get:883 http://deb.debian.org/debian bullseye/main amd64 notification-daemon amd64 3.20.0-4 [61.0 kB] Get:884 http://deb.debian.org/debian bullseye/main amd64 pandoc-data all 2.9.2.1-1+deb11u1 [377 kB] Get:885 http://deb.debian.org/debian bullseye/main amd64 pandoc amd64 2.9.2.1-1+deb11u1 [18.5 MB] Get:886 http://deb.debian.org/debian bullseye/main amd64 pandoc-citeproc amd64 0.17.0.1-1+b2 [14.2 MB] Get:887 http://deb.debian.org/debian bullseye/main amd64 python3-appdirs all 1.4.4-1 [12.7 kB] Get:888 http://deb.debian.org/debian bullseye/main amd64 python3-configargparse all 1.2.3-1 [25.2 kB] Get:889 http://deb.debian.org/debian bullseye/main amd64 python3-datrie amd64 0.8.2-1+b1 [98.5 kB] Get:890 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get:891 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get:892 http://deb.debian.org/debian bullseye/main amd64 python3-smmap all 4.0.0-1 [21.0 kB] Get:893 http://deb.debian.org/debian bullseye/main amd64 python3-gitdb all 4.0.5-1 [46.5 kB] Get:894 http://deb.debian.org/debian bullseye/main amd64 python3-git all 3.1.14-1 [119 kB] Get:895 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:896 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:897 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:898 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:899 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:900 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get:901 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get:902 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:903 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:904 http://deb.debian.org/debian bullseye/main amd64 python3-jupyter-core all 4.7.1-1+deb11u1 [44.2 kB] Get:905 http://deb.debian.org/debian bullseye/main amd64 python3-nbformat all 5.1.2-1 [51.6 kB] Get:906 http://deb.debian.org/debian bullseye/main amd64 python3-pulp all 1.6.0+dfsg1-5 [54.0 kB] Get:907 http://deb.debian.org/debian bullseye/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get:908 http://deb.debian.org/debian bullseye/main amd64 python3-toposort all 1.6-1 [7620 B] Get:909 http://deb.debian.org/debian bullseye/main amd64 python3-wrapt amd64 1.12.1-4+b1 [39.3 kB] Get:910 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:911 http://deb.debian.org/debian bullseye/main amd64 snakemake all 5.24.1-2 [6107 kB] Get:912 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:913 http://deb.debian.org/debian bullseye/main amd64 python3-deeptoolsintervals amd64 0.1.9-3+b2 [50.6 kB] Get:914 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get:915 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get:916 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get:917 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:918 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get:919 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get:920 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get:921 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:922 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get:923 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get:924 http://deb.debian.org/debian bullseye/main amd64 python3-numpydoc all 1.1.0-3 [40.0 kB] Get:925 http://deb.debian.org/debian bullseye/main amd64 python3-retrying all 1.3.3-4 [8876 B] Get:926 http://deb.debian.org/debian bullseye/main amd64 python3-plotly all 4.14.3+dfsg-1 [2450 kB] Get:927 http://deb.debian.org/debian bullseye/main amd64 python3-py2bit amd64 0.3.0-6+b1 [18.3 kB] Get:928 http://deb.debian.org/debian bullseye/main amd64 python3-pybigwig amd64 0.3.17-1+b4 [35.8 kB] Get:929 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get:930 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:931 http://deb.debian.org/debian bullseye/main amd64 python3-deeptools all 3.5.0-1 [158 kB] Get:932 http://deb.debian.org/debian bullseye/main amd64 salmon amd64 1.4.0+ds1-1+b4 [2221 kB] Get:933 http://deb.debian.org/debian bullseye/main amd64 rna-star amd64 2.7.8a+dfsg-2 [1279 kB] Get:934 http://deb.debian.org/debian bullseye/main amd64 trim-galore all 0.6.6-1 [17.8 MB] Get:935 http://deb.debian.org/debian bullseye/main amd64 python3-htseq amd64 0.13.5-1 [221 kB] Get:936 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:937 http://deb.debian.org/debian bullseye/main amd64 r-bioc-s4vectors amd64 0.28.1-1 [2027 kB] Get:938 http://deb.debian.org/debian bullseye/main amd64 r-bioc-iranges amd64 2.24.1-1 [2202 kB] Get:939 http://deb.debian.org/debian bullseye/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get:940 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get:941 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:942 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get:943 http://deb.debian.org/debian bullseye/main amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get:944 http://deb.debian.org/debian bullseye/main amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get:945 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1856 kB] Get:946 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get:947 http://deb.debian.org/debian bullseye/main amd64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get:948 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biobase amd64 2.50.0-1 [2229 kB] Get:949 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:950 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:951 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1798 kB] Get:952 http://deb.debian.org/debian bullseye/main amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get:953 http://deb.debian.org/debian bullseye/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get:954 http://deb.debian.org/debian bullseye/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:955 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:956 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:957 http://deb.debian.org/debian bullseye/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:958 http://deb.debian.org/debian bullseye/main amd64 r-cran-bh all 1.74.0-1 [5196 B] Get:959 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocparallel amd64 1.24.1-1 [1143 kB] Get:960 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbi all 1.1.1-1 [619 kB] Get:961 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit amd64 4.0.4+dfsg-1 [422 kB] Get:962 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:963 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get:964 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:965 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get:966 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:967 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get:968 http://deb.debian.org/debian bullseye/main amd64 r-cran-blob all 1.2.1-2 [49.1 kB] Get:969 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastmap amd64 1.1.0-1 [64.7 kB] Get:970 http://deb.debian.org/debian bullseye/main amd64 r-cran-cachem amd64 1.0.3-1 [61.4 kB] Get:971 http://deb.debian.org/debian bullseye/main amd64 r-cran-memoise all 2.0.0-1 [52.9 kB] Get:972 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:973 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get:974 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get:975 http://deb.debian.org/debian bullseye/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get:976 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsqlite amd64 2.2.3-1 [1035 kB] Get:977 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotationdbi all 1.52.0-1 [4707 kB] Get:978 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml amd64 3.99-0.5-1 [1722 kB] Get:979 http://deb.debian.org/debian bullseye/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:980 http://deb.debian.org/debian bullseye/main amd64 r-cran-curl amd64 4.3+dfsg-1+b1 [151 kB] Get:981 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:982 http://deb.debian.org/debian bullseye/main amd64 r-cran-mime amd64 0.9-1+b1 [35.5 kB] Get:983 http://deb.debian.org/debian bullseye/main amd64 r-cran-sys amd64 3.4-1 [42.9 kB] Get:984 http://deb.debian.org/debian bullseye/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB] Get:985 http://deb.debian.org/debian bullseye/main amd64 r-cran-openssl amd64 1.4.3+dfsg-2 [376 kB] Get:986 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get:987 http://deb.debian.org/debian bullseye/main amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:988 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotate all 1.68.0+dfsg-1 [2103 kB] Get:989 http://deb.debian.org/debian bullseye/main amd64 r-cran-survival amd64 3.2-7-1 [7631 kB] Get:990 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genefilter amd64 1.72.1-1 [1154 kB] Get:991 http://deb.debian.org/debian bullseye/main amd64 r-cran-locfit amd64 1.5-9.4-2+b1 [508 kB] Get:992 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get:993 http://deb.debian.org/debian bullseye/main amd64 r-bioc-geneplotter all 1.68.0-1 [1551 kB] Get:994 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:995 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get:996 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get:997 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get:998 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get:999 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:1000 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get:1001 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get:1002 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get:1003 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get:1004 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get:1005 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:1006 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get:1007 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:1008 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get:1009 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get:1010 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get:1011 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:1012 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get:1013 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get:1014 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:1015 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:1016 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get:1017 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get:1018 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get:1019 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get:1020 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get:1021 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get:1022 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get:1023 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get:1024 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get:1025 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get:1026 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:1027 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get:1028 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:1029 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get:1030 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get:1031 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get:1032 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpparmadillo amd64 0.10.2.1.0-1 [1149 kB] Get:1033 http://deb.debian.org/debian bullseye/main amd64 r-bioc-deseq2 amd64 1.30.1+dfsg-1 [1296 kB] Get:1034 http://deb.debian.org/debian bullseye/main amd64 r-bioc-tximport all 1.18.0+dfsg-1 [86.2 kB] Get:1035 http://deb.debian.org/debian bullseye/main amd64 r-cran-data.table amd64 1.13.6+dfsg-1 [1715 kB] Get:1036 http://deb.debian.org/debian bullseye/main amd64 r-cran-highr all 0.8+dfsg-2 [40.1 kB] Get:1037 http://deb.debian.org/debian bullseye/main amd64 r-cran-xfun amd64 0.20-1 [288 kB] Get:1038 http://deb.debian.org/debian bullseye/main amd64 r-cran-markdown amd64 1.1+dfsg-1+b1 [125 kB] Get:1039 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:1040 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:1041 http://deb.debian.org/debian bullseye/main amd64 r-cran-yaml amd64 2.2.1-1+b1 [104 kB] Get:1042 http://deb.debian.org/debian bullseye/main amd64 r-cran-knitr all 1.31+dfsg-1 [833 kB] Get:1043 http://deb.debian.org/debian bullseye/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:1044 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmltools amd64 0.5.1.1-1 [241 kB] Get:1045 http://deb.debian.org/debian bullseye/main amd64 r-cran-tinytex all 0.29-1 [118 kB] Get:1046 http://deb.debian.org/debian bullseye/main amd64 r-cran-later amd64 1.1.0.1+dfsg-1 [119 kB] Get:1047 http://deb.debian.org/debian bullseye/main amd64 r-cran-promises amd64 1.1.1+dfsg-1 [172 kB] Get:1048 http://deb.debian.org/debian bullseye/main amd64 r-cran-httpuv amd64 1.5.5+dfsg-1 [491 kB] Get:1049 http://deb.debian.org/debian bullseye/main amd64 r-cran-sourcetools amd64 0.1.7-3 [45.3 kB] Get:1050 http://deb.debian.org/debian bullseye/main amd64 r-cran-commonmark amd64 1.7-2 [111 kB] Get:1051 http://deb.debian.org/debian bullseye/main amd64 r-cran-shiny all 1.5.0+dfsg-2 [3599 kB] Get:1052 http://deb.debian.org/debian bullseye/main amd64 r-cran-rmarkdown all 2.6+dfsg-1 [2160 kB] Get:1053 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggrepel amd64 0.9.1-1 [375 kB] Get:1054 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmlwidgets all 1.5.3+dfsg-1 [124 kB] Get:1055 http://deb.debian.org/debian bullseye/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB] Get:1056 http://deb.debian.org/debian bullseye/main amd64 r-cran-crosstalk all 1.1.1+dfsg-2 [167 kB] Get:1057 http://deb.debian.org/debian bullseye/main amd64 r-cran-dt all 0.17+dfsg-3 [209 kB] Get:1058 http://deb.debian.org/debian bullseye/main amd64 r-cran-pheatmap all 1.0.12-2 [77.9 kB] Get:1059 http://deb.debian.org/debian bullseye/main amd64 r-cran-corrplot all 0.84-3 [103 kB] Get:1060 http://deb.debian.org/debian bullseye/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get:1061 http://deb.debian.org/debian bullseye/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:1062 http://deb.debian.org/debian bullseye/main amd64 r-cran-generics all 0.1.0-1 [73.5 kB] Get:1063 http://deb.debian.org/debian bullseye/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get:1064 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1 [192 kB] Get:1065 http://deb.debian.org/debian bullseye/main amd64 r-cran-dplyr amd64 1.0.4-1 [1143 kB] Get:1066 http://deb.debian.org/debian bullseye/main amd64 r-cran-cpp11 all 0.2.6-1 [144 kB] Get:1067 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyr amd64 1.1.2-1 [786 kB] Get:1068 http://deb.debian.org/debian bullseye/main amd64 r-cran-miniui all 0.1.1.1-3 [35.9 kB] Get:1069 http://deb.debian.org/debian bullseye/main amd64 r-cran-shinyjs all 2.0.0-1 [1028 kB] Get:1070 http://deb.debian.org/debian bullseye/main amd64 r-cran-colourpicker all 1.1.0+dfsg-1 [1727 kB] Get:1071 http://deb.debian.org/debian bullseye/main amd64 r-cran-plotly all 4.9.3+dfsg-2 [3266 kB] Get:1072 http://deb.debian.org/debian bullseye/main amd64 r-cran-gprofiler all 0.7.0-2 [42.6 kB] Get:1073 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get:1074 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1024 kB] Get:1075 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rsamtools amd64 2.6.0-1 [3659 kB] Get:1076 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2196 kB] Get:1077 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rtracklayer amd64 1.50.0-1 [7467 kB] Get:1078 http://deb.debian.org/debian bullseye/main amd64 r-cran-rjson amd64 0.2.20-2 [127 kB] Get:1079 http://deb.debian.org/debian bullseye/main amd64 pigx-rnaseq all 0.0.10+ds-2 [54.4 kB] Get:1080 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get:1081 http://deb.debian.org/debian bullseye/main amd64 preview-latex-style all 12.2-1 [201 kB] Get:1082 http://deb.debian.org/debian bullseye/main amd64 proj-bin amd64 7.2.1-1 [189 kB] Get:1083 http://deb.debian.org/debian bullseye/main amd64 publicsuffix all 20220811.1734-0+deb11u1 [127 kB] Get:1084 http://deb.debian.org/debian bullseye/main amd64 python-biopython-doc all 1.78+dfsg-4 [15.0 MB] Get:1085 http://deb.debian.org/debian bullseye/main amd64 python3-cffi-backend amd64 1.14.5-1 [85.8 kB] Get:1086 http://deb.debian.org/debian bullseye/main amd64 python3-cryptography amd64 3.3.2-1 [223 kB] Get:1087 http://deb.debian.org/debian bullseye/main amd64 python3-jwt all 1.7.1-2 [21.0 kB] Get:1088 http://deb.debian.org/debian bullseye/main amd64 python3-adal all 1.2.2-1 [32.2 kB] Get:1089 http://deb.debian.org/debian bullseye/main amd64 python3-multidict amd64 5.1.0-1 [38.7 kB] Get:1090 http://deb.debian.org/debian bullseye/main amd64 python3-yarl amd64 1.6.3-2 [48.6 kB] Get:1091 http://deb.debian.org/debian bullseye/main amd64 python3-async-timeout all 3.0.1-1.1 [6420 B] Get:1092 http://deb.debian.org/debian bullseye/main amd64 python3-aiohttp amd64 3.7.4-1 [263 kB] Get:1093 http://deb.debian.org/debian bullseye/main amd64 python3-avro all 1.10.1+dfsg-1 [31.5 kB] Get:1094 http://deb.debian.org/debian bullseye/main amd64 python3-blinker all 1.4+dfsg1-0.3 [14.1 kB] Get:1095 http://deb.debian.org/debian bullseye/main amd64 python3-oauthlib all 3.1.0-2 [91.7 kB] Get:1096 http://deb.debian.org/debian bullseye/main amd64 python3-requests-oauthlib all 1.0.0-1.1 [18.7 kB] Get:1097 http://deb.debian.org/debian bullseye/main amd64 python3-msrest all 0.6.21-1 [48.1 kB] Get:1098 http://deb.debian.org/debian bullseye/main amd64 python3-msrestazure all 0.6.2-1 [26.4 kB] Get:1099 http://deb.debian.org/debian bullseye/main amd64 python3-msal all 1.9.0-1 [52.9 kB] Get:1100 http://deb.debian.org/debian bullseye/main amd64 python3-gi amd64 3.38.0-2 [232 kB] Get:1101 http://deb.debian.org/debian bullseye/main amd64 python3-portalocker all 2.2.1-1 [18.5 kB] Get:1102 http://deb.debian.org/debian bullseye/main amd64 python3-msal-extensions all 0.3.0-1 [14.7 kB] Get:1103 http://deb.debian.org/debian bullseye/main amd64 python3-uamqp amd64 1.2.13-1 [626 kB] Get:1104 http://deb.debian.org/debian bullseye/main amd64 python3-azure all 20201208+git-6 [6464 kB] Get:1105 http://deb.debian.org/debian bullseye/main amd64 python3-azure-storage all 20201208+git-6 [228 kB] Get:1106 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get:1107 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get:1108 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get:1109 http://deb.debian.org/debian bullseye/main amd64 python3-jmespath all 0.10.0-1 [21.7 kB] Get:1110 http://deb.debian.org/debian bullseye/main amd64 python3-botocore all 1.20.0+repack-1 [3863 kB] Get:1111 http://deb.debian.org/debian bullseye/main amd64 python3-s3transfer all 0.3.4-1 [48.0 kB] Get:1112 http://deb.debian.org/debian bullseye/main amd64 python3-boto3 all 1.13.14-1 [81.5 kB] Get:1113 http://deb.debian.org/debian bullseye/main amd64 python3-soupsieve all 2.2.1-1 [34.7 kB] Get:1114 http://deb.debian.org/debian bullseye/main amd64 python3-bs4 all 4.9.3-1 [112 kB] Get:1115 http://deb.debian.org/debian bullseye/main amd64 python3-cachetools all 4.2.1-1 [12.6 kB] Get:1116 http://deb.debian.org/debian bullseye/main amd64 python3-dropbox all 10.10.0-1 [465 kB] Get:1117 http://deb.debian.org/debian bullseye/main amd64 python3-itsdangerous all 1.1.0-3 [17.0 kB] Get:1118 http://deb.debian.org/debian bullseye/main amd64 python3-werkzeug all 1.0.1+dfsg1-2+deb11u1 [195 kB] Get:1119 http://deb.debian.org/debian bullseye/main amd64 python3-flask all 1.1.2-2+deb11u1 [99.1 kB] Get:1120 http://deb.debian.org/debian bullseye/main amd64 python3-ftputil all 3.4-3 [105 kB] Get:1121 http://deb.debian.org/debian bullseye/main amd64 python3-gdal amd64 3.2.2+dfsg-2+deb11u2 [888 kB] Get:1122 http://deb.debian.org/debian bullseye/main amd64 python3-pyasn1 all 0.4.8-1 [63.8 kB] Get:1123 http://deb.debian.org/debian bullseye/main amd64 python3-pyasn1-modules all 0.2.1-1 [34.6 kB] Get:1124 http://deb.debian.org/debian bullseye/main amd64 python3-rsa all 4.0-4 [29.8 kB] Get:1125 http://deb.debian.org/debian bullseye/main amd64 python3-google-auth all 1.5.1-3 [38.9 kB] Get:1126 http://deb.debian.org/debian bullseye/main amd64 python3-webencodings all 0.5.1-2 [11.0 kB] Get:1127 http://deb.debian.org/debian bullseye/main amd64 python3-html5lib all 1.1-3 [93.0 kB] Get:1128 http://deb.debian.org/debian bullseye/main amd64 python3-prettytable all 0.7.2-5 [22.9 kB] Get:1129 http://deb.debian.org/debian bullseye/main amd64 python3-irodsclient all 0.8.1-2 [72.1 kB] Get:1130 http://deb.debian.org/debian bullseye/main amd64 python3-websocket all 0.57.0-1 [34.3 kB] Get:1131 http://deb.debian.org/debian bullseye/main amd64 python3-kubernetes all 12.0.1-1 [354 kB] Get:1132 http://deb.debian.org/debian bullseye/main amd64 python3-olefile all 0.46-3 [36.1 kB] Get:1133 http://deb.debian.org/debian bullseye/main amd64 python3-openssl all 20.0.1-1 [53.7 kB] Get:1134 http://deb.debian.org/debian bullseye/main amd64 python3-pygraphviz amd64 1.7-2 [79.9 kB] Get:1135 http://deb.debian.org/debian bullseye/main amd64 python3-pyinotify all 0.9.6-1.3 [27.2 kB] Get:1136 http://deb.debian.org/debian bullseye/main amd64 python3-renderpm amd64 3.5.59-2 [80.0 kB] Get:1137 http://deb.debian.org/debian bullseye/main amd64 python3-sparqlwrapper all 1.8.5-1 [35.2 kB] Get:1138 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get:1139 http://deb.debian.org/debian bullseye/main amd64 python3-yappi amd64 1.0-1+b5 [24.7 kB] Get:1140 http://deb.debian.org/debian bullseye/main amd64 xauth amd64 1:1.1-1 [40.5 kB] Get:1141 http://deb.debian.org/debian bullseye/main amd64 r-base-dev all 4.0.4-1 [4484 B] Get:1142 http://deb.debian.org/debian bullseye/main amd64 r-bioc-beachmat amd64 2.6.4+ds-1 [96.3 kB] Get:1143 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpphnsw amd64 0.3.0.9001+ds-1+b1 [145 kB] Get:1144 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocneighbors amd64 1.8.2+ds-1 [537 kB] Get:1145 http://deb.debian.org/debian bullseye/main amd64 r-cran-irlba amd64 2.3.3-2 [296 kB] Get:1146 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsvd all 1.0.3-3 [6129 kB] Get:1147 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocsingular amd64 1.6.0+ds-1 [453 kB] Get:1148 http://deb.debian.org/debian bullseye/main amd64 r-cran-bookdown all 0.21+dfsg-1 [1078 kB] Get:1149 http://deb.debian.org/debian bullseye/main amd64 r-cran-biocmanager all 1.30.10+dfsg-2 [94.8 kB] Get:1150 http://deb.debian.org/debian bullseye/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:1151 http://deb.debian.org/debian bullseye/main amd64 texlive-binaries amd64 2020.20200327.54578-7+deb11u1 [10.1 MB] Get:1152 http://deb.debian.org/debian bullseye/main amd64 texlive-base all 2020.20210202-3 [20.8 MB] Get:1153 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-base all 2020.20210202-3 [1120 kB] Get:1154 http://deb.debian.org/debian bullseye/main amd64 texlive-bibtex-extra all 2020.20210202-3 [67.2 MB] Get:1155 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocstyle all 2.18.1+dfsg-3 [432 kB] Get:1156 http://deb.debian.org/debian bullseye/main amd64 r-bioc-graph amd64 1.68.0-1 [1630 kB] Get:1157 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rbgl amd64 1.66.0+dfsg-1 [782 kB] Get:1158 http://deb.debian.org/debian bullseye/main amd64 r-cran-runit all 0.4.32-3 [294 kB] Get:1159 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocviews all 1.58.1-2 [655 kB] Get:1160 http://deb.debian.org/debian bullseye/main amd64 r-cran-igraph amd64 1.2.6-1 [3521 kB] Get:1161 http://deb.debian.org/debian bullseye/main amd64 r-bioc-bluster amd64 1.0.0+dfsg-2 [289 kB] Get:1162 http://deb.debian.org/debian bullseye/main amd64 r-bioc-sparsematrixstats amd64 1.2.1+dfsg-4 [824 kB] Get:1163 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhdf5lib amd64 1.12.1+dfsg-3+b1 [27.9 kB] Get:1164 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhdf5filters amd64 1.2.0+dfsg2-1 [22.1 kB] Get:1165 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhdf5 amd64 2.34.0+dfsg-1 [548 kB] Get:1166 http://deb.debian.org/debian bullseye/main amd64 r-bioc-hdf5array amd64 1.18.1-3 [8622 kB] Get:1167 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedmatrixstats all 1.12.3+ds-1 [414 kB] Get:1168 http://deb.debian.org/debian bullseye/main amd64 r-bioc-limma amd64 3.46.0+dfsg-1 [1767 kB] Get:1169 http://deb.debian.org/debian bullseye/main amd64 r-bioc-edger amd64 3.32.1+dfsg-1 [1077 kB] Get:1170 http://deb.debian.org/debian bullseye/main amd64 r-bioc-glmgampoi amd64 1.2.0+dfsg-6 [407 kB] Get:1171 http://deb.debian.org/debian bullseye/main amd64 r-bioc-go.db all 3.12.1-1 [12.9 MB] Get:1172 http://deb.debian.org/debian bullseye/main amd64 r-bioc-hsmmsinglecell all 1.10.0-1 [16.8 MB] Get:1173 http://deb.debian.org/debian bullseye/main amd64 r-cran-vgam amd64 1.1-5-1 [6977 kB] Get:1174 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcppeigen amd64 0.3.3.9.1-1 [1351 kB] Get:1175 http://deb.debian.org/debian bullseye/main amd64 r-cran-ddrtree amd64 0.1.5-2 [154 kB] Get:1176 http://deb.debian.org/debian bullseye/main amd64 r-cran-cluster amd64 2.1.1-1 [553 kB] Get:1177 http://deb.debian.org/debian bullseye/main amd64 r-cran-combinat all 0.0-8-7 [42.8 kB] Get:1178 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastica amd64 1.2-2-2+b1 [41.9 kB] Get:1179 http://deb.debian.org/debian bullseye/main amd64 r-cran-fnn amd64 1.1.3-2 [120 kB] Get:1180 http://deb.debian.org/debian bullseye/main amd64 r-cran-rtsne amd64 0.15-2+b1 [97.9 kB] Get:1181 http://deb.debian.org/debian bullseye/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:1182 http://deb.debian.org/debian bullseye/main amd64 r-cran-densityclust amd64 0.3-2 [93.4 kB] Get:1183 http://deb.debian.org/debian bullseye/main amd64 r-cran-slam amd64 0.1-48-1 [183 kB] Get:1184 http://deb.debian.org/debian bullseye/main amd64 r-cran-sparsesvd amd64 0.2-2 [41.5 kB] Get:1185 http://deb.debian.org/debian bullseye/main amd64 r-cran-docopt all 0.7.1-2 [249 kB] Get:1186 http://deb.debian.org/debian bullseye/main amd64 r-cran-qlcmatrix all 0.9.7-2 [3297 kB] Get:1187 http://deb.debian.org/debian bullseye/main amd64 r-cran-proxy amd64 0.4-24-2 [223 kB] Get:1188 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridis all 0.5.1-3 [1846 kB] Get:1189 http://deb.debian.org/debian bullseye/main amd64 r-cran-rann amd64 2.6.1-1+b2 [41.9 kB] Get:1190 http://deb.debian.org/debian bullseye/main amd64 r-bioc-monocle amd64 2.18.0-1 [1470 kB] Get:1191 http://deb.debian.org/debian bullseye/main amd64 r-bioc-org.hs.eg.db all 3.12.0-1 [35.8 MB] Get:1192 http://deb.debian.org/debian bullseye/main amd64 r-bioc-singlecellexperiment all 1.12.0+ds-1 [758 kB] Get:1193 http://deb.debian.org/debian bullseye/main amd64 r-bioc-scuttle amd64 1.0.4+dfsg-5 [367 kB] Get:1194 http://deb.debian.org/debian bullseye/main amd64 r-cran-statmod amd64 1.4.35-1 [255 kB] Get:1195 http://deb.debian.org/debian bullseye/main amd64 r-cran-sitmo amd64 2.0.1-2+b1 [123 kB] Get:1196 http://deb.debian.org/debian bullseye/main amd64 r-cran-dqrng amd64 0.2.1+dfsg-4+b1 [116 kB] Get:1197 http://deb.debian.org/debian bullseye/main amd64 r-bioc-scran amd64 1.18.5+dfsg-1 [1142 kB] Get:1198 http://deb.debian.org/debian bullseye/main amd64 r-cran-hwriter all 1.3.2-4 [162 kB] Get:1199 http://deb.debian.org/debian bullseye/main amd64 r-cran-png amd64 0.1-7-4 [40.7 kB] Get:1200 http://deb.debian.org/debian bullseye/main amd64 r-cran-jpeg amd64 0.1-8.1-1+b1 [30.3 kB] Get:1201 http://deb.debian.org/debian bullseye/main amd64 r-cran-latticeextra all 0.6-29-3 [2192 kB] Get:1202 http://deb.debian.org/debian bullseye/main amd64 r-bioc-shortread amd64 1.48.0-2 [5134 kB] Get:1203 http://deb.debian.org/debian bullseye/main amd64 r-cran-abind all 1.4-5-2 [64.6 kB] Get:1204 http://deb.debian.org/debian bullseye/main amd64 r-cran-backports amd64 1.2.1-1 [89.2 kB] Get:1205 http://deb.debian.org/debian bullseye/main amd64 r-cran-base64url amd64 1.4-2+b1 [26.4 kB] Get:1206 http://deb.debian.org/debian bullseye/main amd64 r-cran-checkmate amd64 2.0.0-1+b1 [601 kB] Get:1207 http://deb.debian.org/debian bullseye/main amd64 r-cran-bbmisc amd64 1.11-4 [314 kB] Get:1208 http://deb.debian.org/debian bullseye/main amd64 r-cran-brew all 1.0-6-4 [71.0 kB] Get:1209 http://deb.debian.org/debian bullseye/main amd64 r-cran-sendmailr all 1.2-1-5 [39.7 kB] Get:1210 http://deb.debian.org/debian bullseye/main amd64 r-cran-batchjobs all 1.8-2 [498 kB] Get:1211 http://deb.debian.org/debian bullseye/main amd64 r-cran-fs amd64 1.5.0+dfsg-1 [224 kB] Get:1212 http://deb.debian.org/debian bullseye/main amd64 r-cran-hms all 1.0.0-1 [102 kB] Get:1213 http://deb.debian.org/debian bullseye/main amd64 r-cran-progress all 1.2.2-2 [88.9 kB] Get:1214 http://deb.debian.org/debian bullseye/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get:1215 http://deb.debian.org/debian bullseye/main amd64 r-cran-batchtools amd64 0.9.15+dfsg-1 [710 kB] Get:1216 http://deb.debian.org/debian bullseye/main amd64 r-cran-boot all 1.3-27-1 [619 kB] Get:1217 http://deb.debian.org/debian bullseye/main amd64 r-cran-broom all 0.7.4+dfsg-1 [1699 kB] Get:1218 http://deb.debian.org/debian bullseye/main amd64 r-cran-codetools all 0.2-18-1 [91.8 kB] Get:1219 http://deb.debian.org/debian bullseye/main amd64 r-cran-iterators all 1.0.13-1 [329 kB] Get:1220 http://deb.debian.org/debian bullseye/main amd64 r-cran-foreach all 1.5.1-1 [120 kB] Get:1221 http://deb.debian.org/debian bullseye/main amd64 r-cran-modelmetrics amd64 1.2.2.2-1+b1 [125 kB] Get:1222 http://deb.debian.org/debian bullseye/main amd64 r-cran-gower amd64 0.2.2-1 [157 kB] Get:1223 http://deb.debian.org/debian bullseye/main amd64 r-cran-rpart amd64 4.1-15-2+b1 [702 kB] Get:1224 http://deb.debian.org/debian bullseye/main amd64 r-cran-nnet amd64 7.3-15-1 [111 kB] Get:1225 http://deb.debian.org/debian bullseye/main amd64 r-cran-class amd64 7.3-18-1 [87.5 kB] Get:1226 http://deb.debian.org/debian bullseye/main amd64 r-cran-kernsmooth amd64 2.23-18-1 [91.1 kB] Get:1227 http://deb.debian.org/debian bullseye/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get:1228 http://deb.debian.org/debian bullseye/main amd64 r-cran-squarem all 2021.1-1 [179 kB] Get:1229 http://deb.debian.org/debian bullseye/main amd64 r-cran-lava all 1.6.8.1-1 [2469 kB] Get:1230 http://deb.debian.org/debian bullseye/main amd64 r-cran-prodlim amd64 2019.11.13-1+b1 [395 kB] Get:1231 http://deb.debian.org/debian bullseye/main amd64 r-cran-ipred amd64 0.9-9-2 [385 kB] Get:1232 http://deb.debian.org/debian bullseye/main amd64 r-cran-lubridate amd64 1.7.9.2+dfsg-1 [1037 kB] Get:1233 http://deb.debian.org/debian bullseye/main amd64 r-cran-timedate amd64 3043.102-1+b2 [1450 kB] Get:1234 http://deb.debian.org/debian bullseye/main amd64 r-cran-recipes all 0.1.15+dfsg-1 [1274 kB] Get:1235 http://deb.debian.org/debian bullseye/main amd64 r-cran-proc amd64 1.17.0.1-1 [975 kB] Get:1236 http://deb.debian.org/debian bullseye/main amd64 r-cran-caret amd64 6.0-86+dfsg-1+b1 [5703 kB] Get:1237 http://deb.debian.org/debian bullseye/main amd64 r-cran-catools amd64 1.18.1-1 [204 kB] Get:1238 http://deb.debian.org/debian bullseye/main amd64 r-cran-cba amd64 0.2-21-2 [252 kB] Get:1239 http://deb.debian.org/debian bullseye/main amd64 r-cran-e1071 amd64 1.7-4-1 [797 kB] Get:1240 http://deb.debian.org/debian bullseye/main amd64 r-cran-classint amd64 0.4-3-1+b1 [437 kB] Get:1241 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettycode all 1.1.0-2 [247 kB] Get:1242 http://deb.debian.org/debian bullseye/main amd64 r-cran-selectr all 0.4-2-2 [412 kB] Get:1243 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml2 amd64 1.3.2-1+b1 [270 kB] Get:1244 http://deb.debian.org/debian bullseye/main amd64 r-cran-cliapp all 0.1.1-1 [241 kB] Get:1245 http://deb.debian.org/debian bullseye/main amd64 r-cran-clipr all 0.7.1-1 [50.7 kB] Get:1246 http://deb.debian.org/debian bullseye/main amd64 r-cran-conquer amd64 1.0.2-1 [105 kB] Get:1247 http://deb.debian.org/debian bullseye/main amd64 r-cran-rex all 1.2.0-2 [122 kB] Get:1248 http://deb.debian.org/debian bullseye/main amd64 r-cran-covr amd64 3.5.1+dfsg-2 [265 kB] Get:1249 http://deb.debian.org/debian bullseye/main amd64 r-cran-credentials all 1.3.0-2 [168 kB] Get:1250 http://deb.debian.org/debian bullseye/main amd64 r-cran-kernlab amd64 0.9-29-1+b1 [2066 kB] Get:1251 http://deb.debian.org/debian bullseye/main amd64 r-cran-cvst all 0.2-2-3 [86.7 kB] Get:1252 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbitest all 1.7.0-2 [1042 kB] Get:1253 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbplyr all 2.1.0-1 [802 kB] Get:1254 http://deb.debian.org/debian bullseye/main amd64 r-cran-deoptimr amd64 1.0-8-1+b3 [41.3 kB] Get:1255 http://deb.debian.org/debian bullseye/main amd64 r-cran-robustbase amd64 0.93-7-1 [2972 kB] Get:1256 http://deb.debian.org/debian bullseye/main amd64 r-cran-sfsmisc all 1.1-8-1 [624 kB] Get:1257 http://deb.debian.org/debian bullseye/main amd64 r-cran-magic all 1.5-9-2 [368 kB] Get:1258 http://deb.debian.org/debian bullseye/main amd64 r-cran-lpsolve amd64 5.6.15-1+b1 [320 kB] Get:1259 http://deb.debian.org/debian bullseye/main amd64 r-cran-linprog amd64 0.9-2-2 [74.8 kB] Get:1260 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcppprogress all 0.4.2-2 [21.8 kB] Get:1261 http://deb.debian.org/debian bullseye/main amd64 r-cran-geometry amd64 0.4.5-1+b1 [729 kB] Get:1262 http://deb.debian.org/debian bullseye/main amd64 r-cran-ddalpha amd64 1.3.11-1+b1 [1188 kB] Get:1263 http://deb.debian.org/debian bullseye/main amd64 r-cran-decor amd64 1.0.0-2 [27.7 kB] Get:1264 http://deb.debian.org/debian bullseye/main amd64 r-cran-deldir amd64 0.2-9-1 [273 kB] Get:1265 http://deb.debian.org/debian bullseye/main amd64 r-cran-zip amd64 2.1.1-1 [119 kB] Get:1266 http://deb.debian.org/debian bullseye/main amd64 r-cran-gert amd64 1.1.0-1 [181 kB] Get:1267 http://deb.debian.org/debian bullseye/main amd64 r-cran-gitcreds all 0.1.1-2 [89.4 kB] Get:1268 http://deb.debian.org/debian bullseye/main amd64 r-cran-ini all 0.3.1-2 [15.6 kB] Get:1269 http://deb.debian.org/debian bullseye/main amd64 r-cran-gh all 1.2.0-1 [132 kB] Get:1270 http://deb.debian.org/debian bullseye/main amd64 r-cran-whisker all 0.4-2 [62.0 kB] Get:1271 http://deb.debian.org/debian bullseye/main amd64 r-cran-usethis all 2.0.0-1 [711 kB] Get:1272 http://deb.debian.org/debian bullseye/main amd64 r-cran-sessioninfo all 1.1.1-4 [79.8 kB] Get:1273 http://deb.debian.org/debian bullseye/main amd64 r-cran-xopen all 1.0.0-2 [24.0 kB] Get:1274 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcmdcheck all 1.3.3-2 [155 kB] Get:1275 http://deb.debian.org/debian bullseye/main amd64 r-cran-remotes all 2.2.0-2 [404 kB] Get:1276 http://deb.debian.org/debian bullseye/main amd64 r-cran-roxygen2 amd64 7.1.1-1 [641 kB] Get:1277 http://deb.debian.org/debian bullseye/main amd64 r-cran-rversions all 2.0.2-1 [67.4 kB] Get:1278 http://deb.debian.org/debian bullseye/main amd64 r-cran-devtools all 2.3.2-1 [598 kB] Get:1279 http://deb.debian.org/debian bullseye/main amd64 r-cran-drr all 0.0.4-2 [145 kB] Get:1280 http://deb.debian.org/debian bullseye/main amd64 r-cran-dimred amd64 0.2.3-2 [1265 kB] Get:1281 http://deb.debian.org/debian bullseye/main amd64 r-cran-multicore amd64 0.2-1+b3 [23.2 kB] Get:1282 http://deb.debian.org/debian bullseye/main amd64 r-cran-domc all 1.3.7-1 [162 kB] Get:1283 http://deb.debian.org/debian bullseye/main amd64 r-cran-doparallel all 1.0.16-1 [61.3 kB] Get:1284 http://deb.debian.org/debian bullseye/main amd64 r-cran-zoo amd64 1.8-8-1+b1 [1051 kB] Get:1285 http://deb.debian.org/debian bullseye/main amd64 r-cran-xts amd64 0.12.1-1 [861 kB] Get:1286 http://deb.debian.org/debian bullseye/main amd64 r-cran-dygraphs all 1.1.1.6+dfsg-2 [293 kB] Get:1287 http://deb.debian.org/debian bullseye/main amd64 r-cran-dynamictreecut all 1.63-1-3 [93.5 kB] Get:1288 http://deb.debian.org/debian bullseye/main amd64 r-cran-formula all 1.2-4-1 [175 kB] Get:1289 http://deb.debian.org/debian bullseye/main amd64 r-cran-plotrix all 3.8-1-1 [1122 kB] Get:1290 http://deb.debian.org/debian bullseye/main amd64 r-cran-teachingdemos all 2.12-2 [1227 kB] Get:1291 http://deb.debian.org/debian bullseye/main amd64 r-cran-plotmo all 3.6.0-1 [1503 kB] Get:1292 http://deb.debian.org/debian bullseye/main amd64 r-cran-earth amd64 5.3.0-1 [1895 kB] Get:1293 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastmatch amd64 1.1-0-3 [33.2 kB] Get:1294 http://deb.debian.org/debian bullseye/main amd64 r-cran-filehash amd64 2.4-2-3 [341 kB] Get:1295 http://deb.debian.org/debian bullseye/main amd64 r-cran-fontbitstreamvera all 0.1.1+dfsg-4 [326 kB] Get:1296 http://deb.debian.org/debian bullseye/main amd64 r-cran-fontliberation all 0.1.0+dfsg-4 [2262 kB] Get:1297 http://deb.debian.org/debian bullseye/main amd64 r-cran-fontquiver all 0.2.1-3 [2130 kB] Get:1298 http://deb.debian.org/debian bullseye/main amd64 r-cran-foreign amd64 0.8.81-1 [253 kB] Get:1299 http://deb.debian.org/debian bullseye/main amd64 r-cran-freetypeharfbuzz amd64 0.2.6+dfsg-1 [19.0 kB] Get:1300 http://deb.debian.org/debian