Start: 2024-02-12 13:14:21 GMT Package: circlator Version: 1.5.6-5 Installed-Size: 10531 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: fastaq (>= 3.12.1), python3-openpyxl, python3-pymummer, python3-pysam, python3:any, prodigal, bwa (>= 0.7.12), mummer, samtools, spades, canu Description: circularize genome assemblies Homepage: http://sanger-pathogens.github.io/circlator/ Description-md5: cf235cf3121c5ca347cea31d93662299 Tag: biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::python, role::program, science::calculation, works-with::biological-sequence, works-with::file Section: science Priority: optional Filename: pool/main/c/circlator/circlator_1.5.6-5_amd64.deb Size: 4474268 MD5sum: 8458e5322c722e59049922228c5ccd45 SHA256: da39ab860a3b30e692a3d76acf1c952a1f41460d4d14cdcb8417cd9d483c4d33 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt circlator=1.5.6-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt circlator=1.5.6-5 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5mb5hy5q 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5mb5hy5q 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp5mb5hy5q/tmp/scripts/ 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5mb5hy5q/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'update'] 0m6.0s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8068 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6236 kB] Fetched 14.4 MB in 3s (4674 kB/s) Reading package lists... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'update'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', '-yf', 'dist-upgrade'] 0m9.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libgnutls30 perl-base tar tzdata 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7841 kB of archives. After this operation, 44.0 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 base-files amd64 11.1+deb11u9 [70.2 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 perl-base amd64 5.32.1-4+deb11u3 [1628 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 tar amd64 1.34+dfsg-1+deb11u1 [847 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libc6 amd64 2.31-13+deb11u8 [2823 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libc-bin amd64 2.31-13+deb11u8 [829 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.7.1-5+deb11u4 [1340 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 tzdata all 2024a-0+deb11u1 [304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7841 kB in 0s (63.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../base-files_11.1+deb11u9_amd64.deb ... Unpacking base-files (11.1+deb11u9) over (11.1+deb11u8) ... Setting up base-files (11.1+deb11u9) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Setting up perl-base (5.32.1-4+deb11u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1+deb11u1_amd64.deb ... Unpacking tar (1.34+dfsg-1+deb11u1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u8_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc6:amd64 (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u8_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc-bin (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u4) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tzdata_2024a-0+deb11u1_all.deb ... Unpacking tzdata (2024a-0+deb11u1) over (2021a-1+deb11u10) ... Setting up tzdata (2024a-0+deb11u1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 12 13:14:30 UTC 2024. Universal Time is now: Mon Feb 12 13:14:30 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', '-yf', 'dist-upgrade'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.4s DUMP: 29fcf27583012b383113cec2bf757015 - 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.4s INFO: Running scripts post_setup 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_dummy_users'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_dummy_users'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_forbid_home'] 0m10.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_forbid_home'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_minimize'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_minimize'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_zz_backports'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_setup_zz_backports'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'clean'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'clean'] 0m10.9s DEBUG: Recording chroot state 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.4s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-divert', '--list'] 0m11.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-divert', '--list'] 0m11.4s INFO: Running scripts is_testable 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/is_testable_uninstallable'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/is_testable_uninstallable'] 0m11.4s INFO: apt-cache does not know about any of the requested packages 0m11.4s INFO: Running scripts pre_test 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_test_exceptions'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_test_exceptions'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_test_root_password'] 0m11.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_test_root_password'] 0m11.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 0m11.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 0m12.5s DEBUG: No broken symlinks as far as we can find. 0m12.5s INFO: Running scripts pre_install 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_database-server'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_database-server'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_exceptions'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_exceptions'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_extras'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_extras'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_log_alternatives'] 0m12.6s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_install_log_alternatives'] 0m12.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 0m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 0m13.5s DEBUG: No broken symlinks as far as we can find. 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-cache', 'policy'] 0m14.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-cache', 'policy'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-cache', 'policy', 'circlator'] 0m14.4s DUMP: circlator: Installed: (none) Candidate: 1.5.6-5 Version table: 1.5.6-5 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-cache', 'policy', 'circlator'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', '-y', 'install', 'circlator=1.5.6-5'] 1m11.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme aglfn bamtools binfmt-support bwa ca-certificates ca-certificates-java canu dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre-headless dmsetup fastaq fastjar fontconfig fontconfig-config fonts-dejavu-core gawk glib-networking glib-networking-common glib-networking-services gnuplot gnuplot-data gnuplot-qt gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme jaligner jarwrapper java-common libapache-pom-java libapparmor1 libargon2-1 libasound2 libasound2-data libatinject-jsr330-api-java libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcap2 libcolord2 libcommons-compress-java libcommons-parent-java libcryptsetup12 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 libevdev2 libexpat1 libfastutil-java libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf-xlib-2.0-0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0 libgtk-3-common libguava-java libgudev-1.0-0 libharfbuzz0b libhat-trie0 libhts3 libice6 libicu67 libinput-bin libinput10 libip4tc2 libjbig0 libjpeg62-turbo libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp24 libjsr305-java libkmod2 liblcms2-2 libldap-2.4-2 libllvm11 liblua5.4-0 libmd0 libmd4c0 libmpdec3 libmpfr6 libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libnlopt0 libnotify4 libnspr4 libnss3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcsclite1 libperl5.32 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libproxy1v5 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libreadline8 librest-0.7-0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libsqlite3-0 libssh2-1 libssw-java libssw0 libthai-data libthai0 libtiff5 libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp6 libwxbase3.0-0v5 libwxgtk3.0-gtk3-0v5 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxxf86vm1 libyaml-0-2 libz3-4 media-types mhap mummer openjdk-11-jre-headless openssl perl perl-modules-5.32 procps prodigal python3 python3-distutils python3-et-xmlfile python3-jdcal python3-joblib python3-lib2to3 python3-lxml python3-minimal python3-openpyxl python3-pkg-resources python3-pymummer python3-pysam python3-yaml python3.9 python3.9-minimal readline-common samtools sensible-utils shared-mime-info spades systemd systemd-sysv ucf x11-common xkb-data Suggested packages: pbgenomicconsensus nanopolish default-jre gawk-doc gnuplot-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc colord libxz-java cups-common libgd-tools gdbm-l10n gvfs libjsr305-java-doc liblcms2-utils pciutils pcscd qt5-image-formats-plugins qtwayland5 lm-sensors libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3-lxml-dbg python-lxml-doc python3-setuptools python3.9-venv python3.9-doc binutils readline-doc cwltool systemd-container policykit-1 Recommended packages: librsvg2-common alsa-ucm-conf alsa-topology-conf at-spi2-core libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgtk-3-bin libldap-common libgpm2 notification-daemon publicsuffix qttranslations5-l10n qt5-gtk-platformtheme libsasl2-modules mesa-vulkan-drivers | vulkan-icd libwacom-bin netbase psmisc python3-numpy python3-pytest python3-simplejson python3-psutil python3-bs4 python3-html5lib python3-pil systemd-timesyncd | time-daemon libnss-systemd The following NEW packages will be installed: adwaita-icon-theme aglfn bamtools binfmt-support bwa ca-certificates ca-certificates-java canu circlator dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre-headless dmsetup fastaq fastjar fontconfig fontconfig-config fonts-dejavu-core gawk glib-networking glib-networking-common glib-networking-services gnuplot gnuplot-data gnuplot-qt gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme