Start: 2024-04-19 04:39:35 GMT Package: pigx-rnaseq Version: 0.0.10+ds-2 Installed-Size: 151 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, pandoc-citeproc, snakemake, fastqc, samtools, python3-deeptools, salmon, rna-star, trim-galore, multiqc, python3-htseq, r-bioc-deseq2, r-bioc-tximport, r-cran-data.table, r-cran-rlang, r-cran-rmarkdown, r-cran-ggplot2, r-cran-ggrepel, r-cran-dt (>= 0.15+dfsg-2), r-cran-pheatmap, r-cran-corrplot, r-cran-reshape2, r-cran-plotly, r-cran-scales, r-cran-crosstalk, r-cran-gprofiler, r-bioc-summarizedexperiment, r-bioc-rtracklayer, r-cran-rjson, libjs-jquery-datatables, libjs-jquery-tablesorter Description: pipeline for checkpointed and distributed RNA-seq analyses Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c Section: science Priority: optional Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.0.10+ds-2_all.deb Size: 54364 MD5sum: 9f43b757b62d0110fd87612559a98a54 SHA256: 42e1e07a5c08e81287bcd2c8b5b4dd34c1900baa59d97d4ab5cccf23575e33a2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt pigx-rnaseq=0.0.10+ds-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt pigx-rnaseq=0.0.10+ds-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpnmpk3yy1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpnmpk3yy1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpnmpk3yy1/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpnmpk3yy1/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_dummy_users'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'clean'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'clean'] 0m3.8s DEBUG: Recording chroot state 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-divert', '--list'] 0m4.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s INFO: apt-cache does not know about any of the requested packages 0m4.4s INFO: Running scripts pre_test 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 0m5.3s DEBUG: No broken symlinks as far as we can find. 0m5.3s INFO: Running scripts pre_install 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_extras'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_extras'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_log_alternatives'] 0m5.4s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_install_log_alternatives'] 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 0m5.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 0m6.3s DEBUG: No broken symlinks as far as we can find. 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-cache', 'policy'] 0m7.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-cache', 'policy'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m7.1s DUMP: pigx-rnaseq: Installed: (none) Candidate: 0.0.10+ds-2 Version table: 0.0.10+ds-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.0.10+ds-2'] 2m30.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ant ant-optional ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cutadapt default-jre default-jre-headless docutils-common fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax git git-man java-common libactivation-java libaec0 libaopalliance-java libapache-pom-java libargs4j-java libasan6 libasound2 libasound2-data libatinject-jsr330-api-java libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libbibutils7 libbigwig0 libblas3 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-ares2 libc-dev-bin libc6-dev libcairo2 libcdi-api-java libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 liberror-perl libexpat1 libfastinfoset-java libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran5 libghc-pandoc-citeproc-data libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhdf5-103-1 libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libice6 libicu67 libimagequant0 libistack-commons-java libitm1 libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-d3-format libjs-es5-shim libjs-highlight.js libjs-inherits libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-sprintf-js libjs-twitter-bootstrap-datepicker libjs-underscore libjs-util libjsoup-java libjsr305-java liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm11 liblsan0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnode72 libnotify-bin libnotify4 libnsl-dev libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libpsl5 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsis-base-java libsis-base-jni libsis-jhdf5-java libsis-jhdf5-jni libsisu-inject-java libsisu-plexus-java libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1 libstaden-read14 libstax-ex-java libstdc++-10-dev libstreambuffer-java libsz2 libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libtxw2-java libubsan1 libuv1 libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 linux-libc-dev littler mailcap media-types mime-support mocha multiqc node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-highlight.js node-html5shiv node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-normalize.css node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openjdk-11-jre openjdk-11-jre-headless openssl pandoc pandoc-citeproc pandoc-data perl perl-modules-5.32 pigz python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-appdirs python3-attr python3-babel python3-certifi python3-chardet python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-distutils python3-dnaio python3-docutils python3-future python3-git python3-gitdb python3-htseq python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-packaging python3-pil python3-pkg-resources python3-plotly python3-psutil python3-pulp python3-py2bit python3-pybigwig python3-pygments python3-pyparsing python3-pyrsistent python3-pysam python3-ratelimiter python3-requests python3-retrying python3-roman python3-scipy python3-setuptools python3-simplejson python3-six python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-toposort python3-traitlets python3-tz python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-zipp python3.9 python3.9-minimal r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-cachem r-cran-callr r-cran-cli r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-corrplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gprofiler r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml readline-common rna-star salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common sphinx-rtd-theme-common trim-galore ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip zlib1g-dev Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn libaopalliance-java-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc manpages-dev libel-api-java libcommons-io-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java gdbm-l10n libasm-java libcglib-java picard-tools libjdom1-java libxom-java libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libjs-angularjs libjsoup-java-doc libjsr305-java-doc liblcms2-utils libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java pciutils pcscd libplexus-classworlds-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc lm-sensors testng libstdc++-10-doc tcl8.6 tk8.6 libxml-commons-resolver1.1-java-doc chai javascript-common npm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic texlive-latex-recommended texlive-xetex texlive-luatex texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python ruby node-katex citation-style-language-styles perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc python-cycler-doc python-python-deeptoolsintervals-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-future-doc python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip python-markdown-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils ttf-staypuft python-networkx-doc gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pil-doc python3-pil-dbg python3-pandas python3-ipykernel python-psutil-doc python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk python3-sphinx-rtd-theme sphinx-doc texlive-fonts-recommended texlive-plain-generic python3.9-venv python3.9-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-bioc-all r-bioc-affy r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-hdf5array r-bioc-delayedmatrixstats r-cran-readr r-cran-pbapply r-cran-biocmanager r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-covr r-cran-roxygen2 r-cran-prettycode r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-png r-cran-jpeg r-cran-viridis r-cran-xml2 r-cran-bench r-cran-progress r-cran-r.utils r-cran-xts r-cran-zoo r-cran-rmysql r-cran-broom r-cran-rpostgresql r-cran-testit r-cran-unitizer r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-rpart r-cran-sf r-cran-svglite r-cran-gridextra r-cran-devtools r-cran-ggbeeswarm r-cran-forcats r-cran-cairo r-cran-ragg r-cran-magick r-cran-rgl r-cran-webshot r-cran-reticulate r-cran-getopt r-cran-interp r-cran-gam r-cran-ggally r-cran-vdiffr r-cran-dendextend r-cran-irdisplay r-cran-doparallel