bullseye/main amd64 r-cran-fts amd64 0.9.9.2-2 [180 kB] Get:1301 http://deb.debian.org/debian bullseye/main amd64 r-cran-globals all 0.14.0-1 [105 kB] Get:1302 http://deb.debian.org/debian bullseye/main amd64 r-cran-listenv all 0.8.0+dfsg-1 [105 kB] Get:1303 http://deb.debian.org/debian bullseye/main amd64 r-cran-parallelly all 1.23.0-1 [222 kB] Get:1304 http://deb.debian.org/debian bullseye/main amd64 r-cran-future all 1.21.0+dfsg-1 [576 kB] Get:1305 http://deb.debian.org/debian bullseye/main amd64 r-cran-furrr all 0.2.2-1 [1019 kB] Get:1306 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtools amd64 3.8.2-1+b1 [329 kB] Get:1307 http://deb.debian.org/debian bullseye/main amd64 r-cran-gdata all 2.18.0-3 [1031 kB] Get:1308 http://deb.debian.org/debian bullseye/main amd64 r-cran-systemfonts amd64 1.0.0-1 [216 kB] Get:1309 http://deb.debian.org/debian bullseye/main amd64 r-cran-gdtools amd64 0.2.3-1 [91.5 kB] Get:1310 http://deb.debian.org/debian bullseye/main amd64 r-cran-sp amd64 1:1.4-5-1 [1793 kB] Get:1311 http://deb.debian.org/debian bullseye/main amd64 r-cran-geosphere amd64 1.5-10-2 [956 kB] Get:1312 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggthemes all 4.2.4-1 [432 kB] Get:1313 http://deb.debian.org/debian bullseye/main amd64 r-cran-goftest amd64 1.2-2-1+b1 [58.3 kB] Get:1314 http://deb.debian.org/debian bullseye/main amd64 r-cran-gplots all 3.1.1-1 [607 kB] Get:1315 http://deb.debian.org/debian bullseye/main amd64 r-cran-gsl amd64 2.1-6-2 [468 kB] Get:1316 http://deb.debian.org/debian bullseye/main amd64 r-cran-hexbin amd64 1.28.2-1 [1442 kB] Get:1317 http://deb.debian.org/debian bullseye/main amd64 r-cran-mclust amd64 5.4.7-1 [4107 kB] Get:1318 http://deb.debian.org/debian bullseye/main amd64 r-cran-multicool amd64 0.1-11-2+b1 [96.7 kB] Get:1319 http://deb.debian.org/debian bullseye/main amd64 r-cran-mvtnorm amd64 1.1-1-1 [219 kB] Get:1320 http://deb.debian.org/debian bullseye/main amd64 r-cran-ks amd64 1.11.7-1+b1 [1646 kB] Get:1321 http://deb.debian.org/debian bullseye/main amd64 r-cran-minqa amd64 1.2.4-1+b5 [112 kB] Get:1322 http://deb.debian.org/debian bullseye/main amd64 r-cran-nloptr amd64 1.2.2.2-1 [287 kB] Get:1323 http://deb.debian.org/debian bullseye/main amd64 r-cran-lme4 amd64 1.1-26-1 [4410 kB] Get:1324 http://deb.debian.org/debian bullseye/main amd64 r-cran-logcondens all 2.1.5-3 [761 kB] Get:1325 http://deb.debian.org/debian bullseye/main amd64 r-cran-units amd64 0.6-7-1 [746 kB] Get:1326 http://deb.debian.org/debian bullseye/main amd64 r-cran-sf amd64 0.9-7+dfsg-5 [2709 kB] Get:1327 http://deb.debian.org/debian bullseye/main amd64 r-cran-lwgeom amd64 0.2-5-2 [382 kB] Get:1328 http://deb.debian.org/debian bullseye/main amd64 r-cran-maps amd64 3.3.0-3 [2242 kB] Get:1329 http://deb.debian.org/debian bullseye/main amd64 r-cran-mapproj amd64 1.2.7-1+b1 [53.6 kB] Get:1330 http://deb.debian.org/debian bullseye/main amd64 r-cran-maptools amd64 1:1.0-2+dfsg-1 [1588 kB] Get:1331 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixmodels all 0.4-1-3 [380 kB] Get:1332 http://deb.debian.org/debian bullseye/main amd64 r-cran-mda amd64 0.5-2-1 [724 kB] Get:1333 http://deb.debian.org/debian bullseye/main amd64 r-cran-timereg amd64 1.9.8-1 [1057 kB] Get:1334 http://deb.debian.org/debian bullseye/main amd64 r-cran-mets amd64 1.2.8.1+dfsg-1 [3099 kB] Get:1335 http://deb.debian.org/debian bullseye/main amd64 r-cran-mlbench amd64 2.1-3-1 [1049 kB] Get:1336 http://deb.debian.org/debian bullseye/main amd64 r-cran-rocr all 1.0-11-2 [446 kB] Get:1337 http://deb.debian.org/debian bullseye/main amd64 r-cran-mlmetrics all 1.1.1-3 [72.5 kB] Get:1338 http://deb.debian.org/debian bullseye/main amd64 r-cran-mockery all 0.4.2+dfsg-2 [40.0 kB] Get:1339 http://deb.debian.org/debian bullseye/main amd64 r-cran-mockr all 0.1-3 [24.2 kB] Get:1340 http://deb.debian.org/debian bullseye/main amd64 r-cran-modeldata all 0.1.0-1 [4986 kB] Get:1341 http://deb.debian.org/debian bullseye/main amd64 r-cran-pls all 2.7-3-1 [4846 kB] Get:1342 http://deb.debian.org/debian bullseye/main amd64 r-cran-polyclip amd64 1.10-0-2 [109 kB] Get:1343 http://deb.debian.org/debian bullseye/main amd64 r-cran-quadprog amd64 1.5-8-1+b1 [33.6 kB] Get:1344 http://deb.debian.org/debian bullseye/main amd64 r-cran-ttr amd64 0.24.2-1 [504 kB] Get:1345 http://deb.debian.org/debian bullseye/main amd64 r-cran-quantmod all 0.4.18-1 [1007 kB] Get:1346 http://deb.debian.org/debian bullseye/main amd64 r-cran-sparsem amd64 1.81-1 [905 kB] Get:1347 http://deb.debian.org/debian bullseye/main amd64 r-cran-quantreg amd64 5.85-1 [1518 kB] Get:1348 http://deb.debian.org/debian bullseye/main amd64 r-cran-r.methodss3 all 1.8.1-1 [83.1 kB] Get:1349 http://deb.debian.org/debian bullseye/main amd64 r-cran-r.oo all 1.24.0-1 [955 kB] Get:1350 http://deb.debian.org/debian bullseye/main amd64 r-cran-randomfieldsutils amd64 0.5.3-2 [200 kB] Get:1351 http://deb.debian.org/debian bullseye/main amd64 r-cran-randomfields amd64 3.3.8-1+b1 [3229 kB] Get:1352 http://deb.debian.org/debian bullseye/main amd64 r-cran-ranger amd64 0.12.1-3+b1 [379 kB] Get:1353 http://deb.debian.org/debian bullseye/main amd64 r-cran-raster amd64 3.4-5-1 [2604 kB] Get:1354 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpproll amd64 0.3.0-2 [86.5 kB] Get:1355 http://deb.debian.org/debian bullseye/main amd64 r-cran-rgdal amd64 1.5-21+dfsg-1 [3065 kB] Get:1356 http://deb.debian.org/debian bullseye/main amd64 r-cran-rmpi amd64 0.6-9-1+b2 [267 kB] Get:1357 http://deb.debian.org/debian bullseye/main amd64 r-cran-rmysql amd64 0.10.21-1 [276 kB] Get:1358 http://deb.debian.org/debian bullseye/main amd64 r-cran-rpostgresql amd64 0.6-2+dfsg-3 [371 kB] Get:1359 http://deb.debian.org/debian bullseye/main amd64 r-cran-warp amd64 0.2.0-1 [70.0 kB] Get:1360 http://deb.debian.org/debian bullseye/main amd64 r-cran-slider amd64 0.1.5-2 [255 kB] Get:1361 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsample all 0.0.8-1 [385 kB] Get:1362 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsclient amd64 0.7-3-2+b4 [65.9 kB] Get:1363 http://deb.debian.org/debian bullseye/main amd64 r-cran-rspectra amd64 0.16-0-1+b1 [398 kB] Get:1364 http://deb.debian.org/debian bullseye/main amd64 r-cran-setrng all 2013.9-1-3 [85.4 kB] Get:1365 http://deb.debian.org/debian bullseye/main amd64 r-cran-sodium amd64 1.1-1+b2 [258 kB] Get:1366 http://deb.debian.org/debian bullseye/main amd64 r-cran-spatial amd64 7.3-13-1 [128 kB] Get:1367 http://deb.debian.org/debian bullseye/main amd64 r-cran-spatstat.utils amd64 2.0-0-1 [321 kB] Get:1368 http://deb.debian.org/debian bullseye/main amd64 r-cran-spatstat.data all 1.7-0-1 [3996 kB] Get:1369 http://deb.debian.org/debian bullseye/main amd64 r-cran-tensor all 1.5-4 [15.6 kB] Get:1370 http://deb.debian.org/debian bullseye/main amd64 r-cran-spatstat amd64 1.64-1-1 [16.2 MB] Get:1371 http://deb.debian.org/debian bullseye/main amd64 r-cran-testit all 0.12-1 [35.3 kB] Get:1372 http://deb.debian.org/debian bullseye/main amd64 r-cran-tikzdevice amd64 0.12.3.1-1 [1068 kB] Get:1373 http://deb.debian.org/debian bullseye/main amd64 r-cran-timeseries all 3062.100-2 [1806 kB] Get:1374 http://deb.debian.org/debian bullseye/main amd64 r-cran-tseries amd64 0.10-48-1 [376 kB] Get:1375 http://deb.debian.org/debian bullseye/main amd64 r-cran-vdiffr amd64 0.3.3+dfsg-1 [266 kB] Get:1376 http://deb.debian.org/debian bullseye/main amd64 r-cran-webutils amd64 1.1-1+b1 [48.1 kB] Get:1377 http://deb.debian.org/debian bullseye/main amd64 r-doc-html all 4.0.4-1 [573 kB] Get:1378 http://deb.debian.org/debian bullseye/main amd64 r-recommended all 4.0.4-1 [2576 B] Get:1379 http://deb.debian.org/debian bullseye/main amd64 tcl8.6 amd64 8.6.11+dfsg-1 [124 kB] Get:1380 http://deb.debian.org/debian bullseye/main amd64 tcl amd64 8.6.11+1 [5788 B] Get:1381 http://deb.debian.org/debian bullseye/main amd64 teckit amd64 2.5.10+ds1-3 [701 kB] Get:1382 http://deb.debian.org/debian bullseye/main amd64 termit amd64 3.1-1 [52.6 kB] Get:1383 http://deb.debian.org/debian bullseye/main amd64 tex-gyre all 20180621-3.1 [6210 kB] Get:1384 http://deb.debian.org/debian bullseye/main amd64 texlive-fonts-recommended all 2020.20210202-3 [5002 kB] Get:1385 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get:1386 http://deb.debian.org/debian bullseye/main amd64 texlive-pictures all 2020.20210202-3 [6743 kB] Get:1387 http://deb.debian.org/debian bullseye/main amd64 texlive-latex-extra all 2020.20210202-3 [13.7 MB] Get:1388 http://deb.debian.org/debian bullseye/main amd64 texlive-plain-generic all 2020.20210202-3 [27.0 MB] Get:1389 http://deb.debian.org/debian bullseye/main amd64 tipa all 2:1.3-20.1 [2978 kB] Get:1390 http://deb.debian.org/debian bullseye/main amd64 texlive-xetex all 2020.20210202-3 [12.5 MB] Get:1391 http://deb.debian.org/debian bullseye/main amd64 tk8.6 amd64 8.6.11-2 [72.3 kB] Get:1392 http://deb.debian.org/debian bullseye/main amd64 tk amd64 8.6.11+1 [5828 B] Get:1393 http://deb.debian.org/debian bullseye/main amd64 x11-xserver-utils amd64 7.7+8 [168 kB] Get:1394 http://deb.debian.org/debian bullseye/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1233 MB in 13s (92.9 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.13.6-10_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.6-10) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../1-libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Selecting previously unselected package libargon2-1:amd64. Preparing to unpack .../2-libargon2-1_0~20171227-0.2_amd64.deb ... 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Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up dmsetup (2:1.02.175-2.1) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7531 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_247.3-7+deb11u4_amd64.deb ... Unpacking systemd-sysv (247.3-7+deb11u4) ... 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Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up node-is-buffer (2.0.5-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (10.2.1-6) ... Setting up libargs4j-java (2.33-1.1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up liblsan0:amd64 (10.2.1-6) ... Setting up cpp-10 (10.2.1-6) ... Setting up libblas-dev:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libhttp-parser2.9:amd64 (2.9.4-4+deb11u1) ... Setting up libsynctex2:amd64 (2020.20200327.54578-7+deb11u1) ... Setting up node-is-plain-obj (3.0.0-1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libxkbcommon0:amd64 (1.0.3-2) ... Setting up libkmldom1:amd64 (1.3.0-9) ... Setting up libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Setting up libctf0:amd64 (2.35.2-2) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libdom4j-java (2.1.3-1) ... Setting up libgs9-common (9.53.3~dfsg-7+deb11u6) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up teckit (2.5.10+ds1-3) ... Setting up libwagon-provider-api-java (3.3.4-1) ... Setting up glib-networking-services (2.66.0-2) ... Setting up libgts-bin (0.7.6+darcs121130-4+b1) ... Setting up manpages-dev (5.10-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up tcl8.6 (8.6.11+dfsg-1) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libudunits2-0 (2.2.28-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libkmlengine1:amd64 (1.3.0-9) ... Setting up libjxr-tools (1.1-6+b1) ... Setting up libwoff1:amd64 (1.0.2-1+b1) ... Setting up libpng-tools (1.6.37-3) ... Setting up alsa-ucm-conf (1.2.4-2) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libcommons-parent-java (43-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libarpack2:amd64 (3.8.0-1) ... Setting up libxcb-shape0:amd64 (1.14-3) ... Setting up libdjvulibre21:amd64 (3.5.28-2) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libx265-192:amd64 (3.4-2) ... Setting up libsuperlu5:amd64 (5.2.2+dfsg1-2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libbigwig0:amd64 (0.4.4+dfsg-2) ... Setting up libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Setting up libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Setting up libjs-jquery-datatables (1.10.21+dfsg-2+deb11u1) ... Setting up libjson-glib-1.0-0:amd64 (1.6.2-1) ... Setting up libdap27:amd64 (3.20.7-6) ... Setting up libcfitsio9:amd64 (3.490-3) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libcommons-jexl2-java (2.1.1-5) ... Setting up coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up dbus-user-session (1.12.28-0+deb11u1) ... Setting up libmaven-resolver-java (1.4.2-3) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libptexenc1:amd64 (2020.20200327.54578-7+deb11u1) ... Setting up pandoc (2.9.2.1-1+deb11u1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libjs-jquery-metadata (12-3) ... Setting up shared-mime-info (2.0-1) ... Setting up liblapack-dev:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libgeos-c1v5:amd64 (3.9.0-1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libodbc1:amd64 (2.3.6-0.1+b1) ... Setting up ucf (3.0043) ... Setting up gir1.2-glib-2.0:amd64 (1.66.1-1+b1) ... Setting up netpbm (2:10.0-15.4) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up libcommons-lang3-java (3.11-1) ... Setting up nodejs-doc (12.22.12~dfsg-1~deb11u4) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up librngom-java (2.3.0.1-10) ... Setting up libgvpr2:amd64 (2.42.2-5) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up librttopo1:amd64 (1.1.0-2) ... Setting up libjansi-native-java (1.8-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Setting up libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ... Setting up libxcb-randr0:amd64 (1.14-3) ... Setting up cpp (4:10.2.1-1) ... Setting up xml-core (0.18+nmu1) ... Setting up tcl (8.6.11+1) ... Setting up libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Setting up libdapclient6v5:amd64 (3.20.7-6) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up gpgconf (2.2.27-2+deb11u2) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libc6-dev:amd64 (2.31-13+deb11u8) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libgfortran-10-dev:amd64 (10.2.1-6) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Setting up libsis-jhdf5-jni (19.04.0+dfsg-4) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up curl (7.74.0-1.3+deb11u11) ... Setting up libxkbfile1:amd64 (1:1.1.0-1) ... Setting up libxsom-java (2.3.0.1-10) ... Setting up libstaden-read14:amd64 (1.14.13-4) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libproj19:amd64 (7.2.1-1) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up gpg (2.2.27-2+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up gnupg-utils (2.2.27-2+deb11u2) ... Setting up binutils-x86-64-linux-gnu (2.35.2-2) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libbz2-dev:amd64 (1.0.8-4) ... Setting up libspatialite7:amd64 (5.0.1-2) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.24-4+deb11u3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Setting up libibverbs1:amd64 (33.2-1) ... Setting up pandoc-citeproc (0.17.0.1-1+b2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libncurses-dev:amd64 (6.2+20201114-2+deb11u2) ... Setting up libarmadillo10 (1:10.1.2+dfsg-6+b1) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up gpg-agent (2.2.27-2+deb11u2) ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket → /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket → /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket → /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket → /usr/lib/systemd/user/gpg-agent.socket. Setting up libgdk-pixbuf-xlib-2.0-0:amd64 (2.40.2-2) ... Setting up libxerces-c3.2:amd64 (3.2.3+debian-3+deb11u1) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up libpcre2-dev:amd64 (10.36-2+deb11u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.20-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up libwmf0.2-7:amd64 (0.2.8.4-17) ... Setting up libgit2-1.1:amd64 (1.1.0+dfsg.1-4+deb11u1) ... Setting up libpcre3-dev:amd64 (2:8.39-13) ... Setting up libcommons-io-java (2.8.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up openssh-client (1:8.4p1-5+deb11u3) ... Setting up gpgsm (2.2.27-2+deb11u2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up libheif1:amd64 (1.11.0-1) ... Setting up libpq5:amd64 (13.13-0+deb11u1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up proj-bin (7.2.1-1) ... Setting up dconf-service (0.38.0-2) ... Setting up rubygems-integration (1.18) ... Setting up binutils (2.35.2-2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libatspi2.0-0:amd64 (2.38.0-4+deb11u1) ... Setting up libreadline-dev:amd64 (8.1-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up nodejs (12.22.12~dfsg-1~deb11u4) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up rna-star (2.7.8a+dfsg-2) ... Setting up libguice-java (4.2.3-2) ... Setting up node-argparse (2.0.1-1) ... Setting up node-d3-path (1.0.9-2) ... Setting up libgeotiff5:amd64 (1.6.0-1) ... Setting up node-he (1.2.0-1) ... Setting up samtools (1.11-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up node-clone (2.1.2-2) ... Setting up node-has-flag (4.0.0-1) ... Setting up libxnvctrl0:amd64 (470.141.03-1~deb11u1) ... Setting up salmon (1.4.0+ds1-1+b4) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libatk-bridge2.0-0:amd64 (2.38.0-1) ... Setting up node-inherits (2.0.4-1) ... Setting up dirmngr (2.2.27-2+deb11u2) ... Created symlink /etc/systemd/user/sockets.target.wants/dirmngr.socket → /usr/lib/systemd/user/dirmngr.socket. Setting up node-path-is-absolute (2.0.0-1) ... Setting up node-iconv-lite (0.5.1-3) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up node-safe-buffer (5.2.1+~cs2.1.2-1) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up node-d3-polygon (1.0.5-3) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up node-y18n (4.0.0-4) ... Setting up adwaita-icon-theme (3.38.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libdata-dump-perl (1.23-1.1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Setting up node-d3-quadtree (1.0.7-2) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up node-balanced-match (1.0.0-1) ... Setting up libxml-xpathengine-perl (0.14-1) ... Setting up node-brace-expansion (2.0.0-1) ... Setting up libjansi-java (1.18-1) ... Setting up libnotify4:amd64 (0.7.9-3) ... Setting up coinor-libclp1 (1.17.5+repack1-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.40.2-2) ... Setting up sphinx-common (3.4.3-2) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up node-set-blocking (2.0.0-1.1) ... Setting up libxv1:amd64 (2:1.0.11-1) ... Setting up node-repeat-string (1.6.1-1) ... Setting up libio-html-perl (1.004-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-4+deb11u1) ... Setting up node-d3-collection (1.0.7-3) ... Setting up node-signal-exit (3.0.3-1) ... Setting up node-randombytes (2.1.0-1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up node-wrappy (1.0.2-1.1) ... Setting up gcc-10 (10.2.1-6) ... Setting up libdpkg-perl (1.20.13) ... Setting up node-d3-voronoi (1.1.4-3) ... Setting up node-require-directory (2.1.1-1.1) ... Setting up node-d3-dispatch (1.0.6-2) ... Setting up node-d3-time (1.0.11-4) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libnotify-bin (0.7.9-3) ... Setting up gpg-wks-server (2.2.27-2+deb11u2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up node-defaults (1.0.3-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Setting up node-commander (6.2.1-2) ... Setting up node-d3-array (1.2.4-3) ... Setting up libhttpclient-java (4.5.13-2) ... Setting up node-graceful-fs (4.2.4+repack-1) ... Setting up node-merge-stream (2.0.0+~1.1.2-1) ... Setting up xauth (1:1.1-1) ... Setting up libgdk-pixbuf2.0-bin (2.42.2+dfsg-1+deb11u1) ... Setting up lmodern (2.004.5-6.1) ... Setting up libnetcdf18:amd64 (1:4.7.4-1) ... Setting up libncurses5-dev:amd64 (6.2+20201114-2+deb11u2) ... Setting up node-binary-extensions (2.2.0-1) ... Setting up node-mimic-fn (3.1.0-1) ... Setting up node-path-dirname (1.0.2-1.1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libwagon-http-java (3.3.4-1) ... Setting up libmaven-shared-utils-java (3.3.0-1+deb11u1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up node-minimatch (3.0.4+~3.0.3-1+deb11u2) ... Setting up coinor-libcgl1 (0.60.3+repack1-2) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up node-d3-geo (1.11.9-4) ... Setting up node-set-immediate-shim (2.0.0-1) ... Setting up node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Setting up mailcap (3.69) ... Setting up node-npm-run-path (2.0.2-2) ... Setting up tex-gyre (20180621-3.1) ... Setting up node-color-convert (1.9.3-1) ... Setting up node-lodash (4.17.21+dfsg+~cs8.31.173-1) ... Setting up liburi-perl (5.08-1) ... Setting up libx11-protocol-perl (0.56-7.1) ... Setting up node-d3-random (1.1.2-3) ... Setting up node-async-each (1.0.3-1) ... Setting up python3.9 (3.9.2-1) ... Setting up node-is-extglob (2.1.1-1) ... Setting up node-ms (2.1.3+~cs0.7.31-1) ... Setting up node-shebang-command (1.2.0-1.1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up node-ansi-colors (4.1.1-2) ... Setting up r-cran-bh (1.74.0-1) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up node-fs.realpath (1.0.0-1.1) ... Setting up mesa-vulkan-drivers:amd64 (20.3.5-1) ... Setting up node-diff (4.0.2~dfsg-2) ... Setting up coinor-libcbc3:amd64 (2.10.5+ds1-3) ... Setting up node-d3-timer (1.0.10-1) ... Setting up node-highlight.js (9.18.5+dfsg1-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up node-object-assign (4.1.1-3) ... Setting up node-is-glob (4.0.1-1) ... Setting up node-d3-color (1.2.8-2) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up node-d3-interpolate (1.4.0-2) ... Setting up node-d3-queue (3.0.7-11) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up node-mem (1.1.0-1.1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up libtie-ixhash-perl (1.23-2.1) ... Setting up libplexus-io-java (3.2.0-1.1) ... Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up node-supports-color (8.1.0+~7.2.0-1) ... Setting up node-invert-kv (3.0.1-1) ... Setting up node-d3-format (1:1.4.1-3) ... Setting up node-p-limit (3.1.0+~cs2.3.0-1) ... Setting up g++-10 (10.2.1-6) ... Setting up libfile-listing-perl (6.14-1) ... Setting up mime-support (3.66) ... Setting up node-ansi-regex (5.0.1-1~deb11u1) ... Setting up libgs9:amd64 (9.53.3~dfsg-7+deb11u6) ... Setting up node-d3-hierarchy (1.1.8-3) ... Setting up node-d3-ease (1.0.5-3) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up node-strip-json-comments (3.1.1-1) ... Setting up gpg-wks-client (2.2.27-2+deb11u2) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up node-once (1.4.0-3) ... Setting up dconf-gsettings-backend:amd64 (0.38.0-2) ... Setting up libfont-afm-perl (1.20-3) ... Setting up node-browser-stdout (1.3.1-2) ... Setting up libmaven3-core-java (3.6.3-5) ... Setting up libfile-fcntllock-perl (0.22-3+b7) ... Setting up node-get-caller-file (1.0.2-1.1) ... Setting up node-require-main-filename (2.0.0-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up node-d3-time-format (2.1.3-3) ... Setting up libsis-jhdf5-java (19.04.0+dfsg-4) ... Setting up node-d3-scale-chromatic (1.5.0-2) ... Setting up libio-stringy-perl (2.111-3) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up node-serialize-javascript (5.0.1-2) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libauthen-sasl-perl (2.1600-1.1) ... Setting up preview-latex-style (12.2-1) ... Setting up node-isexe (2.0.0-5) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libxcursor1:amd64 (1:1.2.0-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up node-path-exists (4.0.0-2) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libpng-dev:amd64 (1.6.37-3) ... Setting up node-d3-chord (1.0.6-3) ... Setting up node-escape-string-regexp (4.0.0-1) ... Setting up node-p-locate (5.0.0-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up node-which-module (2.0.0-1) ... Setting up libjpeg-dev:amd64 (1:2.0.6-4) ... Setting up dvisvgm (2.11.1-1) ... Setting up node-decamelize (4.0.0-1) ... Setting up libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Setting up node-normalize-path (3.0.0-2) ... Setting up libnet-http-perl (6.20-1) ... Setting up node-kind-of (6.0.3+dfsg-1) ... Setting up node-growl (1.10.5-2) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up node-d3-selection (1.4.0-6) ... Setting up python3 (3.9.2-3) ... Setting up node-is-binary-path (2.1.0-1) ... Setting up node-debug (4.3.1+~cs4.1.5-1) ... Setting up libfindbin-libs-perl (2.190.02-1) ... Setting up libjs-util (0.10.3-4) ... Setting up node-camelcase (6.2.0-2) ... Setting up node-d3-axis (1.0.12-3) ... Setting up libxaw7:amd64 (2:1.0.13-1.1) ... Setting up ghostscript (9.53.3~dfsg-7+deb11u6) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up x11-xserver-utils (7.7+8) ... Setting up node-d3-shape (1.3.7-2) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-webencodings (0.5.1-2) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up node-yargs-parser (18.1.3+~15.0.0-1) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-multidict (5.1.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up gcc (4:10.2.1-1) ... Setting up dpkg-dev (1.20.13) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up python3-async-timeout (3.0.1-1.1) ... Setting up liberror-perl (0.17029-1) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up node-wcwidth.js (1.0.0-1.1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-simplejson (3.17.2-1) ... Setting up python3-isodate (0.6.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up node-locate-path (6.0.0-1) ... Setting up libmagickcore-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.3+deb11u2) ... Setting up python3-roman (2.0.0-5) ... Setting up node-d3-drag (1.2.5-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up node-rw (1.3.3-2) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up coinor-cbc (2.10.5+ds1-3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-humanfriendly (9.1-1) ... Setting up node-ansi-styles (4.2.1-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-avro (1.10.1+dfsg-1) ... Setting up python3-werkzeug (1.0.1+dfsg1-2+deb11u1) ... Setting up python3-jmespath (0.10.0-1) ... Setting up python3-gi (3.38.0-2) ... Setting up node-d3-scale (2.2.2-3) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.59-2) ... Setting up libhdf5-dev (1.10.6+repack-4+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libgd3:amd64 (2.3.0-2) ... Setting up node-strip-ansi (6.0.0-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up gfortran-10 (10.2.1-6) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up pkg-config (0.29.2-1) ... Setting up node-chalk (4.1.0-1) ... Setting up python3-typing-extensions (3.7.4.3-1) ... Setting up git (1:2.30.2-1+deb11u2) ... Setting up node-which (2.0.2+~cs1.3.2-1) ... Setting up node-lcid (3.1.1-1) ... Setting up python3-html5lib (1.1-3) ... Setting up node-d3-force (1.2.1-2) ... Setting up libfile-desktopentry-perl (0.22-2) ... Setting up node-d3-contour (1.3.2-4) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libmaven-file-management-java (3.0.0-1) ... Setting up at-spi2-core (2.38.0-4+deb11u1) ... Setting up libpoppler102:amd64 (20.09.0-3.1+deb11u1) ... Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up node-inflight (1.0.6-1.1) ... Setting up python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Setting up python3-rdflib (5.0.0-1.1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up node-glob-parent (5.1.1+~5.1.0-2) ... Setting up gnupg (2.2.27-2+deb11u2) ... Setting up python3-pyasn1 (0.4.8-1) ... Setting up x11-utils (7.7+5) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up build-essential (12.9) ... Setting up libmagickwand-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.3+deb11u2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-py2bit (0.3.0-6+b1) ... Setting up python3-msgpack (1.0.0-6+b1) ... Setting up libcairo-gobject2:amd64 (1.16.0-5) ... Setting up python3-datrie:amd64 (0.8.2-1+b1) ... Setting up node-d3-dsv (1.1.1-5) ... Setting up python3-shellescape (3.4.1-4) ... Setting up libatk-wrapper-java (0.38.0-2+deb11u1) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up node-anymatch (3.1.1+~2.2.2-1) ... Setting up python3-argcomplete (1.8.1-1.5) ... Setting up python3-prettytable (0.7.2-5) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-coloredlogs (7.3-2) ... Setting up node-d3-transition (1.3.2-3) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-yarl (1.6.3-2) ... Setting up python3-smmap (4.0.0-1) ... Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-mistune (0.8.4-4) ... Setting up libalgorithm-diff-xs-perl (0.04-6+b1) ... Setting up python3-soupsieve (2.2.1-1) ... Setting up python3-websocket (0.57.0-1) ... update-alternatives: using /usr/bin/python3-wsdump to provide /usr/bin/wsdump (wsdump) in auto mode Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libgtk-3-common (3.24.24-4+deb11u3) ... Setting up python3-cffi-backend:amd64 (1.14.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up libc-devtools (2.31-13+deb11u8) ... Setting up libalgorithm-merge-perl (0.08-3) ... Setting up node-string-width (4.2.0-1) ... Setting up libhttp-message-perl (6.28-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up libhtml-form-perl (6.07-1) ... Setting up python3-irodsclient (0.8.1-2) ... Setting up python3-blinker (1.4+dfsg1-0.3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-toposort (1.6-1) ... Setting up gsettings-desktop-schemas (3.38.0-2) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up tk8.6 (8.6.11-2) ... Setting up python3-configargparse (1.2.3-1) ... Setting up python3-arcp (0.2.1-3) ... Setting up libfabric1 (1.11.0-2) ... Setting up libfile-mimeinfo-perl (0.30-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up python3-rdflib-jsonld (0.5.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up node-is-number (7.0.0-1.1) ... Setting up python3-ftputil (3.4-3) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up node-end-of-stream (1.4.4-1) ... Setting up python3-renderpm:amd64 (3.5.59-2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-sparqlwrapper (1.8.5-1) ... Setting up node-pump (3.0.0-4) ... Setting up libmagickcore-6.q16-6-extra:amd64 (8:6.9.11.60+dfsg-1.3+deb11u2) ... Setting up libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Setting up python3-jwt (1.7.1-2) ... Setting up python3-cachetools (4.2.1-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-deeptoolsintervals (0.1.9-3+b2) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-pulp (1.6.0+dfsg1-5) ... /usr/lib/python3/dist-packages/pulp/pulp.py:700: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self /usr/lib/python3/dist-packages/pulp/pulp.py:720: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self Setting up python3-alabaster (0.7.8-1.1) ... Setting up python3-mypy-extensions (0.4.3-2) ... Setting up node-d3-zoom (1.8.3-2) ... Setting up python3-olefile (0.46-3) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-pyinotify (0.9.6-1.3) ... Setting up python3-retrying (1.3.3-4) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.2-1+b2) ... Setting up texlive-plain-generic (2020.20210202-3) ... Setting up node-find-up (5.0.0-1) ... Setting up python3-itsdangerous (1.1.0-3) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up node-d3-fetch (1.2.0-1) ... Setting up python3-yappi (1.0-1+b5) ... Setting up node-util (0.10.3-4) ... Setting up libhtml-format-perl (2.12-1.1) ... Setting up python3-gitdb (4.0.5-1) ... Setting up python3-uamqp (1.2.13-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.5+ds-2) ... Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up python3-bs4 (4.9.3-1) ... Setting up libatk-wrapper-java-jni:amd64 (0.38.0-2+deb11u1) ... Setting up python3-prov (1.5.2-2) ... Setting up librsvg2-2:amd64 (2.50.3+dfsg-1+deb11u1) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-xopen (1.1.0-1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up node-wrap-ansi (4.0.0-2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up node-glob (7.1.6+~7.1.3-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up node-readdirp (3.5.0-2) ... Setting up python3-pyasn1-modules (0.2.1-1) ... Setting up python3-cryptography (3.3.2-1) ... Setting up python3-git (3.1.14-1) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up node-get-stream (6.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-squarem (2021.1-1) ... Setting up r-cran-multicore (0.2-1+b3) ... Setting up libgvc6 (2.42.2-5) ... Setting up r-cran-fastmatch (1.1-0-3) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up python3-markdown (3.3.4-1) ... Setting up r-cran-rcppprogress (0.4.2-2) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up librsvg2-common:amd64 (2.50.3+dfsg-1+deb11u1) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up python3-colormath (3.0.0-1.1) ... Setting up r-cran-farver (2.0.3-1+b1) ... Setting up r-cran-pls (2.7-3-1) ... Setting up python3-pybigwig (0.3.17-1+b4) ... Setting up r-cran-formatr (1.7-2) ... Setting up r-cran-formula (1.2-4-1) ... Setting up node-assert (1.5.0-1) ... Setting up r-cran-hexbin (1.28.2-1) ... Setting up r-cran-remotes (2.2.0-2) ... Setting up imagemagick-6.q16 (8:6.9.11.60+dfsg-1.3+deb11u2) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up python3-ruamel.yaml (0.16.12-2) ... Setting up r-cran-zip (2.1.1-1) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up r-cran-spatstat.utils (2.0-0-1) ... Setting up python3-adal (1.2.2-1) ... Setting up r-cran-whisker (0.4-2) ... Setting up libhttp-daemon-perl (6.12-1+deb11u1) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up node-d3-brush (1.1.5-2) ... Setting up r-cran-locfit (1.5-9.4-2+b1) ... Setting up python3-traitlets (5.0.5-1) ... Setting up r-cran-cluster (2.1.1-1) ... Setting up r-cran-fontbitstreamvera (0.1.1+dfsg-4) ... Setting up r-cran-sparsem (1.81-1) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up r-cran-statmod (1.4.35-1) ... Setting up python3-rsa (4.0-4) ... Setting up r-cran-nnet (7.3-15-1) ... Setting up r-cran-tensor (1.5-4) ... Setting up node-wide-align (1.1.3-1) ... Setting up r-cran-lazyeval (0.2.2-1+b1) ... Setting up tipa (2:1.3-20.1) ... Setting up r-cran-lpsolve (5.6.15-1+b1) ... Setting up python3-cachecontrol (0.12.6-1) ... Setting up glib-networking:amd64 (2.66.0-2) ... Setting up r-cran-clipr (0.7.1-1) ... Setting up r-cran-commonmark (1.7-2) ... Setting up r-cran-proxy (0.4-24-2) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up r-cran-jpeg (0.1-8.1-1+b1) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-lzstring (1.0.4-1.1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up tk (8.6.11+1) ... Setting up r-cran-rsclient (0.7-3-2+b4) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-cran-randomfieldsutils (0.5.3-2) ... Setting up python3-htseq (0.13.5-1) ... Setting up r-cran-testit (0.12-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up python3-jupyter-core (4.7.1-1+deb11u1) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up node-cliui (4.1.0-2) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up python3-dnaio (0.5.0-1) ... Setting up r-cran-quadprog (1.5-8-1+b1) ... Setting up python3-dropbox (10.10.0-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-prettycode (1.1.0-2) ... Setting up graphviz (2.42.2-5) ... Setting up r-cran-fs (1.5.0+dfsg-1) ... Setting up r-cran-filehash (2.4-2-3) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-curl (4.3+dfsg-1+b1) ... Setting up r-cran-combinat (0.0-8-7) ... Setting up r-cran-codetools (0.2-18-1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up r-cran-nloptr (1.2.2.2-1) ... Setting up r-cran-boot (1.3-27-1) ... Setting up node-to-regex-range (5.0.1-2) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up r-cran-maps (3.3.0-3) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-base-dev (4.0.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up r-cran-listenv (0.8.0+dfsg-1) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up libsoup2.4-1:amd64 (2.72.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up littler (0.3.12-1) ... Setting up node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Setting up r-cran-multicool (0.1-11-2+b1) ... Setting up python3-spectra (0.0.11-2) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-dynamictreecut (1.63-1-3) ... Setting up r-cran-xfun (0.20-1) ... Setting up r-cran-vgam (1.1-5-1) ... Setting up r-cran-rcpphnsw (0.3.0.9001+ds-1+b1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-deoptimr (1.0-8-1+b3) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-backports (1.2.