jaligner jarwrapper java-common libapache-pom-java libapparmor1 libargon2-1 libasound2 libasound2-data libatinject-jsr330-api-java libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcap2 libcolord2 libcommons-compress-java libcommons-parent-java libcryptsetup12 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 libevdev2 libexpat1 libfastutil-java libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf-xlib-2.0-0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0 libgtk-3-common libguava-java libgudev-1.0-0 libharfbuzz0b libhat-trie0 libhts3 libice6 libicu67 libinput-bin libinput10 libip4tc2 libjbig0 libjpeg62-turbo libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp24 libjsr305-java libkmod2 liblcms2-2 libldap-2.4-2 libllvm11 liblua5.4-0 libmd0 libmd4c0 libmpdec3 libmpfr6 libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libnlopt0 libnotify4 libnspr4 libnss3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcsclite1 libperl5.32 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libproxy1v5 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libreadline8 librest-0.7-0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libsqlite3-0 libssh2-1 libssw-java libssw0 libthai-data libthai0 libtiff5 libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp6 libwxbase3.0-0v5 libwxgtk3.0-gtk3-0v5 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxxf86vm1 libyaml-0-2 libz3-4 media-types mhap mummer openjdk-11-jre-headless openssl perl perl-modules-5.32 procps prodigal python3 python3-distutils python3-et-xmlfile python3-jdcal python3-joblib python3-lib2to3 python3-lxml python3-minimal python3-openpyxl python3-pkg-resources python3-pymummer python3-pysam python3-yaml python3.9 python3.9-minimal readline-common samtools sensible-utils shared-mime-info spades systemd systemd-sysv ucf x11-common xkb-data 0 upgraded, 263 newly installed, 0 to remove and 0 not upgraded. Need to get 200 MB of archives. After this operation, 751 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libapparmor1 amd64 2.13.6-10 [99.3 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.6 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 dmsetup amd64 2:1.02.175-2.1 [92.1 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2.1 [143 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libjson-c5 amd64 0.15-2+deb11u1 [42.9 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libcryptsetup12 amd64 2:2.3.7-1+deb11u1 [248 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libip4tc2 amd64 1.8.7-1 [34.6 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libkmod2 amd64 28-1 [55.6 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 systemd amd64 247.3-7+deb11u4 [4502 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 systemd-sysv amd64 247.3-7+deb11u4 [114 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 dbus amd64 1.12.28-0+deb11u1 [244 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libmpfr6 amd64 4.1.0-3 [2012 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 gawk amd64 1:5.1.0-1 [605 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libdouble-conversion3 amd64 3.1.5-6.1 [41.0 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libpcre2-16-0 amd64 10.36-2+deb11u1 [232 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libqt5core5a amd64 5.15.2+dfsg-9 [1822 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libwayland-server0 amd64 1.18.0-2~exp1.1 [34.4 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libgbm1 amd64 20.3.5-1 [73.5 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libwayland-client0 amd64 1.18.0-2~exp1.1 [26.9 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1+deb11u2 [204 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:62 http://deb.debian.org/debian bullseye/main amd64 libegl-mesa0 amd64 20.3.5-1 [141 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libegl1 amd64 1.3.2-1 [34.8 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libevdev2 amd64 1.11.0+dfsg-1 [34.0 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libmtdev1 amd64 1.1.6-1 [23.0 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libgudev-1.0-0 amd64 234-1 [14.7 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libwacom-common all 1.8-2 [49.7 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libwacom2 amd64 1.8-2 [21.9 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libinput-bin amd64 1.16.4-3 [23.0 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libinput10 amd64 1.16.4-3 [118 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libmd4c0 amd64 0.4.7-2 [43.6 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libqt5dbus5 amd64 5.15.2+dfsg-9 [228 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libqt5network5 amd64 5.15.2+dfsg-9 [658 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libxcb-image0 amd64 0.4.0-1+b3 [24.3 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libxcb-randr0 amd64 1.14-3 [113 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libxcb-shape0 amd64 1.14-3 [102 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libxcb-xinerama0 amd64 1.14-3 [101 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libxcb-xinput0 amd64 1.14-3 [126 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libxcb-xkb1 amd64 1.14-3 [126 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 xkb-data all 2.29-2 [655 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libxkbcommon0 amd64 1.0.3-2 [101 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libxkbcommon-x11-0 amd64 1.0.3-2 [16.6 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libqt5gui5 amd64 5.15.2+dfsg-9 [3320 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libqt5widgets5 amd64 5.15.2+dfsg-9 [2349 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libqt5svg5 amd64 5.15.2-3 [132 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 libpam-systemd amd64 247.3-7+deb11u4 [283 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u1 [147 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 gtk-update-icon-cache amd64 3.24.24-4+deb11u3 [88.4 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 adwaita-icon-theme all 3.38.0-1 [10.9 MB] Get:146 http://deb.debian.org/debian bullseye/main amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.5 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-9 [158 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 bamtools amd64 2.5.1+dfsg-9 [183 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 binfmt-support amd64 2.2.1-1+deb11u1 [66.8 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.22+7-1~deb11u1 [38.2 MB] Get:165 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libfilesys-df-perl amd64 0.92-6+b6 [12.6 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 fastjar amd64 2:0.98-7 [80.1 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 jarwrapper all 0.78 [21.8 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get:172 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 libfastutil-java all 8.4.4-1 [16.2 MB] Get:175 http://deb.debian.org/debian bullseye/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:176 http://deb.debian.org/debian bullseye/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 libguava-java all 29.0-6 [2419 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 jaligner all 1.0+dfsg-7 [136 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 libssw-java amd64 1.1-13 [16.7 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 mhap all 2.1.3+dfsg-3 [160 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 gnuplot-data all 5.4.1+dfsg1-1+deb11u1 [87.5 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 liblua5.4-0 amd64 5.4.2-2 [136 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 libqt5printsupport5 amd64 5.15.2+dfsg-9 [222 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 libwxbase3.0-0v5 amd64 3.0.5.1+dfsg-2 [1090 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-xlib-2.0-0 amd64 2.40.2-2 [47.9 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-0 amd64 2.40.2-2 [14.1 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 libatk1.0-data all 2.36.0-2 [149 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 libatk1.0-0 amd64 2.36.0-2 [52.2 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 libatspi2.0-0 amd64 2.38.0-4+deb11u1 [72.4 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 libatk-bridge2.0-0 amd64 2.38.0-1 [64.6 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 libcairo-gobject2 amd64 1.16.0-5 [125 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 libcolord2 amd64 1.4.5-3 [144 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 libepoxy0 amd64 1.5.5-1 [193 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 libjson-glib-1.0-common all 1.6.2-1 [56.9 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 libjson-glib-1.0-0 amd64 1.6.2-1 [65.4 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 libproxy1v5 amd64 0.4.17-1 [59.5 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 glib-networking-common all 2.66.0-2 [68.1 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 glib-networking-services amd64 2.66.0-2 [17.5 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 dbus-user-session amd64 1.12.28-0+deb11u1 [100 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 libdconf1 amd64 0.38.0-2 [43.5 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 dconf-service amd64 0.38.0-2 [37.4 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 dconf-gsettings-backend amd64 0.38.0-2 [30.6 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 gsettings-desktop-schemas all 3.38.0-2 [588 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 glib-networking amd64 2.66.0-2 [67.6 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 libsoup2.4-1 amd64 2.72.0-2 [280 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 libsoup-gnome2.4-1 amd64 2.72.0-2 [22.2 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 librest-0.7-0 amd64 0.8.1-1.1 [33.8 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 libwayland-cursor0 amd64 1.18.0-2~exp1.1 [14.6 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 libwayland-egl1 amd64 1.18.0-2~exp1.1 [8448 B] Get:222 http://deb.debian.org/debian bullseye/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 libxcursor1 amd64 1:1.2.0-2 [37.3 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-common