r-cran-iterators r-cran-itertools r-cran-inline r-cran-tufte r-cran-dygraphs r-cran-fs r-cran-rsconnect r-cran-gh r-cran-hms r-cran-rvest r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-mockery r-cran-usethis r-cran-formattable r-cran-zeallot r-cran-remotes r-cran-plm readline-doc cwltool sgml-base-doc debhelper Recommended packages: patch less ssh-client alsa-ucm-conf alsa-topology-conf curl manpages manpages-dev libc-devtools dbus libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs javascript-common libldap-common libjansi-java libgpm2 notification-daemon publicsuffix libsasl2-modules mesa-vulkan-drivers | vulkan-icd bzip2 file xz-utils node-clipboard libjs-filesaver texlive-xetex nodejs-doc libatk-wrapper-java-jni fonts-dejavu-extra netbase python3-tk python3-gdal python3-pydot python3-pygraphviz python3-olefile g++ | c++-compiler make r-recommended r-base-dev r-doc-html r-bioc-go.db r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-glmgampoi r-cran-class r-bioc-shortread r-cran-cliapp r-cran-mockery r-cran-decor r-cran-webutils r-cran-hms r-cran-dbplyr r-cran-testit r-cran-codetools r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr r-cran-quantreg r-cran-xml2 r-cran-tikzdevice r-cran-sodium r-cran-lubridate r-cran-ggthemes r-cran-maps r-cran-maptools r-cran-png r-cran-rsclient r-cran-sf r-cran-domc r-cran-abind r-cran-future r-cran-mockr r-cran-dbitest r-cran-dygraphs cwltool imagemagick python3-yappi python3-azure-storage python3-biopython python3-boto3 python3-botocore python3-drmaa python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ant ant-optional ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cutadapt default-jre default-jre-headless docutils-common fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax git git-man java-common libactivation-java libaec0 libaopalliance-java libapache-pom-java libargs4j-java libasan6 libasound2 libasound2-data libatinject-jsr330-api-java libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libbibutils7 libbigwig0 libblas3 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-ares2 libc-dev-bin libc6-dev libcairo2 libcdi-api-java libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 liberror-perl libexpat1 libfastinfoset-java libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran5 libghc-pandoc-citeproc-data libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhdf5-103-1 libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libice6 libicu67 libimagequant0 libistack-commons-java libitm1 libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-d3-format libjs-es5-shim libjs-highlight.js libjs-inherits libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-sprintf-js libjs-twitter-bootstrap-datepicker libjs-underscore libjs-util libjsoup-java libjsr305-java liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm11 liblsan0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnode72 libnotify-bin libnotify4 libnsl-dev libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libpsl5 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsis-base-java libsis-base-jni libsis-jhdf5-java libsis-jhdf5-jni libsisu-inject-java libsisu-plexus-java libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1 libstaden-read14 libstax-ex-java libstdc++-10-dev libstreambuffer-java libsz2 libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libtxw2-java libubsan1 libuv1 libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 linux-libc-dev littler mailcap media-types mime-support mocha multiqc node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-highlight.js node-html5shiv node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-normalize.css node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openjdk-11-jre openjdk-11-jre-headless openssl pandoc pandoc-citeproc pandoc-data perl perl-modules-5.32 pigx-rnaseq pigz python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-appdirs python3-attr python3-babel python3-certifi python3-chardet python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-distutils python3-dnaio python3-docutils python3-future python3-git python3-gitdb python3-htseq python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-packaging python3-pil python3-pkg-resources python3-plotly python3-psutil python3-pulp python3-py2bit python3-pybigwig python3-pygments python3-pyparsing python3-pyrsistent python3-pysam python3-ratelimiter python3-requests python3-retrying python3-roman python3-scipy python3-setuptools python3-simplejson python3-six python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-toposort python3-traitlets python3-tz python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-zipp python3.9 python3.9-minimal r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-cachem r-cran-callr r-cran-cli r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-corrplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gprofiler r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml readline-common rna-star salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common sphinx-rtd-theme-common trim-galore ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip zlib1g-dev 0 upgraded, 684 newly installed, 0 to remove and 0 not upgraded. Need to get 485 MB of archives. After this operation, 1798 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 pigz amd64 2.6-1 [64.0 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.22+7-1~deb11u1 [38.2 MB] Get:55 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 ant all 1.10.9-4 [2118 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 ant-optional all 1.10.9-4 [381 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-1 [485 kB] Get:63 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bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1+deb11u2 [204 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:96 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre amd64 11.0.22+7-1~deb11u1 [194 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:120 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libjbzip2-java all 0.9.1-5 [42.6 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get:125 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libcommons-jexl2-java all 2.1.1-5 [256 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 libargs4j-java all 2.33-1.1 [137 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libdom4j-java all 2.1.3-1 [310 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libcommons-io-java all 2.8.0-1 [279 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-utils-java all 3.3.0-1+deb11u1 [149 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:136 http://deb.debian.org/debian bullseye/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang3-java all 3.11-1 [550 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:140 http://deb.debian.org/debian bullseye/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libguava-java all 29.0-6 [2419 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:144 http://deb.debian.org/debian bullseye/main amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libwagon-provider-api-java all 3.3.4-1 [50.2 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libmaven-resolver-java all 1.4.2-3 [556 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libplexus-cipher-java all 1.8-2 [15.0 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libplexus-component-annotations-java all 2.1.0-1 [7620 B] Get:150 http://deb.debian.org/debian bullseye/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:153 http://deb.debian.org/debian bullseye/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libslf4j-java all 1.7.30-1 [144 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libmaven3-core-java all 3.6.3-5 [1538 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libplexus-io-java all 3.2.0-1.1 [65.0 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libsnappy-jni amd64 1.1.8.3-1 [7152 B] Get:163 http://deb.debian.org/debian bullseye/main amd64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 libxz-java all 1.8-2 [141 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 libhttpcore-java all 4.4.14-1 [631 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libhttpclient-java all 4.5.13-2 [1233 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 libwagon-http-java all 3.3.4-1 [53.9 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10 [163 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 librngom-java all 2.3.0.1-10 [288 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 libxsom-java all 2.3.0.1-10 [396 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 libtxw2-java all 2.3.0.1-10 [134 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 libjaxb-java all 2.3.0.1-10 [1954 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk2 amd64 2.10.9-1 [59.2 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk-dev