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-slam (0.1-48-1) ... Setting up r-cran-gsl (2.1-6-2) ... Setting up r-cran-mime (0.9-1+b1) ... Setting up r-cran-praise (1.0.0-4) ... Setting up r-cran-generics (0.1.0-1) ... Setting up python3-openssl (20.0.1-1) ... Setting up python3-flask (1.1.2-2+deb11u1) ... Setting up python3-pydot (1.4.2-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-iterators (1.0.13-1) ... Setting up r-cran-spatial (7.3-13-1) ... Setting up r-cran-fontliberation (0.1.0+dfsg-4) ... Setting up r-cran-abind (1.4-5-2) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-sfsmisc (1.1-8-1) ... Setting up r-cran-yaml (2.2.1-1+b1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-xml2 (1.3.2-1+b1) ... Setting up r-cran-rann (2.6.1-1+b2) ... Setting up r-cran-gower (0.2.2-1) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-docopt (0.7.1-2) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-timedate (3043.102-1+b2) ... Setting up r-cran-highr (0.8+dfsg-2) ... Setting up r-cran-foreach (1.5.1-1) ... Setting up python3-schema-salad (7.0.20210124093443-1) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-fastica (1.2-2-2+b1) ... Setting up mpi-default-bin (1.13) ... Setting up python3-aiohttp (3.7.4-1) ... Setting up r-bioc-rhdf5lib (1.12.1+dfsg-3+b1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up python3-msal (1.9.0-1) ... Setting up r-cran-sendmailr (1.2-1-5) ... Setting up r-cran-mockr (0.1-3) ... Setting up r-cran-checkmate (2.0.0-1+b1) ... Setting up python3-msal-extensions (0.3.0-1) ... Setting up r-cran-mclust (5.4.7-1) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up r-cran-setrng (2013.9-1-3) ... Setting up r-cran-modeldata (0.1.0-1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-gtools (3.8.2-1+b1) ... Setting up cwltool (3.0.20210124104916-3+deb11u1) ... Setting up r-cran-kernlab (0.9-29-1+b1) ... Setting up node-d3 (5.16.0-4) ... Setting up r-cran-data.table (1.13.6+dfsg-1) ... Setting up r-cran-xopen (1.0.0-2) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-foreign (0.8.81-1) ... Setting up node-os-locale (5.0.0-1) ... Setting up r-bioc-rhdf5filters (1.2.0+dfsg2-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-polyclip (1.10-0-2) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-cran-fnn (1.1.3-2) ... Setting up r-cran-mlbench (2.1-3-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-biocmanager (1.30.10+dfsg-2) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-deldir (0.2-9-1) ... Setting up r-cran-goftest (1.2-2-1+b1) ... Setting up texlive-bibtex-extra (2020.20210202-3) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-rmpi (0.6-9-1+b2) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-cran-sodium (1.1-1+b2) ... Setting up r-cran-r.methodss3 (1.8.1-1) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-corrplot (0.84-3) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-mapproj (1.2.7-1+b1) ... Setting up r-cran-linprog (0.9-2-2) ... Setting up r-cran-sp (1:1.4-5-1) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-brew (1.0-6-4) ... Setting up python3-oauthlib (3.1.0-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-parallelly (1.23.0-1) ... Setting up r-cran-warp (0.2.0-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up python3-cutadapt (3.2-2) ... Setting up r-cran-rex (1.2.0-2) ... Setting up r-cran-hwriter (1.3.2-4) ... Setting up r-cran-markdown (1.1+dfsg-1+b1) ... Setting up r-cran-gitcreds (0.1.1-2) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up r-cran-plotrix (3.8-1-1) ... Setting up r-cran-cpp11 (0.2.6-1) ... Setting up r-cran-mvtnorm (1.1-1-1) ... Setting up r-cran-sitmo (2.0.1-2+b1) ... Setting up r-cran-plyr (1.8.6-2) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up python3-google-auth (1.5.1-3) ... Setting up r-cran-ini (0.3.1-2) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-runit (0.4.32-3) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up python3-botocore (1.20.0+repack-1) ... Setting up r-cran-teachingdemos (2.12-2) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-bioc-limma (3.46.0+dfsg-1) ... Setting up r-cran-purrr (0.3.4-1+b1) ... Setting up r-cran-rmysql (0.10.21-1) ... Setting up r-cran-zoo (1.8-8-1+b1) ... Setting up r-cran-geosphere (1.5-10-2) ... Setting up r-cran-units (0.6-7-1) ... Setting up r-cran-later (1.1.0.1+dfsg-1) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-doparallel (1.0.16-1) ... Setting up r-cran-magic (1.5-9-2) ... Setting up r-cran-htmltools (0.5.1.1-1) ... Setting up imagemagick (8:6.9.11.60+dfsg-1.3+deb11u2) ... Setting up r-cran-tinytex (0.29-1) ... Setting up r-cran-irlba (2.3.3-2) ... Setting up r-bioc-tximport (1.18.0+dfsg-1) ... Setting up r-cran-kernsmooth (2.23-18-1) ... Setting up r-cran-cba (0.2-21-2) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-cran-plotmo (3.6.0-1) ... Setting up r-cran-robustbase (0.93-7-1) ... Setting up r-cran-rpostgresql (0.6-2+dfsg-3) ... Setting up r-cran-domc (1.3.7-1) ... Setting up python3-pygraphviz (1.7-2) ... Setting up r-cran-tikzdevice (0.12.3.1-1) ... Setting up r-cran-cachem (1.0.3-1) ... Setting up r-cran-rcpproll (0.3.0-2) ... Setting up texlive-xetex (2020.20210202-3) ... Setting up r-cran-catools (1.18.1-1) ... Setting up r-cran-rtsne (0.15-2+b1) ... Setting up r-cran-rcpparmadillo (0.10.2.1.0-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up r-cran-dqrng (0.2.1+dfsg-4+b1) ... Setting up r-cran-cvst (0.2-2-3) ... Setting up r-cran-rjson (0.2.20-2) ... Setting up libsoup-gnome2.4-1:amd64 (2.72.0-2) ... Setting up r-cran-globals (0.14.0-1) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-cran-sessioninfo (1.1.1-4) ... Setting up r-cran-maptools (1:1.0-2+dfsg-1) ... Setting up r-bioc-sparsematrixstats (1.2.1+dfsg-4) ... Setting up r-cran-gdata (2.18.0-3) ... Setting up r-cran-webutils (1.1-1+b1) ... Setting up python3-requests-oauthlib (1.0.0-1.1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-rcppeigen (0.3.3.9.1-1) ... Setting up r-cran-bbmisc (1.11-4) ... Setting up r-bioc-graph (1.68.0-1) ... Setting up r-cran-fontquiver (0.2.1-3) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up multiqc (1.9+dfsg-3) ... /usr/lib/python3/dist-packages/multiqc/modules/custom_content/custom_content.py:71: SyntaxWarning: "is not" with a literal. Did you mean "!="? cust_mods[c_id]['config'].update( { k:v for k, v in f.items() if k is not 'data' } ) Setting up r-cran-minqa (1.2.4-1+b5) ... Setting up r-cran-lubridate (1.7.9.2+dfsg-1) ... Setting up r-bioc-rbgl (1.66.0+dfsg-1) ... Setting up node-fill-range (7.0.1-2) ... Setting up r-cran-openssl (1.4.3+dfsg-2) ... Setting up librest-0.7-0:amd64 (0.8.1-1.1) ... Setting up r-cran-base64url (1.4-2+b1) ... Setting up node-yargs (15.3.1+repack-2) ... Setting up r-bioc-biocviews (1.58.1-2) ... Setting up r-cran-rversions (2.0.2-1) ... Setting up r-bioc-hsmmsinglecell (1.10.0-1) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-cran-class (7.3-18-1) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-modelmetrics (1.2.2.2-1+b1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-cran-selectr (0.4-2-2) ... Setting up r-cran-gprofiler (0.7.0-2) ... Setting up python3-kubernetes (12.0.1-1) ... Setting up r-bioc-edger (3.32.1+dfsg-1) ... Setting up r-cran-matrixmodels (0.4-1-3) ... Setting up libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Setting up cutadapt (3.2-2) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-ks (1.11.7-1+b1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-timeseries (3062.100-2) ... Setting up r-bioc-rhdf5 (2.34.0+dfsg-1) ... Setting up r-cran-mda (0.5-2-1) ... Setting up python3-s3transfer (0.3.4-1) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-logcondens (2.1.5-3) ... Setting up r-cran-proc (1.17.0.1-1) ... Setting up r-cran-survival (3.2-7-1) ... Setting up libgtk-3-bin (3.24.24-4+deb11u3) ... Setting up r-cran-igraph (1.2.6-1) ... Setting up r-cran-xts (0.12.1-1) ... Setting up python3-nbformat (5.1.2-1) ... Setting up r-cran-sparsesvd (0.2-2) ... Setting up r-cran-r.oo (1.24.0-1) ... Setting up r-cran-latticeextra (0.6-29-3) ... Setting up libvte-2.91-0:amd64 (0.62.3-1) ... Setting up r-cran-future (1.21.0+dfsg-1) ... Setting up r-cran-geometry (0.4.5-1+b1) ... Setting up notification-daemon (3.20.0-4) ... Setting up r-cran-lme4 (1.1-26-1) ... Setting up r-cran-htmlwidgets (1.5.3+dfsg-1) ... Setting up python3-msrest (0.6.21-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-cran-rsvd (1.0.3-3) ... Setting up r-cran-randomfields (3.3.8-1+b1) ... Setting up r-cran-raster (3.4-5-1) ... Setting up r-cran-fts (0.9.9.2-2) ... Setting up r-cran-systemfonts (1.0.0-1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-ddrtree (0.1.5-2) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-cran-lava (1.6.8.1-1) ... Setting up r-cran-covr (3.5.1+dfsg-2) ... Setting up r-cran-promises (1.1.1+dfsg-1) ... Setting up r-cran-e1071 (1.7-4-1) ... Setting up r-cran-spatstat.data (1.7-0-1) ... Setting up r-bioc-beachmat (2.6.4+ds-1) ... Setting up r-cran-credentials (1.3.0-2) ... Setting up r-cran-conquer (1.0.2-1) ... Setting up python3-plotly (4.14.3+dfsg-1) ... Setting up python3-boto3 (1.13.14-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-knitr (1.31+dfsg-1) ... Setting up r-cran-earth (5.3.0-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up node-braces (3.0.2+~3.0.0-1) ... Setting up r-cran-rspectra (0.16-0-1+b1) ... Setting up r-cran-drr (0.0.4-2) ... Setting up python3-msrestazure (0.6.2-1) ... Setting up r-cran-gplots (3.1.1-1) ... Setting up r-cran-gh (1.2.0-1) ... Setting up r-bioc-biocneighbors (1.8.2+ds-1) ... Setting up r-cran-ttr (0.24.2-1) ... Setting up r-cran-ranger (0.12.1-3+b1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-freetypeharfbuzz (0.2.6+dfsg-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-cran-timereg (1.9.8-1) ... Setting up node-chokidar (3.4.3-3) ... Setting up r-cran-pheatmap (1.0.12-2) ... Setting up r-bioc-hdf5array (1.18.1-3) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-cran-rocr (1.0-11-2) ... Setting up r-cran-prodlim (2019.11.13-1+b1) ... Setting up r-cran-quantreg (5.85-1) ... Setting up r-cran-mlmetrics (1.1.1-3) ... Setting up trim-galore (0.6.6-1) ... Setting up r-cran-ddalpha (1.3.11-1+b1) ... Setting up r-bioc-biocsingular (1.6.0+ds-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-cran-dimred (0.2.3-2) ... Setting up r-cran-httpuv (1.5.5+dfsg-1) ... Setting up r-cran-rpart (4.1-15-2+b1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-cran-dygraphs (1.1.1.6+dfsg-2) ... Setting up r-bioc-delayedmatrixstats (1.12.3+ds-1) ... Setting up termit (3.1-1) ... update-alternatives: using /usr/bin/termit to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode Setting up r-cran-gert (1.1.0-1) ... Setting up r-cran-qlcmatrix (0.9.7-2) ... Setting up r-cran-shiny (1.5.0+dfsg-2) ... Setting up r-cran-shinyjs (2.0.0-1) ... Setting up r-cran-gdtools (0.2.3-1) ... Setting up r-cran-ipred (0.9-9-2) ... Setting up r-cran-furrr (0.2.2-1) ... Setting up r-cran-tidyselect (1.1.0+dfsg-1) ... Setting up r-cran-slider (0.1.5-2) ... Setting up r-bioc-bluster (1.0.0+dfsg-2) ... Setting up r-cran-miniui (0.1.1.1-3) ... Setting up r-cran-classint (0.4-3-1+b1) ... Setting up r-cran-hms (1.0.0-1) ... Setting up r-cran-rmarkdown (2.6+dfsg-1) ... Setting up r-cran-mets (1.2.8.1+dfsg-1) ... Setting up r-cran-blob (1.2.1-2) ... Setting up r-cran-rcmdcheck (1.3.3-2) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-cran-roxygen2 (7.1.1-1) ... Setting up python3-azure (20201208+git-6) ... Setting up r-cran-dplyr (1.0.4-1) ... Setting up r-cran-dbplyr (2.1.0-1) ... Setting up r-cran-rsqlite (2.2.3-1) ... Setting up r-cran-decor (1.0.0-2) ... Setting up r-cran-progress (1.2.2-2) ... Setting up mocha (8.2.1+ds1+~cs29.4.27-3) ... Setting up r-cran-quantmod (0.4.18-1) ... Setting up r-cran-bookdown (0.21+dfsg-1) ... Setting up r-recommended (4.0.4-1) ... Setting up r-cran-crosstalk (1.1.1+dfsg-2) ... Setting up r-cran-dt (0.17+dfsg-3) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-glmgampoi (1.2.0+dfsg-6) ... Setting up r-bioc-annotationdbi (1.52.0-1) ... Setting up r-cran-usethis (2.0.0-1) ... Setting up r-bioc-go.db (3.12.1-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up r-cran-spatstat (1.64-1-1) ... Setting up r-cran-batchjobs (1.8-2) ... Setting up r-cran-tseries (0.10-48-1) ... Setting up python3-azure-storage (20201208+git-6) ... Setting up node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Setting up r-bioc-annotate (1.68.0+dfsg-1) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-cran-tidyr (1.1.2-1) ... Setting up r-cran-recipes (0.1.15+dfsg-1) ... Setting up r-cran-rsample (0.0.8-1) ... Setting up r-bioc-genefilter (1.72.1-1) ... Setting up r-cran-cliapp (0.1.1-1) ... Setting up r-cran-batchtools (0.9.15+dfsg-1) ... Setting up r-bioc-biocstyle (2.18.1+dfsg-3) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Setting up r-bioc-geneplotter (1.68.0-1) ... Setting up r-bioc-org.hs.eg.db (3.12.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Setting up r-bioc-singlecellexperiment (1.12.0+ds-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-mockery (0.4.2+dfsg-2) ... Setting up r-cran-broom (0.7.4+dfsg-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up node-dagre-d3-renderer (0.6.4+dfsg-3) ... Setting up r-bioc-shortread (1.48.0-2) ... Setting up r-bioc-scuttle (1.0.4+dfsg-5) ... Setting up r-cran-dbitest (1.7.0-2) ... Setting up r-cran-devtools (2.3.2-1) ... Setting up r-bioc-scran (1.18.5+dfsg-1) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-deseq2 (1.30.1+dfsg-1) ... Setting up r-cran-caret (6.0-86+dfsg-1+b1) ... Setting up r-cran-colourpicker (1.1.0+dfsg-1) ... Setting up r-cran-viridis (0.5.1-3) ... Setting up r-cran-ggthemes (4.2.4-1) ... Setting up r-cran-ggrepel (0.9.1-1) ... Setting up r-cran-vdiffr (0.3.3+dfsg-1) ... Setting up r-cran-densityclust (0.3-2) ... Setting up r-bioc-monocle (2.18.0-1) ... Setting up r-cran-plotly (4.9.3+dfsg-2) ... Setting up rake (13.0.3-1) ... Setting up odbcinst (2.3.6-0.1+b1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up libwww-perl (6.52-1) ... Setting up openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.22+7-1~deb11u1) ... Setting up libruby2.7:amd64 (2.7.4-1+deb11u1) ... Setting up default-jre (2:1.11-72) ... Setting up ant (1.10.9-4) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up odbcinst1debian2:amd64 (2.3.6-0.1+b1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libxml-parser-perl:amd64 (2.46-2) ... Setting up libxml-twig-perl (1:3.52-1) ... Setting up ruby2.7 (2.7.4-1+deb11u1) ... Setting up libnet-dbus-perl (1.2.0-1+b1) ... Setting up ant-optional (1.10.9-4) ... Setting up libgdal28 (3.2.2+dfsg-2+deb11u2) ... Setting up ruby (1:2.7+2) ... Setting up r-cran-rgdal (1.5-21+dfsg-1) ... Setting up r-cran-sf (0.9-7+dfsg-5) ... Setting up python3-gdal (3.2.2+dfsg-2+deb11u2) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up ruby-rubygems (3.2.5-2) ... Setting up r-cran-lwgeom (0.2-5-2) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Setting up libtxw2-java (2.3.0.1-10) ... Setting up libjaxb-java (2.3.0.1-10) ... Setting up libhtsjdk-java (2.23.0+dfsg-2) ... Setting up fastqc (0.11.9+dfsg-4) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up snakemake (5.24.1-2) ... Setting up python3-sphinx (3.4.3-2) ... Setting up python3-numpydoc (1.1.0-3) ... Setting up python3-deeptools (3.5.0-1) ... Setting up pigx-rnaseq (0.0.10+ds-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... 6m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.0.10+ds-2'] 6m12.3s INFO: Running scripts post_install 6m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_install_exceptions'] 6m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_install_exceptions'] 6m12.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 6m21.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 6m42.9s ERROR: WARN: Broken symlinks: /usr/share/texlive/texmf-dist/tex/latex/pdfx/sRGB_IEC61966-2-1_black_scaled.icc -> ../../../../../color/icc/sRGB_IEC61966-2-1_black_scaled.icc (texlive-latex-extra) /usr/share/doc/libjs-sprintf-js/examples/angular.min.js -> ../../../javascript/angular.js/angular.min.js (libjs-sprintf-js) /usr/share/man/man3/LIST_REMOVE.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_NEXT.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_HEAD.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_BEFORE.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INSERT_AFTER.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_INIT.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_HEAD_INITIALIZER.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_HEAD.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_FOREACH.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_FIRST.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_ENTRY.3 -> list.3 (manpages-dev) /usr/share/man/man3/LIST_EMPTY.3 -> list.3 (manpages-dev) /usr/lib/jvm/java-11-openjdk-amd64/lib/security/blacklisted.certs -> /etc/java-11-openjdk/security/blacklisted.certs (openjdk-11-jre-headless:amd64) /usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd (python3-biopython) 6m43.1s INFO: /bin converted to /usr/bin by /usr merge 6m43.1s INFO: /lib converted to /usr/lib by /usr merge 6m43.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 6m43.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 6m43.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 6m43.1s INFO: /lib/modprobe.d converted to /usr/lib/modprobe.d by /usr merge 6m43.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 6m43.1s INFO: /lib/systemd/network converted to /usr/lib/systemd/network by /usr merge 6m43.1s INFO: /lib/systemd/ntp-units.d converted to /usr/lib/systemd/ntp-units.d by /usr merge 6m43.1s INFO: /lib/systemd/system-generators converted to /usr/lib/systemd/system-generators by /usr merge 6m43.1s INFO: /lib/systemd/system-preset converted to /usr/lib/systemd/system-preset by /usr merge 6m43.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 6m43.2s INFO: /lib/systemd/system/getty.target.wants converted to /usr/lib/systemd/system/getty.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/graphical.target.wants converted to /usr/lib/systemd/system/graphical.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/initrd-root-device.target.wants converted to /usr/lib/systemd/system/initrd-root-device.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/rc-local.service.d converted to /usr/lib/systemd/system/rc-local.service.d by /usr merge 6m43.2s INFO: /lib/systemd/system/rescue.target.wants converted to /usr/lib/systemd/system/rescue.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/sysinit.target.wants converted to /usr/lib/systemd/system/sysinit.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/systemd-localed.service.d converted to /usr/lib/systemd/system/systemd-localed.service.d by /usr merge 6m43.2s INFO: /lib/systemd/system/timers.target.wants converted to /usr/lib/systemd/system/timers.target.wants by /usr merge 6m43.2s INFO: /lib/systemd/system/user-.slice.d converted to /usr/lib/systemd/system/user-.slice.d by /usr merge 6m43.2s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 6m43.2s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 6m43.2s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 6m43.2s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 6m43.2s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 6m43.2s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 6m43.2s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 6m43.2s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 6m43.2s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 6m43.2s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 6m43.2s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 6m43.2s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 6m43.2s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 6m43.2s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 6m43.2s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 6m43.2s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 6m43.2s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 6m43.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 6m43.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 6m43.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 6m43.2s INFO: /sbin converted to /usr/sbin by /usr merge 6m56.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', '-ac', '--ignore-obsolete'] 7m24.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', '-ac', '--ignore-obsolete'] 7m24.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 7m24.9s DUMP: 0.15.6 7m24.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 7m24.9s INFO: Running adequate version 0.15.6 now. 7m24.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'pigx-rnaseq'] 7m25.1s DUMP: pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/pigx_rnaseq.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py 7m25.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'pigx-rnaseq'] 7m25.1s ERROR: WARN: Inadequate results from running adequate! pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/pigx_rnaseq.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py 7m25.1s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 7m25.1s INFO: Running scripts pre_remove 7m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 7m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 7m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 7m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 7m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 8m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 8m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 8m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 8m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 8m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 8m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_exceptions'] 8m57.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/pre_remove_exceptions'] 8m57.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 8m57.8s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed adwaita-icon-theme adwaita-icon-theme 3.38.0-1 install ok installed alsa-topology-conf alsa-topology-conf 1.2.4-1 install ok installed alsa-ucm-conf alsa-ucm-conf 1.2.4-2 install ok installed ant ant 1.10.9-4 install ok installed ant-optional ant-optional 1.10.9-4 install ok installed apt apt 2.2.4 install ok installed at-spi2-core at-spi2-core 2.38.0-4+deb11u1 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed binutils binutils 2.35.2-2 install ok installed binutils-common:amd64 binutils-common 2.35.2-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.35.2-2 install ok installed blt blt 2.5.3+dfsg-4.1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed build-essential build-essential 12.9 install ok installed bzip2 bzip2 1.0.8-4 install ok installed bzip2-doc bzip2-doc 1.0.8-4 install ok installed ca-certificates ca-certificates 20210119 install ok installed ca-certificates-java ca-certificates-java 20190909+deb11u1 install ok installed coinor-cbc coinor-cbc 2.10.5+ds1-3 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.5+ds1-3 install ok installed coinor-libcgl1 coinor-libcgl1 0.60.3+repack1-2 install ok installed coinor-libclp1 coinor-libclp1 1.17.5+repack1-1 install ok installed coinor-libcoinutils3v5 coinor-libcoinutils3v5 2.11.4+repack1-1 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed cpp cpp 4:10.2.1-1 install ok installed cpp-10 cpp-10 10.2.1-6 install ok installed curl curl 7.74.0-1.3+deb11u11 install ok installed cutadapt cutadapt 3.2-2 install ok installed cwltool cwltool 3.0.20210124104916-3+deb11u1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed dbus dbus 1.12.28-0+deb11u1 install ok installed dbus-user-session dbus-user-session 1.12.28-0+deb11u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.38.0-2 install ok installed dconf-service dconf-service 0.38.0-2 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed default-jre default-jre 2:1.11-72 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed diffutils diffutils 1:3.7-5 install ok installed dirmngr dirmngr 2.2.27-2+deb11u2 install ok installed dmsetup dmsetup 2:1.02.175-2.1 install ok installed docutils-common docutils-common 0.16+dfsg-4 install ok installed dpkg dpkg 1.20.13 install ok installed dpkg-dev dpkg-dev 1.20.13 install ok installed dvisvgm dvisvgm 2.11.1-1 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed fakeroot fakeroot 1.25.3-1.1 install ok installed fastqc fastqc 0.11.9+dfsg-4 install ok installed file file 1:5.39-3+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-dejavu-extra fonts-dejavu-extra 2.37-2 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-2 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-liberation fonts-liberation 1:1.07.4-11 install ok installed fonts-liberation2 fonts-liberation2 2.1.3-1 install ok installed fonts-lmodern fonts-lmodern 2.004.5-6.1 install ok installed fonts-lyx fonts-lyx 2.3.6-1 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed fonts-noto-mono fonts-noto-mono 20201225-1 install ok installed fonts-texgyre fonts-texgyre 20180621-3.1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-1 install ok installed g++ g++ 4:10.2.1-1 install ok installed g++-10 g++-10 10.2.1-6 install ok installed gcc gcc 4:10.2.1-1 install ok installed gcc-10 gcc-10 10.2.1-6 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gdal-data gdal-data 3.2.2+dfsg-2+deb11u2 install ok installed gfortran gfortran 4:10.2.1-1 install ok installed gfortran-10 gfortran-10 10.2.1-6 install ok installed ghostscript ghostscript 9.53.3~dfsg-7+deb11u6 install ok installed gir1.2-glib-2.0:amd64 gir1.2-glib-2.0 1.66.1-1+b1 install ok installed git git 1:2.30.2-1+deb11u2 install ok installed git-man git-man 1:2.30.2-1+deb11u2 install ok installed glib-networking:amd64 glib-networking 2.66.0-2 install ok installed glib-networking-common glib-networking-common 2.66.0-2 install ok installed glib-networking-services glib-networking-services 2.66.0-2 install ok installed gnupg gnupg 2.2.27-2+deb11u2 install ok installed gnupg-l10n gnupg-l10n 2.2.27-2+deb11u2 install ok installed gnupg-utils gnupg-utils 2.2.27-2+deb11u2 install ok installed gpg gpg 2.2.27-2+deb11u2 install ok installed gpg-agent gpg-agent 2.2.27-2+deb11u2 install ok installed gpg-wks-client gpg-wks-client 2.2.27-2+deb11u2 install ok installed gpg-wks-server gpg-wks-server 2.2.27-2+deb11u2 install ok installed gpgconf gpgconf 2.2.27-2+deb11u2 install ok installed gpgsm gpgsm 2.2.27-2+deb11u2 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed graphviz graphviz 2.42.2-5 install ok installed grep grep 3.6-1+deb11u1 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.38.0-2 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.5 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.24-4+deb11u3 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hdf5-helpers hdf5-helpers 1.10.6+repack-4+deb11u1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 33.2-1 install ok installed icu-devtools icu-devtools 67.1-7 install ok installed imagemagick imagemagick 8:6.9.11.60+dfsg-1.3+deb11u2 install ok installed imagemagick-6-common imagemagick-6-common 8:6.9.11.60+dfsg-1.3+deb11u2 install ok installed imagemagick-6.q16 imagemagick-6.q16 8:6.9.11.60+dfsg-1.3+deb11u2 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed java-common java-common 0.72 install ok installed javascript-common javascript-common 11+nmu1 install ok installed less less 551-2 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libactivation-java libactivation-java 1.2.0-2 install ok installed libaec-dev:amd64 libaec-dev 1.0.4-1 install ok installed libaec0:amd64 libaec0 1.0.4-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-6+b1 install ok installed libalgorithm-merge-perl libalgorithm-merge-perl 0.08-3 install ok installed libann0 libann0 1.1.2+doc-7 install ok installed libaom0:amd64 libaom0 1.0.0.errata1-3+deb11u1 install ok installed libaopalliance-java libaopalliance-java 20070526-6 install ok installed libapache-pom-java libapache-pom-java 18-1 install ok installed libapparmor1:amd64 libapparmor1 2.13.6-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libargon2-1:amd64 libargon2-1 0~20171227-0.2 install ok installed libargs4j-java libargs4j-java 2.33-1.1 install ok installed libarmadillo10 libarmadillo10 1:10.1.2+dfsg-6+b1 install ok installed libarpack2:amd64 libarpack2 3.8.0-1 install ok installed libasan6:amd64 libasan6 10.2.1-6 install ok installed libasound2:amd64 libasound2 1.2.4-1.1 install ok installed libasound2-data libasound2-data 1.2.4-1.1 install ok installed libassuan0:amd64 libassuan0 2.5.3-7.1 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.38.0-1 install ok installed libatk-wrapper-java libatk-wrapper-java 0.38.0-2+deb11u1 install ok installed libatk-wrapper-java-jni:amd64 libatk-wrapper-java-jni 0.38.0-2+deb11u1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.36.0-2 install ok installed libatk1.0-data libatk1.0-data 2.36.0-2 install ok installed libatomic1:amd64 libatomic1 10.2.1-6 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.38.0-4+deb11u1 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1.1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5+deb11u2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5+deb11u2 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5+deb11u2 install ok installed libbibutils7 libbibutils7 6.10-2 install ok installed libbigwig0:amd64 libbigwig0 0.4.4+dfsg-2 install ok installed libbinutils:amd64 libbinutils 2.35.2-2 install ok installed libblas-dev:amd64 libblas-dev 3.9.0-3+deb11u1 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libblosc1 libblosc1 1.20.1+ds1-2 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost-filesystem1.74.0:amd64 libboost-filesystem1.74.0 1.74.0-9 install ok installed libboost-iostreams1.74.0:amd64 libboost-iostreams1.74.0 1.74.0-9 install ok installed libboost-program-options1.74.0:amd64 libboost-program-options1.74.0 1.74.0-9 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-9 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.8-4 install ok installed libc-ares2:amd64 libc-ares2 1.17.1-1+deb11u3 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc-dev-bin libc-dev-bin 2.31-13+deb11u8 install ok installed libc-devtools libc-devtools 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libc6-dev:amd64 libc6-dev 2.31-13+deb11u8 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.16.0-5 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcbor0:amd64 libcbor0 0.5.0+dfsg-2 install ok installed libcc1-0:amd64 libcc1-0 10.2.1-6 install ok installed libcdi-api-java libcdi-api-java 1.2-3 install ok installed libcdt5:amd64 libcdt5 2.42.2-5 install ok installed libcfitsio9:amd64 libcfitsio9 3.490-3 install ok installed libcgraph6:amd64 libcgraph6 2.42.2-5 install ok installed libcharls2:amd64 libcharls2 2.2.0+dfsg-2 install ok installed libclone-perl libclone-perl 0.45-1+b1 install ok installed libcmark-gfm-extensions0:amd64 libcmark-gfm-extensions0 0.29.0.gfm.0-6 install ok installed libcmark-gfm0:amd64 libcmark-gfm0 0.29.0.gfm.0-6 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-10 install ok installed libcolord2:amd64 libcolord2 1.4.5-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcommons-cli-java libcommons-cli-java 1.4-2 install ok installed libcommons-codec-java libcommons-codec-java 1.15-1 install ok installed libcommons-compress-java libcommons-compress-java 1.20-1 install ok installed libcommons-io-java libcommons-io-java 2.8.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-5 install ok installed libcommons-lang3-java libcommons-lang3-java 3.11-1 install ok installed libcommons-logging-java libcommons-logging-java 1.2-2 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-3 install ok installed libcommons-parent-java libcommons-parent-java 43-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.18-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcryptsetup12:amd64 libcryptsetup12 2:2.3.7-1+deb11u1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.35.2-2 install ok installed libctf0:amd64 libctf0 2.35.2-2 install ok installed libcups2:amd64 libcups2 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installed libdjvulibre21:amd64 libdjvulibre21 3.5.28-2 install ok installed libdom4j-java libdom4j-java 2.1.3-1 install ok installed libdpkg-perl libdpkg-perl 1.20.13 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.104-1 install ok installed libdrm-common libdrm-common 2.4.104-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.104-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.104-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.104-1 install ok installed libdrm2:amd64 libdrm2 2.4.104-1 install ok installed libdtd-parser-java libdtd-parser-java 1.2-1 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libelf1:amd64 libelf1 0.183-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed libepoxy0:amd64 libepoxy0 1.5.5-1 install ok installed libepsilon1:amd64 libepsilon1 0.9.2+dfsg-5 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfabric1 libfabric1 1.11.0-2 install ok installed libfakeroot:amd64 libfakeroot 1.25.3-1.1 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-3 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfido2-1:amd64 libfido2-1 1.6.0-2 install ok installed libfile-basedir-perl libfile-basedir-perl 0.08-1 install ok installed libfile-desktopentry-perl libfile-desktopentry-perl 0.22-2 install ok installed libfile-fcntllock-perl libfile-fcntllock-perl 0.22-3+b7 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libfile-mimeinfo-perl libfile-mimeinfo-perl 0.30-1 install ok installed libfindbin-libs-perl libfindbin-libs-perl 2.190.02-1 install ok installed libfont-afm-perl libfont-afm-perl 1.20-3 install ok installed libfontbox-java libfontbox-java 1:1.8.16-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.4-1 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfreexl1:amd64 libfreexl1 1.0.6-1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libfyba0:amd64 libfyba0 4.1.1-7 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.2.1-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdal28 libgdal28 3.2.2+dfsg-2+deb11u2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf-xlib-2.0-0:amd64 libgdk-pixbuf-xlib-2.0-0 2.40.2-2 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.40.2-2 install ok installed libgdk-pixbuf2.0-bin libgdk-pixbuf2.0-bin 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.2+dfsg-1+deb11u1 install ok installed libgeos-3.9.0:amd64 libgeos-3.9.0 3.9.0-1 install ok installed libgeos-c1v5:amd64 libgeos-c1v5 3.9.0-1 install ok installed libgeotiff5:amd64 libgeotiff5 1.6.0-1 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.3-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgfortran-10-dev:amd64 libgfortran-10-dev 10.2.1-6 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libghc-pandoc-citeproc-data libghc-pandoc-citeproc-data 0.17.0.1-1 install ok installed libgif7:amd64 libgif7 5.1.9-2 install ok installed libgirepository-1.0-1:amd64 libgirepository-1.0-1 1.66.1-1+b1 install ok installed libgit2-1.1:amd64 libgit2-1.1 1.1.0+dfsg.1-4+deb11u1 install ok installed libgl1:amd64 libgl1 1.3.2-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 20.3.5-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 20.3.5-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u1 install ok installed libglib2.0-data libglib2.0-data 2.66.8-1+deb11u1 install ok installed libglvnd0:amd64 libglvnd0 1.3.2-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 20.3.5-1 install ok installed libglx0:amd64 libglx0 1.3.2-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgpm2:amd64 libgpm2 1.20.7-8 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgs9:amd64 libgs9 9.53.3~dfsg-7+deb11u6 install ok installed libgs9-common libgs9-common 9.53.3~dfsg-7+deb11u6 install ok installed libgsl25:amd64 libgsl25 2.6+dfsg-2 install ok installed libgslcblas0:amd64 libgslcblas0 2.6+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.24.24-4+deb11u3 install ok installed libgtk-3-bin libgtk-3-bin 3.24.24-4+deb11u3 install ok installed libgtk-3-common libgtk-3-common 3.24.24-4+deb11u3 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4+b1 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4+b1 install ok installed libguava-java libguava-java 29.0-6 install ok installed libguice-java libguice-java 4.2.3-2 install ok installed libgvc6 libgvc6 2.42.2-5 install ok installed libgvpr2:amd64 libgvpr2 2.42.2-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhawtjni-runtime-java libhawtjni-runtime-java 1.17-1 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.15-3 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-4+deb11u1 install ok installed libhdf5-cpp-103-1:amd64 libhdf5-cpp-103-1 1.10.6+repack-4+deb11u1 install ok installed libhdf5-dev libhdf5-dev 1.10.6+repack-4+deb11u1 install ok installed libhdf5-fortran-102:amd64 libhdf5-fortran-102 1.10.6+repack-4+deb11u1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.6+repack-4+deb11u1 install ok installed libhdf5-hl-cpp-100:amd64 libhdf5-hl-cpp-100 1.10.6+repack-4+deb11u1 install ok installed libhdf5-hl-fortran-100:amd64 libhdf5-hl-fortran-100 1.10.6+repack-4+deb11u1 install ok installed libheif1:amd64 libheif1 1.11.0-1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhtml-form-perl libhtml-form-perl 