all 3.24.24-4+deb11u3 [3757 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 libgtk-3-0 amd64 3.24.24-4+deb11u3 [2716 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 libnotify4 amd64 0.7.9-3 [23.7 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 libwxgtk3.0-gtk3-0v5 amd64 3.0.5.1+dfsg-2 [4494 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 gnuplot-qt amd64 5.4.1+dfsg1-1+deb11u1 [1077 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 gnuplot all 5.4.1+dfsg1-1+deb11u1 [21.2 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 canu amd64 2.0+dfsg-1 [1256 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 fastaq all 3.17.0-3 [47.8 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 python3-et-xmlfile all 1.0.1-2.1 [9180 B] Get:246 http://deb.debian.org/debian bullseye/main amd64 python3-jdcal all 1.0-1.3 [7904 B] Get:247 http://deb.debian.org/debian bullseye/main amd64 libxslt1.1 amd64 1.1.34-4+deb11u1 [240 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 python3-lxml amd64 4.6.3+dfsg-0.1+deb11u1 [1093 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 python3-openpyxl all 3.0.3-1 [159 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 mummer amd64 3.23+dfsg-7 [664 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 python3-pymummer all 0.11.0-2 [11.3 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 prodigal amd64 1:2.6.3-4 [695 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 libhat-trie0 amd64 0.1.2-2 [11.8 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 libnlopt0 amd64 2.7.0-4+b2 [172 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:261 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 spades amd64 3.13.1+dfsg-2+b2 [4777 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 circlator amd64 1.5.6-5 [4474 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 200 MB in 8s (25.0 MB/s) Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6673 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.13.6-10_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.6-10) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../1-libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Selecting previously unselected package libargon2-1:amd64. Preparing to unpack .../2-libargon2-1_0~20171227-0.2_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.2) ... Selecting previously unselected package dmsetup. Preparing to unpack .../3-dmsetup_2%3a1.02.175-2.1_amd64.deb ... Unpacking dmsetup (2:1.02.175-2.1) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../4-libdevmapper1.02.1_2%3a1.02.175-2.1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.175-2.1) ... Selecting previously unselected package libjson-c5:amd64. Preparing to unpack .../5-libjson-c5_0.15-2+deb11u1_amd64.deb ... Unpacking libjson-c5:amd64 (0.15-2+deb11u1) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../6-libcryptsetup12_2%3a2.3.7-1+deb11u1_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.3.7-1+deb11u1) ... Selecting previously unselected package libip4tc2:amd64. Preparing to unpack .../7-libip4tc2_1.8.7-1_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.7-1) ... Selecting previously unselected package libkmod2:amd64. 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Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up dmsetup (2:1.02.175-2.1) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7530 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_247.3-7+deb11u4_amd64.deb ... Unpacking systemd-sysv (247.3-7+deb11u4) ... 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Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../07-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../08-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package libmpfr6:amd64. Preparing to unpack .../09-libmpfr6_4.1.0-3_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.0-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../10-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../11-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../12-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Setting up libmpfr6:amd64 (4.1.0-3) ... Setting up readline-common (8.1-1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9622 files and directories currently installed.) Preparing to unpack .../00-gawk_1%3a5.1.0-1_amd64.deb ... Unpacking gawk (1:5.1.0-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../01-libglib2.0-0_2.66.8-1+deb11u1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../02-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../03-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../04-shared-mime-info_2.0-1_amd64.deb ... Unpacking shared-mime-info (2.0-1) ... Selecting previously unselected package libdouble-conversion3:amd64. Preparing to unpack .../05-libdouble-conversion3_3.1.5-6.1_amd64.deb ... Unpacking libdouble-conversion3:amd64 (3.1.5-6.1) ... Selecting previously unselected package libpcre2-16-0:amd64. 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Unpacking libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../24-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../25-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../26-libbsd0_0.11.3-1+deb11u1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../27-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../28-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../29-libx11-data_2%3a1.7.2-1+deb11u2_all.deb ... 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Selecting previously unselected package spades. Preparing to unpack .../132-spades_3.13.1+dfsg-2+b2_amd64.deb ... Unpacking spades (3.13.1+dfsg-2+b2) ... Selecting previously unselected package circlator. Preparing to unpack .../133-circlator_1.5.6-5_amd64.deb ... Unpacking circlator (1.5.6-5) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up fastjar (2:0.98-7) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Setting up libfastutil-java (8.4.4-1) ... Setting up libwayland-server0:amd64 (1.18.0-2~exp1.1) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up systemd-sysv (247.3-7+deb11u4) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libdouble-conversion3:amd64 (3.1.5-6.1) ... Setting up libproxy1v5:amd64 (0.4.17-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.72) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up gawk (1:5.1.0-1) ... Setting up prodigal (1:2.6.3-4) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Setting up bwa (0.7.17-6+b1) ... Setting up libglvnd0:amd64 (1.3.2-1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Setting up x11-common (1:7.7+22) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up xkb-data (2.29-2) ... Setting up libnlopt0:amd64 (2.7.0-4+b2) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libpcre2-16-0:amd64 (10.36-2+deb11u1) ... Setting up libcolord2:amd64 (1.4.5-3) ... Setting up libssw-java (1.1-13) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libdconf1:amd64 (0.38.0-2) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libhat-trie0:amd64 (0.1.2-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libepoxy0:amd64 (1.5.5-1) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up aglfn (1.7+git20191031.4036a9c-2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5+deb11u2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Setting up dbus (1.12.28-0+deb11u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up binfmt-support (2.2.1-1+deb11u1) ... Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /lib/systemd/system/binfmt-support.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libglapi-mesa:amd64 (20.3.5-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libmtdev1:amd64 (1.1.6-1) ... Setting up libvulkan1:amd64 (1.2.162.0-1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libatk1.0-data (2.36.0-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up bamtools (2.5.1+dfsg-9) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpam-systemd:amd64 (247.3-7+deb11u4) ... Setting up libmd4c0:amd64 (0.4.7-2) ... Setting up liblua5.4-0:amd64 (5.4.2-2) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libwxbase3.0-0v5:amd64 (3.0.5.1+dfsg-2) ... Setting up libjson-glib-1.0-common (1.6.2-1) ... Setting up libatk1.0-0:amd64 (2.36.0-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libwayland-egl1:amd64 (1.18.0-2~exp1.1) ... Setting up glib-networking-common (2.66.0-2) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up libevdev2:amd64 (1.11.0+dfsg-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libgudev-1.0-0:amd64 (234-1) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libwacom-common (1.8-2) ... Setting up libxkbcommon0:amd64 (1.0.3-2) ... Setting up libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Setting up glib-networking-services (2.66.0-2) ... Setting up gnuplot-data (5.4.1+dfsg1-1+deb11u1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libxcb-xinput0:amd64 (1.14-3) ... Setting up jarwrapper (0.78) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libcommons-parent-java (43-1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libxcb-shape0:amd64 (1.14-3) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-util1:amd64 (0.4.0-1+b1) ... Setting up libjson-glib-1.0-0:amd64 (1.6.2-1) ... Setting up libxcb-xkb1:amd64 (1.14-3) ... Setting up libxcb-image0:amd64 (0.4.0-1+b3) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up dbus-user-session (1.12.28-0+deb11u1) ... Setting up libxcb-xinerama0:amd64 (1.14-3) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up shared-mime-info (2.0-1) ... Setting up libxkbcommon-x11-0:amd64 (1.0.3-2) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libqt5core5a:amd64 (5.15.2+dfsg-9) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up libqt5dbus5:amd64 (5.15.2+dfsg-9) ... Setting up libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ... Setting up libxcb-randr0:amd64 (1.14-3) ... Setting up procps (2:3.3.17-5) ... Setting up libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Setting up libwacom2:amd64 (1.8-2) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up python3.9 (3.9.2-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up gtk-update-icon-cache (3.24.24-4+deb11u3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libgdk-pixbuf-xlib-2.0-0:amd64 (2.40.2-2) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.20-1) ... Setting up libgbm1:amd64 (20.3.5-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up dconf-service (0.38.0-2) ... Setting up python3 (3.9.2-3) ... Setting up libatspi2.0-0:amd64 (2.38.0-4+deb11u1) ... Setting up libqt5network5:amd64 (5.15.2+dfsg-9) ... Setting up samtools (1.11-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libinput-bin (1.16.4-3) ... Setting up libatk-bridge2.0-0:amd64 (2.38.0-1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libegl-mesa0:amd64 (20.3.5-1) ... Setting up adwaita-icon-theme (3.38.