amd64 2.10.9-1 [104 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 libngs-java amd64 2.10.9-1 [80.4 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1607 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 libfindbin-libs-perl all 2.190.02-1 [30.3 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libsis-base-jni amd64 18.09~pre1+git20180928.45fbd31+dfsg-3 [12.5 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libsis-base-java all 18.09~pre1+git20180928.45fbd31+dfsg-3 [97.8 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:193 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 libsis-jhdf5-jni amd64 19.04.0+dfsg-4 [96.9 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 libsis-jhdf5-java all 19.04.0+dfsg-4 [1491 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 fastqc all 0.11.9+dfsg-4 [390 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 git-man all 1:2.30.2-1+deb11u2 [1828 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 git amd64 1:2.30.2-1+deb11u2 [5518 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:215 http://deb.debian.org/debian bullseye/main amd64 libbibutils7 amd64 6.10-2 [387 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 libbigwig0 amd64 0.4.4+dfsg-2 [27.1 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u8 [276 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.209-2 [1698 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u8 [2361 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:232 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-9 [264 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u3 [102 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 libcmark-gfm0 amd64 0.29.0.gfm.0-6 [117 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 libcmark-gfm-extensions0 amd64 0.29.0.gfm.0-6 [46.1 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u1 [147 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 libghc-pandoc-citeproc-data all 0.17.0.1-1 [80.3 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 libhtscodecs2 amd64 0.5-3 [50.6 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 libjemalloc2 amd64 5.2.1-3 [248 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:261 http://deb.debian.org/debian bullseye/main amd64 libjs-d3-format all 1:1.4.1-3 [16.9 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 libjs-es5-shim all 4.5.15-1 [43.6 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [397 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 libjs-inherits all 2.0.4-1 [3228 B] Get:265 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables all 1.10.21+dfsg-2+deb11u1 [138 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-metadata all 12-3 [7660 B] Get:269 http://deb.debian.org/debian bullseye/main amd64 libjs-sifter.js all 0.6.0+dfsg-1 [12.1 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get:271 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 libjs-json all 0~20190826+~1.0.5-2 [20.5 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 libjs-modernizr all 2.6.2+ds1-4 [47.1 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 libjs-sprintf-js all 1.1.2+ds1-2 [12.3 kB] Get:281 http://deb.debian.org/debian bullseye/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:282 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get:283 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.12~dfsg-1~deb11u4 [8332 kB] Get:284 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.12~dfsg-1~deb11u4 [148 kB] Get:285 http://deb.debian.org/debian bullseye/main amd64 node-inherits all 2.0.4-1 [4204 B] Get:286 http://deb.debian.org/debian bullseye/main amd64 libjs-util all 0.10.3-4 [9620 B] Get:287 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:288 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:289 http://deb.debian.org/debian bullseye/main amd64 libnotify4 amd64 0.7.9-3 [23.7 kB] Get:290 http://deb.debian.org/debian bullseye/main amd64 libnotify-bin amd64 0.7.9-3 [14.2 kB] Get:291 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:292 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:293 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:294 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:295 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:296 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:297 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:298 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get:299 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:300 http://deb.debian.org/debian bullseye/main amd64 libstaden-read14 amd64 1.14.13-4 [265 kB] Get:301 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:302 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:303 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:304 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:305 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:306 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:307 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:308 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:309 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:310 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:311 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:312 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:313 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:314 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:315 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get:316 http://deb.debian.org/debian bullseye/main amd64 node-ansi-colors all 4.1.1-2 [13.2 kB] Get:317 http://deb.debian.org/debian bullseye/main amd64 node-browser-stdout all 1.3.1-2 [3268 B] Get:318 http://deb.debian.org/debian bullseye/main amd64 node-camelcase all 6.2.0-2 [5512 B] Get:319 http://deb.debian.org/debian bullseye/main amd64 node-color-name all 1.1.4+~1.1.1-1 [5788 B] Get:320 http://deb.debian.org/debian bullseye/main amd64 node-color-convert all 1.9.3-1 [10.2 kB] Get:321 http://deb.debian.org/debian bullseye/main amd64 node-ansi-styles all 4.2.1-1 [7600 B] Get:322 http://deb.debian.org/debian bullseye/main amd64 node-escape-string-regexp all 4.0.0-1 [4116 B] Get:323 http://deb.debian.org/debian bullseye/main amd64 node-has-flag all 4.0.0-1 [4076 B] Get:324 http://deb.debian.org/debian bullseye/main amd64 node-supports-color all 8.1.0+~7.2.0-1 [6736 B] Get:325 http://deb.debian.org/debian bullseye/main amd64 node-chalk all 4.1.0-1 [15.0 kB] Get:326 http://deb.debian.org/debian bullseye/main amd64 node-is-extglob all 2.1.1-1 [4128 B] Get:327 http://deb.debian.org/debian bullseye/main amd64 node-is-glob all 4.0.1-1 [6312 B] Get:328 http://deb.debian.org/debian bullseye/main amd64 node-binary-extensions all 2.2.0-1 [4352 B] Get:329 http://deb.debian.org/debian bullseye/main amd64 node-is-binary-path all 2.1.0-1 [3432 B] Get:330 http://deb.debian.org/debian bullseye/main amd64 node-normalize-path all 3.0.0-2 [5752 B] Get:331 http://deb.debian.org/debian bullseye/main amd64 node-anymatch all 3.1.1+~2.2.2-1 [28.5 kB] Get:332 http://deb.debian.org/debian bullseye/main amd64 node-graceful-fs all 4.2.4+repack-1 [13.1 kB] Get:333 http://deb.debian.org/debian bullseye/main amd64 node-set-immediate-shim all 2.0.0-1 [3600 B] Get:334 http://deb.debian.org/debian bullseye/main amd64 node-readdirp all 3.5.0-2 [11.3 kB] Get:335 http://deb.debian.org/debian bullseye/main amd64 node-async-each all 1.0.3-1 [4024 B] Get:336 http://deb.debian.org/debian bullseye/main amd64 node-is-buffer all 2.0.5-1 [4048 B] Get:337 http://deb.debian.org/debian bullseye/main amd64 node-kind-of all 6.0.3+dfsg-1 [10.0 kB] Get:338 http://deb.debian.org/debian bullseye/main amd64 node-is-number all 7.0.0-1.1 [5860 B] Get:339 http://deb.debian.org/debian bullseye/main amd64 node-repeat-string all 1.6.1-1 [5180 B] Get:340 http://deb.debian.org/debian bullseye/main amd64 node-to-regex-range all 5.0.1-2 [10.2 kB] Get:341 http://deb.debian.org/debian bullseye/main amd64 node-fill-range all 7.0.1-2 [7872 B] Get:342 http://deb.debian.org/debian bullseye/main amd64 node-braces all 3.0.2+~3.0.0-1 [20.6 kB] Get:343 http://deb.debian.org/debian bullseye/main amd64 node-path-is-absolute all 2.0.0-1 [3864 B] Get:344 http://deb.debian.org/debian bullseye/main amd64 node-path-dirname all 1.0.2-1.1 [3972 B] Get:345 http://deb.debian.org/debian bullseye/main amd64 node-glob-parent all 5.1.1+~5.1.0-2 [6672 B] Get:346 http://deb.debian.org/debian bullseye/main amd64 node-chokidar all 3.4.3-3 [32.0 kB] Get:347 http://deb.debian.org/debian bullseye/main amd64 node-ms all 2.1.3+~cs0.7.31-1 [5612 B] Get:348 http://deb.debian.org/debian bullseye/main amd64 node-debug all 4.3.1+~cs4.1.5-1 [17.3 kB] Get:349 http://deb.debian.org/debian bullseye/main amd64 node-decamelize all 4.0.0-1 [3944 B] Get:350 http://deb.debian.org/debian bullseye/main amd64 node-diff all 4.0.2~dfsg-2 [65.0 kB] Get:351 http://deb.debian.org/debian bullseye/main