6.07-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1.1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.75-1+b1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libhtscodecs2:amd64 libhtscodecs2 0.5-3 install ok installed libhtsjdk-java libhtsjdk-java 2.23.0+dfsg-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.12-1+deb11u1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.28-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhttp-parser2.9:amd64 libhttp-parser2.9 2.9.4-4+deb11u1 install ok installed libhttpclient-java libhttpclient-java 4.5.13-2 install ok installed libhttpcore-java libhttpcore-java 4.4.14-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.4.1+dfsg-1 install ok installed libhwloc15:amd64 libhwloc15 2.4.1+dfsg-1 install ok installed libibverbs1:amd64 libibverbs1 33.2-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu-dev:amd64 libicu-dev 67.1-7 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn11:amd64 libidn11 1.33-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-15 install ok installed libilmbase25:amd64 libilmbase25 2.5.4-1 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.069-1 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libip4tc2:amd64 libip4tc2 1.8.7-1 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-1 install ok installed libisl23:amd64 libisl23 0.23-1 install ok installed libistack-commons-java libistack-commons-java 3.0.6-5 install ok installed libitm1:amd64 libitm1 10.2.1-6 install ok installed libjansi-java libjansi-java 1.18-1 install ok installed libjansi-native-java libjansi-native-java 1.8-1 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-10 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.19-2 install ok installed libjbzip2-java libjbzip2-java 0.9.1-5 install ok installed libjemalloc2:amd64 libjemalloc2 5.2.1-3 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:2.0.6-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:2.0.6-4 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-d3-format libjs-d3-format 1:1.4.1-3 install ok installed libjs-es5-shim libjs-es5-shim 4.5.15-1 install ok installed libjs-filesaver libjs-filesaver 2.0.2+dfsg-3 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-1 install ok installed libjs-inherits libjs-inherits 2.0.4-1 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.21+dfsg-2+deb11u1 install ok installed libjs-jquery-datatables-extensions libjs-jquery-datatables-extensions 0.0+git20150910.28fd64e+dfsg-5 install ok installed libjs-jquery-metadata libjs-jquery-metadata 12-3 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 1:2.31.3+dfsg1-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-8+deb11u2 install ok installed libjs-json libjs-json 0~20190826+~1.0.5-2 install ok installed libjs-lunr libjs-lunr 2.3.8~dfsg-2 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1.1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-4 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 3.4.3-2 install ok installed libjs-sprintf-js libjs-sprintf-js 1.1.2+ds1-2 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-3 install ok installed libjs-util libjs-util 0.10.3-4 install ok installed libjson-c5:amd64 libjson-c5 0.15-2+deb11u1 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.6.2-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.6.2-1 install ok installed libjsoup-java libjsoup-java 1.10.2-2 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libjxr-tools libjxr-tools 1.1-6+b1 install ok installed libjxr0:amd64 libjxr0 1.1-6+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-9 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-9 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-9 install ok installed libkmod2:amd64 libkmod2 28-1 install ok installed libkpathsea6:amd64 libkpathsea6 2020.20200327.54578-7+deb11u1 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed libksba8:amd64 libksba8 1.5.0-3+deb11u2 install ok installed liblab-gamut1:amd64 liblab-gamut1 2.42.2-5 install ok installed liblapack-dev:amd64 liblapack-dev 3.9.0-3+deb11u1 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-9 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-common libldap-common 2.4.57+dfsg-3+deb11u1 install ok installed libllvm11:amd64 libllvm11 1:11.0.1-2 install ok installed liblmdb0:amd64 liblmdb0 0.9.24-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.07-4+b1 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2.1 install ok installed liblsan0:amd64 liblsan0 10.2.1-6 install ok installed libltdl7:amd64 libltdl7 2.4.6-15 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.3-1.1+deb11u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma-dev:amd64 liblzma-dev 5.2.5-2.1~deb11u1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmagic-mgc libmagic-mgc 1:5.39-3+deb11u1 install ok installed libmagic1:amd64 libmagic1 1:5.39-3+deb11u1 install ok installed libmagickcore-6.q16-6:amd64 libmagickcore-6.q16-6 8:6.9.11.60+dfsg-1.3+deb11u2 install ok installed libmagickcore-6.q16-6-extra:amd64 libmagickcore-6.q16-6-extra 8:6.9.11.60+dfsg-1.3+deb11u2 install ok installed libmagickwand-6.q16-6:amd64 libmagickwand-6.q16-6 8:6.9.11.60+dfsg-1.3+deb11u2 install ok installed libmailtools-perl libmailtools-perl 2.21-1 install ok installed libmariadb3:amd64 libmariadb3 1:10.5.23-0+deb11u1 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-parent-java libmaven-parent-java 31-2 install ok installed libmaven-resolver-java libmaven-resolver-java 1.4.2-3 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-3 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.0-1+deb11u1 install ok installed libmaven3-core-java libmaven3-core-java 3.6.3-5 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libminizip1:amd64 libminizip1 1.1-8+deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libmpc3:amd64 libmpc3 1.2.0-1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libncurses-dev:amd64 libncurses-dev 6.2+20201114-2+deb11u2 install ok installed libncurses5-dev:amd64 libncurses5-dev 6.2+20201114-2+deb11u2 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnet-dbus-perl libnet-dbus-perl 1.2.0-1+b1 install ok installed libnet-http-perl libnet-http-perl 6.20-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-3+b1 install ok installed libnetcdf18:amd64 libnetcdf18 1:4.7.4-1 install ok installed libnetpbm10 libnetpbm10 2:10.0-15.4 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libngs-java:amd64 libngs-java 2.10.9-1 install ok installed libngs-sdk-dev:amd64 libngs-sdk-dev 2.10.9-1 install ok installed libngs-sdk2:amd64 libngs-sdk2 2.10.9-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnlopt0:amd64 libnlopt0 2.7.0-4+b2 install ok installed libnode72:amd64 libnode72 12.22.12~dfsg-1~deb11u4 install ok installed libnotify-bin libnotify-bin 0.7.9-3 install ok installed libnotify4:amd64 libnotify4 0.7.9-3 install ok installed libnpth0:amd64 libnpth0 1.6-3 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.29-1 install ok installed libnss-systemd:amd64 libnss-systemd 247.3-7+deb11u4 install ok installed libnss3:amd64 libnss3 2:3.61-1+deb11u3 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1+b1 install ok installed libogdi4.1 libogdi4.1 4.1.0+ds-5 install ok installed libopenexr25:amd64 libopenexr25 2.5.4-2+deb11u1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.4.0-3 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.0-10 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam-systemd:amd64 libpam-systemd 247.3-7+deb11u4 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libpathplan4:amd64 libpathplan4 2.42.2-5 install ok installed libpcg-cpp-dev libpcg-cpp-dev 0.98.1-2 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre16-3:amd64 libpcre16-3 2:8.39-13 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.36-2+deb11u1 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.36-2+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre2-dev:amd64 libpcre2-dev 10.36-2+deb11u1 install ok installed libpcre2-posix2:amd64 libpcre2-posix2 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpcre3-dev:amd64 libpcre3-dev 2:8.39-13 install ok installed libpcre32-3:amd64 libpcre32-3 2:8.39-13 install ok installed libpcrecpp0v5:amd64 libpcrecpp0v5 2:8.39-13 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.1-1 install ok installed libpdfbox-java libpdfbox-java 1:1.8.16-2 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libplexus-archiver-java libplexus-archiver-java 3.6.0-2 install ok installed libplexus-cipher-java libplexus-cipher-java 1.8-2 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.6.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 2.1.0-1 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.26-1 install ok installed libplexus-io-java libplexus-io-java 3.2.0-1.1 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 1.4-4 install ok installed libplexus-utils2-java libplexus-utils2-java 3.3.0-1 install ok installed libpmix2:amd64 libpmix2 4.0.0-4.1+deb11u1 install ok installed libpng-dev:amd64 libpng-dev 1.6.37-3 install ok installed libpng-tools libpng-tools 1.6.37-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpoppler102:amd64 libpoppler102 20.09.0-3.1+deb11u1 install ok installed libpq5:amd64 libpq5 13.13-0+deb11u1 install ok installed libproj19:amd64 libproj19 7.2.1-1 install ok installed libproxy1v5:amd64 libproxy1v5 0.4.17-1 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed libptexenc1:amd64 libptexenc1 2020.20200327.54578-7+deb11u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9:amd64 libpython3.9 3.9.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull8.0:amd64 libqhull8.0 2020.2-3 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed librdmacm1:amd64 librdmacm1 33.2-1 install ok installed libreadline-dev:amd64 libreadline-dev 8.1-1 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3.1 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.8.1-1.1 install ok installed librngom-java librngom-java 2.3.0.1-10 install ok installed librsvg2-2:amd64 librsvg2-2 2.50.3+dfsg-1+deb11u1 install ok installed librsvg2-common:amd64 librsvg2-common 2.50.3+dfsg-1+deb11u1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed librttopo1:amd64 librttopo1 1.1.0-2 install ok installed libruby2.7:amd64 libruby2.7 2.7.4-1+deb11u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-7 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsis-base-java libsis-base-java 18.09~pre1+git20180928.45fbd31+dfsg-3 install ok installed libsis-base-jni libsis-base-jni 18.09~pre1+git20180928.45fbd31+dfsg-3 install ok installed libsis-jhdf5-java libsis-jhdf5-java 19.04.0+dfsg-4 install ok installed libsis-jhdf5-jni libsis-jhdf5-jni 19.04.0+dfsg-4 install ok installed libsisu-inject-java libsisu-inject-java 0.3.4-2 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.4-3 install ok installed libslf4j-java libslf4j-java 1.7.30-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libsnappy-java libsnappy-java 1.1.8.3-1 install ok installed libsnappy-jni libsnappy-jni 1.1.8.3-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.8-1 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.72.0-2 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.72.0-2 install ok installed libspatialite7:amd64 libspatialite7 5.0.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstaden-read14:amd64 libstaden-read14 1.14.13-4 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.2.1-6 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1.1 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.2+dfsg1-2 install ok installed libsynctex2:amd64 libsynctex2 2020.20200327.54578-7+deb11u1 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.11+dfsg-1 install ok installed libteckit0:amd64 libteckit0 2.5.10+ds1-3 install ok installed libtexlua53:amd64 libtexlua53 2020.20200327.54578-7+deb11u1 install ok installed libtexluajit2:amd64 libtexluajit2 2020.20200327.54578-7+deb11u1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-7+b1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2.1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtk8.6:amd64 libtk8.6 8.6.11-2 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 10.2.1-6 install ok installed libtxw2-java libtxw2-java 2.3.0.1-10 install ok installed libubsan1:amd64 libubsan1 10.2.1-6 install ok installed libucx0:amd64 libucx0 1.10.1~rc1+really.1.10.0-1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libudunits2-0 libudunits2-0 2.2.28-3 install ok installed libudunits2-data libudunits2-data 2.2.28-3 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed liburi-perl liburi-perl 5.08-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.4+dfsg-1+deb11u1 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libuv1:amd64 libuv1 1.40.0-2 install ok installed libvte-2.91-0:amd64 libvte-2.91-0 0.62.3-1 install ok installed libvte-2.91-common libvte-2.91-common 0.62.3-1 install ok installed libvulkan1:amd64 libvulkan1 1.2.162.0-1 install ok installed libwagon-http-java libwagon-http-java 3.3.4-1 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.3.4-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.18.0-2~exp1.1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.18.0-2~exp1.1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.18.0-2~exp1.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2.1+deb11u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2.1+deb11u2 install ok installed libwmf0.2-7:amd64 libwmf0.2-7 0.2.8.4-17 install ok installed libwoff1:amd64 libwoff1 1.0.2-1+b1 install ok installed libwww-perl libwww-perl 6.52-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libx11-protocol-perl libx11-protocol-perl 0.56-7.1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.7.2-1+deb11u2 install ok installed libx265-192:amd64 libx265-192 3.4-2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1.1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.14-3 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.14-3 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.14-3 install ok installed libxcb-present0:amd64 libxcb-present0 1.14-3 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.14-3 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.14-3 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.0-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.5-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.3+debian-3+deb11u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.10-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-2 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.0.3-2 install ok installed libxkbfile1:amd64 libxkbfile1 1:1.1.0-1 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml-parser-perl:amd64 libxml-parser-perl 2.46-2 install ok installed libxml-twig-perl libxml-twig-perl 1:3.52-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.141.03-1~deb11u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.34-4+deb11u1 install ok installed libxsom-java libxsom-java 2.3.0.1-10 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxv1:amd64 libxv1 2:1.0.11-1 install ok installed libxxf86dga1:amd64 libxxf86dga1 2:1.1.4-1+b3 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libxz-java libxz-java 1.8-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libz3-4:amd64 libz3-4 4.8.10-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed libzzip-0-13:amd64 libzzip-0-13 0.13.62-3.3+deb11u1 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.10.209-2 install ok installed littler littler 0.3.12-1 install ok installed lmodern lmodern 2.004.5-6.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed make make 4.3-4.1 install ok installed manpages manpages 5.10-1 install ok installed manpages-dev manpages-dev 5.10-1 install ok installed mariadb-common mariadb-common 1:10.5.23-0+deb11u1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mesa-vulkan-drivers:amd64 mesa-vulkan-drivers 20.3.5-1 install ok installed mime-support mime-support 3.66 install ok installed mocha mocha 8.2.1+ds1+~cs29.4.27-3 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed mpi-default-bin mpi-default-bin 1.13 install ok installed multiqc multiqc 1.9+dfsg-3 install ok installed mysql-common mysql-common 5.8+1.0.7 install ok installed ncbi-blast+ ncbi-blast+ 2.11.0+ds-1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-9 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed netbase netbase 6.3 install ok installed netpbm netpbm 2:10.0-15.4 install ok installed node-ansi-colors node-ansi-colors 4.1.1-2 install ok installed node-ansi-regex node-ansi-regex 5.0.1-1~deb11u1 install ok installed node-ansi-styles node-ansi-styles 4.2.1-1 install ok installed node-anymatch node-anymatch 3.1.1+~2.2.2-1 install ok installed node-argparse node-argparse 2.0.1-1 install ok installed node-assert node-assert 1.5.0-1 install ok installed node-async-each node-async-each 1.0.3-1 install ok installed node-balanced-match node-balanced-match 1.0.0-1 install ok installed node-binary-extensions node-binary-extensions 2.2.0-1 install ok installed node-brace-expansion node-brace-expansion 2.0.0-1 install ok installed node-braces node-braces 3.0.2+~3.0.0-1 install ok installed node-browser-stdout node-browser-stdout 1.3.1-2 install ok installed node-camelcase node-camelcase 6.2.0-2 install ok installed node-chalk node-chalk 4.1.0-1 install ok installed node-chokidar node-chokidar 3.4.3-3 install ok installed node-clipboard node-clipboard 2.0.6+ds+~cs7.6.4-1 install ok installed node-cliui node-cliui 4.1.0-2 install ok installed node-clone node-clone 2.1.2-2 install ok installed node-color-convert node-color-convert 1.9.3-1 install ok installed node-color-name node-color-name 1.1.4+~1.1.1-1 install ok installed node-commander node-commander 6.2.1-2 install ok installed node-d3 node-d3 5.16.0-4 install ok installed node-d3-array node-d3-array 1.2.4-3 install ok installed node-d3-axis node-d3-axis 1.0.12-3 install ok installed node-d3-brush node-d3-brush 1.1.5-2 install ok installed node-d3-chord node-d3-chord 1.0.6-3 install ok installed node-d3-collection node-d3-collection 1.0.7-3 install ok installed node-d3-color node-d3-color 1.2.8-2 install ok installed node-d3-contour node-d3-contour 1.3.2-4 install ok installed node-d3-dispatch node-d3-dispatch 1.0.6-2 install ok installed node-d3-drag node-d3-drag 1.2.5-2 install ok installed node-d3-dsv node-d3-dsv 1.1.1-5 install ok installed node-d3-ease node-d3-ease 1.0.5-3 install ok installed node-d3-fetch node-d3-fetch 1.2.0-1 install ok installed node-d3-force node-d3-force 1.2.1-2 install ok installed node-d3-format node-d3-format 1:1.4.1-3 install ok installed node-d3-geo node-d3-geo 1.11.9-4 install ok installed node-d3-hierarchy node-d3-hierarchy 1.1.8-3 install ok installed node-d3-interpolate node-d3-interpolate 1.4.0-2 install ok installed node-d3-path node-d3-path 1.0.9-2 install ok installed node-d3-polygon node-d3-polygon 1.0.5-3 install ok installed node-d3-quadtree node-d3-quadtree 1.0.7-2 install ok installed node-d3-queue node-d3-queue 3.0.7-11 install ok installed node-d3-random node-d3-random 1.1.2-3 install ok installed node-d3-scale node-d3-scale 2.2.2-3 install ok installed node-d3-scale-chromatic node-d3-scale-chromatic 1.5.0-2 install ok installed node-d3-selection node-d3-selection 1.4.0-6 install ok installed node-d3-shape node-d3-shape 1.3.7-2 install ok installed node-d3-time node-d3-time 1.0.11-4 install ok installed node-d3-time-format node-d3-time-format 2.1.3-3 install ok installed node-d3-timer node-d3-timer 1.0.10-1 install ok installed node-d3-transition node-d3-transition 1.3.2-3 install ok installed node-d3-voronoi node-d3-voronoi 1.1.4-3 install ok installed node-d3-zoom node-d3-zoom 1.8.3-2 install ok installed node-dagre-d3-renderer node-dagre-d3-renderer 0.6.4+dfsg-3 install ok installed node-dagre-layout node-dagre-layout 0.8.8+really0.8.5+dfsg-4 install ok installed node-debug node-debug 4.3.1+~cs4.1.5-1 install ok installed node-decamelize node-decamelize 4.0.0-1 install ok installed node-defaults node-defaults 1.0.3-2 install ok installed node-diff node-diff 4.0.2~dfsg-2 install ok installed node-end-of-stream node-end-of-stream 1.4.4-1 install ok installed node-escape-string-regexp node-escape-string-regexp 4.0.0-1 install ok installed node-esprima node-esprima 4.0.1+ds+~4.0.2-2 install ok installed node-execa node-execa 4.1.0+dfsg+~cs19.3.6-5 install ok installed node-fill-range node-fill-range 7.0.1-2 install ok installed node-find-up node-find-up 5.0.0-1 install ok installed node-fs.realpath node-fs.realpath 1.0.0-1.1 install ok installed node-get-caller-file node-get-caller-file 1.0.2-1.1 install ok installed node-get-stream node-get-stream 6.0.0-1 install ok installed node-glob node-glob 7.1.6+~7.1.3-1 install ok installed node-glob-parent node-glob-parent 5.1.1+~5.1.0-2 install ok installed node-graceful-fs node-graceful-fs 4.2.4+repack-1 install ok installed node-graphlibrary node-graphlibrary 2.2.0+really2.1.8+dfsg-3 install ok installed node-growl node-growl 1.10.5-2 install ok installed node-has-flag node-has-flag 4.0.0-1 install ok installed node-he node-he 1.2.0-1 install ok installed node-highlight.js node-highlight.js 9.18.5+dfsg1-1 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-3 install ok installed node-iconv-lite node-iconv-lite 0.5.1-3 install ok installed node-inflight node-inflight 1.0.6-1.1 install ok installed node-inherits node-inherits 2.0.4-1 install ok installed node-invert-kv node-invert-kv 3.0.1-1 install ok installed node-is-binary-path node-is-binary-path 2.1.0-1 install ok installed node-is-buffer node-is-buffer 2.0.5-1 install ok installed node-is-extglob node-is-extglob 2.1.1-1 install ok installed node-is-glob node-is-glob 4.0.1-1 install ok installed node-is-number node-is-number 7.0.0-1.1 install ok installed node-is-plain-obj node-is-plain-obj 3.0.0-1 install ok installed node-is-stream node-is-stream 2.0.0-1 install ok installed node-isexe node-isexe 2.0.0-5 install ok installed node-js-yaml node-js-yaml 3.14.1+dfsg+~3.12.6-2 install ok installed node-kind-of node-kind-of 6.0.3+dfsg-1 install ok installed node-lcid node-lcid 3.1.1-1 install ok installed node-locate-path node-locate-path 6.0.0-1 install ok installed node-lodash node-lodash 4.17.21+dfsg+~cs8.31.173-1 install ok installed node-mem node-mem 1.1.0-1.1 install ok installed node-merge-stream node-merge-stream 2.0.0+~1.1.2-1 install ok installed node-mimic-fn node-mimic-fn 3.1.0-1 install ok installed node-minimatch node-minimatch 3.0.4+~3.0.3-1+deb11u2 install ok installed node-ms node-ms 2.1.3+~cs0.7.31-1 install ok installed node-normalize-path node-normalize-path 3.0.0-2 install ok installed node-normalize.css node-normalize.css 8.0.1-3 install ok installed node-npm-run-path node-npm-run-path 2.0.2-2 install ok installed node-object-assign node-object-assign 4.1.1-3 install ok installed node-once node-once 1.4.0-3 install ok installed node-os-locale node-os-locale 5.0.0-1 install ok installed node-p-limit node-p-limit 3.1.0+~cs2.3.0-1 install ok installed node-p-locate node-p-locate 5.0.0-1 install ok installed node-path-dirname node-path-dirname 1.0.2-1.1 install ok installed node-path-exists node-path-exists 4.0.0-2 install ok installed node-path-is-absolute node-path-is-absolute 2.0.0-1 install ok installed node-pump node-pump 3.0.0-4 install ok installed node-randombytes node-randombytes 2.1.0-1 install ok installed node-readdirp node-readdirp 3.5.0-2 install ok installed node-repeat-string node-repeat-string 1.6.1-1 install ok installed node-require-directory node-require-directory 2.1.1-1.1 install ok installed node-require-main-filename node-require-main-filename 2.0.0-1 install ok installed node-rw node-rw 1.3.3-2 install ok installed node-safe-buffer node-safe-buffer 5.2.1+~cs2.1.2-1 install ok installed node-serialize-javascript node-serialize-javascript 5.0.1-2 install ok installed node-set-blocking node-set-blocking 2.0.0-1.1 install ok installed node-set-immediate-shim node-set-immediate-shim 2.0.0-1 install ok installed node-shebang-command node-shebang-command 1.2.0-1.1 install ok installed node-shebang-regex node-shebang-regex 3.0.0-1 install ok installed node-signal-exit node-signal-exit 3.0.3-1 install ok installed node-sprintf-js node-sprintf-js 1.1.2+ds1-2 install ok installed node-string-width node-string-width 4.2.0-1 install ok installed node-strip-ansi node-strip-ansi 6.0.0-2 install ok installed node-strip-json-comments node-strip-json-comments 3.1.1-1 install ok installed node-supports-color node-supports-color 8.1.0+~7.2.0-1 install ok installed node-to-regex-range node-to-regex-range 5.0.1-2 install ok installed node-util node-util 0.10.3-4 install ok installed node-wcwidth.js node-wcwidth.js 1.0.0-1.1 install ok installed node-which node-which 2.0.2+~cs1.3.2-1 install ok installed node-which-module node-which-module 2.0.0-1 install ok installed node-wide-align node-wide-align 1.1.3-1 install ok installed node-wrap-ansi node-wrap-ansi 4.0.0-2 install ok installed node-wrappy node-wrappy 1.0.2-1.1 install ok installed node-y18n node-y18n 4.0.0-4 install ok installed node-yargs node-yargs 15.3.1+repack-2 install ok installed node-yargs-parser node-yargs-parser 18.1.3+~15.0.0-1 install ok installed nodejs nodejs 12.22.12~dfsg-1~deb11u4 install ok installed nodejs-doc nodejs-doc 12.22.12~dfsg-1~deb11u4 install ok installed notification-daemon notification-daemon 3.20.0-4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-2 install ok installed odbcinst odbcinst 2.3.6-0.1+b1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1+b1 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.22+7-1~deb11u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.22+7-1~deb11u1 install ok installed openmpi-bin openmpi-bin 4.1.0-10 install ok installed openmpi-common openmpi-common 4.1.0-10 install ok installed openssh-client openssh-client 1:8.4p1-5+deb11u3 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed pandoc pandoc 2.9.2.1-1+deb11u1 install ok installed pandoc-citeproc pandoc-citeproc 0.17.0.1-1+b2 install ok installed pandoc-data pandoc-data 2.9.2.1-1+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed patch patch 2.7.6-7 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed pigx-rnaseq pigx-rnaseq 0.0.10+ds-2 install ok installed pigz pigz 2.6-1 install ok installed pinentry-curses pinentry-curses 1.1.0-4 install ok installed pkg-config pkg-config 0.29.2-1 install ok installed poppler-data poppler-data 0.4.10-1 install ok installed preview-latex-style preview-latex-style 12.2-1 install ok installed proj-bin proj-bin 7.2.1-1 install ok installed proj-data proj-data 7.2.1-1 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb11u1 install ok installed python-babel-localedata python-babel-localedata 2.8.0+dfsg.1-7 install ok installed python-biopython-doc python-biopython-doc 1.78+dfsg-4 install ok installed python-matplotlib-data python-matplotlib-data 3.3.4-1 install ok installed python3 python3 3.9.2-3 install ok installed python3-adal python3-adal 1.2.2-1 install ok installed python3-aiohttp python3-aiohttp 3.7.4-1 install ok installed python3-alabaster python3-alabaster 0.7.8-1.1 install ok installed python3-appdirs python3-appdirs 1.4.4-1 install ok installed python3-arcp python3-arcp 0.2.1-3 install ok installed python3-argcomplete python3-argcomplete 1.8.1-1.5 install ok installed python3-async-timeout python3-async-timeout 3.0.1-1.1 install ok installed python3-attr python3-attr 20.3.0-1 install ok installed python3-avro python3-avro 1.10.1+dfsg-1 install ok installed python3-azure python3-azure 20201208+git-6 install ok installed python3-azure-storage python3-azure-storage 20201208+git-6 install ok installed python3-babel python3-babel 2.8.0+dfsg.1-7 install ok installed python3-biopython python3-biopython 1.78+dfsg-4 install ok installed python3-blinker python3-blinker 1.4+dfsg1-0.3 install ok installed python3-boto3 python3-boto3 1.13.14-1 install ok installed python3-botocore python3-botocore 1.20.0+repack-1 install ok installed python3-bs4 python3-bs4 4.9.3-1 install ok installed python3-cachecontrol python3-cachecontrol 0.12.6-1 install ok installed python3-cachetools python3-cachetools 4.2.1-1 install ok installed python3-certifi python3-certifi 2020.6.20-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.14.5-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-click python3-click 7.1.2-1 install ok installed python3-colorama python3-colorama 0.4.4-1 install ok installed python3-coloredlogs python3-coloredlogs 7.3-2 install ok installed python3-colormath python3-colormath 3.0.0-1.1 install ok installed python3-configargparse python3-configargparse 1.2.3-1 install ok installed python3-cryptography python3-cryptography 3.3.2-1 install ok installed python3-cutadapt python3-cutadapt 3.2-2 install ok installed python3-cycler python3-cycler 0.10.0-3 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-1+b1 install ok installed python3-decorator python3-decorator 4.4.2-2 install ok installed python3-deeptools python3-deeptools 3.5.0-1 install ok installed python3-deeptoolsintervals python3-deeptoolsintervals 0.1.9-3+b2 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-dnaio python3-dnaio 0.5.0-1 install ok installed python3-docutils python3-docutils 0.16+dfsg-4 install ok installed python3-dropbox python3-dropbox 10.10.0-1 install ok installed python3-flask python3-flask 1.1.2-2+deb11u1 install ok installed python3-ftputil python3-ftputil 3.4-3 install ok installed python3-future python3-future 0.18.2-5 install ok installed python3-gdal python3-gdal 3.2.2+dfsg-2+deb11u2 install ok installed python3-gi python3-gi 3.38.0-2 install ok installed python3-git python3-git 3.1.14-1 install ok installed python3-gitdb python3-gitdb 4.0.5-1 install ok installed python3-google-auth python3-google-auth 1.5.1-3 install ok installed python3-html5lib python3-html5lib 1.1-3 install ok installed python3-htseq python3-htseq 0.13.5-1 install ok installed python3-humanfriendly python3-humanfriendly 9.1-1 install ok installed python3-idna python3-idna 2.10-1 install ok installed python3-imagesize python3-imagesize 1.2.0-2 install ok installed python3-importlib-metadata python3-importlib-metadata 1.6.0-2 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-4 install ok installed python3-irodsclient python3-irodsclient 0.8.1-2 install ok installed python3-isodate python3-isodate 0.6.0-2 install ok installed python3-itsdangerous python3-itsdangerous 1.1.0-3 install ok installed python3-jinja2 python3-jinja2 2.11.3-1 install ok installed python3-jmespath python3-jmespath 0.10.0-1 install ok installed python3-jsonschema python3-jsonschema 3.2.0-3 install ok installed python3-jupyter-core python3-jupyter-core 4.7.1-1+deb11u1 install ok installed python3-jwt python3-jwt 1.7.1-2 install ok installed python3-kiwisolver python3-kiwisolver 1.3.1-1+b1 install ok installed python3-kubernetes python3-kubernetes 12.0.1-1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2.2 install ok installed python3-lxml:amd64 python3-lxml 4.6.3+dfsg-0.1+deb11u1 install ok installed python3-lzstring python3-lzstring 1.0.4-1.1 install ok installed python3-markdown python3-markdown 3.3.4-1 install ok installed python3-markupsafe python3-markupsafe 1.1.1-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.3.4-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-mistune python3-mistune 0.8.4-4 install ok installed python3-more-itertools python3-more-itertools 4.2.0-3 install ok installed python3-msal python3-msal 1.9.0-1 install ok installed python3-msal-extensions python3-msal-extensions 0.3.0-1 install ok installed python3-msgpack python3-msgpack 1.0.0-6+b1 install ok installed python3-msrest python3-msrest 0.6.21-1 install ok installed python3-msrestazure python3-msrestazure 0.6.2-1 install ok installed python3-multidict python3-multidict 5.1.0-1 install ok installed python3-mypy-extensions python3-mypy-extensions 0.4.3-2 install ok installed python3-nbformat python3-nbformat 5.1.2-1 install ok installed python3-networkx python3-networkx 2.5+ds-2 install ok installed python3-numpy python3-numpy 1:1.19.5-1 install ok installed python3-numpydoc python3-numpydoc 1.1.0-3 install ok installed python3-oauthlib python3-oauthlib 3.1.0-2 install ok installed python3-olefile python3-olefile 0.46-3 install ok installed python3-openssl python3-openssl 20.0.1-1 install ok installed python3-packaging python3-packaging 20.9-2 install ok installed python3-pil:amd64 python3-pil 8.1.2+dfsg-0.3+deb11u1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-plotly python3-plotly 4.14.3+dfsg-1 install ok installed python3-portalocker python3-portalocker 2.2.1-1 install ok installed python3-prettytable python3-prettytable 0.7.2-5 install ok installed python3-prov python3-prov 1.5.2-2 install ok installed python3-psutil python3-psutil 5.8.0-1 install ok installed python3-pulp python3-pulp 1.6.0+dfsg1-5 install ok installed python3-py2bit python3-py2bit 0.3.0-6+b1 install ok installed python3-pyasn1 python3-pyasn1 0.4.8-1 install ok installed python3-pyasn1-modules python3-pyasn1-modules 0.2.1-1 install ok installed python3-pybigwig python3-pybigwig 0.3.17-1+b4 install ok installed python3-pydot python3-pydot 1.4.2-1 install ok installed python3-pygments python3-pygments 2.7.1+dfsg-2.1 install ok installed python3-pygraphviz python3-pygraphviz 1.7-2 install ok installed python3-pyinotify python3-pyinotify 0.9.6-1.3 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.15.5-1+b3 install ok installed python3-pysam python3-pysam 0.15.4+ds-3+b2 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-1 install ok installed python3-rdflib python3-rdflib 5.0.0-1.1 install ok installed python3-rdflib-jsonld python3-rdflib-jsonld 0.5.0-1 install ok installed python3-renderpm:amd64 python3-renderpm 3.5.59-2 install ok installed python3-reportlab python3-reportlab 3.5.59-2 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.59-2 install ok installed python3-requests python3-requests 2.25.1+dfsg-2 install ok installed python3-requests-oauthlib python3-requests-oauthlib 1.0.0-1.1 install ok installed python3-retrying python3-retrying 1.3.3-4 install ok installed python3-roman python3-roman 2.0.0-5 install ok installed python3-rsa python3-rsa 4.0-4 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.16.12-2 install ok installed python3-ruamel.yaml.clib:amd64 python3-ruamel.yaml.clib 0.2.2-1+b2 install ok installed python3-s3transfer python3-s3transfer 0.3.4-1 install ok installed python3-schema-salad python3-schema-salad 7.0.20210124093443-1 install ok installed python3-scipy python3-scipy 1.6.0-2 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-shellescape python3-shellescape 3.4.1-4 install ok installed python3-simplejson python3-simplejson 3.17.2-1 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-smmap python3-smmap 4.0.0-1 install ok installed python3-snowballstemmer python3-snowballstemmer 2.1.0-1 install ok installed python3-soupsieve python3-soupsieve 2.2.1-1 install ok installed python3-sparqlwrapper python3-sparqlwrapper 1.8.5-1 install ok installed python3-spectra python3-spectra 0.0.11-2 install ok installed python3-sphinx python3-sphinx 3.4.3-2 install ok installed python3-tk:amd64 python3-tk 3.9.2-1 install ok installed python3-toposort python3-toposort 1.6-1 install ok installed python3-traitlets python3-traitlets 5.0.5-1 install ok installed python3-typing-extensions python3-typing-extensions 3.7.4.3-1 install ok installed python3-tz python3-tz 2021.1-1 install ok installed python3-uamqp python3-uamqp 1.2.13-1 install ok installed python3-urllib3 python3-urllib3 1.26.5-1~exp1 install ok installed python3-webencodings python3-webencodings 0.5.1-2 install ok installed python3-websocket python3-websocket 0.57.0-1 install ok installed python3-werkzeug python3-werkzeug 1.0.1+dfsg1-2+deb11u1 install ok installed python3-wrapt python3-wrapt 1.12.1-4+b1 install ok installed python3-xopen python3-xopen 1.1.0-1 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3-yappi python3-yappi 1.0-1+b5 install ok installed python3-yarl python3-yarl 1.6.3-2 install ok installed python3-zipp python3-zipp 1.0.0-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed r-base-core r-base-core 4.0.4-1 install ok installed r-base-dev r-base-dev 4.0.4-1 install ok installed r-bioc-annotate r-bioc-annotate 1.68.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.52.0-1 install ok installed r-bioc-beachmat r-bioc-beachmat 2.6.4+ds-1 install ok installed r-bioc-biobase r-bioc-biobase 2.50.