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libnotify4:amd64 (0.7.9-3) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.40.2-2) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Setting up libegl1:amd64 (1.3.2-1) ... Setting up mummer (3.23+dfsg-7) ... Setting up python3-et-xmlfile (1.0.1-2.1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up libinput10:amd64 (1.16.4-3) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up dconf-gsettings-backend:amd64 (0.38.0-2) ... Setting up python3-jdcal (1.0-1.3) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up libxcursor1:amd64 (1:1.2.0-2) ... Setting up libfilesys-df-perl (0.92-6+b6) ... Setting up fastaq (3.17.0-3) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up python3-yaml (5.3.1-5) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up python3-pymummer (0.11.0-2) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up python3-openpyxl (3.0.3-1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up spades (3.13.1+dfsg-2+b2) ... Setting up libcairo-gobject2:amd64 (1.16.0-5) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up libgtk-3-common (3.24.24-4+deb11u3) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up gsettings-desktop-schemas (3.38.0-2) ... Setting up libqt5gui5:amd64 (5.15.2+dfsg-9) ... Setting up libqt5widgets5:amd64 (5.15.2+dfsg-9) ... Setting up libqt5printsupport5:amd64 (5.15.2+dfsg-9) ... Setting up glib-networking:amd64 (2.66.0-2) ... Setting up libsoup2.4-1:amd64 (2.72.0-2) ... Setting up libqt5svg5:amd64 (5.15.2-3) ... Setting up libsoup-gnome2.4-1:amd64 (2.72.0-2) ... Setting up librest-0.7-0:amd64 (0.8.1-1.1) ... Setting up libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Setting up libwxgtk3.0-gtk3-0v5:amd64 (3.0.5.1+dfsg-2) ... Setting up gnuplot-qt (5.4.1+dfsg1-1+deb11u1) ... update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode Setting up gnuplot (5.4.1+dfsg1-1+deb11u1) ... Setting up ca-certificates-java (20190909+deb11u1) ... '/etc/java-11-openjdk/security/java.security.dpkg-new' -> '/etc/java-11-openjdk/security/java.security' head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up default-jre-headless (2:1.11-72) ... Setting up jaligner (1.0+dfsg-7) ... Setting up mhap (2.1.3+dfsg-3) ... Setting up canu (2.0+dfsg-1) ... Setting up circlator (1.5.6-5) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 1m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', '-y', 'install', 'circlator=1.5.6-5'] 1m11.6s INFO: Running scripts post_install 1m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_install_exceptions'] 1m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_install_exceptions'] 1m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_install_log_alternatives'] 1m11.7s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=fastjar: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --quiet --install /usr/bin/jar jar /usr/bin/fastjar 100 --slave /usr/share/man/man1/jar.1.gz jar.1.gz /usr/share/man/man1/fastjar.1.gz LOG-ALTERNATIVES: dpkg=gawk: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --quiet --install /usr/bin/awk awk /usr/bin/gawk 10 --slave /usr/share/man/man1/awk.1.gz awk.1.gz /usr/share/man/man1/gawk.1.gz --slave /usr/bin/nawk nawk /usr/bin/gawk --slave /usr/share/man/man1/nawk.1.gz nawk.1.gz /usr/share/man/man1/gawk.1.gz LOG-ALTERNATIVES: dpkg=procps: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --remove w /usr/bin/w.procps LOG-ALTERNATIVES: dpkg=perl: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=adwaita-icon-theme: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/share/icons/default/index.theme x-cursor-theme /usr/share/icons/Adwaita/cursor.theme 90 LOG-ALTERNATIVES: dpkg=gnuplot-qt: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --remove gnuplot4 /usr/bin/gnuplot4-qt LOG-ALTERNATIVES: dpkg=gnuplot-qt: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/gnuplot gnuplot /usr/bin/gnuplot-qt 100 --slave /usr/share/man/man1/gnuplot.1.gz gnuplot.1.gz /usr/share/man/man1/gnuplot-qt.1.gz --slave /usr/share/gnuplot/gnuplot.gih gnuplot.gih /usr/share/gnuplot/gnuplot-qt.gih LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-11-openjdk-amd64/bin/java 1111 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/jjs jjs /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs 1111 --slave /usr/share/man/man1/jjs.1.gz jjs.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/jjs.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool 1111 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/rmid rmid /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid 1111 --slave /usr/share/man/man1/rmid.1.gz rmid.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/rmid.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry 1111 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/pack200 pack200 /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 1111 --slave /usr/share/man/man1/pack200.1.gz pack200.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/pack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/unpack200 unpack200 /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 1111 --slave /usr/share/man/man1/unpack200.1.gz unpack200.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/unpack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=circlator=1.5.6-5: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec 1111 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-11-openjdk-amd64/lib/jar.binfmt 1m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_install_log_alternatives'] 1m11.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 1m12.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 1m15.1s ERROR: WARN: Broken symlinks: /usr/lib/jvm/java-11-openjdk-amd64/lib/security/blacklisted.certs -> /etc/java-11-openjdk/security/blacklisted.certs (openjdk-11-jre-headless:amd64) /usr/lib/x86_64-linux-gnu/qt-default/qtchooser/default.conf -> ../../../../share/qtchooser/qt5-x86_64-linux-gnu.conf (libqt5core5a:amd64) 1m15.2s INFO: /bin converted to /usr/bin by /usr merge 1m15.2s INFO: /lib converted to /usr/lib by /usr merge 1m15.2s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m15.2s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m15.2s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m15.2s INFO: /lib/modprobe.d converted to /usr/lib/modprobe.d by /usr merge 1m15.2s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m15.2s INFO: /lib/systemd/network converted to /usr/lib/systemd/network by /usr merge 1m15.2s INFO: /lib/systemd/system-generators converted to /usr/lib/systemd/system-generators by /usr merge 1m15.2s INFO: /lib/systemd/system-preset converted to /usr/lib/systemd/system-preset by /usr merge 1m15.2s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m15.2s INFO: /lib/systemd/system/getty.target.wants converted to /usr/lib/systemd/system/getty.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/graphical.target.wants converted to /usr/lib/systemd/system/graphical.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/initrd-root-device.target.wants converted to /usr/lib/systemd/system/initrd-root-device.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/rc-local.service.d converted to /usr/lib/systemd/system/rc-local.service.d by /usr merge 1m15.2s INFO: /lib/systemd/system/rescue.target.wants converted to /usr/lib/systemd/system/rescue.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/sysinit.target.wants converted to /usr/lib/systemd/system/sysinit.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/systemd-localed.service.d converted to /usr/lib/systemd/system/systemd-localed.service.d by /usr merge 1m15.2s INFO: /lib/systemd/system/timers.target.wants converted to /usr/lib/systemd/system/timers.target.wants by /usr merge 1m15.2s INFO: /lib/systemd/system/user-.slice.d converted to /usr/lib/systemd/system/user-.slice.d by /usr merge 1m15.2s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m15.2s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m15.2s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m15.2s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m15.2s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m15.2s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m15.2s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m15.2s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m15.2s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m15.2s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m15.2s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m15.2s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m15.2s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m15.2s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m15.2s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m15.2s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m15.2s INFO: /lib/udev/hwdb.d converted to /usr/lib/udev/hwdb.d by /usr merge 1m15.2s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m15.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m15.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m15.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m15.2s INFO: /sbin converted to /usr/sbin by /usr merge 1m16.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', '-ac', '--ignore-obsolete'] 1m20.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', '-ac', '--ignore-obsolete'] 1m20.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.7s DUMP: 0.15.6 1m20.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.7s INFO: Running adequate version 0.15.6 now. 1m20.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'circlator'] 1m20.