amd64 node-p-limit all 3.1.0+~cs2.3.0-1 [6904 B] Get:352 http://deb.debian.org/debian bullseye/main amd64 node-p-locate all 5.0.0-1 [5080 B] Get:353 http://deb.debian.org/debian bullseye/main amd64 node-path-exists all 4.0.0-2 [3840 B] Get:354 http://deb.debian.org/debian bullseye/main amd64 node-locate-path all 6.0.0-1 [5264 B] Get:355 http://deb.debian.org/debian bullseye/main amd64 node-find-up all 5.0.0-1 [5840 B] Get:356 http://deb.debian.org/debian bullseye/main amd64 node-fs.realpath all 1.0.0-1.1 [5780 B] Get:357 http://deb.debian.org/debian bullseye/main amd64 node-wrappy all 1.0.2-1.1 [3352 B] Get:358 http://deb.debian.org/debian bullseye/main amd64 node-once all 1.4.0-3 [4344 B] Get:359 http://deb.debian.org/debian bullseye/main amd64 node-inflight all 1.0.6-1.1 [3568 B] Get:360 http://deb.debian.org/debian bullseye/main amd64 node-balanced-match all 1.0.0-1 [4528 B] Get:361 http://deb.debian.org/debian bullseye/main amd64 node-brace-expansion all 2.0.0-1 [7184 B] Get:362 http://deb.debian.org/debian bullseye/main amd64 node-minimatch all 3.0.4+~3.0.3-1+deb11u2 [16.1 kB] Get:363 http://deb.debian.org/debian bullseye/main amd64 node-glob all 7.1.6+~7.1.3-1 [129 kB] Get:364 http://deb.debian.org/debian bullseye/main amd64 node-growl all 1.10.5-2 [7356 B] Get:365 http://deb.debian.org/debian bullseye/main amd64 node-he all 1.2.0-1 [36.7 kB] Get:366 http://deb.debian.org/debian bullseye/main amd64 node-is-plain-obj all 3.0.0-1 [3916 B] Get:367 http://deb.debian.org/debian bullseye/main amd64 node-sprintf-js all 1.1.2+ds1-2 [1836 B] Get:368 http://deb.debian.org/debian bullseye/main amd64 node-argparse all 2.0.1-1 [34.5 kB] Get:369 http://deb.debian.org/debian bullseye/main amd64 node-esprima all 4.0.1+ds+~4.0.2-2 [69.0 kB] Get:370 http://deb.debian.org/debian bullseye/main amd64 node-js-yaml all 3.14.1+dfsg+~3.12.6-2 [44.8 kB] Get:371 http://deb.debian.org/debian bullseye/main amd64 node-safe-buffer all 5.2.1+~cs2.1.2-1 [15.5 kB] Get:372 http://deb.debian.org/debian bullseye/main amd64 node-randombytes all 2.1.0-1 [4104 B] Get:373 http://deb.debian.org/debian bullseye/main amd64 node-serialize-javascript all 5.0.1-2 [11.5 kB] Get:374 http://deb.debian.org/debian bullseye/main amd64 node-strip-json-comments all 3.1.1-1 [5168 B] Get:375 http://deb.debian.org/debian bullseye/main amd64 node-isexe all 2.0.0-5 [4632 B] Get:376 http://deb.debian.org/debian bullseye/main amd64 node-which all 2.0.2+~cs1.3.2-1 [8436 B] Get:377 http://deb.debian.org/debian bullseye/main amd64 node-ansi-regex all 5.0.1-1~deb11u1 [4704 B] Get:378 http://deb.debian.org/debian bullseye/main amd64 node-strip-ansi all 6.0.0-2 [4044 B] Get:379 http://deb.debian.org/debian bullseye/main amd64 node-clone all 2.1.2-2 [8132 B] Get:380 http://deb.debian.org/debian bullseye/main amd64 node-defaults all 1.0.3-2 [3612 B] Get:381 http://deb.debian.org/debian bullseye/main amd64 node-wcwidth.js all 1.0.0-1.1 [6652 B] Get:382 http://deb.debian.org/debian bullseye/main amd64 node-string-width all 4.2.0-1 [9716 B] Get:383 http://deb.debian.org/debian bullseye/main amd64 node-wide-align all 1.1.3-1 [3896 B] Get:384 http://deb.debian.org/debian bullseye/main amd64 node-require-directory all 2.1.1-1.1 [5596 B] Get:385 http://deb.debian.org/debian bullseye/main amd64 node-get-caller-file all 1.0.2-1.1 [3056 B] Get:386 http://deb.debian.org/debian bullseye/main amd64 node-set-blocking all 2.0.0-1.1 [4036 B] Get:387 http://deb.debian.org/debian bullseye/main amd64 node-require-main-filename all 2.0.0-1 [4108 B] Get:388 http://deb.debian.org/debian bullseye/main amd64 node-wrap-ansi all 4.0.0-2 [5540 B] Get:389 http://deb.debian.org/debian bullseye/main amd64 node-cliui all 4.1.0-2 [7964 B] Get:390 http://deb.debian.org/debian bullseye/main amd64 node-which-module all 2.0.0-1 [3792 B] Get:391 http://deb.debian.org/debian bullseye/main amd64 node-end-of-stream all 1.4.4-1 [4356 B] Get:392 http://deb.debian.org/debian bullseye/main amd64 node-pump all 3.0.0-4 [4936 B] Get:393 http://deb.debian.org/debian bullseye/main amd64 node-get-stream all 6.0.0-1 [7172 B] Get:394 http://deb.debian.org/debian bullseye/main amd64 node-is-stream all 2.0.0-1 [4004 B] Get:395 http://deb.debian.org/debian bullseye/main amd64 node-merge-stream all 2.0.0+~1.1.2-1 [5036 B] Get:396 http://deb.debian.org/debian bullseye/main amd64 node-mimic-fn all 3.1.0-1 [5180 B] Get:397 http://deb.debian.org/debian bullseye/main amd64 node-npm-run-path all 2.0.2-2 [4412 B] Get:398 http://deb.debian.org/debian bullseye/main amd64 node-shebang-regex all 3.0.0-1 [3352 B] Get:399 http://deb.debian.org/debian bullseye/main amd64 node-shebang-command all 1.2.0-1.1 [3132 B] Get:400 http://deb.debian.org/debian bullseye/main amd64 node-signal-exit all 3.0.3-1 [6172 B] Get:401 http://deb.debian.org/debian bullseye/main amd64 node-execa all 4.1.0+dfsg+~cs19.3.6-5 [28.1 kB] Get:402 http://deb.debian.org/debian bullseye/main amd64 node-invert-kv all 3.0.1-1 [3904 B] Get:403 http://deb.debian.org/debian bullseye/main amd64 node-lcid all 3.1.1-1 [5280 B] Get:404 http://deb.debian.org/debian bullseye/main amd64 node-mem all 1.1.0-1.1 [4308 B] Get:405 http://deb.debian.org/debian bullseye/main amd64 node-os-locale all 5.0.0-1 [4876 B] Get:406 http://deb.debian.org/debian bullseye/main amd64 node-y18n all 4.0.0-4 [6256 B] Get:407 http://deb.debian.org/debian bullseye/main amd64 node-yargs-parser all 18.1.3+~15.0.0-1 [24.0 kB] Get:408 http://deb.debian.org/debian bullseye/main amd64 node-yargs all 15.3.1+repack-2 [109 kB] Get:409 http://deb.debian.org/debian bullseye/main amd64 mocha all 8.2.1+ds1+~cs29.4.27-3 [157 kB] Get:410 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get:411 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get:412 http://deb.debian.org/debian bullseye/main amd64 python3-humanfriendly all 9.1-1 [84.6 kB] Get:413 http://deb.debian.org/debian bullseye/main amd64 python3-coloredlogs all 7.3-2 [28.0 kB] Get:414 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:415 http://deb.debian.org/debian bullseye/main amd64 python3-future all 0.18.2-5 [349 kB] Get:416 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:417 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:418 http://deb.debian.org/debian bullseye/main amd64 python3-lzstring all 1.0.4-1.1 [5456 B] Get:419 http://deb.debian.org/debian bullseye/main amd64 python3-markdown all 3.3.4-1 [71.4 kB] Get:420 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:421 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:422 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:423 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:424 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:425 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:426 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:427 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:428 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:429 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:430 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get:431 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:432 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:433 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:434 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:435 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:436 http://deb.debian.org/debian bullseye/main amd64 python3-simplejson amd64 3.17.2-1 [61.7 kB] Get:437 http://deb.debian.org/debian bullseye/main amd64 python3-colormath all 3.0.0-1.1 [35.3 kB] Get:438 http://deb.debian.org/debian bullseye/main amd64 python3-spectra all 0.0.11-2 [16.4 kB] Get:439 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:440 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:441 http://deb.debian.org/debian bullseye/main amd64 multiqc all 1.9+dfsg-3 [554 kB] Get:442 http://deb.debian.org/debian bullseye/main amd64 node-object-assign all 4.1.1-3 [4460 B] Get:443 http://deb.debian.org/debian bullseye/main amd64 node-util all 0.10.3-4 [2960 B] Get:444 http://deb.debian.org/debian bullseye/main amd64 node-assert all 1.5.0-1 [8892 B] Get:445 http://deb.debian.org/debian bullseye/main amd64 node-commander all 6.2.1-2 [38.3 kB] Get:446 http://deb.debian.org/debian bullseye/main amd64 node-d3-array all 1.2.4-3 [19.2 kB] Get:447 http://deb.debian.org/debian bullseye/main amd64 node-d3-axis all 1.0.12-3 [10.1 kB] Get:448 http://deb.debian.org/debian bullseye/main amd64 node-d3-dispatch all 1.0.6-2 [7856 B] Get:449 http://deb.debian.org/debian bullseye/main amd64 node-d3-selection all 1.4.0-6 [30.7 kB] Get:450 http://deb.debian.org/debian bullseye/main amd64 node-d3-drag all 1.2.5-2 [13.9 kB] Get:451 http://deb.debian.org/debian bullseye/main amd64 node-d3-color all 1.2.8-2 [15.0 kB] Get:452 http://deb.debian.org/debian bullseye/main amd64 node-d3-interpolate all 1.4.0-2 [18.5 kB] Get:453 http://deb.debian.org/debian