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.36.0-1 install ok installed r-bioc-biocneighbors r-bioc-biocneighbors 1.8.2+ds-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.24.1-1 install ok installed r-bioc-biocsingular r-bioc-biocsingular 1.6.0+ds-1 install ok installed r-bioc-biocstyle r-bioc-biocstyle 2.18.1+dfsg-3 install ok installed r-bioc-biocviews r-bioc-biocviews 1.58.1-2 install ok installed r-bioc-biostrings r-bioc-biostrings 2.58.0-1 install ok installed r-bioc-bluster r-bioc-bluster 1.0.0+dfsg-2 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.16.1+dfsg-1 install ok installed r-bioc-delayedmatrixstats r-bioc-delayedmatrixstats 1.12.3+ds-1 install ok installed r-bioc-deseq2 r-bioc-deseq2 1.30.1+dfsg-1 install ok installed r-bioc-edger r-bioc-edger 3.32.1+dfsg-1 install ok installed r-bioc-genefilter r-bioc-genefilter 1.72.1-1 install ok installed r-bioc-geneplotter r-bioc-geneplotter 1.68.0-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.26.2-2 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.4-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.26.0-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.42.0+dfsg-1 install ok installed r-bioc-glmgampoi r-bioc-glmgampoi 1.2.0+dfsg-6 install ok installed r-bioc-go.db r-bioc-go.db 3.12.1-1 install ok installed r-bioc-graph r-bioc-graph 1.68.0-1 install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.18.1-3 install ok installed r-bioc-hsmmsinglecell r-bioc-hsmmsinglecell 1.10.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.24.1-1 install ok installed r-bioc-limma r-bioc-limma 3.46.0+dfsg-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.2.1-4 install ok installed r-bioc-monocle r-bioc-monocle 2.18.0-1 install ok installed r-bioc-org.hs.eg.db r-bioc-org.hs.eg.db 3.12.0-1 install ok installed r-bioc-rbgl r-bioc-rbgl 1.66.0+dfsg-1 install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.34.0+dfsg-1 install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.2.0+dfsg2-1 install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 1.12.1+dfsg-3+b1 install ok installed r-bioc-rhtslib r-bioc-rhtslib 1.22.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.6.0-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.50.0-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.28.1-1 install ok installed r-bioc-scran r-bioc-scran 1.18.5+dfsg-1 install ok installed r-bioc-scuttle r-bioc-scuttle 1.0.4+dfsg-5 install ok installed r-bioc-shortread r-bioc-shortread 1.48.0-2 install ok installed r-bioc-singlecellexperiment r-bioc-singlecellexperiment 1.12.0+ds-1 install ok installed r-bioc-sparsematrixstats r-bioc-sparsematrixstats 1.2.1+dfsg-4 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.20.0+dfsg-1 install ok installed r-bioc-tximport r-bioc-tximport 1.18.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.30.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.36.0+dfsg-1 install ok installed r-cran-abind r-cran-abind 1.4-5-2 install ok installed r-cran-askpass r-cran-askpass 1.1-2 install ok installed r-cran-assertthat r-cran-assertthat 0.2.1-2 install ok installed r-cran-backports r-cran-backports 1.2.1-1 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-base64url r-cran-base64url 1.4-2+b1 install ok installed r-cran-batchjobs r-cran-batchjobs 1.8-2 install ok installed r-cran-batchtools r-cran-batchtools 0.9.15+dfsg-1 install ok installed r-cran-bbmisc r-cran-bbmisc 1.11-4 install ok installed r-cran-bh r-cran-bh 1.74.0-1 install ok installed r-cran-biocmanager r-cran-biocmanager 1.30.10+dfsg-2 install ok installed r-cran-bit r-cran-bit 4.0.4+dfsg-1 install ok installed r-cran-bit64 r-cran-bit64 4.0.5-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-5 install ok installed r-cran-blob r-cran-blob 1.2.1-2 install ok installed r-cran-bookdown r-cran-bookdown 0.21+dfsg-1 install ok installed r-cran-boot r-cran-boot 1.3-27-1 install ok installed r-cran-brew r-cran-brew 1.0-6-4 install ok installed r-cran-brio r-cran-brio 1.1.1-1 install ok installed r-cran-broom r-cran-broom 0.7.4+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.0.3-1 install ok installed r-cran-callr r-cran-callr 3.5.1-1 install ok installed r-cran-caret r-cran-caret 6.0-86+dfsg-1+b1 install ok installed r-cran-catools r-cran-catools 1.18.1-1 install ok installed r-cran-cba r-cran-cba 0.2-21-2 install ok installed r-cran-checkmate r-cran-checkmate 2.0.0-1+b1 install ok installed r-cran-class r-cran-class 7.3-18-1 install ok installed r-cran-classint r-cran-classint 0.4-3-1+b1 install ok installed r-cran-cli r-cran-cli 2.3.0-1 install ok installed r-cran-cliapp r-cran-cliapp 0.1.1-1 install ok installed r-cran-clipr r-cran-clipr 0.7.1-1 install ok installed r-cran-cluster r-cran-cluster 2.1.1-1 install ok installed r-cran-codetools r-cran-codetools 0.2-18-1 install ok installed r-cran-colorspace r-cran-colorspace 2.0-0+dfsg-1 install ok installed r-cran-colourpicker r-cran-colourpicker 1.1.0+dfsg-1 install ok installed r-cran-combinat r-cran-combinat 0.0-8-7 install ok installed r-cran-commonmark r-cran-commonmark 1.7-2 install ok installed r-cran-conquer r-cran-conquer 1.0.2-1 install ok installed r-cran-corrplot r-cran-corrplot 0.84-3 install ok installed r-cran-covr r-cran-covr 3.5.1+dfsg-2 install ok installed r-cran-cpp11 r-cran-cpp11 0.2.6-1 install ok installed r-cran-crayon r-cran-crayon 1.4.0-1 install ok installed r-cran-credentials r-cran-credentials 1.3.0-2 install ok installed r-cran-crosstalk r-cran-crosstalk 1.1.1+dfsg-2 install ok installed r-cran-curl r-cran-curl 4.3+dfsg-1+b1 install ok installed r-cran-cvst r-cran-cvst 0.2-2-3 install ok installed r-cran-data.table r-cran-data.table 1.13.6+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.1.1-1 install ok installed r-cran-dbitest r-cran-dbitest 1.7.0-2 install ok installed r-cran-dbplyr r-cran-dbplyr 2.1.0-1 install ok installed r-cran-ddalpha r-cran-ddalpha 1.3.11-1+b1 install ok installed r-cran-ddrtree r-cran-ddrtree 0.1.5-2 install ok installed r-cran-decor r-cran-decor 1.0.0-2 install ok installed r-cran-deldir r-cran-deldir 0.2-9-1 install ok installed r-cran-densityclust r-cran-densityclust 0.3-2 install ok installed r-cran-deoptimr r-cran-deoptimr 1.0-8-1+b3 install ok installed r-cran-desc r-cran-desc 1.2.0-3 install ok installed r-cran-devtools r-cran-devtools 2.3.2-1 install ok installed r-cran-diffobj r-cran-diffobj 0.3.2-1 install ok installed r-cran-digest r-cran-digest 0.6.27-1 install ok installed r-cran-dimred r-cran-dimred 0.2.3-2 install ok installed r-cran-docopt r-cran-docopt 0.7.1-2 install ok installed r-cran-domc r-cran-domc 1.3.7-1 install ok installed r-cran-doparallel r-cran-doparallel 1.0.16-1 install ok installed r-cran-dplyr r-cran-dplyr 1.0.4-1 install ok installed r-cran-dqrng r-cran-dqrng 0.2.1+dfsg-4+b1 install ok installed r-cran-drr r-cran-drr 0.0.4-2 install ok installed r-cran-dt r-cran-dt 0.17+dfsg-3 install ok installed r-cran-dygraphs r-cran-dygraphs 1.1.1.6+dfsg-2 install ok installed r-cran-dynamictreecut r-cran-dynamictreecut 1.63-1-3 install ok installed r-cran-e1071 r-cran-e1071 1.7-4-1 install ok installed r-cran-earth r-cran-earth 5.3.0-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.1-1 install ok installed r-cran-evaluate r-cran-evaluate 0.14-2 install ok installed r-cran-fansi r-cran-fansi 0.4.2-1 install ok installed r-cran-farver r-cran-farver 2.0.3-1+b1 install ok installed r-cran-fastica r-cran-fastica 1.2-2-2+b1 install ok installed r-cran-fastmap r-cran-fastmap 1.1.0-1 install ok installed r-cran-fastmatch r-cran-fastmatch 1.1-0-3 install ok installed r-cran-filehash r-cran-filehash 2.4-2-3 install ok installed r-cran-fnn r-cran-fnn 1.1.3-2 install ok installed r-cran-fontbitstreamvera r-cran-fontbitstreamvera 0.1.1+dfsg-4 install ok installed r-cran-fontliberation r-cran-fontliberation 0.1.0+dfsg-4 install ok installed r-cran-fontquiver r-cran-fontquiver 0.2.1-3 install ok installed r-cran-foreach r-cran-foreach 1.5.1-1 install ok installed r-cran-foreign r-cran-foreign 0.8.81-1 install ok installed r-cran-formatr r-cran-formatr 1.7-2 install ok installed r-cran-formula r-cran-formula 1.2-4-1 install ok installed r-cran-freetypeharfbuzz r-cran-freetypeharfbuzz 0.2.6+dfsg-1 install ok installed r-cran-fs r-cran-fs 1.5.0+dfsg-1 install ok installed r-cran-fts r-cran-fts 0.9.9.2-2 install ok installed r-cran-furrr r-cran-furrr 0.2.2-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-future r-cran-future 1.21.0+dfsg-1 install ok installed r-cran-gdata r-cran-gdata 2.18.0-3 install ok installed r-cran-gdtools r-cran-gdtools 0.2.3-1 install ok installed r-cran-generics r-cran-generics 0.1.0-1 install ok installed r-cran-geometry r-cran-geometry 0.4.5-1+b1 install ok installed r-cran-geosphere r-cran-geosphere 1.5-10-2 install ok installed r-cran-gert r-cran-gert 1.1.0-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.3.3+dfsg-1 install ok installed r-cran-ggrepel r-cran-ggrepel 0.9.1-1 install ok installed r-cran-ggthemes r-cran-ggthemes 4.2.4-1 install ok installed r-cran-gh r-cran-gh 1.2.0-1 install ok installed r-cran-gitcreds r-cran-gitcreds 0.1.1-2 install ok installed r-cran-globals r-cran-globals 0.14.0-1 install ok installed r-cran-glue r-cran-glue 1.4.2-1 install ok installed r-cran-goftest r-cran-goftest 1.2-2-1+b1 install ok installed r-cran-gower r-cran-gower 0.2.2-1 install ok installed r-cran-gplots r-cran-gplots 3.1.1-1 install ok installed r-cran-gprofiler r-cran-gprofiler 0.7.0-2 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gsl r-cran-gsl 2.1-6-2 install ok installed r-cran-gtable r-cran-gtable 0.3.0+dfsg-2 install ok installed r-cran-gtools r-cran-gtools 3.8.2-1+b1 install ok installed r-cran-hexbin r-cran-hexbin 1.28.2-1 install ok installed r-cran-highr r-cran-highr 0.8+dfsg-2 install ok installed r-cran-hms r-cran-hms 1.0.0-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.1.1-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.5.3+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.5.5+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.2-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2-4 install ok installed r-cran-igraph r-cran-igraph 1.2.6-1 install ok installed r-cran-ini r-cran-ini 0.3.1-2 install ok installed r-cran-ipred r-cran-ipred 0.9-9-2 install ok installed r-cran-irlba r-cran-irlba 2.3.3-2 install ok installed r-cran-isoband r-cran-isoband 0.2.3-2 install ok installed r-cran-iterators r-cran-iterators 1.0.13-1 install ok installed r-cran-jpeg r-cran-jpeg 0.1-8.1-1+b1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.7.2+dfsg-1 install ok installed r-cran-kernlab r-cran-kernlab 0.9-29-1+b1 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-18-1 install ok installed r-cran-knitr r-cran-knitr 1.31+dfsg-1 install ok installed r-cran-ks r-cran-ks 1.11.7-1+b1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-later r-cran-later 1.1.0.1+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.20-41-1+b1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-29-3 install ok installed r-cran-lava r-cran-lava 1.6.8.1-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.2-1+b1 install ok installed r-cran-lifecycle r-cran-lifecycle 0.2.0-2 install ok installed r-cran-linprog r-cran-linprog 0.9-2-2 install ok installed r-cran-listenv r-cran-listenv 0.8.0+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.12-1 install ok installed r-cran-lme4 r-cran-lme4 1.1-26-1 install ok installed r-cran-locfit r-cran-locfit 1.5-9.4-2+b1 install ok installed r-cran-logcondens r-cran-logcondens 2.1.5-3 install ok installed r-cran-lpsolve r-cran-lpsolve 5.6.15-1+b1 install ok installed r-cran-lubridate r-cran-lubridate 1.7.9.2+dfsg-1 install ok installed r-cran-lwgeom r-cran-lwgeom 0.2-5-2 install ok installed r-cran-magic r-cran-magic 1.5-9-2 install ok installed r-cran-magrittr r-cran-magrittr 2.0.1-1 install ok installed r-cran-mapproj r-cran-mapproj 1.2.7-1+b1 install ok installed r-cran-maps r-cran-maps 3.3.0-3 install ok installed r-cran-maptools r-cran-maptools 1:1.0-2+dfsg-1 install ok installed r-cran-markdown r-cran-markdown 1.1+dfsg-1+b1 install ok installed r-cran-mass r-cran-mass 7.3-53.1-1 install ok installed r-cran-matrix r-cran-matrix 1.3-2-1 install ok installed r-cran-matrixmodels r-cran-matrixmodels 0.4-1-3 install ok installed r-cran-matrixstats r-cran-matrixstats 0.58.0-3 install ok installed r-cran-mclust r-cran-mclust 5.4.7-1 install ok installed r-cran-mda r-cran-mda 0.5-2-1 install ok installed r-cran-memoise r-cran-memoise 2.0.0-1 install ok installed r-cran-mets r-cran-mets 1.2.8.1+dfsg-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-34-1 install ok installed r-cran-mime r-cran-mime 0.9-1+b1 install ok installed r-cran-miniui r-cran-miniui 0.1.1.1-3 install ok installed r-cran-minqa r-cran-minqa 1.2.4-1+b5 install ok installed r-cran-mlbench r-cran-mlbench 2.1-3-1 install ok installed r-cran-mlmetrics r-cran-mlmetrics 1.1.1-3 install ok installed r-cran-mockery r-cran-mockery 0.4.2+dfsg-2 install ok installed r-cran-mockr r-cran-mockr 0.1-3 install ok installed r-cran-modeldata r-cran-modeldata 0.1.0-1 install ok installed r-cran-modelmetrics r-cran-modelmetrics 1.2.2.2-1+b1 install ok installed r-cran-multicool r-cran-multicool 0.1-11-2+b1 install ok installed r-cran-multicore r-cran-multicore 0.2-1+b3 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-mvtnorm r-cran-mvtnorm 1.1-1-1 install ok installed r-cran-nlme r-cran-nlme 3.1.152-1 install ok installed r-cran-nloptr r-cran-nloptr 1.2.2.2-1 install ok installed r-cran-nnet r-cran-nnet 7.3-15-1 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1.1-3 install ok installed r-cran-openssl r-cran-openssl 1.4.3+dfsg-2 install ok installed r-cran-parallelly r-cran-parallelly 1.23.0-1 install ok installed r-cran-pheatmap r-cran-pheatmap 1.0.12-2 install ok installed r-cran-pillar r-cran-pillar 1.4.7-1 install ok installed r-cran-pkgbuild r-cran-pkgbuild 1.2.0-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.1-1 install ok installed r-cran-pkgload r-cran-pkgload 1.1.0-1 install ok installed r-cran-plogr r-cran-plogr 0.2.0-3 install ok installed r-cran-plotly r-cran-plotly 4.9.3+dfsg-2 install ok installed r-cran-plotmo r-cran-plotmo 3.6.0-1 install ok installed r-cran-plotrix r-cran-plotrix 3.8-1-1 install ok installed r-cran-pls r-cran-pls 2.7-3-1 install ok installed r-cran-plyr r-cran-plyr 1.8.6-2 install ok installed r-cran-png r-cran-png 0.1-7-4 install ok installed r-cran-polyclip r-cran-polyclip 1.10-0-2 install ok installed r-cran-praise r-cran-praise 1.0.0-4 install ok installed r-cran-prettycode r-cran-prettycode 1.1.0-2 install ok installed r-cran-prettyunits r-cran-prettyunits 1.1.1-2 install ok installed r-cran-proc r-cran-proc 1.17.0.1-1 install ok installed r-cran-processx r-cran-processx 3.4.5-1 install ok installed r-cran-prodlim r-cran-prodlim 2019.11.13-1+b1 install ok installed r-cran-progress r-cran-progress 1.2.2-2 install ok installed r-cran-promises r-cran-promises 1.1.1+dfsg-1 install ok installed r-cran-proxy r-cran-proxy 0.4-24-2 install ok installed r-cran-ps r-cran-ps 1.5.0-1 install ok installed r-cran-purrr r-cran-purrr 0.3.4-1+b1 install ok installed r-cran-qlcmatrix r-cran-qlcmatrix 0.9.7-2 install ok installed r-cran-quadprog r-cran-quadprog 1.5-8-1+b1 install ok installed r-cran-quantmod r-cran-quantmod 0.4.18-1 install ok installed r-cran-quantreg r-cran-quantreg 5.85-1 install ok installed r-cran-r.methodss3 r-cran-r.methodss3 1.8.1-1 install ok installed r-cran-r.oo r-cran-r.oo 1.24.0-1 install ok installed r-cran-r6 r-cran-r6 2.5.0-1 install ok installed r-cran-randomfields r-cran-randomfields 3.3.8-1+b1 install ok installed r-cran-randomfieldsutils r-cran-randomfieldsutils 0.5.3-2 install ok installed r-cran-ranger r-cran-ranger 0.12.1-3+b1 install ok installed r-cran-rann r-cran-rann 2.6.1-1+b2 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1 install ok installed r-cran-raster r-cran-raster 3.4-5-1 install ok installed r-cran-rcmdcheck r-cran-rcmdcheck 1.3.3-2 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-3 install ok installed r-cran-rcpp r-cran-rcpp 1.0.6-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 0.10.2.1.0-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.3.9.1-1 install ok installed r-cran-rcpphnsw r-cran-rcpphnsw 0.3.0.9001+ds-1+b1 install ok installed r-cran-rcppprogress r-cran-rcppprogress 0.4.2-2 install ok installed r-cran-rcpproll r-cran-rcpproll 0.3.0-2 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.2-1+b1 install ok installed r-cran-recipes r-cran-recipes 0.1.15+dfsg-1 install ok installed r-cran-rematch2 r-cran-rematch2 2.1.2-2 install ok installed r-cran-remotes r-cran-remotes 2.2.0-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rex r-cran-rex 1.2.0-2 install ok installed r-cran-rgdal r-cran-rgdal 1.5-21+dfsg-1 install ok installed r-cran-rjson r-cran-rjson 0.2.20-2 install ok installed r-cran-rlang r-cran-rlang 0.4.10-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.6+dfsg-1 install ok installed r-cran-rmpi r-cran-rmpi 0.6-9-1+b2 install ok installed r-cran-rmysql r-cran-rmysql 0.10.21-1 install ok installed r-cran-robustbase r-cran-robustbase 0.93-7-1 install ok installed r-cran-rocr r-cran-rocr 1.0-11-2 install ok installed r-cran-roxygen2 r-cran-roxygen2 7.1.1-1 install ok installed r-cran-rpart r-cran-rpart 4.1-15-2+b1 install ok installed r-cran-rpostgresql r-cran-rpostgresql 0.6-2+dfsg-3 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.2-1 install ok installed r-cran-rsample r-cran-rsample 0.0.8-1 install ok installed r-cran-rsclient r-cran-rsclient 0.7-3-2+b4 install ok installed r-cran-rspectra r-cran-rspectra 0.16-0-1+b1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.2.3-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.13-1 install ok installed r-cran-rsvd r-cran-rsvd 1.0.3-3 install ok installed r-cran-rtsne r-cran-rtsne 0.15-2+b1 install ok installed r-cran-runit r-cran-runit 0.4.32-3 install ok installed r-cran-rversions r-cran-rversions 2.0.2-1 install ok installed r-cran-scales r-cran-scales 1.1.1-1 install ok installed r-cran-selectr r-cran-selectr 0.4-2-2 install ok installed r-cran-sendmailr r-cran-sendmailr 1.2-1-5 install ok installed r-cran-sessioninfo r-cran-sessioninfo 1.1.1-4 install ok installed r-cran-setrng r-cran-setrng 2013.9-1-3 install ok installed r-cran-sf r-cran-sf 0.9-7+dfsg-5 install ok installed r-cran-sfsmisc r-cran-sfsmisc 1.1-8-1 install ok installed r-cran-shiny r-cran-shiny 1.5.0+dfsg-2 install ok installed r-cran-shinyjs r-cran-shinyjs 2.0.0-1 install ok installed r-cran-sitmo r-cran-sitmo 2.0.1-2+b1 install ok installed r-cran-slam r-cran-slam 0.1-48-1 install ok installed r-cran-slider r-cran-slider 0.1.5-2 install ok installed r-cran-snow r-cran-snow 1:0.4.3-2 install ok installed r-cran-sodium r-cran-sodium 1.1-1+b2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-3 install ok installed r-cran-sp r-cran-sp 1:1.4-5-1 install ok installed r-cran-sparsem r-cran-sparsem 1.81-1 install ok installed r-cran-sparsesvd r-cran-sparsesvd 0.2-2 install ok installed r-cran-spatial r-cran-spatial 7.3-13-1 install ok installed r-cran-spatstat r-cran-spatstat 1.64-1-1 install ok installed r-cran-spatstat.data r-cran-spatstat.data 1.7-0-1 install ok installed r-cran-spatstat.utils r-cran-spatstat.utils 2.0-0-1 install ok installed r-cran-squarem r-cran-squarem 2021.1-1 install ok installed r-cran-statmod r-cran-statmod 1.4.35-1 install ok installed r-cran-stringi r-cran-stringi 1.5.3-1 install ok installed r-cran-stringr r-cran-stringr 1.4.0-2 install ok installed r-cran-survival r-cran-survival 3.2-7-1 install ok installed r-cran-sys r-cran-sys 3.4-1 install ok installed r-cran-systemfonts r-cran-systemfonts 1.0.0-1 install ok installed r-cran-teachingdemos r-cran-teachingdemos 2.12-2 install ok installed r-cran-tensor r-cran-tensor 1.5-4 install ok installed r-cran-testit r-cran-testit 0.12-1 install ok installed r-cran-testthat r-cran-testthat 3.0.1-1 install ok installed r-cran-tibble r-cran-tibble 3.0.6+dfsg-1 install ok installed r-cran-tidyr r-cran-tidyr 1.1.2-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.1.0+dfsg-1 install ok installed r-cran-tikzdevice r-cran-tikzdevice 0.12.3.1-1 install ok installed r-cran-timedate r-cran-timedate 3043.102-1+b2 install ok installed r-cran-timereg r-cran-timereg 1.9.8-1 install ok installed r-cran-timeseries r-cran-timeseries 3062.100-2 install ok installed r-cran-tinytex r-cran-tinytex 0.29-1 install ok installed r-cran-tseries r-cran-tseries 0.10-48-1 install ok installed r-cran-ttr r-cran-ttr 0.24.2-1 install ok installed r-cran-units r-cran-units 0.6-7-1 install ok installed r-cran-usethis r-cran-usethis 2.0.0-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-2 install ok installed r-cran-vctrs r-cran-vctrs 0.3.6-1 install ok installed r-cran-vdiffr r-cran-vdiffr 0.3.3+dfsg-1 install ok installed r-cran-vgam r-cran-vgam 1.1-5-1 install ok installed r-cran-viridis r-cran-viridis 0.5.1-3 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-4 install ok installed r-cran-waldo r-cran-waldo 0.2.3-2 install ok installed r-cran-warp r-cran-warp 0.2.0-1 install ok installed r-cran-webutils r-cran-webutils 1.1-1+b1 install ok installed r-cran-whisker r-cran-whisker 0.4-2 install ok installed r-cran-withr r-cran-withr 2.4.1-1 install ok installed r-cran-xfun r-cran-xfun 0.20-1 install ok installed r-cran-xml r-cran-xml 3.99-0.5-1 install ok installed r-cran-xml2 r-cran-xml2 1.3.2-1+b1 install ok installed r-cran-xopen r-cran-xopen 1.0.0-2 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed r-cran-xts r-cran-xts 0.12.1-1 install ok installed r-cran-yaml r-cran-yaml 2.2.1-1+b1 install ok installed r-cran-zip r-cran-zip 2.1.1-1 install ok installed r-cran-zoo r-cran-zoo 1.8-8-1+b1 install ok installed r-doc-html r-doc-html 4.0.4-1 install ok installed r-recommended r-recommended 4.0.4-1 install ok installed rake rake 13.0.3-1 install ok installed readline-common readline-common 8.1-1 install ok installed rna-star rna-star 2.7.8a+dfsg-2 install ok installed ruby ruby 1:2.7+2 install ok installed ruby-minitest ruby-minitest 5.13.0-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.7-2 install ok installed ruby-rubygems ruby-rubygems 3.2.5-2 install ok installed ruby-test-unit ruby-test-unit 3.3.9-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.7 ruby2.7 2.7.4-1+deb11u1 install ok installed rubygems-integration rubygems-integration 1.18 install ok installed salmon salmon 1.4.0+ds1-1+b4 install ok installed samtools samtools 1.11-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sgml-base sgml-base 1.30 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed snakemake snakemake 5.24.1-2 install ok installed sphinx-common sphinx-common 3.4.3-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.5.1+dfsg-1 install ok installed systemd systemd 247.3-7+deb11u4 install ok installed systemd-sysv systemd-sysv 247.3-7+deb11u4 install ok installed systemd-timesyncd systemd-timesyncd 247.3-7+deb11u4 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed t1utils t1utils 1.41-4 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tcl tcl 8.6.11+1 install ok installed tcl8.6 tcl8.6 8.6.11+dfsg-1 install ok installed teckit teckit 2.5.10+ds1-3 install ok installed termit termit 3.1-1 install ok installed tex-common tex-common 6.16 install ok installed tex-gyre tex-gyre 20180621-3.1 install ok installed texlive-base texlive-base 2020.20210202-3 install ok installed texlive-bibtex-extra texlive-bibtex-extra 2020.20210202-3 install ok installed texlive-binaries texlive-binaries 2020.20200327.54578-7+deb11u1 install ok installed texlive-fonts-recommended texlive-fonts-recommended 2020.20210202-3 install ok installed texlive-latex-base texlive-latex-base 2020.20210202-3 install ok installed texlive-latex-extra texlive-latex-extra 2020.20210202-3 install ok installed texlive-latex-recommended texlive-latex-recommended 2020.20210202-3 install ok installed texlive-pictures texlive-pictures 2020.20210202-3 install ok installed texlive-plain-generic texlive-plain-generic 2020.20210202-3 install ok installed texlive-xetex texlive-xetex 2020.20210202-3 install ok installed tipa tipa 2:1.3-20.1 install ok installed tk tk 8.6.11+1 install ok installed tk8.6 tk8.6 8.6.11-2 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4.1 install ok installed trim-galore trim-galore 0.6.6-1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed x11-common x11-common 1:7.7+22 install ok installed x11-utils x11-utils 7.7+5 install ok installed x11-xserver-utils x11-xserver-utils 7.7+8 install ok installed xauth xauth 1:1.1-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.1 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xkb-data xkb-data 2.29-2 install ok installed xml-core xml-core 0.18+nmu1 install ok installed xz-utils xz-utils 5.2.5-2.1~deb11u1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-2+deb11u2 8m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 8m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'remove', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'ant', 'ant-optional', 'at-spi2-core', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-10', 'curl', 'cutadapt', 'cwltool', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dirmngr', 'dmsetup', 'docutils-common', 'dpkg-dev', 'dvisvgm', 'fakeroot', 'fastqc', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-liberation2', 'fonts-lmodern', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-mono', 'fonts-texgyre', 'fonts-urw-base35', 'g++-', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'ghostscript', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'hdf5-helpers', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'icu-devtools', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'java-common', 'javascript-common', 'less', 'libactivation-java', 'libaec-dev:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclone-perl', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgirepository-1.0-1:amd64', 'libgit2-1.1:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttp-parser2.9:amd64', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase25:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-filesaver', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-lunr', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoup-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-6:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenexr25:amd64', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpcg-cpp-dev', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libpdfbox-java', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsodium23:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsuperlu5:amd64', 'libsynctex2:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libucx0:amd64', 'libudunits2-0', 'libudunits2-data', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-commons-resolver1.1-java', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mocha', 'mpi-default-bin', 'multiqc', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'netpbm', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-clipboard', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'pkg-config', 'poppler-data', 'preview-latex-style', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-alabaster', 'python3-appdirs', 'python3-arcp', 'python3-argcomplete', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-babel', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-bs4', 'python3-cachecontrol', 'python3-cachetools', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cryptography', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-dropbox', 'python3-flask', 'python3-ftputil', 'python3-future', 'python3-gdal', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-google-auth', 'python3-html5lib', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-irodsclient', 'python3-isodate', 'python3-itsdangerous', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-kubernetes', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msal', 'python3-msal-extensions', 'python3-msgpack', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-mypy-extensions', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-oauthlib', 'python3-olefile', 'python3-openssl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-portalocker', 'python3-prettytable', 'python3-prov', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyasn1', 'python3-pyasn1-modules', 'python3-pybigwig', 'python3-pydot', 'python3-pygments', 'python3-pygraphviz', 'python3-pyinotify', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retrying', 'python3-roman', 'python3-rsa', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-schema-salad', 'python3-scipy', 'python3-setuptools', 'python3-shellescape', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-spectra', 'python3-sphinx', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-urllib3', 'python3-webencodings', 'python3-websocket', 'python3-werkzeug', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yappi', 'python3-yarl', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocneighbors', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biocstyle', 'r-bioc-biocviews', 'r-bioc-biostrings', 'r-bioc-bluster', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-deseq2', 'r-bioc-edger', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-glmgampoi', 'r-bioc-go.db', 'r-bioc-graph', 'r-bioc-hdf5array', 'r-bioc-hsmmsinglecell', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-matrixgenerics', 'r-bioc-monocle', 'r-bioc-org.hs.eg.db', 'r-bioc-rbgl', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-scran', 'r-bioc-scuttle', 'r-bioc-shortread', 'r-bioc-singlecellexperiment', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bh', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bookdown', 'r-cran-boot', 'r-cran-brew', 'r-cran-brio', 'r-cran-broom', 'r-cran-cachem', 'r-cran-callr', 'r-cran-caret', 'r-cran-catools', 'r-cran-cba', 'r-cran-checkmate', 'r-cran-class', 'r-cran-classint', 'r-cran-cli', 'r-cran-cliapp', 'r-cran-clipr', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-combinat', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-covr', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-credentials', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-dbplyr', 'r-cran-ddalpha', 'r-cran-ddrtree', 'r-cran-decor', 'r-cran-deldir', 'r-cran-densityclust', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-devtools', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dimred', 'r-cran-docopt', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-drr', 'r-cran-dt', 'r-cran-dygraphs', 'r-cran-dynamictreecut', 'r-cran-e1071', 'r-cran-earth', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastica', 'r-cran-fastmap', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-fnn', 'r-cran-fontbitstreamvera', 'r-cran-fontliberation', 'r-cran-fontquiver', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-freetypeharfbuzz', 'r-cran-fs', 'r-cran-fts', 'r-cran-furrr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-gdata', 'r-cran-gdtools', 'r-cran-generics', 'r-cran-geometry', 'r-cran-geosphere', 'r-cran-gert', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggthemes', 'r-cran-gh', 'r-cran-gitcreds', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gprofiler', 'r-cran-gridextra', 'r-cran-gsl', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-ini', 'r-cran-ipred', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-ks', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-linprog', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-logcondens', 'r-cran-lpsolve', 'r-cran-lubridate', 'r-cran-lwgeom', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-maptools', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mclust', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mets', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modeldata', 'r-cran-modelmetrics', 'r-cran-multicool', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-mvtnorm', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-parallelly', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-praise', 'r-cran-prettycode', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-processx', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-proxy', 'r-cran-ps', 'r-cran-purrr', 'r-cran-qlcmatrix', 'r-cran-quadprog', 'r-cran-quantmod', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r6', 'r-cran-randomfields', 'r-cran-randomfieldsutils', 'r-cran-ranger', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-raster', 'r-cran-rcmdcheck', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-rematch2', 'r-cran-remotes', 'r-cran-reshape2', 'r-cran-rex', 'r-cran-rgdal', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-rmysql', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-roxygen2', 'r-cran-rpart', 'r-cran-rpostgresql', 'r-cran-rprojroot', 'r-cran-rsample', 'r-cran-rsclient', 'r-cran-rspectra', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-rsvd', 'r-cran-rtsne', 'r-cran-runit', 'r-cran-rversions', 'r-cran-scales', 'r-cran-selectr', 'r-cran-sendmailr', 'r-cran-sessioninfo', 'r-cran-setrng', 'r-cran-sf', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-slam', 'r-cran-slider', 'r-cran-snow', 'r-cran-sodium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-sparsem', 'r-cran-sparsesvd', 'r-cran-spatial', 'r-cran-spatstat', 'r-cran-spatstat.data', 'r-cran-spatstat.utils', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-systemfonts', 'r-cran-teachingdemos', 'r-cran-tensor', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-timereg', 'r-cran-timeseries', 'r-cran-tinytex', 'r-cran-tseries', 'r-cran-ttr', 'r-cran-units', 'r-cran-usethis', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-vdiffr', 'r-cran-vgam', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-warp', 'r-cran-webutils', 'r-cran-whisker', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xopen', 'r-cran-xtable', 'r-cran-xts', 'r-cran-yaml', 'r-cran-zip', 'r-cran-zoo', 'r-doc-html', 'r-recommended', 'rake', 'readline-common', 'rna-star', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 't1utils', 'tcl', 'tcl8.6', 'teckit', 'termit', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-bibtex-extra', 'texlive-binaries', 'texlive-fonts-recommended', 'texlive-latex-base', 'texlive-latex-extra', 'texlive-latex-recommended', 'texlive-pictures', 'texlive-plain-generic', 'texlive-xetex', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'pigx-rnaseq'] 9m57.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adwaita-icon-theme alsa-topology-conf alsa-ucm-conf ant ant-optional at-spi2-core binutils binutils-common binutils-x86-64-linux-gnu blt build-essential bzip2 bzip2-doc ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-10 curl cutadapt cwltool dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless dirmngr dmsetup docutils-common dpkg-dev dvisvgm fakeroot fastqc file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-droid-fallback fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-liberation2 fonts-lmodern fonts-lyx fonts-mathjax fonts-noto-mono fonts-texgyre fonts-urw-base35 g++ g++-10 gcc gcc-10 gdal-data gfortran gfortran-10 ghostscript gir1.2-glib-2.0 git git-man glib-networking glib-networking-common glib-networking-services gnupg gnupg-l10n gnupg-utils gpg 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r-cran-goftest r-cran-gower r-cran-gplots r-cran-gprofiler r-cran-gridextra r-cran-gsl r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-igraph r-cran-ini r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-ks r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-linprog r-cran-listenv r-cran-littler r-cran-lme4 r-cran-locfit r-cran-logcondens r-cran-lpsolve r-cran-lubridate r-cran-lwgeom r-cran-magic r-cran-magrittr r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mclust r-cran-mda r-cran-memoise r-cran-mets r-cran-mgcv r-cran-mime r-cran-miniui r-cran-minqa r-cran-mlbench r-cran-mlmetrics r-cran-mockery r-cran-mockr r-cran-modeldata r-cran-modelmetrics r-cran-multicool r-cran-multicore r-cran-munsell r-cran-mvtnorm r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plotmo r-cran-plotrix r-cran-pls r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise r-cran-prettycode r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim r-cran-progress r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-qlcmatrix r-cran-quadprog r-cran-quantmod r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r6 r-cran-randomfields r-cran-randomfieldsutils r-cran-ranger r-cran-rann r-cran-rappdirs r-cran-raster r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpproll r-cran-rcurl r-cran-recipes r-cran-rematch2 r-cran-remotes r-cran-reshape2 r-cran-rex r-cran-rgdal r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rmpi r-cran-rmysql r-cran-robustbase r-cran-rocr r-cran-roxygen2 r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsample r-cran-rsclient r-cran-rspectra r-cran-rsqlite r-cran-rstudioapi r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-rversions r-cran-scales r-cran-selectr r-cran-sendmailr r-cran-sessioninfo r-cran-setrng r-cran-sf r-cran-sfsmisc r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-slam r-cran-slider r-cran-snow r-cran-sodium r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-sparsesvd r-cran-spatial r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-teachingdemos r-cran-tensor r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tikzdevice r-cran-timedate r-cran-timereg r-cran-timeseries r-cran-tinytex r-cran-tseries r-cran-ttr r-cran-units r-cran-usethis r-cran-utf8 r-cran-vctrs r-cran-vdiffr r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-warp r-cran-webutils r-cran-whisker r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable r-cran-xts r-cran-yaml r-cran-zip r-cran-zoo r-doc-html r-recommended rake readline-common rna-star ruby ruby-minitest ruby-net-telnet ruby-power-assert ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common sphinx-rtd-theme-common systemd systemd-sysv systemd-timesyncd t1utils tcl tcl8.6 teckit termit tex-common tex-gyre texlive-base texlive-bibtex-extra texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic texlive-xetex tipa tk tk8.6 tk8.6-blt2.5 trim-galore ttf-bitstream-vera ucf unzip x11-common x11-utils x11-xserver-utils xauth xdg-user-dirs xdg-utils xfonts-encodings xfonts-utils xkb-data xml-core xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 1394 to remove and 0 not upgraded. After this operation, 4427 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 178152 files and directories currently installed.) Removing termit (3.1-1) ... Removing libvte-2.91-0:amd64 (0.62.3-1) ... Removing notification-daemon (3.20.0-4) ... Removing alsa-topology-conf (1.2.4-1) ... Removing alsa-ucm-conf (1.2.4-2) ... Removing pigx-rnaseq (0.0.10+ds-2) ... Removing fastqc (0.11.9+dfsg-4) ... Removing libhtsjdk-java (2.23.0+dfsg-2) ... 