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'circlator'] 1m20.8s INFO: Running scripts pre_remove 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_exceptions'] 1m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/pre_remove_exceptions'] 1m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m31.1s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed adwaita-icon-theme adwaita-icon-theme 3.38.0-1 install ok installed aglfn aglfn 1.7+git20191031.4036a9c-2 install ok installed apt apt 2.2.4 install ok installed bamtools bamtools 2.5.1+dfsg-9 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed binfmt-support binfmt-support 2.2.1-1+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed bwa bwa 0.7.17-6+b1 install ok installed ca-certificates ca-certificates 20210119 install ok installed ca-certificates-java ca-certificates-java 20190909+deb11u1 install ok installed canu canu 2.0+dfsg-1 install ok installed circlator circlator 1.5.6-5 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed dbus dbus 1.12.28-0+deb11u1 install ok installed dbus-user-session dbus-user-session 1.12.28-0+deb11u1 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 0.38.0-2 install ok installed dconf-service dconf-service 0.38.0-2 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed diffutils diffutils 1:3.7-5 install ok installed dmsetup dmsetup 2:1.02.175-2.1 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed fastaq fastaq 3.17.0-3 install ok installed fastjar fastjar 2:0.98-7 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gawk gawk 1:5.1.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed glib-networking:amd64 glib-networking 2.66.0-2 install ok installed glib-networking-common glib-networking-common 2.66.0-2 install ok installed glib-networking-services glib-networking-services 2.66.0-2 install ok installed gnuplot gnuplot 5.4.1+dfsg1-1+deb11u1 install ok installed gnuplot-data gnuplot-data 5.4.1+dfsg1-1+deb11u1 install ok installed gnuplot-qt gnuplot-qt 5.4.1+dfsg1-1+deb11u1 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 3.38.0-2 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.24-4+deb11u3 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed jaligner jaligner 1.0+dfsg-7 install ok installed jarwrapper jarwrapper 0.78 install ok installed java-common java-common 0.72 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapache-pom-java libapache-pom-java 18-1 install ok installed libapparmor1:amd64 libapparmor1 2.13.6-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libargon2-1:amd64 libargon2-1 0~20171227-0.2 install ok installed libasound2:amd64 libasound2 1.2.4-1.1 install ok installed libasound2-data libasound2-data 1.2.4-1.1 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatk-bridge2.0-0:amd64 libatk-bridge2.0-0 2.38.0-1 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.36.0-2 install ok installed libatk1.0-data libatk1.0-data 2.36.0-2 install ok installed libatspi2.0-0:amd64 libatspi2.0-0 2.38.0-4+deb11u1 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-5+deb11u2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-5+deb11u2 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-5+deb11u2 install ok installed libbamtools2.5.1:amd64 libbamtools2.5.1 2.5.1+dfsg-9 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.16.0-5 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcolord2:amd64 libcolord2 1.4.5-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcommons-compress-java libcommons-compress-java 1.20-1 install ok installed libcommons-parent-java libcommons-parent-java 43-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcryptsetup12:amd64 libcryptsetup12 2:2.3.7-1+deb11u1 install ok installed libcups2:amd64 libcups2 2.3.3op2-3+deb11u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+deb11u11 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.28-0+deb11u1 install ok installed libdconf1:amd64 libdconf1 0.38.0-2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libdevmapper1.02.1:amd64 libdevmapper1.02.1 2:1.02.175-2.1 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.1.5-6.1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.104-1 install ok installed libdrm-common libdrm-common 2.4.104-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.104-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.104-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.104-1 install ok installed libdrm2:amd64 libdrm2 2.4.104-1 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libegl-mesa0:amd64 libegl-mesa0 20.3.5-1 install ok installed libegl1:amd64 libegl1 1.3.2-1 install ok installed libelf1:amd64 libelf1 0.183-1 install ok installed libepoxy0:amd64 libepoxy0 1.5.5-1 install ok installed libevdev2:amd64 libevdev2 1.11.0+dfsg-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfastutil-java libfastutil-java 8.4.4-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfilesys-df-perl libfilesys-df-perl 0.92-6+b6 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libgbm1:amd64 libgbm1 20.3.5-1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf-xlib-2.0-0:amd64 libgdk-pixbuf-xlib-2.0-0 2.40.2-2 install ok installed libgdk-pixbuf2.0-0:amd64 libgdk-pixbuf2.0-0 2.40.2-2 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.2+dfsg-1+deb11u1 install ok installed libgl1:amd64 libgl1 1.3.2-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 20.3.5-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 20.3.5-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u1 install ok installed libglvnd0:amd64 libglvnd0 1.3.2-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 20.3.5-1 install ok installed libglx0:amd64 libglx0 1.3.2-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libgtk-3-0:amd64 libgtk-3-0 3.24.24-4+deb11u3 install ok installed libgtk-3-common libgtk-3-common 3.24.24-4+deb11u3 install ok installed libguava-java libguava-java 29.0-6 install ok installed libgudev-1.0-0:amd64 libgudev-1.0-0 234-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhat-trie0:amd64 libhat-trie0 0.1.2-2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libinput-bin libinput-bin 1.16.4-3 install ok installed libinput10:amd64 libinput10 1.16.4-3 install ok installed libip4tc2:amd64 libip4tc2 1.8.7-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjson-c5:amd64 libjson-c5 0.15-2+deb11u1 install ok installed libjson-glib-1.0-0:amd64 libjson-glib-1.0-0 1.6.2-1 install ok installed libjson-glib-1.0-common libjson-glib-1.0-common 1.6.2-1 install ok installed libjsoncpp24:amd64 libjsoncpp24 1.9.4-4 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkmod2:amd64 libkmod2 28-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libllvm11:amd64 libllvm11 1:11.0.1-2 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.2-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmd4c0:amd64 libmd4c0 0.4.7-2 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.1.0-3 install ok installed libmtdev1:amd64 libmtdev1 1.1.6-1 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnlopt0:amd64 libnlopt0 2.7.0-4+b2 install ok installed libnotify4:amd64 libnotify4 0.7.9-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnspr4:amd64 libnspr4 2:4.29-1 install ok installed libnss3:amd64 libnss3 2:3.61-1+deb11u3 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam-systemd:amd64 libpam-systemd 247.3-7+deb11u4 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-16-0:amd64 libpcre2-16-0 10.36-2+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpcsclite1:amd64 libpcsclite1 1.9.1-1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpipeline1:amd64 libpipeline1 1.5.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libproxy1v5:amd64 libproxy1v5 0.4.17-1 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqt5core5a:amd64 libqt5core5a 5.15.2+dfsg-9 install ok installed libqt5dbus5:amd64 libqt5dbus5 5.15.2+dfsg-9 install ok installed libqt5gui5:amd64 libqt5gui5 5.15.2+dfsg-9 install ok installed libqt5network5:amd64 libqt5network5 5.15.2+dfsg-9 install ok installed libqt5printsupport5:amd64 libqt5printsupport5 5.15.2+dfsg-9 install ok installed libqt5svg5:amd64 libqt5svg5 5.15.2-3 install ok installed libqt5widgets5:amd64 libqt5widgets5 5.15.2+dfsg-9 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librest-0.7-0:amd64 librest-0.7-0 0.8.1-1.1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-7 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-7 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsigsegv2:amd64 libsigsegv2 2.13-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libsoup-gnome2.4-1:amd64 libsoup-gnome2.4-1 2.72.0-2 install ok installed libsoup2.4-1:amd64 libsoup2.4-1 2.72.0-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssw-java libssw-java 1.1-13 install ok installed libssw0:amd64 libssw0 1.1-13 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libvulkan1:amd64 libvulkan1 1.2.162.0-1 install ok installed libwacom-common libwacom-common 1.8-2 install ok installed libwacom2:amd64 libwacom2 1.8-2 install ok installed libwayland-client0:amd64 libwayland-client0 1.18.0-2~exp1.1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.18.0-2~exp1.1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.18.0-2~exp1.1 install ok installed libwayland-server0:amd64 libwayland-server0 1.18.0-2~exp1.