bullseye/main amd64 node-d3-ease all 1.0.5-3 [9932 B] Get:454 http://deb.debian.org/debian bullseye/main amd64 node-d3-timer all 1.0.10-1 [8608 B] Get:455 http://deb.debian.org/debian bullseye/main amd64 node-d3-transition all 1.3.2-3 [22.2 kB] Get:456 http://deb.debian.org/debian bullseye/main amd64 node-d3-brush all 1.1.5-2 [181 kB] Get:457 http://deb.debian.org/debian bullseye/main amd64 node-d3-path all 1.0.9-2 [8212 B] Get:458 http://deb.debian.org/debian bullseye/main amd64 node-d3-chord all 1.0.6-3 [10.0 kB] Get:459 http://deb.debian.org/debian bullseye/main amd64 node-d3-collection all 1.0.7-3 [11.7 kB] Get:460 http://deb.debian.org/debian bullseye/main amd64 node-d3-contour all 1.3.2-4 [13.6 kB] Get:461 http://deb.debian.org/debian bullseye/main amd64 node-iconv-lite all 0.5.1-3 [128 kB] Get:462 http://deb.debian.org/debian bullseye/main amd64 node-d3-queue all 3.0.7-11 [9828 B] Get:463 http://deb.debian.org/debian bullseye/main amd64 node-rw all 1.3.3-2 [7096 B] Get:464 http://deb.debian.org/debian bullseye/main amd64 node-d3-dsv all 1.1.1-5 [14.5 kB] Get:465 http://deb.debian.org/debian bullseye/main amd64 node-d3-fetch all 1.2.0-1 [7344 B] Get:466 http://deb.debian.org/debian bullseye/main amd64 node-d3-quadtree all 1.0.7-2 [13.1 kB] Get:467 http://deb.debian.org/debian bullseye/main amd64 node-d3-force all 1.2.1-2 [368 kB] Get:468 http://deb.debian.org/debian bullseye/main amd64 node-d3-format all 1:1.4.1-3 [9004 B] Get:469 http://deb.debian.org/debian bullseye/main amd64 node-d3-geo all 1.11.9-4 [53.6 kB] Get:470 http://deb.debian.org/debian bullseye/main amd64 node-d3-hierarchy all 1.1.8-3 [28.6 kB] Get:471 http://deb.debian.org/debian bullseye/main amd64 node-d3-polygon all 1.0.5-3 [7396 B] Get:472 http://deb.debian.org/debian bullseye/main amd64 node-d3-random all 1.1.2-3 [7184 B] Get:473 http://deb.debian.org/debian bullseye/main amd64 node-d3-time all 1.0.11-4 [14.6 kB] Get:474 http://deb.debian.org/debian bullseye/main amd64 node-d3-time-format all 2.1.3-3 [18.9 kB] Get:475 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale all 2.2.2-3 [31.5 kB] Get:476 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale-chromatic all 1.5.0-2 [18.5 kB] Get:477 http://deb.debian.org/debian bullseye/main amd64 node-d3-shape all 1.3.7-2 [40.4 kB] Get:478 http://deb.debian.org/debian bullseye/main amd64 node-d3-voronoi all 1.1.4-3 [17.1 kB] Get:479 http://deb.debian.org/debian bullseye/main amd64 node-d3-zoom all 1.8.3-2 [20.1 kB] Get:480 http://deb.debian.org/debian bullseye/main amd64 node-d3 all 5.16.0-4 [208 kB] Get:481 http://deb.debian.org/debian bullseye/main amd64 node-lodash all 4.17.21+dfsg+~cs8.31.173-1 [385 kB] Get:482 http://deb.debian.org/debian bullseye/main amd64 node-graphlibrary all 2.2.0+really2.1.8+dfsg-3 [53.2 kB] Get:483 http://deb.debian.org/debian bullseye/main amd64 node-dagre-layout all 0.8.8+really0.8.5+dfsg-4 [42.4 kB] Get:484 http://deb.debian.org/debian bullseye/main amd64 node-dagre-d3-renderer all 0.6.4+dfsg-3 [601 kB] Get:485 http://deb.debian.org/debian bullseye/main amd64 node-highlight.js all 9.18.5+dfsg1-1 [333 kB] Get:486 http://deb.debian.org/debian bullseye/main amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:487 http://deb.debian.org/debian bullseye/main amd64 pandoc-data all 2.9.2.1-1+deb11u1 [377 kB] Get:488 http://deb.debian.org/debian bullseye/main amd64 pandoc amd64 2.9.2.1-1+deb11u1 [18.5 MB] Get:489 http://deb.debian.org/debian bullseye/main amd64 pandoc-citeproc amd64 0.17.0.1-1+b2 [14.2 MB] Get:490 http://deb.debian.org/debian bullseye/main amd64 python3-appdirs all 1.4.4-1 [12.7 kB] Get:491 http://deb.debian.org/debian bullseye/main amd64 python3-configargparse all 1.2.3-1 [25.2 kB] Get:492 http://deb.debian.org/debian bullseye/main amd64 python3-datrie amd64 0.8.2-1+b1 [98.5 kB] Get:493 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get:494 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get:495 http://deb.debian.org/debian bullseye/main amd64 python3-smmap all 4.0.0-1 [21.0 kB] Get:496 http://deb.debian.org/debian bullseye/main amd64 python3-gitdb all 4.0.5-1 [46.5 kB] Get:497 http://deb.debian.org/debian bullseye/main amd64 python3-git all 3.1.14-1 [119 kB] Get:498 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:499 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:500 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:501 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:502 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:503 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get:504 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get:505 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:506 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:507 http://deb.debian.org/debian bullseye/main amd64 python3-jupyter-core all 4.7.1-1+deb11u1 [44.2 kB] Get:508 http://deb.debian.org/debian bullseye/main amd64 python3-nbformat all 5.1.2-1 [51.6 kB] Get:509 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get:510 http://deb.debian.org/debian bullseye/main amd64 python3-pulp all 1.6.0+dfsg1-5 [54.0 kB] Get:511 http://deb.debian.org/debian bullseye/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get:512 http://deb.debian.org/debian bullseye/main amd64 python3-toposort all 1.6-1 [7620 B] Get:513 http://deb.debian.org/debian bullseye/main amd64 python3-wrapt amd64 1.12.1-4+b1 [39.3 kB] Get:514 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:515 http://deb.debian.org/debian bullseye/main amd64 snakemake all 5.24.1-2 [6107 kB] Get:516 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:517 http://deb.debian.org/debian bullseye/main amd64 python3-deeptoolsintervals amd64 0.1.9-3+b2 [50.6 kB] Get:518 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get:519 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get:520 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get:521 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:522 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get:523 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get:524 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get:525 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:526 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get:527 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get:528 http://deb.debian.org/debian bullseye/main amd64 python3-numpydoc all 1.1.0-3 [40.0 kB] Get:529 http://deb.debian.org/debian bullseye/main amd64 python3-retrying all 1.3.3-4 [8876 B] Get:530 http://deb.debian.org/debian bullseye/main amd64 python3-plotly all 4.14.3+dfsg-1 [2450 kB] Get:531 http://deb.debian.org/debian bullseye/main amd64 python3-py2bit amd64 0.3.0-6+b1 [18.3 kB] Get:532 http://deb.debian.org/debian bullseye/main amd64 python3-pybigwig amd64 0.3.17-1+b4 [35.8 kB] Get:533 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get:534 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:535 http://deb.debian.org/debian bullseye/main amd64 python3-deeptools all 3.5.0-1 [158 kB] Get:536 http://deb.debian.org/debian bullseye/main amd64 salmon amd64 1.4.0+ds1-1+b4 [2221 kB] Get:537 http://deb.debian.org/debian bullseye/main amd64 rna-star amd64 2.7.8a+dfsg-2 [1279 kB] Get:538 http://deb.debian.org/debian bullseye/main amd64 trim-galore all 0.6.6-1 [17.8 MB] Get:539 http://deb.debian.org/debian bullseye/main amd64 python3-htseq amd64 0.13.5-1 [221 kB] Get:540 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:541 http://deb.debian.org/debian bullseye/main amd64 r-bioc-s4vectors amd64 0.28.1-1 [2027 kB] Get:542 http://deb.debian.org/debian bullseye/main amd64 r-bioc-iranges amd64 2.24.1-1 [2202 kB] Get:543 http://deb.debian.org/debian bullseye/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get:544 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get:545 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:546 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get:547 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:548 http://deb.debian.org/debian bullseye/main amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get:549 http://deb.debian.org/debian bullseye/main amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get:550 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1856 kB] Get:551 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get:552 http://deb.debian.org/debian bullseye/main amd64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get:553 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biobase amd64 2.50.0-1 [2229 kB] Get:554 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:555 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:556 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1798 kB] Get:557 http://deb.debian.org/debian bullseye/main amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get:558 http://deb.debian.org/debian bullseye/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get:559 