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Removing python3-biopython (1.78+dfsg-4) ... Removing python3-reportlab (3.5.59-2) ... Removing python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Removing mesa-vulkan-drivers:amd64 (20.3.5-1) ... Removing libbz2-dev:amd64 (1.0.8-4) ... Removing r-bioc-rtracklayer (1.50.0-1) ... Removing r-bioc-genomicalignments (1.26.0-1) ... Removing r-bioc-rsamtools (2.6.0-1) ... Removing libpng-dev:amd64 (1.6.37-3) ... Removing libreadline-dev:amd64 (8.1-1) ... Removing libncurses5-dev:amd64 (6.2+20201114-2+deb11u2) ... Removing libncurses-dev:amd64 (6.2+20201114-2+deb11u2) ... Removing libpcre3-dev:amd64 (2:8.39-13) ... Removing libjpeg-dev:amd64 (1:2.0.6-4) ... Removing libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Removing libc-devtools (2.31-13+deb11u8) ... Removing libgvc6 (2.42.2-5) ... Removing r-cran-gdtools (0.2.3-1) ... Removing openssh-client (1:8.4p1-5+deb11u3) ... Removing libfido2-1:amd64 (1.6.0-2) ... Removing libcbor0:amd64 (0.5.0+dfsg-2) ... Removing libgvpr2:amd64 (2.42.2-5) ... Removing libcgraph6:amd64 (2.42.2-5) ... Removing libcdt5:amd64 (2.42.2-5) ... Removing libclone-perl (0.45-1+b1) ... Removing pandoc (2.9.2.1-1+deb11u1) ... Removing libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Removing libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Removing libcommons-jexl2-java (2.1.1-5) ... Removing libcommons-math3-java (3.6.1-3) ... Removing libstaden-read14:amd64 (1.14.13-4) ... Removing r-cran-gprofiler (0.7.0-2) ... Removing r-cran-webutils (1.1-1+b1) ... Removing libdata-dump-perl (1.23-1.1) ... Removing python3-datrie:amd64 (0.8.2-1+b1) ... Removing libnet-dbus-perl (1.2.0-1+b1) ... Removing proj-bin (7.2.1-1) ... Removing samtools (1.11-1) ... Removing libdjvulibre21:amd64 (3.5.28-2) ... Removing libdjvulibre-text (3.5.28-2) ... Removing pkg-config (0.29.2-1) ... Removing libdpkg-perl (1.20.13) ... Removing libgl1:amd64 (1.3.2-1) ... Removing libglx0:amd64 (1.3.2-1) ... Removing libglx-mesa0:amd64 (20.3.5-1) ... Removing libgl1-mesa-dri:amd64 (20.3.5-1) ... Removing libdrm-amdgpu1:amd64 (2.4.104-1) ... Removing libdrm-intel1:amd64 (2.4.104-1) ... Removing libdrm-nouveau2:amd64 (2.4.104-1) ... Removing libdrm-radeon1:amd64 (2.4.104-1) ... Removing libdtd-parser-java (1.2-1) ... Removing libllvm11:amd64 (1:11.0.1-2) ... Removing libelf1:amd64 (0.183-1) ... Removing libxml-twig-perl (1:3.52-1) ... Removing libxml-parser-perl:amd64 (2.46-2) ... Removing liberror-perl (0.17029-1) ... Removing libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing r-cran-units (0.6-7-1) ... Removing libudunits2-0 (2.2.28-3) ... Removing teckit (2.5.10+ds1-3) ... Removing libfakeroot:amd64 (1.25.3-1.1) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfile-mimeinfo-perl (0.30-1) ... Removing libfile-desktopentry-perl (0.22-2) ... Removing libfile-basedir-perl (0.08-1) ... Removing libfile-fcntllock-perl (0.22-3+b7) ... Removing libfindbin-libs-perl (2.190.02-1) ... Removing libhtml-format-perl (2.12-1.1) ... Removing libfont-afm-perl (1.20-3) ... Removing libpdfbox-java (1:1.8.16-2) ... Removing libfontbox-java (1:1.8.16-2) ... Removing tex-gyre (20180621-3.1) ... Removing xfonts-utils (1:7.7+6) ... Removing libfontenc1:amd64 (1:1.1.4-1) ... Removing r-cran-systemfonts (1.0.0-1) ... Removing libgd3:amd64 (2.3.0-2) ... Removing python3-aiohttp (3.7.4-1) ... Removing python3-yarl (1.6.3-2) ... Removing python3-kubernetes (12.0.1-1) ... Removing python3-plotly (4.14.3+dfsg-1) ... Removing python3-nbformat (5.1.2-1) ... Removing python3-jsonschema (3.2.0-3) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-jupyter-core (4.7.1-1+deb11u1) ... Removing python3-distutils (3.9.2-1) ... Removing texlive-pictures (2020.20210202-3) ... Removing python3-websocket (0.57.0-1) ... Removing python3-yappi (1.0-1+b5) ... Removing python3-spectra (0.0.11-2) ... Removing python3-colormath (3.0.0-1.1) ... Removing python3-gdal (3.2.2+dfsg-2+deb11u2) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing ncbi-blast+ (2.11.0+ds-1) ... Removing libhttp-daemon-perl (6.12-1+deb11u1) ... Removing libmailtools-perl (2.21-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libx11-protocol-perl (0.56-7.1) ... Removing node-growl (1.10.5-2) ... Removing libnotify-bin (0.7.9-3) ... Removing libnotify4:amd64 (0.7.9-3) ... Removing libgdk-pixbuf2.0-bin (2.42.2+dfsg-1+deb11u1) ... Removing libgdk-pixbuf2.0-0:amd64 (2.40.2-2) ... Removing libgdk-pixbuf-xlib-2.0-0:amd64 (2.40.2-2) ... Removing r-cran-quantreg (5.85-1) ... Removing r-bioc-monocle (2.18.0-1) ... Removing libghc-pandoc-citeproc-data (0.17.0.1-1) ... Removing libgirepository-1.0-1:amd64 (1.66.1-1+b1) ... Removing r-cran-usethis (2.0.0-1) ... Removing r-cran-gert (1.1.0-1) ... Removing libgit2-1.1:amd64 (1.1.0+dfsg.1-4+deb11u1) ... Removing libglapi-mesa:amd64 (20.3.5-1) ... Removing liblqr-1-0:amd64 (0.4.2-2.1) ... Removing libglib2.0-data (2.66.8-1+deb11u1) ... Removing libglvnd0:amd64 (1.3.2-1) ... Removing r-cran-sitmo (2.0.1-2+b1) ... Removing r-cran-densityclust (0.3-2) ... Removing r-cran-rtsne (0.15-2+b1) ... Removing libgpm2:amd64 (1.20.7-8) ... Removing r-cran-gsl (2.1-6-2) ... Removing libgsl25:amd64 (2.6+dfsg-2) ... Removing libgslcblas0:amd64 (2.6+dfsg-2) ... Removing libgts-bin (0.7.6+darcs121130-4+b1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4+b1) ... Removing libjansi-java (1.18-1) ... Removing libjansi-native-java (1.8-1) ... Removing libhawtjni-runtime-java (1.17-1) ... Removing libhdf5-cpp-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhdf5-hl-fortran-100:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhdf5-fortran-102:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhdf5-hl-cpp-100:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhtml-form-perl (6.07-1) ... Removing libhtscodecs2:amd64 (0.5-3) ... Removing libhttp-parser2.9:amd64 (2.9.4-4+deb11u1) ... Removing libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Removing libhwloc15:amd64 (2.4.1+dfsg-1) ... Removing librdmacm1:amd64 (33.2-1) ... Removing libibverbs1:amd64 (33.2-1) ... Removing r-cran-cliapp (0.1.1-1) ... Removing r-cran-selectr (0.4-2-2) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-batchtools (0.9.15+dfsg-1) ... Removing r-cran-rversions (2.0.2-1) ... Removing r-cran-xml2 (1.3.2-1+b1) ... Removing libidn11:amd64 (1.33-3) ... Removing libijs-0.35:amd64 (0.35-15) ... Removing libopenexr25:amd64 (2.5.4-2+deb11u1) ... Removing libilmbase25:amd64 (2.5.4-1) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-system-simple-perl (1.30-1) ... Removing libjbig2dec0:amd64 (0.19-2) ... Removing libjbzip2-java (0.9.1-5) ... Removing libjemalloc2:amd64 (5.2.1-3) ... Removing r-cran-latticeextra (0.6-29-3) ... Removing r-cran-jpeg (0.1-8.1-1+b1) ... Removing node-d3 (5.16.0-4) ... Removing node-d3-scale (2.2.2-3) ... Removing node-d3-format (1:1.4.1-3) ... Removing libjs-d3-format (1:1.4.1-3) ... Removing libjs-filesaver (2.0.2+dfsg-3) ... Removing r-cran-highr (0.8+dfsg-2) ... Removing nodejs-doc (12.22.12~dfsg-1~deb11u4) ... Removing node-assert (1.5.0-1) ... Removing node-util (0.10.3-4) ... Removing libjs-util (0.10.3-4) ... Removing node-glob (7.1.6+~7.1.3-1) ... Removing sphinx-common (3.4.3-2) ... Removing libjs-sphinxdoc (3.4.3-2) ... Removing r-cran-dygraphs (1.1.1.6+dfsg-2) ... Removing r-cran-dt (0.17+dfsg-3) ... Removing libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Removing libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Removing libjs-jquery-metadata (12-3) ... Removing libjs-lunr (2.3.8~dfsg-2) ... Removing libjs-modernizr (2.6.2+ds1-4) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Removing node-argparse (2.0.1-1) ... Removing node-sprintf-js (1.1.2+ds1-2) ... Removing libjs-sprintf-js (1.1.2+ds1-2) ... Removing libjs-underscore (1.9.1~dfsg-3) ... Removing libjxr-tools (1.1-6+b1) ... Removing libjxr0:amd64 (1.1-6+b1) ... Removing libksba8:amd64 (1.5.0-3+deb11u2) ... Removing liblab-gamut1:amd64 (2.42.2-5) ... Removing r-cran-mets (1.2.8.1+dfsg-1) ... Removing r-cran-timereg (1.9.8-1) ... Removing r-cran-rspectra (0.16-0-1+b1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Removing r-cran-rpostgresql (0.6-2+dfsg-3) ... Removing libldap-common (2.4.57+dfsg-3+deb11u1) ... Removing liblmdb0:amd64 (0.9.24-1) ... Removing liblocale-gettext-perl (1.07-4+b1) ... Removing liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Removing liblzma-dev:amd64 (5.2.5-2.1~deb11u1) ... Removing libmagic1:amd64 (1:5.39-3+deb11u1) ... Removing libmagic-mgc (1:5.39-3+deb11u1) ... Removing r-cran-rmysql (0.10.21-1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing netpbm (2:10.0-15.4) ... Removing libnetpbm10 (2:10.0-15.4) ... Removing libngs-java:amd64 (2.10.9-1) ... Removing libngs-sdk-dev:amd64 (2.10.9-1) ... Removing libngs-sdk2:amd64 (2.10.9-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing r-cran-lme4 (1.1-26-1) ... Removing r-cran-nloptr (1.2.2.2-1) ... Removing libnlopt0:amd64 (2.7.0-4+b2) ... Removing libnpth0:amd64 (1.6-3) ... Removing libnss-systemd:amd64 (247.3-7+deb11u4) ... Checking NSS setup... Removing libpsm2-2 (11.2.185-1) ... Removing libpathplan4:amd64 (2.42.2-5) ... Removing libpcg-cpp-dev (0.98.1-2) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpcre16-3:amd64 (2:8.39-13) ... Removing libpcre2-dev:amd64 (10.36-2+deb11u1) ... Removing libpcre2-16-0:amd64 (10.36-2+deb11u1) ... Removing libpcre2-32-0:amd64 (10.36-2+deb11u1) ... Removing libpcre2-posix2:amd64 (10.36-2+deb11u1) ... Removing libpcre32-3:amd64 (2:8.39-13) ... Removing libpcrecpp0v5:amd64 (2:8.39-13) ... Removing libpng-tools (1.6.37-3) ... Removing r-cran-tikzdevice (0.12.3.1-1) ... Removing r-cran-png (0.1-7-4) ... Removing libwmf0.2-7:amd64 (0.2.8.4-17) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing python3-deeptoolsintervals (0.1.9-3+b2) ... Removing libpython3.9:amd64 (3.9.2-1) ... Removing libxsom-java (2.3.0.1-10) ... Removing librngom-java (2.3.0.1-10) ... Removing librelaxng-datatype-java (1.0+ds1-3.1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsensors5:amd64 (1:3.6.0-7) ... Removing libsensors-config (1:3.6.0-7) ... Removing libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Removing libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Removing r-cran-sodium (1.1-1+b2) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing libtbb2:amd64 (2020.3-1) ... Removing tcl (8.6.11+1) ... Removing tcl8.6 (8.6.11+dfsg-1) ... Removing libtext-iconv-perl (1.7-7+b1) ... Removing libtie-ixhash-perl (1.23-2.1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Removing libudunits2-data (2.2.28-3) ... Removing r-cran-fs (1.5.0+dfsg-1) ... Removing libvte-2.91-common (0.62.3-1) ... Removing libvulkan1:amd64 (1.2.162.0-1) ... Removing libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Removing xauth (1:1.1-1) ... Removing libxnvctrl0:amd64 (470.141.03-1~deb11u1) ... Removing libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb-dri2-0:amd64 (1.14-3) ... Removing libxcb-dri3-0:amd64 (1.14-3) ... Removing libxcb-glx0:amd64 (1.14-3) ... Removing libxcb-present0:amd64 (1.14-3) ... Removing libxcb-randr0:amd64 (1.14-3) ... Removing libxcb-shape0:amd64 (1.14-3) ... Removing libxcb-sync1:amd64 (1.14-3) ... Removing libxcb-xfixes0:amd64 (1.14-3) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxkbfile1:amd64 (1:1.1.0-1) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing python3-prov (1.5.2-2) ... Removing python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Removing libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Removing libxv1:amd64 (2:1.0.11-1) ... Removing libxxf86dga1:amd64 (2:1.1.4-1+b3) ... Removing python3-yaml (5.3.1-5) ... 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Removing r-cran-randomfieldsutils (0.5.3-2) ... Removing r-cran-rann (2.6.1-1+b2) ... Removing r-cran-rappdirs (0.3.3-1) ... Removing r-cran-rcpphnsw (0.3.0.9001+ds-1+b1) ... Removing r-cran-rcppprogress (0.4.2-2) ... Removing r-cran-rcpproll (0.3.0-2) ... Removing r-cran-remotes (2.2.0-2) ... Removing r-cran-rsclient (0.7-3-2+b4) ... Removing r-cran-rsvd (1.0.3-3) ... Removing r-cran-runit (0.4.32-3) ... Removing r-cran-sessioninfo (1.1.1-4) ... Removing r-cran-setrng (2013.9-1-3) ... Removing r-cran-sfsmisc (1.1-8-1) ... Removing r-cran-slam (0.1-48-1) ... Removing r-cran-sparsem (1.81-1) ... Removing r-cran-sparsesvd (0.2-2) ... Removing r-cran-spatial (7.3-13-1) ... Removing r-cran-spatstat.utils (2.0-0-1) ... Removing r-cran-squarem (2021.1-1) ... Removing r-cran-statmod (1.4.35-1) ... Removing r-cran-sys (3.4-1) ... Removing r-cran-teachingdemos (2.12-2) ... Removing r-cran-tensor (1.5-4) ... Removing r-cran-testit (0.12-1) ... Removing r-cran-timeseries (3062.100-2) ... Removing r-cran-timedate (3043.102-1+b2) ... Removing r-cran-tinytex (0.29-1) ... Removing r-cran-vgam (1.1-5-1) ... Removing r-cran-warp (0.2.0-1) ... Removing r-cran-whisker (0.4-2) ... Removing r-cran-xfun (0.20-1) ... Removing r-cran-xml (3.99-0.5-1) ... Removing r-cran-yaml (2.2.1-1+b1) ... Removing r-cran-zip (2.1.1-1) ... Removing r-doc-html (4.0.4-1) ... Removing rna-star (2.7.8a+dfsg-2) ... Removing texlive-latex-recommended (2020.20210202-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.30) ... Removing texlive-fonts-recommended (2020.20210202-3) ... Removing xfonts-encodings (1:1.0.4-2.1) ... dpkg: warning: while removing xfonts-encodings, directory '/usr/share/fonts/X11/encodings/large' not empty so not removed Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.5-2.1~deb11u1) ... Removing libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Removing adwaita-icon-theme (3.38.0-1) ... Removing gcc-10 (10.2.1-6) ... Removing binutils (2.35.2-2) ... Removing binutils-x86-64-linux-gnu (2.35.2-2) ... Removing libctf0:amd64 (2.35.2-2) ... Removing libbinutils:amd64 (2.35.2-2) ... Removing binutils-common:amd64 (2.35.2-2) ... Removing cpp-10 (10.2.1-6) ... Removing libgtk-3-common (3.24.24-4+deb11u3) ... Removing librest-0.7-0:amd64 (0.8.1-1.1) ... Removing libsoup-gnome2.4-1:amd64 (2.72.0-2) ... Removing libsoup2.4-1:amd64 (2.72.0-2) ... Removing glib-networking:amd64 (2.66.0-2) ... Removing gsettings-desktop-schemas (3.38.0-2) ... Removing dconf-gsettings-backend:amd64 (0.38.0-2) ... Removing dconf-service (0.38.0-2) ... Removing dbus-user-session (1.12.28-0+deb11u1) ... Removing libpam-systemd:amd64 (247.3-7+deb11u4) ... Removing dbus (1.12.28-0+deb11u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing systemd-sysv (247.3-7+deb11u4) ... Removing systemd (247.3-7+deb11u4) ... Removing libcryptsetup12:amd64 (2:2.3.7-1+deb11u1) ... Removing r-cran-rpart (4.1-15-2+b1) ... Removing r-cran-survival (3.2-7-1) ... Removing r-bioc-biocparallel (1.24.1-1) ... Removing r-cran-snow (1:0.4.3-2) ... Removing r-cran-crosstalk (1.1.1+dfsg-2) ... Removing texlive-latex-base (2020.20210202-3) ... Removing fonts-lmodern (2.004.5-6.1) ... Removing libgdal28 (3.2.2+dfsg-2+deb11u2) ... Removing gdal-data (3.2.2+dfsg-2+deb11u2) ... Removing glib-networking-services (2.66.0-2) ... dpkg: warning: while removing glib-networking-services, directory '/usr/lib/systemd' not empty so not removed Removing glib-networking-common (2.66.0-2) ... Removing gtk-update-icon-cache (3.24.24-4+deb11u3) ... Removing hicolor-icon-theme (0.17-2) ... Removing libnetcdf18:amd64 (1:4.7.4-1) ... Removing libheif1:amd64 (1.11.0-1) ... Removing libaom0:amd64 (1.0.0.errata1-3+deb11u1) ... Removing libapparmor1:amd64 (2.13.6-10) ... Removing libargon2-1:amd64 (0~20171227-0.2) ... Removing libarmadillo10 (1:10.1.2+dfsg-6+b1) ... Removing libarpack2:amd64 (3.8.0-1) ... Removing r-bioc-annotationdbi (1.52.0-1) ... Removing r-cran-rsqlite (2.2.3-1) ... Removing libatk-bridge2.0-0:amd64 (2.38.0-1) ... Removing libatk1.0-0:amd64 (2.36.0-2) ... Removing libatk1.0-data (2.36.0-2) ... Removing libatspi2.0-0:amd64 (2.38.0-4+deb11u1) ... Removing libsuperlu5:amd64 (5.2.2+dfsg1-2) ... Removing r-bioc-xvector (0.30.0-1) ... Removing r-bioc-zlibbioc (1.36.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Removing libcairo-gobject2:amd64 (1.16.0-5) ... Removing libcap2:amd64 (1:2.44-1) ... Removing libcc1-0:amd64 (10.2.1-6) ... Removing libcfitsio9:amd64 (3.490-3) ... Removing libcharls2:amd64 (2.2.0+dfsg-2) ... Removing libcolord2:amd64 (1.4.5-3) ... Removing libctf-nobfd0:amd64 (2.35.2-2) ... Removing libxerces-c3.2:amd64 (3.2.3+debian-3+deb11u1) ... Removing r-cran-rcurl (1.98-1.2-1+b1) ... Removing r-cran-curl (4.3+dfsg-1+b1) ... Removing libdapclient6v5:amd64 (3.20.7-6) ... Removing libdap27:amd64 (3.20.7-6) ... Removing libdav1d4:amd64 (0.7.1-3) ... Removing libdconf1:amd64 (0.38.0-2) ... Removing libde265-0:amd64 (1.0.11-0+deb11u3) ... Removing libspatialite7:amd64 (5.0.1-2) ... Removing libpoppler102:amd64 (20.09.0-3.1+deb11u1) ... Removing libhts3:amd64 (1.11-4) ... Removing libdrm2:amd64 (2.4.104-1) ... Removing libdrm-common (2.4.104-1) ... Removing libepoxy0:amd64 (1.5.5-1) ... Removing libepsilon1:amd64 (0.9.2+dfsg-5) ... Removing libfreexl1:amd64 (1.0.6-1) ... Removing libfyba0:amd64 (4.1.1-7) ... Removing python3-numpy (1:1.19.5-1) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Removing libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Removing librttopo1:amd64 (1.1.0-2) ... Removing libgeos-c1v5:amd64 (3.9.0-1) ... Removing libgeos-3.9.0:amd64 (3.9.0-1) ... Removing libgeotiff5:amd64 (1.6.0-1) ... Removing r-cran-igraph (1.2.6-1) ... Removing libgif7:amd64 (5.1.9-2) ... Removing shared-mime-info (2.0-1) ... Removing libhdf4-0-alt (4.2.15-3) ... Removing libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Removing r-cran-stringr (1.4.0-2) ... Removing r-cran-stringi (1.5.3-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libip4tc2:amd64 (1.8.7-1) ... Removing libisl23:amd64 (0.23-1) ... Removing node-inherits (2.0.4-1) ... Removing libjs-inherits (2.0.4-1) ... Removing libjson-c5:amd64 (0.15-2+deb11u1) ... Removing libjson-glib-1.0-0:amd64 (1.6.2-1) ... Removing libjson-glib-1.0-common (1.6.2-1) ... Removing libkmlengine1:amd64 (1.3.0-9) ... Removing libkmldom1:amd64 (1.3.0-9) ... Removing libkmlbase1:amd64 (1.3.0-9) ... Removing libkmod2:amd64 (28-1) ... Removing libpq5:amd64 (13.13-0+deb11u1) ... Removing libodbc1:amd64 (2.3.6-0.1+b1) ... Removing libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Removing libminizip1:amd64 (1.1-8+deb11u1) ... Removing libmpc3:amd64 (1.2.0-1) ... Removing libx265-192:amd64 (3.4-2) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libogdi4.1 (4.1.0+ds-5) ... Removing libopenjp2-7:amd64 (2.4.0-3) ... Removing libproxy1v5:amd64 (0.4.17-1) ... Removing libqhull8.0:amd64 (2020.2-3) ... Removing liburiparser1:amd64 (0.9.4+dfsg-1+deb11u1) ... Removing libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ... Removing libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Removing libwayland-egl1:amd64 (1.18.0-2~exp1.1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.0-2) ... Removing libxdamage1:amd64 (1:1.1.5-2) ... Removing libxfixes3:amd64 (1:5.0.3-2) ... Removing libxinerama1:amd64 (2:1.1.4-2) ... Removing libxkbcommon0:amd64 (1.0.3-2) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mysql-common (5.8+1.0.7) ... Removing node-d3-array (1.2.4-3) ... Removing node-d3-interpolate (1.4.0-2) ... Removing node-d3-color (1.2.8-2) ... Removing python3-pkg-resources (52.0.0-4) ... Removing python3-six (1.16.0-2) ... Removing r-bioc-biobase (2.50.0-1) ... Removing r-bioc-iranges (2.24.1-1) ... Removing r-bioc-s4vectors (0.28.1-1) ... Removing r-bioc-biocgenerics (0.36.0-1) ... Removing r-cran-backports (1.2.1-1) ... Removing r-cran-bit64 (4.0.5-1) ... Removing r-cran-bit (4.0.4+dfsg-1) ... Removing r-cran-bitops (1.0-6-5) ... Removing r-cran-blob (1.2.1-2) ... Removing r-cran-memoise (2.0.0-1) ... Removing r-cran-cachem (1.0.3-1) ... Removing r-cran-foreach (1.5.1-1) ... Removing r-cran-codetools (0.2-18-1) ... Removing r-cran-dbi (1.1.1-1) ... Removing r-cran-ggplot2 (3.3.3+dfsg-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.7-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-gtable (0.3.0+dfsg-2) ... Removing r-cran-isoband (0.2.3-2) ... Removing r-cran-iterators (1.0.13-1) ... Removing r-cran-sp (1:1.4-5-1) ... Removing r-cran-lazyeval (0.2.2-1+b1) ... Removing r-cran-mass (7.3-53.1-1) ... Removing r-cran-mgcv (1.8-34-1) ... Removing r-cran-nlme (3.1.152-1) ... Removing r-cran-plogr (0.2.0-3) ... Removing xkb-data (2.29-2) ... Removing texlive-base (2020.20210202-3) ... Removing texlive-binaries (2020.20200327.54578-7+deb11u1) ... Removing r-cran-shiny (1.5.0+dfsg-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing r-cran-matrix (1.3-2-1) ... Removing nodejs (12.22.12~dfsg-1~deb11u4) ... Removing libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Removing libxaw7:amd64 (2:1.0.13-1.1) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libc-ares2:amd64 (1.17.1-1+deb11u3) ... Removing libproj19:amd64 (7.2.1-1) ... Removing python3 (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.5.15-1) ... Removing libjs-highlight.js (9.18.5+dfsg1-1) ... Removing libjs-jquery-datatables (1.10.21+dfsg-2+deb11u1) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Removing libjs-json (0~20190826+~1.0.5-2) ... Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ... Removing libjs-sifter.js (0.6.0+dfsg-1) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing libptexenc1:amd64 (2020.20200327.54578-7+deb11u1) ... Removing libkpathsea6:amd64 (2020.20200327.54578-7+deb11u1) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libsynctex2:amd64 (2020.20200327.54578-7+deb11u1) ... Removing libteckit0:amd64 (2.5.10+ds1-3) ... Removing libtexlua53:amd64 (2020.20200327.54578-7+deb11u1) ... Removing libtexluajit2:amd64 (2020.20200327.54578-7+deb11u1) ... Removing r-cran-httpuv (1.5.5+dfsg-1) ... Removing libuv1:amd64 (1.40.0-2) ... Removing libxi6:amd64 (2:1.7.10-1) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libzzip-0-13:amd64 (0.13.62-3.3+deb11u1) ... Removing media-types (4.0.0) ... Removing node-html5shiv (3.7.3+dfsg-3) ... Removing node-normalize.css (8.0.1-3) ... Removing proj-data (7.2.1-1) ... Removing r-cran-testthat (3.0.1-1) ... Removing r-cran-htmltools (0.5.1.1-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-brio (1.1.1-1) ... Removing r-cran-pkgload (1.1.0-1) ... Removing r-cran-pkgbuild (1.2.0-1) ... Removing r-cran-callr (3.5.1-1) ... Removing r-cran-waldo (0.2.3-2) ... Removing r-cran-scales (1.1.1-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.0-0+dfsg-1) ... Removing r-cran-commonmark (1.7-2) ... Removing r-cran-diffobj (0.3.2-1) ... Removing r-cran-evaluate (0.14-2) ... Removing r-cran-farver (2.0.3-1+b1) ... Removing r-cran-fastmap (1.1.0-1) ... Removing r-cran-jsonlite (1.7.2+dfsg-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-promises (1.1.1+dfsg-1) ... Removing r-cran-later (1.1.0.1+dfsg-1) ... Removing r-cran-lattice (0.20-41-1+b1) ... Removing r-cran-mime (0.9-1+b1) ... Removing r-cran-praise (1.0.0-4) ... Removing r-cran-prettyunits (1.1.1-2) ... Removing r-cran-processx (3.4.5-1) ... Removing r-cran-ps (1.5.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-3) ... Removing r-cran-rematch2 (2.1.2-2) ... Removing r-cran-rstudioapi (0.13-1) ... Removing r-cran-sourcetools (0.1.7-3) ... Removing r-cran-viridislite (0.3.0-4) ... Removing r-cran-withr (2.4.1-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing tex-common (6.16) ... Removing t1utils (1.41-4) ... Removing libjs-bootstrap (3.4.1+dfsg-2) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing r-cran-bh (1.74.0-1) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-9) ... Removing libstdc++-10-dev:amd64 (10.2.1-6) ... Removing libgcc-10-dev:amd64 (10.2.1-6) ... Removing libasan6:amd64 (10.2.1-6) ... Removing libatomic1:amd64 (10.2.1-6) ... Removing libc6-dev:amd64 (2.31-13+deb11u8) ... Removing libc-dev-bin (2.31-13+deb11u8) ... Removing libcrypt-dev:amd64 (1:4.4.18-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Removing libitm1:amd64 (10.2.1-6) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing liblsan0:amd64 (10.2.1-6) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Removing libtsan0:amd64 (10.2.1-6) ... Removing libubsan1:amd64 (10.2.1-6) ... Removing linux-libc-dev:amd64 (5.10.209-2) ... Removing r-cran-rcpp (1.0.6-1) ... Removing r-cran-desc (1.2.0-3) ... Removing r-cran-tibble (3.0.6+dfsg-1) ... Removing r-cran-pillar (1.4.7-1) ... Removing r-cran-crayon (1.4.0-1) ... Removing r-cran-vctrs (0.3.6-1) ... Removing r-cran-digest (0.6.27-1) ... Removing r-cran-ellipsis (0.3.1-1) ... Removing r-cran-fansi (0.4.2-1) ... Removing r-cran-lifecycle (0.2.0-2) ... Removing r-cran-littler (0.3.12-1) ... Removing r-cran-magrittr (2.0.1-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.1-1) ... Removing r-cran-r6 (2.5.0-1) ... Removing r-cran-rlang (0.4.10-1) ... Removing r-cran-rprojroot (2.0.2-1) ... Removing r-cran-utf8 (1.1.4-2) ... Removing r-cran-cli (2.3.0-1) ... Removing r-cran-glue (1.4.2-1) ... Removing r-cran-assertthat (0.2.1-2) ... Removing r-base-core (4.0.4-1) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing libtk8.6:amd64 (8.6.11-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libicu67:amd64 (67.1-7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libtcl8.6:amd64 (8.6.11+dfsg-1) ... Removing libthai-data (0.1.28-3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing readline-common (8.1-1) ... Removing unzip (6.0-26+deb11u1) ... Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libistack-commons-java (3.0.6-5) ... Removing ant-optional (1.10.9-4) ... Removing ant (1.10.9-4) ... Removing ca-certificates-java (20190909+deb11u1) ... Removing openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... Removing dmsetup (2:1.02.175-2.1) ... Removing libdevmapper1.02.1:amd64 (2:1.02.175-2.1) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing java-common (0.72) ... Removing libactivation-java (1.2.0-2) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-3) ... Removing libmaven3-core-java (3.6.3-5) ... Removing libguice-java (4.2.3-2) ... Removing libaopalliance-java (20070526-6) ... Removing libmaven-parent-java (31-2) ... Removing libargs4j-java (2.33-1.1) ... Removing libasound2:amd64 (1.2.4-1.1) ... Removing libasound2-data (1.2.4-1.1) ... Removing libguava-java (29.0-6) ... Removing libsisu-plexus-java (0.3.4-3) ... Removing libsisu-inject-java (0.3.4-2) ... Removing libcdi-api-java (1.2-3) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Removing libavahi-client3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common-data:amd64 (0.8-5+deb11u2) ... Removing libcommons-cli-java (1.4-2) ... Removing libwagon-http-java (3.3.4-1) ... Removing libhttpclient-java (4.5.13-2) ... Removing libcommons-codec-java (1.15-1) ... Removing libplexus-archiver-java (3.6.0-2) ... Removing libcommons-compress-java (1.20-1) ... Removing libplexus-io-java (3.2.0-1.1) ... Removing libmaven-shared-utils-java (3.3.0-1+deb11u1) ... Removing libcommons-io-java (2.8.0-1) ... Removing libcommons-lang3-java (3.11-1) ... Removing libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Removing libdom4j-java (2.1.3-1) ... Removing ruby2.7 (2.7.4-1+deb11u1) ... Removing libruby2.7:amd64 (2.7.4-1+deb11u1) ... Removing rake (13.0.3-1) ... Removing ruby (1:2.7+2) ... Removing ruby-rubygems (3.2.5-2) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libwww-perl (6.52-1) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libfile-listing-perl (6.14-1) ... Removing libgeronimo-annotation-1.3-spec-java (1.3-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.75-1+b1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libhttpcore-java (4.4.14-1) ... Removing libio-socket-ssl-perl (2.069-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libjsoup-java (1.10.2-2) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1+b1) ... Removing odbcinst (2.3.6-0.1+b1) ... Removing libltdl7:amd64 (2.4.6-15) ... Removing libmaven-resolver-java (1.4.2-3) ... Removing libnet-http-perl (6.20-1) ... Removing libnet-ssleay-perl (1.88-3+b1) ... Removing libnss3:amd64 (2:3.61-1+deb11u3) ... Removing libnspr4:amd64 (2:4.29-1) ... Removing libpcsclite1:amd64 (1.9.1-1) ... Removing libplexus-sec-dispatcher-java (1.4-4) ... Removing libplexus-cipher-java (1.8-2) ... Removing libplexus-classworlds-java (2.6.0-1) ... Removing libplexus-component-annotations-java (2.1.0-1) ... Removing libplexus-interpolation-java (1.26-1) ... Removing libwagon-provider-api-java (3.3.4-1) ... Removing libplexus-utils2-java (3.3.0-1) ... Removing libslf4j-java (1.7.30-1) ... Removing libsnappy-java (1.1.8.3-1) ... Removing libsnappy-jni (1.1.8.3-1) ... Removing libsnappy1v5:amd64 (1.1.8-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libxz-java (1.8-2) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing netbase (6.3) ... Removing perl-openssl-defaults:amd64 (5) ... Removing ruby-minitest (5.13.0-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.3.9-1) ... Removing ruby-power-assert (1.1.7-2) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing rubygems-integration (1.18) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ttf-bitstream-vera (1.10-8.1) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libcommons-logging-java (1.2-2) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (18-1) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libhttp-message-perl (6.28-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libhttp-date-perl (6.05-1) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Removing libio-html-perl (1.004-2) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libtimedate-perl (2.3300-2) ... Removing liburi-perl (5.08-1) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 9m57.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'remove', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'ant', 'ant-optional', 'at-spi2-core', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-10', 'curl', 'cutadapt', 'cwltool', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dirmngr', 'dmsetup', 'docutils-common', 'dpkg-dev', 'dvisvgm', 'fakeroot', 'fastqc', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-liberation2', 'fonts-lmodern', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-mono', 'fonts-texgyre', 'fonts-urw-base35', 'g++-', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'ghostscript', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'hdf5-helpers', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'icu-devtools', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'java-common', 'javascript-common', 'less', 'libactivation-java', 'libaec-dev:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclone-perl', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgirepository-1.0-1:amd64', 'libgit2-1.1:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttp-parser2.9:amd64', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase25:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-filesaver', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-lunr', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoup-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-6:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenexr25:amd64', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpcg-cpp-dev', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libpdfbox-java', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsodium23:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsuperlu5:amd64', 'libsynctex2:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libucx0:amd64', 'libudunits2-0', 'libudunits2-data', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-commons-resolver1.1-java', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mocha', 'mpi-default-bin', 'multiqc', 'mysql-common', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'netpbm', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-clipboard', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'pkg-config', 'poppler-data', 'preview-latex-style', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-alabaster', 'python3-appdirs', 'python3-arcp', 'python3-argcomplete', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-babel', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-bs4', 'python3-cachecontrol', 'python3-cachetools', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cryptography', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-dropbox', 'python3-flask', 'python3-ftputil', 'python3-future', 'python3-gdal', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-google-auth', 'python3-html5lib', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-irodsclient', 'python3-isodate', 'python3-itsdangerous', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-kubernetes', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msal', 'python3-msal-extensions', 'python3-msgpack', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-mypy-extensions', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-oauthlib', 'python3-olefile', 'python3-openssl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-portalocker', 'python3-prettytable', 'python3-prov', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyasn1', 'python3-pyasn1-modules', 'python3-pybigwig', 'python3-pydot', 'python3-pygments', 'python3-pygraphviz', 'python3-pyinotify', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retrying', 'python3-roman', 'python3-rsa', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-schema-salad', 'python3-scipy', 'python3-setuptools', 'python3-shellescape', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-spectra', 'python3-sphinx', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-urllib3', 'python3-webencodings', 'python3-websocket', 'python3-werkzeug', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yappi', 'python3-yarl', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocneighbors', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biocstyle', 'r-bioc-biocviews', 'r-bioc-biostrings', 'r-bioc-bluster', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-deseq2', 'r-bioc-edger', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-glmgampoi', 'r-bioc-go.db', 'r-bioc-graph', 'r-bioc-hdf5array', 'r-bioc-hsmmsinglecell', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-matrixgenerics', 'r-bioc-monocle', 'r-bioc-org.hs.eg.db', 'r-bioc-rbgl', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-scran', 'r-bioc-scuttle', 'r-bioc-shortread', 'r-bioc-singlecellexperiment', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bh', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bookdown', 'r-cran-boot', 'r-cran-brew', 'r-cran-brio', 'r-cran-broom', 'r-cran-cachem', 'r-cran-callr', 'r-cran-caret', 'r-cran-catools', 'r-cran-cba', 'r-cran-checkmate', 'r-cran-class', 'r-cran-classint', 'r-cran-cli', 'r-cran-cliapp', 'r-cran-clipr', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-combinat', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-covr', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-credentials', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-dbplyr', 'r-cran-ddalpha', 'r-cran-ddrtree', 'r-cran-decor', 'r-cran-deldir', 'r-cran-densityclust', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-devtools', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dimred', 'r-cran-docopt', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-drr', 'r-cran-dt', 'r-cran-dygraphs', 'r-cran-dynamictreecut', 'r-cran-e1071', 'r-cran-earth', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastica', 'r-cran-fastmap', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-fnn', 'r-cran-fontbitstreamvera', 'r-cran-fontliberation', 'r-cran-fontquiver', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-freetypeharfbuzz', 'r-cran-fs', 'r-cran-fts', 'r-cran-furrr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-gdata', 'r-cran-gdtools', 'r-cran-generics', 'r-cran-geometry', 'r-cran-geosphere', 'r-cran-gert', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggthemes', 'r-cran-gh', 'r-cran-gitcreds', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gprofiler', 'r-cran-gridextra', 'r-cran-gsl', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-ini', 'r-cran-ipred', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-ks', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-linprog', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-logcondens', 'r-cran-lpsolve', 'r-cran-lubridate', 'r-cran-lwgeom', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-maptools', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mclust', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mets', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modeldata', 'r-cran-modelmetrics', 'r-cran-multicool', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-mvtnorm', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-parallelly', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-praise', 'r-cran-prettycode', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-processx', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-proxy', 'r-cran-ps', 'r-cran-purrr', 'r-cran-qlcmatrix', 'r-cran-quadprog', 'r-cran-quantmod', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r6', 'r-cran-randomfields', 'r-cran-randomfieldsutils', 'r-cran-ranger', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-raster', 'r-cran-rcmdcheck', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-rematch2', 'r-cran-remotes', 'r-cran-reshape2', 'r-cran-rex', 'r-cran-rgdal', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-rmysql', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-roxygen2', 'r-cran-rpart', 'r-cran-rpostgresql', 'r-cran-rprojroot', 'r-cran-rsample', 'r-cran-rsclient', 'r-cran-rspectra', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-rsvd', 'r-cran-rtsne', 'r-cran-runit', 'r-cran-rversions', 'r-cran-scales', 'r-cran-selectr', 'r-cran-sendmailr', 'r-cran-sessioninfo', 'r-cran-setrng', 'r-cran-sf', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-slam', 'r-cran-slider', 'r-cran-snow', 'r-cran-sodium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-sparsem', 'r-cran-sparsesvd', 'r-cran-spatial', 'r-cran-spatstat', 'r-cran-spatstat.data', 'r-cran-spatstat.utils', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-systemfonts', 'r-cran-teachingdemos', 'r-cran-tensor', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-timereg', 'r-cran-timeseries', 'r-cran-tinytex', 'r-cran-tseries', 'r-cran-ttr', 'r-cran-units', 'r-cran-usethis', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-vdiffr', 'r-cran-vgam', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-warp', 'r-cran-webutils', 'r-cran-whisker', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xopen', 'r-cran-xtable', 'r-cran-xts', 'r-cran-yaml', 'r-cran-zip', 'r-cran-zoo', 'r-doc-html', 'r-recommended', 'rake', 'readline-common', 'rna-star', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 't1utils', 'tcl', 'tcl8.6', 'teckit', 'termit', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-bibtex-extra', 'texlive-binaries', 'texlive-fonts-recommended', 'texlive-latex-base', 'texlive-latex-extra', 'texlive-latex-recommended', 'texlive-pictures', 'texlive-plain-generic', 'texlive-xetex', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'pigx-rnaseq'] 9m57.2s INFO: Running scripts post_remove 9m57.