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwxbase3.0-0v5:amd64 libwxbase3.0-0v5 3.0.5.1+dfsg-2 install ok installed libwxgtk3.0-gtk3-0v5:amd64 libwxgtk3.0-gtk3-0v5 3.0.5.1+dfsg-2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.14-3 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.14-3 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.14-3 install ok installed libxcb-icccm4:amd64 libxcb-icccm4 0.4.1-1.1 install ok installed libxcb-image0:amd64 libxcb-image0 0.4.0-1+b3 install ok installed libxcb-keysyms1:amd64 libxcb-keysyms1 0.4.0-1+b2 install ok installed libxcb-present0:amd64 libxcb-present0 1.14-3 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.14-3 install ok installed libxcb-render-util0:amd64 libxcb-render-util0 0.3.9-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shape0:amd64 libxcb-shape0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.14-3 install ok installed libxcb-util1:amd64 libxcb-util1 0.4.0-1+b1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.14-3 install ok installed libxcb-xinerama0:amd64 libxcb-xinerama0 1.14-3 install ok installed libxcb-xinput0:amd64 libxcb-xinput0 1.14-3 install ok installed libxcb-xkb1:amd64 libxcb-xkb1 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.0-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.5-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-2 install ok installed libxi6:amd64 libxi6 2:1.7.10-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-2 install ok installed libxkbcommon-x11-0:amd64 libxkbcommon-x11-0 1.0.3-2 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.0.3-2 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.34-4+deb11u1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libz3-4:amd64 libz3-4 4.8.10-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mhap mhap 2.1.3+dfsg-3 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed mummer mummer 3.23+dfsg-7 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.22+7-1~deb11u1 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed procps procps 2:3.3.17-5 install ok installed prodigal prodigal 1:2.6.3-4 install ok installed python3 python3 3.9.2-3 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-et-xmlfile python3-et-xmlfile 1.0.1-2.1 install ok installed python3-jdcal python3-jdcal 1.0-1.3 install ok installed python3-joblib python3-joblib 0.17.0-4+deb11u1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-lxml:amd64 python3-lxml 4.6.3+dfsg-0.1+deb11u1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-openpyxl python3-openpyxl 3.0.3-1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-pymummer python3-pymummer 0.11.0-2 install ok installed python3-pysam python3-pysam 0.15.4+ds-3+b2 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.1-1 install ok installed samtools samtools 1.11-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed spades spades 3.13.1+dfsg-2+b2 install ok installed systemd systemd 247.3-7+deb11u4 install ok installed systemd-sysv systemd-sysv 247.3-7+deb11u4 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed x11-common x11-common 1:7.7+22 install ok installed xkb-data xkb-data 2.29-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 1m31.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m31.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'remove', 'adwaita-icon-theme', 'aglfn', 'bamtools', 'binfmt-support', 'bwa', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libice6:amd64', 'libicu67:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp24:amd64', 'libjsr305-java', 'libkmod2:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblua5.4-0:amd64', 'libmd0:amd64', 'libmd4c0:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw-java', 'libssw0:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'mhap', 'mummer', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'prodigal', 'python3', 'python3-distutils', 'python3-et-xmlfile', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-openpyxl', 'python3-pkg-resources', 'python3-pymummer', 'python3-pysam', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'ucf', 'x11-common', 'xkb-data', 'circlator'] 1m37.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adwaita-icon-theme aglfn bamtools binfmt-support bwa ca-certificates ca-certificates-java canu circlator dbus dbus-user-session dconf-gsettings-backend dconf-service default-jre-headless dmsetup fastaq fastjar fontconfig fontconfig-config fonts-dejavu-core gawk glib-networking glib-networking-common glib-networking-services gnuplot gnuplot-data gnuplot-qt gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme jaligner jarwrapper java-common libapache-pom-java libapparmor1 libargon2-1 libasound2 libasound2-data libatinject-jsr330-api-java libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcap2 libcolord2 libcommons-compress-java libcommons-parent-java libcryptsetup12 libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdconf1 libdeflate0 libdevmapper1.02.1 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libepoxy0 libevdev2 libexpat1 libfastutil-java libfilesys-df-perl libfontconfig1 libfreetype6 libfribidi0 libgbm1 libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf-xlib-2.0-0 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0 libgtk-3-common libguava-java libgudev-1.0-0 libharfbuzz0b libhat-trie0 libhts3 libice6 libicu67 libinput-bin libinput10 libip4tc2 libjbig0 libjpeg62-turbo libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp24 libjsr305-java libkmod2 liblcms2-2 libldap-2.4-2 libllvm11 liblua5.4-0 libmd0 libmd4c0 libmpdec3 libmpfr6 libmtdev1 libncurses6 libncursesw6 libnghttp2-14 libnlopt0 libnotify4 libnspr4 libnss3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcsclite1 libperl5.32 libpipeline1 libpixman-1-0 libpng16-16 libprocps8 libproxy1v5 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libreadline8 librest-0.7-0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsigsegv2 libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libsqlite3-0 libssh2-1 libssw-java libssw0 libthai-data libthai0 libtiff5 libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp6 libwxbase3.0-0v5 libwxgtk3.0-gtk3-0v5 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxxf86vm1 libyaml-0-2 libz3-4 media-types mhap mummer openjdk-11-jre-headless openssl perl perl-modules-5.32 procps prodigal python3 python3-distutils python3-et-xmlfile python3-jdcal python3-joblib python3-lib2to3 python3-lxml python3-minimal python3-openpyxl python3-pkg-resources python3-pymummer python3-pysam python3-yaml python3.9 python3.9-minimal readline-common samtools sensible-utils shared-mime-info spades systemd systemd-sysv ucf x11-common xkb-data 0 upgraded, 0 newly installed, 263 to remove and 0 not upgraded. After this operation, 751 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23169 files and directories currently installed.) Removing circlator (1.5.6-5) ... Removing canu (2.0+dfsg-1) ... Removing gnuplot (5.4.1+dfsg1-1+deb11u1) ... Removing gnuplot-qt (5.4.1+dfsg1-1+deb11u1) ... Removing libwxgtk3.0-gtk3-0v5:amd64 (3.0.5.1+dfsg-2) ... Removing libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Removing adwaita-icon-theme (3.38.0-1) ... Removing gnuplot-data (5.4.1+dfsg1-1+deb11u1) ... Removing aglfn (1.7+git20191031.4036a9c-2) ... Removing spades (3.13.1+dfsg-2+b2) ... Removing bamtools (2.5.1+dfsg-9) ... Removing mhap (2.1.3+dfsg-3) ... Removing jarwrapper (0.78) ... Removing binfmt-support (2.2.1-1+deb11u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing bwa (0.7.17-6+b1) ... Removing jaligner (1.0+dfsg-7) ... Removing default-jre-headless (2:1.11-72) ... Removing libgtk-3-common (3.24.24-4+deb11u3) ... Removing librest-0.7-0:amd64 (0.8.1-1.1) ... Removing libsoup-gnome2.4-1:amd64 (2.72.0-2) ... Removing libsoup2.4-1:amd64 (2.72.0-2) ... Removing glib-networking:amd64 (2.66.0-2) ... Removing gsettings-desktop-schemas (3.38.0-2) ... Removing dconf-gsettings-backend:amd64 (0.38.0-2) ... Removing dconf-service (0.38.0-2) ... Removing dbus-user-session (1.12.28-0+deb11u1) ... Removing libpam-systemd:amd64 (247.3-7+deb11u4) ... Removing dbus (1.12.28-0+deb11u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Removing systemd-sysv (247.3-7+deb11u4) ... Removing systemd (247.3-7+deb11u4) ... Removing libcryptsetup12:amd64 (2:2.3.7-1+deb11u1) ... Removing python3-pymummer (0.11.0-2) ... Removing fastaq (3.17.0-3) ... Removing fastjar (2:0.98-7) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing libqt5svg5:amd64 (5.15.2-3) ... Removing libgd3:amd64 (2.3.0-2) ... Removing mummer (3.23+dfsg-7) ... Removing gawk (1:5.1.0-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing glib-networking-services (2.66.0-2) ... dpkg: warning: while removing glib-networking-services, directory '/usr/lib/systemd' not empty so not removed Removing glib-networking-common (2.66.0-2) ... Removing gtk-update-icon-cache (3.24.24-4+deb11u3) ... Removing hicolor-icon-theme (0.17-2) ... Removing libcommons-compress-java (1.20-1) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (18-1) ... Removing libapparmor1:amd64 (2.13.6-10) ... Removing libargon2-1:amd64 (0~20171227-0.2) ... Removing libguava-java (29.0-6) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libatk-bridge2.0-0:amd64 (2.38.0-1) ... Removing libatk1.0-0:amd64 (2.36.0-2) ... Removing libatk1.0-data (2.36.0-2) ... Removing libatspi2.0-0:amd64 (2.38.0-4+deb11u1) ... Removing libqt5printsupport5:amd64 (5.15.2+dfsg-9) ... Removing libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Removing samtools (1.11-1) ... Removing libcairo-gobject2:amd64 (1.16.0-5) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libcap2:amd64 (1:2.44-1) ... Removing libcolord2:amd64 (1.4.5-3) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libdconf1:amd64 (0.38.0-2) ... Removing libnotify4:amd64 (0.7.9-3) ... Removing libgdk-pixbuf2.0-0:amd64 (2.40.2-2) ... Removing libqt5widgets5:amd64 (5.15.2+dfsg-9) ... Removing libepoxy0:amd64 (1.5.5-1) ... Removing libwxbase3.0-0v5:amd64 (3.0.5.1+dfsg-2) ... Removing python3-yaml (5.3.1-5) ... Removing python3-distutils (3.9.2-1) ... Removing libfastutil-java (8.4.4-1) ... Removing libfilesys-df-perl (0.92-6+b6) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgdk-pixbuf-xlib-2.0-0:amd64 (2.40.2-2) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libhat-trie0:amd64 (0.1.2-2) ... Removing python3-openpyxl (3.0.3-1) ... Removing python3-lxml:amd64 (4.6.3+dfsg-0.1+deb11u1) ... Removing libxslt1.1:amd64 (1.1.34-4+deb11u1) ... Removing libip4tc2:amd64 (1.8.7-1) ... Removing libjson-c5:amd64 (0.15-2+deb11u1) ... Removing libjson-glib-1.0-0:amd64 (1.6.2-1) ... Removing libjson-glib-1.0-common (1.6.2-1) ... Removing libjsoncpp24:amd64 (1.9.4-4) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing libkmod2:amd64 (28-1) ... Removing liblua5.4-0:amd64 (5.4.2-2) ... Removing libmpfr6:amd64 (4.1.0-3) ... Removing python3-joblib (0.17.0-4+deb11u1) ... Removing procps (2:3.3.17-5) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnlopt0:amd64 (2.7.0-4+b2) ... Removing libpipeline1:amd64 (1.5.3-1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libproxy1v5:amd64 (0.4.17-1) ... Removing libsigsegv2:amd64 (2.13-1) ... Removing libssw-java (1.1-13) ... Removing libssw0:amd64 (1.1-13) ... Removing libthai-data (0.1.28-3) ... Removing libwayland-cursor0:amd64 (1.18.0-2~exp1.1) ... Removing libwayland-egl1:amd64 (1.18.0-2~exp1.1) ... Removing libxrandr2:amd64 (2:1.5.1-1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.0-2) ... Removing libxinerama1:amd64 (2:1.1.4-2) ... Removing libxi6:amd64 (2:1.7.10-1) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing prodigal (1:2.6.3-4) ... Removing python3-et-xmlfile (1.0.1-2.1) ... Removing python3-jdcal (1.0-1.3) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-pkg-resources (52.0.0-4) ... Removing python3-pysam (0.15.4+ds-3+b2) ... Removing libqt5gui5:amd64 (5.15.2+dfsg-9) ... Removing fontconfig (2.13.1-4.2) ... Removing libhts3:amd64 (1.11-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Removing libxcb-icccm4:amd64 (0.4.1-1.1) ... Removing libxcb-render-util0:amd64 (0.3.9-1+b1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libqt5network5:amd64 (5.15.2+dfsg-9) ... Removing libqt5dbus5:amd64 (5.15.2+dfsg-9) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libqt5core5a:amd64 (5.15.2+dfsg-9) ... Removing libdouble-conversion3:amd64 (3.1.5-6.1) ... Removing libgl1:amd64 (1.3.2-1) ... Removing libglx0:amd64 (1.3.2-1) ... Removing libglx-mesa0:amd64 (20.3.5-1) ... Removing libgl1-mesa-dri:amd64 (20.3.5-1) ... Removing libdrm-amdgpu1:amd64 (2.4.104-1) ... Removing libegl1:amd64 (1.3.2-1) ... Removing libegl-mesa0:amd64 (20.3.5-1) ... Removing libgbm1:amd64 (20.3.5-1) ... Removing libdrm-intel1:amd64 (2.4.104-1) ... Removing libdrm-nouveau2:amd64 (2.4.104-1) ... Removing libdrm-radeon1:amd64 (2.4.104-1) ... Removing libllvm11:amd64 (1:11.0.1-2) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing libelf1:amd64 (0.183-1) ... Removing libinput10:amd64 (1.16.4-3) ... Removing libinput-bin (1.16.4-3) ... Removing libevdev2:amd64 (1.11.0+dfsg-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Removing libglapi-mesa:amd64 (20.3.5-1) ... Removing shared-mime-info (2.0-1) ... Removing libwacom2:amd64 (1.8-2) ... Removing libglvnd0:amd64 (1.3.2-1) ... Removing libgudev-1.0-0:amd64 (234-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libmd4c0:amd64 (0.4.7-2) ... Removing python3.9 (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-1) ... Removing libmtdev1:amd64 (1.1.6-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpcre2-16-0:amd64 (10.36-2+deb11u1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsensors5:amd64 (1:3.6.0-7) ... Removing libsensors-config (1:3.6.0-7) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libvulkan1:amd64 (1.2.162.0-1) ... Removing libwacom-common (1.8-2) ... Removing libwayland-client0:amd64 (1.18.0-2~exp1.1) ... Removing libwayland-server0:amd64 (1.18.0-2~exp1.1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb-dri2-0:amd64 (1.14-3) ... Removing libxcb-dri3-0:amd64 (1.14-3) ... Removing libxcb-glx0:amd64 (1.14-3) ... Removing libxcb-image0:amd64 (0.4.0-1+b3) ... Removing libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Removing libxcb-present0:amd64 (1.14-3) ... Removing libxcb-randr0:amd64 (1.14-3) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxcb-shape0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxcb-sync1:amd64 (1.14-3) ... Removing libxcb-util1:amd64 (0.4.0-1+b1) ... Removing libxcb-xfixes0:amd64 (1.14-3) ... Removing libxcb-xinerama0:amd64 (1.14-3) ... Removing libxcb-xinput0:amd64 (1.14-3) ... Removing libxkbcommon-x11-0:amd64 (1.0.3-2) ... Removing libxcb-xkb1:amd64 (1.14-3) ... Removing libxdamage1:amd64 (1:1.1.5-2) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxfixes3:amd64 (1:5.0.3-2) ... Removing libxkbcommon0:amd64 (1.0.3-2) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.10-1) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-1) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xkb-data (2.29-2) ... Removing libdrm2:amd64 (2.4.104-1) ... Removing libdrm-common (2.4.104-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ca-certificates-java (20190909+deb11u1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing dmsetup (2:1.02.175-2.1) ... Removing libdevmapper1.02.1:amd64 (2:1.02.175-2.1) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing fonts-dejavu-core (2.37-2) ... Removing java-common (0.72) ... Removing libasound2:amd64 (1.2.4-1.1) ... Removing libasound2-data (1.2.4-1.1) ... Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Removing libavahi-client3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common-data:amd64 (0.8-5+deb11u2) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libnss3:amd64 (2:3.61-1+deb11u3) ... Removing libnspr4:amd64 (2:4.29-1) ... Removing libpcsclite1:amd64 (1.9.1-1) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'remove', 'adwaita-icon-theme', 'aglfn', 'bamtools', 'binfmt-support', 'bwa', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libice6:amd64', 'libicu67:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp24:amd64', 'libjsr305-java', 'libkmod2:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblua5.4-0:amd64', 'libmd0:amd64', 'libmd4c0:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw-java', 'libssw0:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'mhap', 'mummer', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'prodigal', 'python3', 'python3-distutils', 'python3-et-xmlfile', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-openpyxl', 'python3-pkg-resources', 'python3-pymummer', 'python3-pysam', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'ucf', 'x11-common', 'xkb-data', 'circlator'] 1m37.4s INFO: Running scripts post_remove 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_remove_exceptions'] 1m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_remove_exceptions'] 1m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--purge', 'adwaita-icon-theme', 'aglfn', 'bamtools', 'binfmt-support', 'bwa', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libice6:amd64', 'libicu67:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp24:amd64', 'libjsr305-java', 'libkmod2:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblua5.4-0:amd64', 'libmd0:amd64', 'libmd4c0:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw-java', 'libssw0:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'mhap', 'mummer', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'prodigal', 'python3', 'python3-distutils', 'python3-et-xmlfile', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-openpyxl', 'python3-pkg-resources', 'python3-pymummer', 'python3-pysam', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'ucf', 'x11-common', 'xkb-data'] 1m38.7s DUMP: (Reading database ... 6793 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (3.38.0-1) ... dpkg: warning: ignoring request to remove aglfn which isn't installed dpkg: warning: ignoring request to remove bamtools which isn't installed Purging configuration files for binfmt-support (2.2.1-1+deb11u1) ... dpkg: warning: ignoring request to remove bwa which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909+deb11u1) ... dpkg: warning: ignoring request to remove canu which isn't installed Purging configuration files for dbus (1.12.28-0+deb11u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory Purging configuration files for dbus-user-session (1.12.28-0+deb11u1) ... dpkg: warning: ignoring request to remove dconf-gsettings-backend which isn't installed dpkg: warning: ignoring request to remove dconf-service which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove dmsetup which isn't installed dpkg: warning: ignoring request to remove fastaq which isn't installed dpkg: warning: ignoring request to remove fastjar which isn't installed Purging configuration files for fontconfig (2.13.1-4.2) ... Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for gawk (1:5.1.0-1) ... dpkg: warning: ignoring request to remove glib-networking which isn't installed dpkg: warning: ignoring request to remove glib-networking-common which isn't installed dpkg: warning: ignoring request to remove glib-networking-services which isn't installed dpkg: warning: ignoring request to remove gnuplot which isn't installed dpkg: warning: ignoring request to remove gnuplot-data which isn't installed dpkg: warning: ignoring request to remove gnuplot-qt which isn't installed dpkg: warning: ignoring request to remove gsettings-desktop-schemas which isn't installed dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove jaligner which isn't installed dpkg: warning: ignoring request to remove jarwrapper which isn't installed Purging configuration files for java-common (0.72) ... dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libapparmor1 which isn't installed dpkg: warning: ignoring request to remove libargon2-1 which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk-bridge2.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libatk1.0-data which isn't installed dpkg: warning: ignoring request to remove libatspi2.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.1 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo-gobject2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcap2 which isn't installed dpkg: warning: ignoring request to remove libcolord2 which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcryptsetup12 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdconf1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevmapper1.02.1 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libegl-mesa0 which isn't installed dpkg: warning: ignoring request to remove libegl1 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libepoxy0 which isn't installed dpkg: warning: ignoring request to remove libevdev2 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfastutil-java which isn't installed dpkg: warning: ignoring request to remove libfilesys-df-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgbm1 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf-xlib-2.0-0 which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-0 which isn't installed dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (20.3.5-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgtk-3-0:amd64 (3.24.24-4+deb11u3) ... Purging configuration files for libgtk-3-common (3.24.24-4+deb11u3) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libgudev-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libinput-bin which isn't installed dpkg: warning: ignoring request to remove libinput10 which isn't installed dpkg: warning: ignoring request to remove libip4tc2 