http://deb.debian.org/debian bullseye/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:560 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:561 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:562 http://deb.debian.org/debian bullseye/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:563 http://deb.debian.org/debian bullseye/main amd64 r-cran-bh all 1.74.0-1 [5196 B] Get:564 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocparallel amd64 1.24.1-1 [1143 kB] Get:565 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbi all 1.1.1-1 [619 kB] Get:566 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit amd64 4.0.4+dfsg-1 [422 kB] Get:567 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:568 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get:569 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:570 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get:571 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:572 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get:573 http://deb.debian.org/debian bullseye/main amd64 r-cran-blob all 1.2.1-2 [49.1 kB] Get:574 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastmap amd64 1.1.0-1 [64.7 kB] Get:575 http://deb.debian.org/debian bullseye/main amd64 r-cran-cachem amd64 1.0.3-1 [61.4 kB] Get:576 http://deb.debian.org/debian bullseye/main amd64 r-cran-memoise all 2.0.0-1 [52.9 kB] Get:577 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:578 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get:579 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get:580 http://deb.debian.org/debian bullseye/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get:581 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsqlite amd64 2.2.3-1 [1035 kB] Get:582 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotationdbi all 1.52.0-1 [4707 kB] Get:583 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml amd64 3.99-0.5-1 [1722 kB] Get:584 http://deb.debian.org/debian bullseye/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:585 http://deb.debian.org/debian bullseye/main amd64 r-cran-curl amd64 4.3+dfsg-1+b1 [151 kB] Get:586 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:587 http://deb.debian.org/debian bullseye/main amd64 r-cran-mime amd64 0.9-1+b1 [35.5 kB] Get:588 http://deb.debian.org/debian bullseye/main amd64 r-cran-sys amd64 3.4-1 [42.9 kB] Get:589 http://deb.debian.org/debian bullseye/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB] Get:590 http://deb.debian.org/debian bullseye/main amd64 r-cran-openssl amd64 1.4.3+dfsg-2 [376 kB] Get:591 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get:592 http://deb.debian.org/debian bullseye/main amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:593 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotate all 1.68.0+dfsg-1 [2103 kB] Get:594 http://deb.debian.org/debian bullseye/main amd64 r-cran-survival amd64 3.2-7-1 [7631 kB] Get:595 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genefilter amd64 1.72.1-1 [1154 kB] Get:596 http://deb.debian.org/debian bullseye/main amd64 r-cran-locfit amd64 1.5-9.4-2+b1 [508 kB] Get:597 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get:598 http://deb.debian.org/debian bullseye/main amd64 r-bioc-geneplotter all 1.68.0-1 [1551 kB] Get:599 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:600 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get:601 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get:602 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get:603 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get:604 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:605 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get:606 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get:607 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get:608 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get:609 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get:610 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:611 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get:612 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:613 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get:614 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get:615 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get:616 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:617 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get:618 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get:619 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:620 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:621 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get:622 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get:623 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get:624 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get:625 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get:626 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get:627 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get:628 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get:629 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get:630 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get:631 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:632 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get:633 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:634 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get:635 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get:636 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get:637 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpparmadillo amd64 0.10.2.1.0-1 [1149 kB] Get:638 http://deb.debian.org/debian bullseye/main amd64 r-bioc-deseq2 amd64 1.30.1+dfsg-1 [1296 kB] Get:639 http://deb.debian.org/debian bullseye/main amd64 r-bioc-tximport all 1.18.0+dfsg-1 [86.2 kB] Get:640 http://deb.debian.org/debian bullseye/main amd64 r-cran-data.table amd64 1.13.6+dfsg-1 [1715 kB] Get:641 http://deb.debian.org/debian bullseye/main amd64 r-cran-highr all 0.8+dfsg-2 [40.1 kB] Get:642 http://deb.debian.org/debian bullseye/main amd64 r-cran-xfun amd64 0.20-1 [288 kB] Get:643 http://deb.debian.org/debian bullseye/main amd64 r-cran-markdown amd64 1.1+dfsg-1+b1 [125 kB] Get:644 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:645 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:646 http://deb.debian.org/debian bullseye/main amd64 r-cran-yaml amd64 2.2.1-1+b1 [104 kB] Get:647 http://deb.debian.org/debian bullseye/main amd64 r-cran-knitr all 1.31+dfsg-1 [833 kB] Get:648 http://deb.debian.org/debian bullseye/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:649 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmltools amd64 0.5.1.1-1 [241 kB] Get:650 http://deb.debian.org/debian bullseye/main amd64 r-cran-tinytex all 0.29-1 [118 kB] Get:651 http://deb.debian.org/debian bullseye/main amd64 r-cran-later amd64 1.1.0.1+dfsg-1 [119 kB] Get:652 http://deb.debian.org/debian bullseye/main amd64 r-cran-promises amd64 1.1.1+dfsg-1 [172 kB] Get:653 http://deb.debian.org/debian bullseye/main amd64 r-cran-httpuv amd64 1.5.5+dfsg-1 [491 kB] Get:654 http://deb.debian.org/debian bullseye/main amd64 r-cran-sourcetools amd64 0.1.7-3 [45.3 kB] Get:655 http://deb.debian.org/debian bullseye/main amd64 r-cran-commonmark amd64 1.7-2 [111 kB] Get:656 http://deb.debian.org/debian bullseye/main amd64 r-cran-shiny all 1.5.0+dfsg-2 [3599 kB] Get:657 http://deb.debian.org/debian bullseye/main amd64 r-cran-rmarkdown all 2.6+dfsg-1 [2160 kB] Get:658 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggrepel amd64 0.9.1-1 [375 kB] Get:659 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmlwidgets all 1.5.3+dfsg-1 [124 kB] Get:660 http://deb.debian.org/debian bullseye/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB] Get:661 http://deb.debian.org/debian bullseye/main amd64 r-cran-crosstalk all 1.1.1+dfsg-2 [167 kB] Get:662 http://deb.debian.org/debian bullseye/main amd64 r-cran-dt all 0.17+dfsg-3 [209 kB] Get:663 http://deb.debian.org/debian bullseye/main amd64 r-cran-pheatmap all 1.0.12-2 [77.9 kB] Get:664 http://deb.debian.org/debian bullseye/main amd64 r-cran-corrplot all 0.84-3 [103 kB] Get:665 http://deb.debian.org/debian bullseye/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get:666 http://deb.debian.org/debian bullseye/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:667 http://deb.debian.org/debian bullseye/main amd64 r-cran-generics all 0.1.0-1 [73.5 kB] Get:668 http://deb.debian.org/debian bullseye/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get:669 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1 [192 kB] Get:670 http://deb.debian.org/debian bullseye/main amd64 r-cran-dplyr amd64 1.0.4-1 [1143 kB] Get:671 http://deb.debian.org/debian bullseye/main amd64 r-cran-cpp11 all 0.2.6-1 [144 kB] Get:672 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyr amd64 1.1.2-1 [786 kB] Get:673 http://deb.debian.org/debian bullseye/main amd64 r-cran-miniui all 0.1.1.1-3 [35.9 kB] Get:674 http://deb.debian.org/debian bullseye/main amd64 r-cran-shinyjs all 2.0.0-1 [1028 kB] Get:675 http://deb.debian.org/debian bullseye/main amd64 r-cran-colourpicker all 1.1.0+dfsg-1 [1727 kB] Get:676 http://deb.debian.org/debian bullseye/main amd64 r-cran-plotly all 4.9.3+dfsg-2 [3266 kB] Get:677 http://deb.debian.org/debian bullseye/main amd64 r-cran-gprofiler all 0.7.0-2 [42.6 kB] Get:678 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get:679 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1024 kB] Get:680 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rsamtools amd64 2.6.0-1 [3659 kB] Get:681 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2196 kB] Get:682 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rtracklayer amd64 1.50.0-1 [7467 kB] Get:683 http://deb.debian.org/debian bullseye/main amd64 r-cran-rjson amd64 0.2.20-2 [127 kB] Get:684 http://deb.debian.org/debian bullseye/main amd64 pigx-rnaseq all 0.0.10+ds-2 [54.