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_remove_exceptions'] 9m57.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_remove_exceptions'] 9m57.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--purge', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'ant', 'ant-optional', 'at-spi2-core', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-10', 'curl', 'cutadapt', 'cwltool', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dirmngr', 'dmsetup', 'docutils-common', 'dpkg-dev', 'dvisvgm', 'fakeroot', 'fastqc', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-liberation2', 'fonts-lmodern', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-mono', 'fonts-texgyre', 'fonts-urw-base35', 'g++', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'ghostscript', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'hdf5-helpers', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'icu-devtools', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'java-common', 'javascript-common', 'less', 'libactivation-java', 'libaec-dev:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclone-perl', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgirepository-1.0-1:amd64', 'libgit2-1.1:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttp-parser2.9:amd64', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase25:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-filesaver', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-lunr', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoup-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-6:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenexr25:amd64', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpcg-cpp-dev', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libpdfbox-java', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsodium23:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsuperlu5:amd64', 'libsynctex2:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libucx0:amd64', 'libudunits2-0', 'libudunits2-data', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-commons-resolver1.1-java', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mocha', 'mpi-default-bin', 'multiqc', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'netbase', 'netpbm', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-clipboard', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'pkg-config', 'poppler-data', 'preview-latex-style', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-alabaster', 'python3-appdirs', 'python3-arcp', 'python3-argcomplete', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-babel', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-bs4', 'python3-cachecontrol', 'python3-cachetools', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cryptography', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-dropbox', 'python3-flask', 'python3-ftputil', 'python3-future', 'python3-gdal', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-google-auth', 'python3-html5lib', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-irodsclient', 'python3-isodate', 'python3-itsdangerous', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-kubernetes', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msal', 'python3-msal-extensions', 'python3-msgpack', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-mypy-extensions', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-oauthlib', 'python3-olefile', 'python3-openssl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-portalocker', 'python3-prettytable', 'python3-prov', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyasn1', 'python3-pyasn1-modules', 'python3-pybigwig', 'python3-pydot', 'python3-pygments', 'python3-pygraphviz', 'python3-pyinotify', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retrying', 'python3-roman', 'python3-rsa', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-schema-salad', 'python3-scipy', 'python3-setuptools', 'python3-shellescape', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-spectra', 'python3-sphinx', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-urllib3', 'python3-webencodings', 'python3-websocket', 'python3-werkzeug', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yappi', 'python3-yarl', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocneighbors', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biocstyle', 'r-bioc-biocviews', 'r-bioc-biostrings', 'r-bioc-bluster', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-deseq2', 'r-bioc-edger', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-glmgampoi', 'r-bioc-go.db', 'r-bioc-graph', 'r-bioc-hdf5array', 'r-bioc-hsmmsinglecell', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-matrixgenerics', 'r-bioc-monocle', 'r-bioc-org.hs.eg.db', 'r-bioc-rbgl', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-scran', 'r-bioc-scuttle', 'r-bioc-shortread', 'r-bioc-singlecellexperiment', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bh', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bookdown', 'r-cran-boot', 'r-cran-brew', 'r-cran-brio', 'r-cran-broom', 'r-cran-cachem', 'r-cran-callr', 'r-cran-caret', 'r-cran-catools', 'r-cran-cba', 'r-cran-checkmate', 'r-cran-class', 'r-cran-classint', 'r-cran-cli', 'r-cran-cliapp', 'r-cran-clipr', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-combinat', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-covr', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-credentials', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-dbplyr', 'r-cran-ddalpha', 'r-cran-ddrtree', 'r-cran-decor', 'r-cran-deldir', 'r-cran-densityclust', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-devtools', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dimred', 'r-cran-docopt', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-drr', 'r-cran-dt', 'r-cran-dygraphs', 'r-cran-dynamictreecut', 'r-cran-e1071', 'r-cran-earth', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastica', 'r-cran-fastmap', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-fnn', 'r-cran-fontbitstreamvera', 'r-cran-fontliberation', 'r-cran-fontquiver', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-freetypeharfbuzz', 'r-cran-fs', 'r-cran-fts', 'r-cran-furrr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-gdata', 'r-cran-gdtools', 'r-cran-generics', 'r-cran-geometry', 'r-cran-geosphere', 'r-cran-gert', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggthemes', 'r-cran-gh', 'r-cran-gitcreds', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gprofiler', 'r-cran-gridextra', 'r-cran-gsl', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-ini', 'r-cran-ipred', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-ks', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-linprog', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-logcondens', 'r-cran-lpsolve', 'r-cran-lubridate', 'r-cran-lwgeom', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-maptools', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mclust', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mets', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modeldata', 'r-cran-modelmetrics', 'r-cran-multicool', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-mvtnorm', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-parallelly', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-praise', 'r-cran-prettycode', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-processx', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-proxy', 'r-cran-ps', 'r-cran-purrr', 'r-cran-qlcmatrix', 'r-cran-quadprog', 'r-cran-quantmod', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r6', 'r-cran-randomfields', 'r-cran-randomfieldsutils', 'r-cran-ranger', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-raster', 'r-cran-rcmdcheck', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-rematch2', 'r-cran-remotes', 'r-cran-reshape2', 'r-cran-rex', 'r-cran-rgdal', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-rmysql', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-roxygen2', 'r-cran-rpart', 'r-cran-rpostgresql', 'r-cran-rprojroot', 'r-cran-rsample', 'r-cran-rsclient', 'r-cran-rspectra', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-rsvd', 'r-cran-rtsne', 'r-cran-runit', 'r-cran-rversions', 'r-cran-scales', 'r-cran-selectr', 'r-cran-sendmailr', 'r-cran-sessioninfo', 'r-cran-setrng', 'r-cran-sf', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-slam', 'r-cran-slider', 'r-cran-snow', 'r-cran-sodium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-sparsem', 'r-cran-sparsesvd', 'r-cran-spatial', 'r-cran-spatstat', 'r-cran-spatstat.data', 'r-cran-spatstat.utils', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-systemfonts', 'r-cran-teachingdemos', 'r-cran-tensor', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-timereg', 'r-cran-timeseries', 'r-cran-tinytex', 'r-cran-tseries', 'r-cran-ttr', 'r-cran-units', 'r-cran-usethis', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-vdiffr', 'r-cran-vgam', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-warp', 'r-cran-webutils', 'r-cran-whisker', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xopen', 'r-cran-xtable', 'r-cran-xts', 'r-cran-yaml', 'r-cran-zip', 'r-cran-zoo', 'r-doc-html', 'r-recommended', 'rake', 'readline-common', 'rna-star', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 't1utils', 'tcl', 'tcl8.6', 'teckit', 'termit', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-bibtex-extra', 'texlive-binaries', 'texlive-fonts-recommended', 'texlive-latex-base', 'texlive-latex-extra', 'texlive-latex-recommended', 'texlive-pictures', 'texlive-plain-generic', 'texlive-xetex', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 9m59.6s DUMP: (Reading database ... 6975 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (3.38.0-1) ... dpkg: warning: ignoring request to remove alsa-topology-conf which isn't installed dpkg: warning: ignoring request to remove alsa-ucm-conf which isn't installed dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed Purging configuration files for at-spi2-core (2.38.0-4+deb11u1) ... dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove build-essential which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove bzip2-doc which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909+deb11u1) ... dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-10 which isn't installed dpkg: warning: ignoring request to remove curl which isn't installed dpkg: warning: ignoring request to remove cutadapt which isn't installed dpkg: warning: ignoring request to remove cwltool which isn't installed Purging configuration files for dbus (1.12.28-0+deb11u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Purging configuration files for dbus-user-session (1.12.28-0+deb11u1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for dirmngr (2.2.27-2+deb11u2) ... dpkg: warning: ignoring request to remove dmsetup which isn't installed Purging configuration files for docutils-common (0.16+dfsg-4) ... Purging configuration files for dpkg-dev (1.20.13) ... dpkg: warning: ignoring request to remove dvisvgm which isn't installed dpkg: warning: ignoring request to remove fakeroot which isn't installed Purging configuration files for fastqc (0.11.9+dfsg-4) ... dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-4.2) ... Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-dejavu-extra which isn't installed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed dpkg: warning: ignoring request to remove fonts-liberation2 which isn't installed Purging configuration files for fonts-lmodern (2.004.5-6.1) ... dpkg: warning: while removing fonts-lmodern, directory '/usr/share/texmf/fonts/opentype/public/lm-math' not empty so not removed dpkg: warning: while removing fonts-lmodern, directory '/usr/share/texmf/fonts/opentype/public/lm' not empty so not removed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for fonts-noto-mono (20201225-1) ... dpkg: warning: while removing fonts-noto-mono, directory '/usr/share/fonts/truetype/noto' not empty so not removed Purging configuration files for fonts-texgyre (20180621-3.1) ... dpkg: warning: while removing fonts-texgyre, directory '/usr/share/texmf/fonts/opentype/public/tex-gyre-math' not empty so not removed dpkg: warning: while removing fonts-texgyre, directory '/usr/share/texmf/fonts/opentype/public/tex-gyre' not empty so not removed Purging configuration files for fonts-urw-base35 (20200910-1) ... dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/type1/urw-base35' not empty so not removed dpkg: warning: while removing fonts-urw-base35, directory '/usr/share/fonts/opentype/urw-base35' not empty so not removed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-10 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-10 which isn't installed dpkg: warning: ignoring request to remove gdal-data which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-10 which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed dpkg: warning: ignoring request to remove gir1.2-glib-2.0 which isn't installed Purging configuration files for git (1:2.30.2-1+deb11u2) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove glib-networking which isn't installed dpkg: warning: ignoring request to remove glib-networking-common which isn't installed dpkg: warning: ignoring request to remove glib-networking-services which isn't installed dpkg: warning: ignoring request to remove gnupg which isn't installed dpkg: warning: ignoring request to remove gnupg-l10n which isn't installed dpkg: warning: ignoring request to remove gnupg-utils which isn't installed dpkg: warning: ignoring request to remove gpg which isn't installed Purging configuration files for gpg-agent (2.2.27-2+deb11u2) ... dpkg: warning: ignoring request to remove gpg-wks-client which isn't installed dpkg: warning: ignoring request to remove gpg-wks-server which isn't installed dpkg: warning: ignoring request to remove gpgconf which isn't installed dpkg: warning: ignoring request to remove gpgsm which isn't installed Purging configuration files for graphviz (2.42.2-5) ... dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.5) ... dpkg: warning: while removing gsfonts, directory '/usr/share/fonts/type1/gsfonts' not empty so not removed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed Purging configuration files for ibverbs-providers:amd64 (33.2-1) ... dpkg: warning: ignoring request to remove icu-devtools which isn't installed Purging configuration files for imagemagick (8:6.9.11.60+dfsg-1.3+deb11u2) ... Purging configuration files for imagemagick-6-common (8:6.9.11.60+dfsg-1.3+deb11u2) ... dpkg: warning: ignoring request to remove imagemagick-6.q16 which isn't installed Purging configuration files for java-common (0.72) ... Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove less which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-xs-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-merge-perl which isn't installed dpkg: warning: ignoring request to remove libann0 which isn't installed dpkg: warning: ignoring request to remove libaom0 which isn't installed dpkg: warning: ignoring request to remove libaopalliance-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libargon2-1 which isn't installed dpkg: warning: ignoring request to remove libargs4j-java which isn't installed dpkg: warning: ignoring request to remove libarmadillo10 which isn't installed dpkg: warning: ignoring request to remove libarpack2 which isn't installed dpkg: warning: ignoring request to remove libasan6 which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libassuan0 which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk-wrapper-java which isn't installed dpkg: warning: ignoring request to remove libatk-wrapper-java-jni which isn't installed dpkg: warning: ignoring 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warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost-filesystem1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-iostreams1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc-devtools which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcap2 which isn't installed dpkg: warning: ignoring request to remove libcbor0 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcdi-api-java which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcfitsio9 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcharls2 which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libcmark-gfm-extensions0 which isn't installed dpkg: warning: ignoring request to remove libcmark-gfm0 which isn't installed dpkg: warning: ignoring request to remove libcodemodel-java which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-math3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcrypt-dev which isn't installed dpkg: warning: ignoring request to remove libcryptsetup12 which isn't installed dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdap27 which isn't installed dpkg: warning: ignoring request to remove libdapclient6v5 which isn't installed dpkg: warning: ignoring request to remove libdata-dump-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d4 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevmapper1.02.1 which isn't installed dpkg: warning: ignoring request to remove libdjvulibre-text which isn't installed dpkg: warning: ignoring request to remove libdjvulibre21 which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdpkg-perl which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdtd-parser-java which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove libepsilon1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed Purging configuration files for libfakeroot:amd64 (1.25.3-1.1) ... dpkg: warning: ignoring request to remove libfastinfoset-java which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfido2-1 which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-desktopentry-perl which isn't installed dpkg: warning: ignoring request to remove libfile-fcntllock-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-mimeinfo-perl which isn't installed dpkg: warning: ignoring request to remove libfindbin-libs-perl which isn't installed dpkg: warning: ignoring request to remove libfont-afm-perl which isn't installed dpkg: warning: ignoring request to remove libfontbox-java which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfreexl1 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libfyba0 which isn't installed dpkg: warning: ignoring request to remove libgcc-10-dev which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdal28 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf-xlib-2.0-0 which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-0 which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-bin which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgeos-3.9.0 which isn't installed dpkg: warning: ignoring request to remove libgeos-c1v5 which isn't installed dpkg: warning: ignoring request to remove libgeotiff5 which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgfortran-10-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libghc-pandoc-citeproc-data which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgirepository-1.0-1 which isn't installed dpkg: warning: ignoring request to remove libgit2-1.1 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (20.3.5-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove libgsl25 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed Purging configuration files for libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... dpkg: warning: ignoring request to remove libgtk-3-bin which isn't installed Purging configuration files for libgtk-3-common (3.24.24-4+deb11u3) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed Purging configuration files for libgvc6 (2.42.2-5) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhawtjni-runtime-java which isn't installed dpkg: warning: ignoring request to remove libhdf4-0-alt which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-fortran-102 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-cpp-100 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-fortran-100 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-parser2.9 which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu-dev which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libilmbase25 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove 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which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... dpkg: warning: while removing libjs-jquery, directory '/usr/share/javascript' not empty so not removed dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-datatables-extensions which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-metadata which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-tablesorter which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-lunr which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove 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Purging configuration files for mailcap (3.69) ... dpkg: warning: ignoring request to remove make which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for mariadb-common (1:10.5.23-0+deb11u1) ... Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mesa-vulkan-drivers which isn't installed dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove mocha which isn't installed dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove multiqc which isn't installed Purging configuration files for mysql-common (5.8+1.0.7) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-9) ... Purging configuration files for netbase (6.3) ... dpkg: warning: ignoring request to remove netpbm which isn't installed dpkg: warning: ignoring request to remove node-ansi-colors which isn't installed dpkg: warning: ignoring request to remove node-ansi-regex which isn't installed dpkg: warning: ignoring request to remove node-ansi-styles which isn't installed dpkg: warning: ignoring request to remove node-anymatch which isn't installed dpkg: warning: ignoring request to remove node-argparse which isn't installed dpkg: warning: ignoring request to remove node-assert which isn't installed dpkg: warning: ignoring request to remove node-async-each which isn't installed dpkg: warning: ignoring request to remove node-balanced-match which isn't installed dpkg: warning: ignoring request to remove node-binary-extensions which isn't installed dpkg: warning: ignoring request to remove node-brace-expansion which isn't installed dpkg: warning: ignoring request to remove node-braces which isn't 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Purging configuration files for openssl (1.1.1w-0+deb11u1) ... dpkg: warning: ignoring request to remove pandoc which isn't installed dpkg: warning: ignoring request to remove pandoc-citeproc which isn't installed dpkg: warning: ignoring request to remove pandoc-data which isn't installed dpkg: warning: ignoring request to remove patch which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove pigz which isn't installed dpkg: warning: ignoring request to remove pinentry-curses which isn't installed Purging configuration files for pkg-config (0.29.2-1) ... Purging configuration files for poppler-data (0.4.10-1) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed Purging configuration files for preview-latex-style (12.2-1) ... dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.3.4-1) ... 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python3-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-openssl which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-plotly which isn't installed dpkg: warning: ignoring request to remove python3-portalocker which isn't installed dpkg: warning: ignoring request to remove python3-prettytable which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed Purging configuration files for python3-pulp (1.6.0+dfsg1-5) ... dpkg: warning: ignoring request to remove python3-py2bit which isn't installed dpkg: 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request to remove python3-rdflib-jsonld which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-requests-oauthlib which isn't installed dpkg: warning: ignoring request to remove python3-retrying which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-rsa which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml.clib which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-shellescape which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-snowballstemmer which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sparqlwrapper which isn't installed dpkg: warning: ignoring request to remove python3-spectra which isn't installed dpkg: warning: ignoring request to remove python3-sphinx which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-uamqp which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-websocket which isn't installed dpkg: warning: ignoring request to remove python3-werkzeug which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yappi which isn't installed dpkg: warning: ignoring request to remove python3-yarl which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for r-base-core (4.0.4-1) ... dpkg: warning: ignoring request to remove r-base-dev which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotate which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-beachmat which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocneighbors which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocsingular which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocstyle which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocviews which isn't installed dpkg: warning: ignoring request to remove 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r-bioc-glmgampoi which isn't installed dpkg: warning: ignoring request to remove r-bioc-go.db which isn't installed dpkg: warning: ignoring request to remove r-bioc-graph which isn't installed dpkg: warning: ignoring request to remove r-bioc-hdf5array which isn't installed dpkg: warning: ignoring request to remove r-bioc-hsmmsinglecell which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-limma which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-monocle which isn't installed dpkg: warning: ignoring request to remove r-bioc-org.hs.eg.db which isn't installed dpkg: warning: ignoring request to remove r-bioc-rbgl which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhdf5 which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-scran which isn't installed dpkg: warning: ignoring request to remove r-bioc-scuttle which isn't installed dpkg: warning: ignoring request to remove r-bioc-shortread which isn't installed dpkg: warning: ignoring request to remove r-bioc-singlecellexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsematrixstats which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-tximport which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-backports which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-base64url which isn't installed dpkg: warning: ignoring request to remove r-cran-batchjobs which isn't installed dpkg: warning: ignoring request to remove r-cran-batchtools which isn't installed dpkg: warning: ignoring request to remove r-cran-bbmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-biocmanager which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-bookdown which isn't installed dpkg: warning: ignoring request to remove r-cran-boot which isn't installed dpkg: warning: ignoring request to remove r-cran-brew which isn't installed dpkg: warning: ignoring request to remove r-cran-brio which isn't installed dpkg: warning: ignoring request to remove r-cran-broom which isn't installed dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed dpkg: warning: ignoring request to remove r-cran-callr which isn't installed dpkg: warning: ignoring request to remove r-cran-caret which isn't installed dpkg: warning: ignoring request to remove r-cran-catools which isn't installed dpkg: warning: ignoring request to remove r-cran-cba which isn't installed dpkg: warning: ignoring request to remove r-cran-checkmate which isn't installed dpkg: warning: ignoring request to remove r-cran-class which isn't installed dpkg: warning: ignoring request to remove r-cran-classint which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-cliapp which isn't installed dpkg: warning: ignoring request to remove r-cran-clipr which isn't installed dpkg: warning: ignoring request to remove r-cran-cluster which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-colourpicker which isn't installed dpkg: warning: ignoring request to remove r-cran-combinat which isn't installed dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed dpkg: warning: ignoring request to remove r-cran-conquer which isn't installed dpkg: warning: ignoring request to remove r-cran-corrplot which isn't installed dpkg: warning: ignoring request to remove r-cran-covr which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-credentials which isn't installed dpkg: warning: ignoring request to remove r-cran-crosstalk which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-cvst which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dbitest which isn't installed dpkg: warning: ignoring request to remove r-cran-dbplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-ddalpha which isn't installed dpkg: warning: ignoring request to remove r-cran-ddrtree which isn't installed dpkg: warning: ignoring request to remove r-cran-decor which isn't installed dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed dpkg: warning: ignoring request to remove r-cran-densityclust which isn't installed dpkg: warning: ignoring request to remove r-cran-deoptimr which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-devtools which isn't installed dpkg: warning: ignoring request to remove r-cran-diffobj which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dimred which isn't installed dpkg: warning: ignoring request to remove r-cran-docopt which isn't installed dpkg: warning: ignoring request to remove r-cran-domc which isn't installed dpkg: warning: ignoring request to remove r-cran-doparallel which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-dqrng which isn't installed dpkg: warning: ignoring request to remove r-cran-drr which isn't installed Purging configuration files for r-cran-dt (0.17+dfsg-3) ... dpkg: warning: ignoring request to remove r-cran-dygraphs which isn't installed dpkg: warning: ignoring request to remove r-cran-dynamictreecut which isn't installed dpkg: warning: ignoring request to remove r-cran-e1071 which isn't installed dpkg: warning: ignoring request to remove r-cran-earth which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-fastica which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmatch which isn't installed dpkg: warning: ignoring request to remove r-cran-filehash which isn't installed dpkg: warning: ignoring request to remove r-cran-fnn which isn't installed dpkg: warning: ignoring request to remove r-cran-fontbitstreamvera which isn't installed dpkg: warning: ignoring request to remove r-cran-fontliberation which isn't installed dpkg: warning: ignoring request to remove r-cran-fontquiver which isn't installed dpkg: warning: ignoring request to remove r-cran-foreach which isn't installed dpkg: warning: ignoring request to remove r-cran-foreign which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-formula which isn't installed dpkg: warning: ignoring request to remove r-cran-freetypeharfbuzz which isn't installed dpkg: warning: ignoring request to remove r-cran-fs which isn't installed dpkg: warning: ignoring request to remove r-cran-fts which isn't installed dpkg: warning: ignoring request to remove r-cran-furrr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-future which isn't installed dpkg: warning: ignoring request to remove r-cran-gdata which isn't installed dpkg: warning: ignoring request to remove r-cran-gdtools which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-geometry which isn't installed dpkg: warning: ignoring request to remove r-cran-geosphere which isn't installed dpkg: warning: ignoring request to remove r-cran-gert which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-ggrepel which isn't installed dpkg: warning: ignoring request to remove r-cran-ggthemes which isn't installed dpkg: warning: ignoring request to remove r-cran-gh which isn't installed dpkg: warning: ignoring request to remove r-cran-gitcreds which isn't installed dpkg: warning: ignoring request to remove r-cran-globals which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-goftest which isn't installed dpkg: warning: ignoring request to remove r-cran-gower which isn't installed dpkg: warning: ignoring request to remove r-cran-gplots which isn't installed dpkg: warning: ignoring request to remove r-cran-gprofiler which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gsl which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-gtools which isn't installed dpkg: warning: ignoring request to remove r-cran-hexbin which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-igraph