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjson-c5 which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libjson-glib-1.0-common which isn't installed dpkg: warning: ignoring request to remove libjsoncpp24 which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libkmod2 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libllvm11 which isn't installed dpkg: warning: ignoring request to remove liblua5.4-0 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmd4c0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmtdev1 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpam-systemd which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcre2-16-0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpipeline1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libproxy1v5 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed Purging configuration files for libqt5core5a:amd64 (5.15.2+dfsg-9) ... dpkg: warning: ignoring request to remove libqt5dbus5 which isn't installed Purging configuration files for libqt5gui5:amd64 (5.15.2+dfsg-9) ... dpkg: warning: ignoring request to remove libqt5network5 which isn't installed dpkg: warning: ignoring request to remove libqt5printsupport5 which isn't installed dpkg: warning: ignoring request to remove libqt5svg5 which isn't installed dpkg: warning: ignoring request to remove libqt5widgets5 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librest-0.7-0 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-7) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsoup-gnome2.4-1 which isn't installed dpkg: warning: ignoring request to remove libsoup2.4-1 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssw-java which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwacom-common which isn't installed dpkg: warning: ignoring request to remove libwacom2 which isn't installed dpkg: warning: ignoring request to remove libwayland-client0 which isn't installed dpkg: warning: ignoring request to remove libwayland-cursor0 which isn't installed dpkg: warning: ignoring request to remove libwayland-egl1 which isn't installed dpkg: warning: ignoring request to remove libwayland-server0 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwxbase3.0-0v5 which isn't installed dpkg: warning: ignoring request to remove libwxgtk3.0-gtk3-0v5 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-icccm4 which isn't installed dpkg: warning: ignoring request to remove libxcb-image0 which isn't installed dpkg: warning: ignoring request to remove libxcb-keysyms1 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render-util0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shape0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-util1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinerama0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xinput0 which isn't installed dpkg: warning: ignoring request to remove libxcb-xkb1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon-x11-0 which isn't installed dpkg: warning: ignoring request to remove libxkbcommon0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mhap which isn't installed dpkg: warning: ignoring request to remove mummer which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... Purging configuration files for openssl (1.1.1w-0+deb11u1) ... Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for procps (2:3.3.17-5) ... dpkg: warning: ignoring request to remove prodigal which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-et-xmlfile which isn't installed dpkg: warning: ignoring request to remove python3-jdcal which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-openpyxl which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pymummer which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove spades which isn't installed Purging configuration files for systemd (247.3-7+deb11u4) ... dpkg: warning: ignoring request to remove systemd-sysv which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xkb-data which isn't installed 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--purge', 'adwaita-icon-theme', 'aglfn', 'bamtools', 'binfmt-support', 'bwa', 'ca-certificates', 'ca-certificates-java', 'canu', 'dbus', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre-headless', 'dmsetup', 'fastaq', 'fastjar', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'gawk', 'glib-networking:amd64', 'glib-networking-common', 'glib-networking-services', 'gnuplot', 'gnuplot-data', 'gnuplot-qt', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'jaligner', 'jarwrapper', 'java-common', 'libapache-pom-java', 'libapparmor1:amd64', 'libargon2-1:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk-bridge2.0-0:amd64', 'libatk1.0-0:amd64', 'libatk1.0-data', 'libatspi2.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcolord2:amd64', 'libcommons-compress-java', 'libcommons-parent-java', 'libcryptsetup12:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libdeflate0:amd64', 'libdevmapper1.02.1:amd64', 'libdouble-conversion3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libegl-mesa0:amd64', 'libegl1:amd64', 'libelf1:amd64', 'libepoxy0:amd64', 'libevdev2:amd64', 'libexpat1:amd64', 'libfastutil-java', 'libfilesys-df-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgbm1:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf-xlib-2.0-0:amd64', 'libgdk-pixbuf2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk-3-0:amd64', 'libgtk-3-common', 'libguava-java', 'libgudev-1.0-0:amd64', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libice6:amd64', 'libicu67:amd64', 'libinput-bin', 'libinput10:amd64', 'libip4tc2:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjson-c5:amd64', 'libjson-glib-1.0-0:amd64', 'libjson-glib-1.0-common', 'libjsoncpp24:amd64', 'libjsr305-java', 'libkmod2:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblua5.4-0:amd64', 'libmd0:amd64', 'libmd4c0:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libmtdev1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnlopt0:amd64', 'libnotify4:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcre2-16-0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpipeline1:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libproxy1v5:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqt5core5a:amd64', 'libqt5dbus5:amd64', 'libqt5gui5:amd64', 'libqt5network5:amd64', 'libqt5printsupport5:amd64', 'libqt5svg5:amd64', 'libqt5widgets5:amd64', 'libreadline8:amd64', 'librest-0.7-0:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoup-gnome2.4-1:amd64', 'libsoup2.4-1:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw-java', 'libssw0:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libvulkan1:amd64', 'libwacom-common', 'libwacom2:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwayland-server0:amd64', 'libwebp6:amd64', 'libwxbase3.0-0v5:amd64', 'libwxgtk3.0-gtk3-0v5:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-icccm4:amd64', 'libxcb-image0:amd64', 'libxcb-keysyms1:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render-util0:amd64', 'libxcb-render0:amd64', 'libxcb-shape0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-util1:amd64', 'libxcb-xfixes0:amd64', 'libxcb-xinerama0:amd64', 'libxcb-xinput0:amd64', 'libxcb-xkb1:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon-x11-0:amd64', 'libxkbcommon0:amd64', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'media-types', 'mhap', 'mummer', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'prodigal', 'python3', 'python3-distutils', 'python3-et-xmlfile', 'python3-jdcal', 'python3-joblib', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-openpyxl', 'python3-pkg-resources', 'python3-pymummer', 'python3-pysam', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'spades', 'systemd', 'systemd-sysv', 'ucf', 'x11-common', 'xkb-data'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--purge', 'circlator'] 1m38.7s DUMP: dpkg: warning: ignoring request to remove circlator which isn't installed 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--purge', 'circlator'] 1m38.7s INFO: Running scripts post_purge 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_purge_exceptions'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_purge_exceptions'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--purge', '--pending'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--purge', '--pending'] 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--remove', '--pending'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg', '--remove', '--pending'] 1m38.7s INFO: Running scripts post_test 1m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_test_exceptions'] 1m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'tmp/scripts/post_test_exceptions'] 1m38.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 1m39.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 1m39.7s DEBUG: No broken symlinks as far as we can find. 1m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-divert', '--list'] 1m39.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'dpkg-divert', '--list'] 1m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'clean'] 1m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q', 'apt-get', 'clean'] 1m39.8s DEBUG: Recording chroot state 1m40.3s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned 1m40.3s INFO: PASS: Installation and purging test. 1m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/shm'] 1m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/shm'] 1m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/console'] 1m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/console'] 1m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/ptmx'] 1m40.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/ptmx'] 1m40.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/pts'] 1m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/dev/pts'] 1m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/proc'] 1m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q/proc'] 1m40.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 1m40.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5mb5hy5q'] 1m40.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5mb5hy5q 1m40.9s INFO: PASS: All tests. 1m40.9s INFO: piuparts run ends. ret=0 End: 2024-02-12 13:16:02 GMT