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 485 MB in 16s (30.8 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6675 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../03-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../05-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package node-normalize.css. Preparing to unpack .../06-node-normalize.css_8.0.1-3_all.deb ... Unpacking node-normalize.css (8.0.1-3) ... Selecting previously unselected package pigz. Preparing to unpack .../07-pigz_2.6-1_amd64.deb ... Unpacking pigz (2.6-1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../08-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../09-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../10-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8992 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../07-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../09-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../10-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../11-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9454 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package ucf. Preparing to unpack .../005-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../006-libnspr4_2%3a4.29-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.29-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../007-libnss3_2%3a3.61-1+deb11u3_amd64.deb ... Unpacking libnss3:amd64 (2:3.61-1+deb11u3) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../008-ca-certificates-java_20190909+deb11u1_all.deb ... Unpacking ca-certificates-java (20190909+deb11u1) ... Selecting previously unselected package java-common. Preparing to unpack .../009-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../010-libavahi-common-data_0.8-5+deb11u2_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5+deb11u2) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../011-libavahi-common3_0.8-5+deb11u2_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5+deb11u2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../012-libdbus-1-3_1.12.28-0+deb11u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../013-libavahi-client3_0.8-5+deb11u2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5+deb11u2) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../014-libcups2_2.3.3op2-3+deb11u6_amd64.deb ... Unpacking libcups2:amd64 (2.3.3op2-3+deb11u6) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../015-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../016-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../017-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../018-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../019-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... 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Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up node-sprintf-js (1.1.2+ds1-2) ... Setting up libjaxen-java (1.1.6-4) ... Setting up node-shebang-regex (3.0.0-1) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libbibutils7 (6.10-2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5+deb11u2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up node-is-stream (2.0.0-1) ... Setting up libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libatomic1:amd64 (10.2.1-6) ... Setting up libxz-java (1.8-2) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libjbzip2-java (0.9.1-5) ... Setting up libngs-sdk-dev:amd64 (2.10.9-1) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libactivation-java (1.2.0-2) ... Setting up libglapi-mesa:amd64 (20.3.5-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libvulkan1:amd64 (1.2.162.0-1) ... Setting up libubsan1:amd64 (10.2.1-6) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libjs-highlight.js (9.18.5+dfsg1-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libjs-d3-format (1:1.4.1-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libjsoup-java (1.10.2-2) ... Setting up pigz (2.6-1) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up node-esprima (4.0.1+ds+~4.0.2-2) ... Setting up libplexus-sec-dispatcher-java (1.4-4) ... Setting up git-man (1:2.30.2-1+deb11u2) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up sgml-base (1.30) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libhttpcore-java (4.4.14-1) ... Setting up pandoc-data (2.9.2.1-1+deb11u1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libngs-java:amd64 (2.10.9-1) ... Setting up libc-dev-bin (2.31-13+deb11u8) ... Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up libdrm-common (2.4.104-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up node-is-buffer (2.0.5-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libargs4j-java (2.33-1.1) ... Setting up liblsan0:amd64 (10.2.1-6) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up node-is-plain-obj (3.0.0-1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libdom4j-java (2.1.3-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libwagon-provider-api-java (3.3.4-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libbigwig0:amd64 (0.4.4+dfsg-2) ... Setting up libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Setting up libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Setting up libjs-jquery-datatables (1.10.21+dfsg-2+deb11u1) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libcommons-jexl2-java (2.1.1-5) ... Setting up coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libmaven-resolver-java (1.4.2-3) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up pandoc (2.9.2.1-1+deb11u1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libjs-jquery-metadata (12-3) ... Setting up shared-mime-info (2.0-1) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up libcommons-lang3-java (3.11-1) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up librngom-java (2.3.0.1-10) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Setting up xml-core (0.18+nmu1) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libc6-dev:amd64 (2.31-13+deb11u8) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Setting up libsis-jhdf5-jni (19.04.0+dfsg-4) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libxsom-java (2.3.0.1-10) ... Setting up libstaden-read14:amd64 (1.14.13-4) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Setting up pandoc-citeproc (0.17.0.1-1+b2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.20-1) ... Setting up libcommons-io-java (2.8.