which isn't installed dpkg: warning: ignoring request to remove r-cran-ini which isn't installed dpkg: warning: ignoring request to remove r-cran-ipred which isn't installed dpkg: warning: ignoring request to remove r-cran-irlba which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-iterators which isn't installed dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-kernlab which isn't installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-ks which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lava which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-linprog which isn't installed dpkg: warning: ignoring request to remove r-cran-listenv which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-lme4 which isn't installed dpkg: warning: ignoring request to remove r-cran-locfit which isn't installed dpkg: warning: ignoring request to remove r-cran-logcondens which isn't installed dpkg: warning: ignoring request to remove r-cran-lpsolve which isn't installed dpkg: warning: ignoring request to remove r-cran-lubridate which isn't installed dpkg: warning: ignoring request to remove r-cran-lwgeom which isn't installed dpkg: warning: ignoring request to remove r-cran-magic which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mapproj which isn't installed dpkg: warning: ignoring request to remove r-cran-maps which isn't installed dpkg: warning: ignoring request to remove r-cran-maptools which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixmodels which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mclust which isn't installed dpkg: warning: ignoring request to remove r-cran-mda which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mets which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-miniui which isn't installed dpkg: warning: ignoring request to remove r-cran-minqa which isn't installed dpkg: warning: ignoring request to remove r-cran-mlbench which isn't installed dpkg: warning: ignoring request to remove r-cran-mlmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-mockery which isn't installed dpkg: warning: ignoring request to remove r-cran-mockr which isn't installed dpkg: warning: ignoring request to remove r-cran-modeldata which isn't installed dpkg: warning: ignoring request to remove r-cran-modelmetrics which isn't installed dpkg: warning: ignoring request to remove r-cran-multicool which isn't installed dpkg: warning: ignoring request to remove r-cran-multicore which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-mvtnorm which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-nloptr which isn't installed dpkg: warning: ignoring request to remove r-cran-nnet which isn't installed dpkg: warning: ignoring request to remove r-cran-numderiv which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-parallelly which isn't installed dpkg: warning: ignoring request to remove r-cran-pheatmap which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgbuild which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgload which isn't installed dpkg: warning: ignoring request to remove r-cran-plogr which isn't installed dpkg: warning: ignoring request to remove r-cran-plotly which isn't installed dpkg: warning: ignoring request to remove r-cran-plotmo which isn't installed dpkg: warning: ignoring request to remove r-cran-plotrix which isn't installed dpkg: warning: ignoring request to remove r-cran-pls which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-polyclip which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettycode which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-proc which isn't installed dpkg: warning: ignoring request to remove r-cran-processx which isn't installed dpkg: warning: ignoring request to remove r-cran-prodlim which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-proxy which isn't installed dpkg: warning: ignoring request to remove r-cran-ps which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-qlcmatrix which isn't installed dpkg: warning: ignoring request to remove r-cran-quadprog which isn't installed dpkg: warning: ignoring request to remove r-cran-quantmod which isn't installed dpkg: warning: ignoring request to remove r-cran-quantreg which isn't installed dpkg: warning: ignoring request to remove r-cran-r.methodss3 which isn't installed dpkg: warning: ignoring request to remove r-cran-r.oo which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-randomfields which isn't installed dpkg: warning: ignoring request to remove r-cran-randomfieldsutils which isn't installed dpkg: warning: ignoring request to remove r-cran-ranger which isn't installed dpkg: warning: ignoring request to remove r-cran-rann which isn't installed dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed dpkg: warning: ignoring request to remove r-cran-raster which isn't installed dpkg: warning: ignoring request to remove r-cran-rcmdcheck which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpphnsw which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppprogress which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpproll which isn't installed Purging configuration files for r-cran-rcurl (1.98-1.2-1+b1) ... dpkg: warning: ignoring request to remove r-cran-recipes which isn't installed dpkg: warning: ignoring request to remove r-cran-rematch2 which isn't installed dpkg: warning: ignoring request to remove r-cran-remotes which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rex which isn't installed dpkg: warning: ignoring request to remove r-cran-rgdal which isn't installed dpkg: warning: ignoring request to remove r-cran-rjson which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed Purging configuration files for r-cran-rmarkdown (2.6+dfsg-1) ... dpkg: warning: ignoring request to remove r-cran-rmpi which isn't installed dpkg: warning: ignoring request to remove r-cran-rmysql which isn't installed dpkg: warning: ignoring request to remove r-cran-robustbase which isn't installed dpkg: warning: ignoring request to remove r-cran-rocr which isn't installed dpkg: warning: ignoring request to remove r-cran-roxygen2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rpart which isn't installed dpkg: warning: ignoring request to remove r-cran-rpostgresql which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rsample which isn't installed dpkg: warning: ignoring request to remove r-cran-rsclient which isn't installed dpkg: warning: ignoring request to remove r-cran-rspectra which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-rsvd which isn't installed dpkg: warning: ignoring request to remove r-cran-rtsne which isn't installed dpkg: warning: ignoring request to remove r-cran-runit which isn't installed dpkg: warning: ignoring request to remove r-cran-rversions which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-selectr which isn't installed dpkg: warning: ignoring request to remove r-cran-sendmailr which isn't installed dpkg: warning: ignoring request to remove r-cran-sessioninfo which isn't installed dpkg: warning: ignoring request to remove r-cran-setrng which isn't installed dpkg: warning: ignoring request to remove r-cran-sf which isn't installed dpkg: warning: ignoring request to remove r-cran-sfsmisc which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-shinyjs which isn't installed dpkg: warning: ignoring request to remove r-cran-sitmo which isn't installed dpkg: warning: ignoring request to remove r-cran-slam which isn't installed dpkg: warning: ignoring request to remove r-cran-slider which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sodium which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-sp which isn't installed dpkg: warning: ignoring request to remove r-cran-sparsem which isn't installed dpkg: warning: ignoring request to remove r-cran-sparsesvd which isn't installed dpkg: warning: ignoring request to remove r-cran-spatial which isn't installed dpkg: warning: ignoring request to remove r-cran-spatstat which isn't installed dpkg: warning: ignoring request to remove r-cran-spatstat.data which isn't installed dpkg: warning: ignoring request to remove r-cran-spatstat.utils which isn't installed dpkg: warning: ignoring request to remove r-cran-squarem which isn't installed dpkg: warning: ignoring request to remove r-cran-statmod which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-systemfonts which isn't installed dpkg: warning: ignoring request to remove r-cran-teachingdemos which isn't installed dpkg: warning: ignoring request to remove r-cran-tensor which isn't installed dpkg: warning: ignoring request to remove r-cran-testit which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tikzdevice which isn't installed dpkg: warning: ignoring request to remove r-cran-timedate which isn't installed dpkg: warning: ignoring request to remove r-cran-timereg which isn't installed dpkg: warning: ignoring request to remove r-cran-timeseries which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-tseries which isn't installed dpkg: warning: ignoring request to remove r-cran-ttr which isn't installed dpkg: warning: ignoring request to remove r-cran-units which isn't installed dpkg: warning: ignoring request to remove r-cran-usethis which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-vdiffr which isn't installed dpkg: warning: ignoring request to remove r-cran-vgam which isn't installed dpkg: warning: ignoring request to remove r-cran-viridis which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-waldo which isn't installed dpkg: warning: ignoring request to remove r-cran-warp which isn't installed dpkg: warning: ignoring request to remove r-cran-webutils which isn't installed dpkg: warning: ignoring request to remove r-cran-whisker which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed dpkg: warning: ignoring request to remove r-cran-xopen which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-xts which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed dpkg: warning: ignoring request to remove r-cran-zip which isn't installed dpkg: warning: ignoring request to remove r-cran-zoo which isn't installed dpkg: warning: ignoring request to remove r-doc-html which isn't installed dpkg: warning: ignoring request to remove r-recommended which isn't installed dpkg: warning: ignoring request to remove rake which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove rna-star which isn't installed dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-rubygems which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.7 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove salmon which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.30) ... Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove snakemake which isn't installed dpkg: warning: ignoring request to remove sphinx-common which isn't installed dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for systemd (247.3-7+deb11u4) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed Purging configuration files for systemd-timesyncd (247.3-7+deb11u4) ... dpkg: warning: ignoring request to remove t1utils which isn't installed dpkg: warning: ignoring request to remove tcl which isn't installed Purging configuration files for tcl8.6 (8.6.11+dfsg-1) ... dpkg: warning: ignoring request to remove teckit which isn't installed Purging configuration files for termit (3.1-1) ... Purging configuration files for tex-common (6.16) ... Purging configuration files for tex-gyre (20180621-3.1) ... dpkg: warning: while removing tex-gyre, directory '/usr/share/fonts/X11/Type1' not empty so not removed Purging configuration files for texlive-base (2020.20210202-3) ... Purging configuration files for texlive-bibtex-extra (2020.20210202-3) ... dpkg: warning: ignoring request to remove texlive-binaries which isn't installed Purging configuration files for texlive-fonts-recommended (2020.20210202-3) ... dpkg: warning: while removing texlive-fonts-recommended, directory '/usr/share/fonts/type1/texlive-fonts-recommended' not empty so not removed Purging configuration files for texlive-latex-base (2020.20210202-3) ... Purging configuration files for texlive-latex-extra (2020.20210202-3) ... Purging configuration files for texlive-latex-recommended (2020.20210202-3) ... Purging configuration files for texlive-pictures (2020.20210202-3) ... Purging configuration files for texlive-plain-generic (2020.20210202-3) ... Purging configuration files for texlive-xetex (2020.20210202-3) ... Purging configuration files for tipa (2:1.3-20.1) ... dpkg: warning: ignoring request to remove tk which isn't installed Purging configuration files for tk8.6 (8.6.11-2) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove trim-galore which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... Purging configuration files for x11-common (1:7.7+22) ... Purging configuration files for x11-utils (7.7+5) ... Purging configuration files for x11-xserver-utils (7.7+8) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... dpkg: warning: while removing xfonts-utils, directory '/usr/share/fonts/X11/util' not empty so not removed dpkg: warning: ignoring request to remove xkb-data which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 9m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--purge', 'adwaita-icon-theme', 'alsa-topology-conf', 'alsa-ucm-conf', 'ant', 'ant-optional', 'at-spi2-core', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'build-essential', 'bzip2', 'bzip2-doc', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-10', 'curl', 'cutadapt', 'cwltool', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'dirmngr', 'dmsetup', 'docutils-common', 'dpkg-dev', 'dvisvgm', 'fakeroot', 'fastqc', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-extra', 'fonts-droid-fallback', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-liberation2', 'fonts-lmodern', 'fonts-lyx', 'fonts-mathjax', 'fonts-noto-mono', 'fonts-texgyre', 'fonts-urw-base35', 'g++', 'g++-10', 'gcc', 'gcc-10', 'gdal-data', 'gfortran', 'gfortran-10', 'ghostscript', 'gir1.2-glib-2.0:amd64', 'git', 'git-man', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnupg', 'gnupg-l10n', 'gnupg-utils', 'gpg', 'gpg-agent', 'gpg-wks-client', 'gpg-wks-server', 'gpgconf', 'gpgsm', 'graphviz', 'gsettings-desktop-schemas', 'gsfonts', 'gtk-update-icon-cache', 'hdf5-helpers', 'hicolor-icon-theme', 'ibverbs-providers:amd64', 'icu-devtools', 'imagemagick', 'imagemagick-6-common', 'imagemagick-6.q16', 'java-common', 'javascript-common', 'less', 'libactivation-java', 'libaec-dev:amd64', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-merge-perl', 'libann0', 'libaom0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libargs4j-java', 'libarmadillo10', 'libarpack2:amd64', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libassuan0:amd64', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk-wrapper-java', 'libatk-wrapper-java-jni:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatomic1:amd64', 'libatspi2.0-0:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libbinutils:amd64', 'libblas-dev:amd64', 'libblas3:amd64', 'libblosc1', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libbz2-dev:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc-devtools', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcbor0:amd64', 'libcc1-0:amd64', 'libcdi-api-java', 'libcdt5:amd64', 'libcfitsio9:amd64', 'libcgraph6:amd64', 'libcharls2:amd64', 'libclone-perl', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcolord2:amd64', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcryptsetup12:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap27:amd64', 'libdapclient6v5:amd64', 'libdata-dump-perl', 'libdatrie1:amd64', 'libdav1d4:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdjvulibre-text', 'libdjvulibre21:amd64', 'libdom4j-java', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libepoxy0:amd64', 'libepsilon1:amd64', 'liberror-perl', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libexpat1:amd64', 'libfabric1', 'libfakeroot:amd64', 'libfastinfoset-java', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfile-basedir-perl', 'libfile-desktopentry-perl', 'libfile-fcntllock-perl', 'libfile-listing-perl', 'libfile-mimeinfo-perl', 'libfindbin-libs-perl', 'libfont-afm-perl', 'libfontbox-java', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-10-dev:amd64', 'libgd3:amd64', 'libgdal28', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-bin', 'libgdk-pixbuf2.0-common', 'libgeos-3.9.0:amd64', 'libgeos-c1v5:amd64', 'libgeotiff5:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran-10-dev:amd64', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgirepository-1.0-1:amd64', 'libgit2-1.1:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraphite2-3:amd64', 'libgs9:amd64', 'libgs9-common', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libgtk-3-0:amd64', 'libgtk-3-bin', 'libgtk-3-common', 'libgts-0.7-5:amd64', 'libgts-bin', 'libguava-java', 'libguice-java', 'libgvc6', 'libgvpr2:amd64', 'libharfbuzz0b:amd64', 'libhawtjni-runtime-java', 'libhdf4-0-alt', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-dev', 'libhdf5-fortran-102:amd64', 'libhdf5-hl-100:amd64', 'libhdf5-hl-cpp-100:amd64', 'libhdf5-hl-fortran-100:amd64', 'libheif1:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhttp-parser2.9:amd64', 'libhttpclient-java', 'libhttpcore-java', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu-dev:amd64', 'libicu67:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libilmbase25:amd64', 'libimagequant0:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-stringy-perl', 'libip4tc2:amd64', 'libipc-system-simple-perl', 'libisl23:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjansi-java', 'libjansi-native-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-filesaver', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-lunr', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoup-java', 'libjsr305-java', 'libjxr-tools', 'libjxr0:amd64', 'libkmlbase1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmod2:amd64', 'libkpathsea6:amd64', 'libksba8:amd64', 'liblab-gamut1:amd64', 'liblapack-dev:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm11:amd64', 'liblmdb0:amd64', 'liblocale-gettext-perl', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'liblzma-dev:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmagickcore-6.q16-6:amd64', 'libmagickcore-6.q16-6-extra:amd64', 'libmagickwand-6.q16-6:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmd0:amd64', 'libminizip1:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncurses-dev:amd64', 'libncurses5-dev:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-dbus-perl', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf18:amd64', 'libnetpbm10', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnlopt0:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnpth0:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss-systemd:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi4.1', 'libopenexr25:amd64', 'libopenjp2-7:amd64', 'libopenmpi3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4:amd64', 'libpcg-cpp-dev', 'libpciaccess0:amd64', 'libpcre16-3:amd64', 'libpcre2-16-0:amd64', 'libpcre2-32-0:amd64', 'libpcre2-dev:amd64', 'libpcre2-posix2:amd64', 'libpcre3-dev:amd64', 'libpcre32-3:amd64', 'libpcrecpp0v5:amd64', 'libpcsclite1:amd64', 'libpdfbox-java', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpmix2:amd64', 'libpng-dev:amd64', 'libpng-tools', 'libpng16-16:amd64', 'libpoppler102:amd64', 'libpq5:amd64', 'libproj19:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libptexenc1:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull8.0:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline-dev:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librest-0.7-0:amd64', 'librngom-java', 'librsvg2-2:amd64', 'librsvg2-common:amd64', 'librtmp1:amd64', 'librttopo1:amd64', 'libruby2.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsodium23:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libspatialite7:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsuperlu5:amd64', 'libsynctex2:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libteckit0:amd64', 'libtexlua53:amd64', 'libtexluajit2:amd64', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libucx0:amd64', 'libudunits2-0', 'libudunits2-data', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libvte-2.91-0:amd64', 'libvte-2.91-common', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwmf0.2-7:amd64', 'libwoff1:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-protocol-perl', 'libx11-xcb1:amd64', 'libx265-192:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxkbfile1:amd64', 'libxml-commons-resolver1.1-java', 'libxml-parser-perl:amd64', 'libxml-twig-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxnvctrl0:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxv1:amd64', 'libxxf86dga1:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'libzzip-0-13:amd64', 'linux-libc-dev:amd64', 'littler', 'lmodern', 'mailcap', 'make', 'manpages', 'manpages-dev', 'mariadb-common', 'media-types', 'mesa-vulkan-drivers:amd64', 'mime-support', 'mocha', 'mpi-default-bin', 'multiqc', 'mysql-common', 'ncbi-blast+', 'ncbi-data', 'netbase', 'netpbm', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-clipboard', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'nodejs-doc', 'notification-daemon', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'patch', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'pigz', 'pinentry-curses', 'pkg-config', 'poppler-data', 'preview-latex-style', 'proj-bin', 'proj-data', 'publicsuffix', 'python-babel-localedata', 'python-biopython-doc', 'python-matplotlib-data', 'python3', 'python3-adal', 'python3-aiohttp', 'python3-alabaster', 'python3-appdirs', 'python3-arcp', 'python3-argcomplete', 'python3-async-timeout', 'python3-attr', 'python3-avro', 'python3-azure', 'python3-azure-storage', 'python3-babel', 'python3-biopython', 'python3-blinker', 'python3-boto3', 'python3-botocore', 'python3-bs4', 'python3-cachecontrol', 'python3-cachetools', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cryptography', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-dropbox', 'python3-flask', 'python3-ftputil', 'python3-future', 'python3-gdal', 'python3-gi', 'python3-git', 'python3-gitdb', 'python3-google-auth', 'python3-html5lib', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-irodsclient', 'python3-isodate', 'python3-itsdangerous', 'python3-jinja2', 'python3-jmespath', 'python3-jsonschema', 'python3-jupyter-core', 'python3-jwt', 'python3-kiwisolver', 'python3-kubernetes', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-mistune', 'python3-more-itertools', 'python3-msal', 'python3-msal-extensions', 'python3-msgpack', 'python3-msrest', 'python3-msrestazure', 'python3-multidict', 'python3-mypy-extensions', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-oauthlib', 'python3-olefile', 'python3-openssl', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-portalocker', 'python3-prettytable', 'python3-prov', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyasn1', 'python3-pyasn1-modules', 'python3-pybigwig', 'python3-pydot', 'python3-pygments', 'python3-pygraphviz', 'python3-pyinotify', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-requests-oauthlib', 'python3-retrying', 'python3-roman', 'python3-rsa', 'python3-ruamel.yaml', 'python3-ruamel.yaml.clib:amd64', 'python3-s3transfer', 'python3-schema-salad', 'python3-scipy', 'python3-setuptools', 'python3-shellescape', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-spectra', 'python3-sphinx', 'python3-tk:amd64', 'python3-toposort', 'python3-traitlets', 'python3-typing-extensions', 'python3-tz', 'python3-uamqp', 'python3-urllib3', 'python3-webencodings', 'python3-websocket', 'python3-werkzeug', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yappi', 'python3-yarl', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-base-dev', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-beachmat', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocneighbors', 'r-bioc-biocparallel', 'r-bioc-biocsingular', 'r-bioc-biocstyle', 'r-bioc-biocviews', 'r-bioc-biostrings', 'r-bioc-bluster', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-deseq2', 'r-bioc-edger', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-glmgampoi', 'r-bioc-go.db', 'r-bioc-graph', 'r-bioc-hdf5array', 'r-bioc-hsmmsinglecell', 'r-bioc-iranges', 'r-bioc-limma', 'r-bioc-matrixgenerics', 'r-bioc-monocle', 'r-bioc-org.hs.eg.db', 'r-bioc-rbgl', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-scran', 'r-bioc-scuttle', 'r-bioc-shortread', 'r-bioc-singlecellexperiment', 'r-bioc-sparsematrixstats', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-base64url', 'r-cran-batchjobs', 'r-cran-batchtools', 'r-cran-bbmisc', 'r-cran-bh', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bookdown', 'r-cran-boot', 'r-cran-brew', 'r-cran-brio', 'r-cran-broom', 'r-cran-cachem', 'r-cran-callr', 'r-cran-caret', 'r-cran-catools', 'r-cran-cba', 'r-cran-checkmate', 'r-cran-class', 'r-cran-classint', 'r-cran-cli', 'r-cran-cliapp', 'r-cran-clipr', 'r-cran-cluster', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-combinat', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-covr', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-credentials', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-cvst', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-dbitest', 'r-cran-dbplyr', 'r-cran-ddalpha', 'r-cran-ddrtree', 'r-cran-decor', 'r-cran-deldir', 'r-cran-densityclust', 'r-cran-deoptimr', 'r-cran-desc', 'r-cran-devtools', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dimred', 'r-cran-docopt', 'r-cran-domc', 'r-cran-doparallel', 'r-cran-dplyr', 'r-cran-dqrng', 'r-cran-drr', 'r-cran-dt', 'r-cran-dygraphs', 'r-cran-dynamictreecut', 'r-cran-e1071', 'r-cran-earth', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastica', 'r-cran-fastmap', 'r-cran-fastmatch', 'r-cran-filehash', 'r-cran-fnn', 'r-cran-fontbitstreamvera', 'r-cran-fontliberation', 'r-cran-fontquiver', 'r-cran-foreach', 'r-cran-foreign', 'r-cran-formatr', 'r-cran-formula', 'r-cran-freetypeharfbuzz', 'r-cran-fs', 'r-cran-fts', 'r-cran-furrr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-gdata', 'r-cran-gdtools', 'r-cran-generics', 'r-cran-geometry', 'r-cran-geosphere', 'r-cran-gert', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-ggthemes', 'r-cran-gh', 'r-cran-gitcreds', 'r-cran-globals', 'r-cran-glue', 'r-cran-goftest', 'r-cran-gower', 'r-cran-gplots', 'r-cran-gprofiler', 'r-cran-gridextra', 'r-cran-gsl', 'r-cran-gtable', 'r-cran-gtools', 'r-cran-hexbin', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-hwriter', 'r-cran-igraph', 'r-cran-ini', 'r-cran-ipred', 'r-cran-irlba', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-kernlab', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-ks', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-linprog', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-locfit', 'r-cran-logcondens', 'r-cran-lpsolve', 'r-cran-lubridate', 'r-cran-lwgeom', 'r-cran-magic', 'r-cran-magrittr', 'r-cran-mapproj', 'r-cran-maps', 'r-cran-maptools', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mclust', 'r-cran-mda', 'r-cran-memoise', 'r-cran-mets', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-mlbench', 'r-cran-mlmetrics', 'r-cran-mockery', 'r-cran-mockr', 'r-cran-modeldata', 'r-cran-modelmetrics', 'r-cran-multicool', 'r-cran-multicore', 'r-cran-munsell', 'r-cran-mvtnorm', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-parallelly', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plotmo', 'r-cran-plotrix', 'r-cran-pls', 'r-cran-plyr', 'r-cran-png', 'r-cran-polyclip', 'r-cran-praise', 'r-cran-prettycode', 'r-cran-prettyunits', 'r-cran-proc', 'r-cran-processx', 'r-cran-prodlim', 'r-cran-progress', 'r-cran-promises', 'r-cran-proxy', 'r-cran-ps', 'r-cran-purrr', 'r-cran-qlcmatrix', 'r-cran-quadprog', 'r-cran-quantmod', 'r-cran-quantreg', 'r-cran-r.methodss3', 'r-cran-r.oo', 'r-cran-r6', 'r-cran-randomfields', 'r-cran-randomfieldsutils', 'r-cran-ranger', 'r-cran-rann', 'r-cran-rappdirs', 'r-cran-raster', 'r-cran-rcmdcheck', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcpphnsw', 'r-cran-rcppprogress', 'r-cran-rcpproll', 'r-cran-rcurl', 'r-cran-recipes', 'r-cran-rematch2', 'r-cran-remotes', 'r-cran-reshape2', 'r-cran-rex', 'r-cran-rgdal', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rmpi', 'r-cran-rmysql', 'r-cran-robustbase', 'r-cran-rocr', 'r-cran-roxygen2', 'r-cran-rpart', 'r-cran-rpostgresql', 'r-cran-rprojroot', 'r-cran-rsample', 'r-cran-rsclient', 'r-cran-rspectra', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-rsvd', 'r-cran-rtsne', 'r-cran-runit', 'r-cran-rversions', 'r-cran-scales', 'r-cran-selectr', 'r-cran-sendmailr', 'r-cran-sessioninfo', 'r-cran-setrng', 'r-cran-sf', 'r-cran-sfsmisc', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-sitmo', 'r-cran-slam', 'r-cran-slider', 'r-cran-snow', 'r-cran-sodium', 'r-cran-sourcetools', 'r-cran-sp', 'r-cran-sparsem', 'r-cran-sparsesvd', 'r-cran-spatial', 'r-cran-spatstat', 'r-cran-spatstat.data', 'r-cran-spatstat.utils', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-systemfonts', 'r-cran-teachingdemos', 'r-cran-tensor', 'r-cran-testit', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tikzdevice', 'r-cran-timedate', 'r-cran-timereg', 'r-cran-timeseries', 'r-cran-tinytex', 'r-cran-tseries', 'r-cran-ttr', 'r-cran-units', 'r-cran-usethis', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-vdiffr', 'r-cran-vgam', 'r-cran-viridis', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-warp', 'r-cran-webutils', 'r-cran-whisker', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xopen', 'r-cran-xtable', 'r-cran-xts', 'r-cran-yaml', 'r-cran-zip', 'r-cran-zoo', 'r-doc-html', 'r-recommended', 'rake', 'readline-common', 'rna-star', 'ruby', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-rubygems', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.7', 'rubygems-integration', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'systemd', 'systemd-sysv', 'systemd-timesyncd', 't1utils', 'tcl', 'tcl8.6', 'teckit', 'termit', 'tex-common', 'tex-gyre', 'texlive-base', 'texlive-bibtex-extra', 'texlive-binaries', 'texlive-fonts-recommended', 'texlive-latex-base', 'texlive-latex-extra', 'texlive-latex-recommended', 'texlive-pictures', 'texlive-plain-generic', 'texlive-xetex', 'tipa', 'tk', 'tk8.6', 'tk8.6-blt2.5', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'x11-utils', 'x11-xserver-utils', 'xauth', 'xdg-user-dirs', 'xdg-utils', 'xfonts-encodings', 'xfonts-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 9m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--purge', 'pigx-rnaseq'] 9m59.6s DUMP: dpkg: warning: ignoring request to remove pigx-rnaseq which isn't installed 9m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--purge', 'pigx-rnaseq'] 9m59.6s INFO: Running scripts post_purge 9m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_purge_exceptions'] 9m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_purge_exceptions'] 9m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--purge', '--pending'] 9m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--purge', '--pending'] 9m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--remove', '--pending'] 9m59.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg', '--remove', '--pending'] 9m59.6s INFO: Running scripts post_test 9m59.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_test_exceptions'] 9m59.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'tmp/scripts/post_test_exceptions'] 9m59.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 10m0.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 10m1.3s DEBUG: No broken symlinks as far as we can find. 10m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-divert', '--list'] 10m1.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 10m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'dpkg-divert', '--list'] 10m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'clean'] 10m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgdowyqep', 'apt-get', 'clean'] 10m1.6s DEBUG: Recording chroot state 10m2.4s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: texlive-fonts-recommended, tex-gyre, lmodern, xfonts-utils, xfonts-encodings, gsfonts, fonts-noto-mono, fonts-mathjax, fonts-lyx, fonts-font-awesome, fonts-dejavu-extra, fonts-glyphicons-halflings, poppler-data, fonts-urw-base35, fonts-liberation2, fonts-liberation, ttf-bitstream-vera, fonts-dejavu-core, fonts-lato, fonts-droid-fallback /usr/share/fonts/.uuid not owned /usr/share/fonts/X11/ owned by: tex-gyre, lmodern, xfonts-utils, xfonts-encodings /usr/share/fonts/X11/.uuid not owned /usr/share/fonts/X11/Type1/ owned by: tex-gyre, lmodern /usr/share/fonts/X11/Type1/.uuid not owned /usr/share/fonts/X11/encodings/ owned by: xfonts-encodings /usr/share/fonts/X11/encodings/.uuid not owned /usr/share/fonts/X11/encodings/large/ owned by: xfonts-encodings /usr/share/fonts/X11/encodings/large/.uuid not owned /usr/share/fonts/X11/util/ owned by: xfonts-utils /usr/share/fonts/X11/util/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome, fonts-urw-base35 /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/opentype/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/opentype/urw-base35/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-noto-mono, fonts-lyx, fonts-font-awesome, fonts-dejavu-extra, fonts-glyphicons-halflings, fonts-liberation2, fonts-liberation, ttf-bitstream-vera, fonts-dejavu-core, fonts-lato, fonts-droid-fallback /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-extra, fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/liberation2/ owned by: fonts-liberation2 /usr/share/fonts/truetype/liberation2/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned /usr/share/fonts/type1/ owned by: texlive-fonts-recommended, gsfonts, fonts-urw-base35 /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/gsfonts/ owned by: gsfonts /usr/share/fonts/type1/gsfonts/.uuid not owned /usr/share/fonts/type1/texlive-fonts-recommended/ owned by: texlive-fonts-recommended /usr/share/fonts/type1/texlive-fonts-recommended/.uuid not owned /usr/share/fonts/type1/urw-base35/ owned by: fonts-urw-base35 /usr/share/fonts/type1/urw-base35/.uuid not owned /usr/share/javascript/ owned by: node-html5shiv, node-clipboard, node-esprima, libjs-util, libjs-twitter-bootstrap-datepicker, libjs-sprintf-js, libjs-sphinxdoc, libjs-underscore, libjs-prettify, libjs-modernizr, libjs-mathjax, libjs-lunr, libjs-json, libjs-jquery-ui, libjs-jquery-tablesorter, libjs-jquery-selectize.js, libjs-microplugin.js, libjs-sifter.js, libjs-jquery-metadata, libjs-jquery-datatables-extensions, libjs-jquery-datatables, libjs-jquery, libjs-inherits, libjs-highlight.js, libjs-filesaver, libjs-es5-shim, libjs-d3-format, libjs-d3, javascript-common, fonts-mathjax, fonts-font-awesome, libjs-bootstrap, node-normalize.css /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned /usr/share/texmf/ owned by: tipa, tex-gyre, texlive-base, preview-latex-style, lmodern, r-base-core, fonts-lmodern, tex-common, fonts-texgyre /usr/share/texmf/fonts/ owned by: tipa, tex-gyre, lmodern, fonts-lmodern, fonts-texgyre /usr/share/texmf/fonts/opentype/ owned by: fonts-lmodern, fonts-texgyre /usr/share/texmf/fonts/opentype/public/ owned by: fonts-lmodern, fonts-texgyre /usr/share/texmf/fonts/opentype/public/lm-math/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm-math/.uuid not owned /usr/share/texmf/fonts/opentype/public/lm/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm/.uuid not owned /usr/share/texmf/fonts/opentype/public/tex-gyre-math/ owned by: fonts-texgyre /usr/share/texmf/fonts/opentype/public/tex-gyre-math/.uuid not owned /usr/share/texmf/fonts/opentype/public/tex-gyre/ owned by: fonts-texgyre /usr/share/texmf/fonts/opentype/public/tex-gyre/.uuid not owned 10m2.5s INFO: PASS: Installation and purging test. 10m2.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/shm'] 10m3.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/shm'] 10m3.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/console'] 10m3.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/console'] 10m3.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/ptmx'] 10m3.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/ptmx'] 10m3.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/pts'] 10m3.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/dev/pts'] 10m3.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/proc'] 10m3.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgdowyqep/proc'] 10m3.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 10m3.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgdowyqep'] 10m3.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpgdowyqep 10m3.2s INFO: PASS: All tests. 10m3.2s INFO: piuparts run ends. ret=0 End: 2024-04-20 15:43:05 GMT