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up nodejs (12.22.12~dfsg-1~deb11u4) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up rna-star (2.7.8a+dfsg-2) ... Setting up libguice-java (4.2.3-2) ... Setting up node-argparse (2.0.1-1) ... Setting up node-d3-path (1.0.9-2) ... Setting up node-he (1.2.0-1) ... Setting up samtools (1.11-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up node-clone (2.1.2-2) ... Setting up node-has-flag (4.0.0-1) ... Setting up salmon (1.4.0+ds1-1+b4) ... Setting up node-inherits (2.0.4-1) ... Setting up node-path-is-absolute (2.0.0-1) ... Setting up node-iconv-lite (0.5.1-3) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up node-safe-buffer (5.2.1+~cs2.1.2-1) ... Setting up node-d3-polygon (1.0.5-3) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up node-y18n (4.0.0-4) ... Setting up node-d3-quadtree (1.0.7-2) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up node-balanced-match (1.0.0-1) ... Setting up node-brace-expansion (2.0.0-1) ... Setting up libnotify4:amd64 (0.7.9-3) ... Setting up coinor-libclp1 (1.17.5+repack1-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up node-set-blocking (2.0.0-1.1) ... Setting up node-repeat-string (1.6.1-1) ... Setting up node-d3-collection (1.0.7-3) ... Setting up node-signal-exit (3.0.3-1) ... Setting up node-randombytes (2.1.0-1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up node-wrappy (1.0.2-1.1) ... Setting up node-d3-voronoi (1.1.4-3) ... Setting up node-require-directory (2.1.1-1.1) ... Setting up node-d3-dispatch (1.0.6-2) ... Setting up node-d3-time (1.0.11-4) ... Setting up libnotify-bin (0.7.9-3) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up node-defaults (1.0.3-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Setting up node-commander (6.2.1-2) ... Setting up node-d3-array (1.2.4-3) ... Setting up libhttpclient-java (4.5.13-2) ... Setting up node-graceful-fs (4.2.4+repack-1) ... Setting up node-merge-stream (2.0.0+~1.1.2-1) ... Setting up node-binary-extensions (2.2.0-1) ... Setting up node-mimic-fn (3.1.0-1) ... Setting up node-path-dirname (1.0.2-1.1) ... Setting up libwagon-http-java (3.3.4-1) ... Setting up libmaven-shared-utils-java (3.3.0-1+deb11u1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up node-minimatch (3.0.4+~3.0.3-1+deb11u2) ... Setting up coinor-libcgl1 (0.60.3+repack1-2) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up node-d3-geo (1.11.9-4) ... Setting up node-set-immediate-shim (2.0.0-1) ... Setting up node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Setting up mailcap (3.69) ... Setting up node-npm-run-path (2.0.2-2) ... Setting up node-color-convert (1.9.3-1) ... Setting up node-lodash (4.17.21+dfsg+~cs8.31.173-1) ... Setting up node-d3-random (1.1.2-3) ... Setting up node-async-each (1.0.3-1) ... Setting up python3.9 (3.9.2-1) ... Setting up node-is-extglob (2.1.1-1) ... Setting up node-ms (2.1.3+~cs0.7.31-1) ... Setting up node-shebang-command (1.2.0-1.1) ... Setting up node-ansi-colors (4.1.1-2) ... Setting up r-cran-bh (1.74.0-1) ... Setting up node-fs.realpath (1.0.0-1.1) ... Setting up node-diff (4.0.2~dfsg-2) ... Setting up coinor-libcbc3:amd64 (2.10.5+ds1-3) ... Setting up node-d3-timer (1.0.10-1) ... Setting up node-highlight.js (9.18.5+dfsg1-1) ... Setting up node-object-assign (4.1.1-3) ... Setting up node-is-glob (4.0.1-1) ... Setting up node-d3-color (1.2.8-2) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up node-d3-interpolate (1.4.0-2) ... Setting up node-d3-queue (3.0.7-11) ... Setting up node-mem (1.1.0-1.1) ... Setting up libplexus-io-java (3.2.0-1.1) ... Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up node-supports-color (8.1.0+~7.2.0-1) ... Setting up node-invert-kv (3.0.1-1) ... Setting up node-d3-format (1:1.4.1-3) ... Setting up node-p-limit (3.1.0+~cs2.3.0-1) ... Setting up mime-support (3.66) ... Setting up node-ansi-regex (5.0.1-1~deb11u1) ... Setting up node-d3-hierarchy (1.1.8-3) ... Setting up node-d3-ease (1.0.5-3) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up node-strip-json-comments (3.1.1-1) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up node-once (1.4.0-3) ... Setting up node-browser-stdout (1.3.1-2) ... Setting up libmaven3-core-java (3.6.3-5) ... Setting up node-get-caller-file (1.0.2-1.1) ... Setting up node-require-main-filename (2.0.0-1) ... Setting up node-d3-time-format (2.1.3-3) ... Setting up libsis-jhdf5-java (19.04.0+dfsg-4) ... Setting up node-d3-scale-chromatic (1.5.0-2) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up node-serialize-javascript (5.0.1-2) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up node-isexe (2.0.0-5) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up node-path-exists (4.0.0-2) ... Setting up node-d3-chord (1.0.6-3) ... Setting up node-escape-string-regexp (4.0.0-1) ... Setting up node-p-locate (5.0.0-1) ... Setting up node-which-module (2.0.0-1) ... Setting up node-decamelize (4.0.0-1) ... Setting up node-normalize-path (3.0.0-2) ... Setting up node-kind-of (6.0.3+dfsg-1) ... Setting up node-growl (1.10.5-2) ... Setting up node-d3-selection (1.4.0-6) ... Setting up python3 (3.9.2-3) ... Setting up node-is-binary-path (2.1.0-1) ... Setting up node-debug (4.3.1+~cs4.1.5-1) ... Setting up libfindbin-libs-perl (2.190.02-1) ... Setting up libjs-util (0.10.3-4) ... Setting up node-camelcase (6.2.0-2) ... Setting up node-d3-axis (1.0.12-3) ... Setting up node-d3-shape (1.3.7-2) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up node-yargs-parser (18.1.3+~15.0.0-1) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up liberror-perl (0.17029-1) ... Setting up node-wcwidth.js (1.0.0-1.1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-simplejson (3.17.2-1) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up node-locate-path (6.0.0-1) ... Setting up python3-roman (2.0.0-5) ... Setting up node-d3-drag (1.2.5-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up node-rw (1.3.3-2) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up coinor-cbc (2.10.5+ds1-3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-humanfriendly (9.1-1) ... Setting up node-ansi-styles (4.2.1-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up node-d3-scale (2.2.2-3) ... Setting up python3-cycler (0.10.0-3) ... Setting up node-strip-ansi (6.0.0-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up node-chalk (4.1.0-1) ... Setting up git (1:2.30.2-1+deb11u2) ... Setting up node-which (2.0.2+~cs1.3.2-1) ... Setting up node-lcid (3.1.1-1) ... Setting up node-d3-force (1.2.1-2) ... Setting up node-d3-contour (1.3.2-4) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up node-inflight (1.0.6-1.1) ... Setting up node-glob-parent (5.1.1+~5.1.0-2) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-py2bit (0.3.0-6+b1) ... Setting up python3-datrie:amd64 (0.8.2-1+b1) ... Setting up node-d3-dsv (1.1.1-5) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up node-anymatch (3.1.1+~2.2.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-coloredlogs (7.3-2) ... Setting up node-d3-transition (1.3.2-3) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-smmap (4.0.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up node-string-width (4.2.0-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-toposort (1.6-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-configargparse (1.2.3-1) ... Setting up python3-attr (20.3.0-1) ... Setting up node-is-number (7.0.0-1.1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up node-end-of-stream (1.4.4-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up node-pump (3.0.0-4) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-deeptoolsintervals (0.1.9-3+b2) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-pulp (1.6.0+dfsg1-5) ... /usr/lib/python3/dist-packages/pulp/pulp.py:700: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self /usr/lib/python3/dist-packages/pulp/pulp.py:720: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self Setting up python3-alabaster (0.7.8-1.1) ... Setting up node-d3-zoom (1.8.3-2) ... Setting up python3-retrying (1.3.3-4) ... Setting up node-find-up (5.0.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up node-d3-fetch (1.2.0-1) ... Setting up node-util (0.10.3-4) ... Setting up python3-gitdb (4.0.5-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.5+ds-2) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-xopen (1.1.0-1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up node-wrap-ansi (4.0.0-2) ... Setting up node-glob (7.1.6+~7.1.3-1) ... Setting up node-readdirp (3.5.0-2) ... Setting up python3-git (3.1.14-1) ... Setting up node-get-stream (6.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up python3-markdown (3.3.4-1) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up python3-colormath (3.0.0-1.1) ... Setting up r-cran-farver (2.0.3-1+b1) ... Setting up python3-pybigwig (0.3.17-1+b4) ... Setting up r-cran-formatr (1.7-2) ... Setting up node-assert (1.5.0-1) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up node-d3-brush (1.1.5-2) ... Setting up r-cran-locfit (1.5-9.4-2+b1) ... Setting up python3-traitlets (5.0.5-1) ... Setting up node-wide-align (1.1.3-1) ... Setting up r-cran-lazyeval (0.2.2-1+b1) ... Setting up r-cran-commonmark (1.7-2) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-lzstring (1.0.4-1.1) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up python3-htseq (0.13.5-1) ... Setting up python3-jupyter-core (4.7.1-1+deb11u1) ... Setting up node-cliui (4.1.0-2) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up python3-dnaio (0.5.0-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-curl (4.3+dfsg-1+b1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up node-to-regex-range (5.0.1-2) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up python3-scipy (1.6.0-2) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up littler (0.3.12-1) ... Setting up node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Setting up python3-spectra (0.0.11-2) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-xfun (0.20-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-mime (0.9-1+b1) ... Setting up r-cran-praise (1.0.0-4) ... Setting up r-cran-generics (0.1.0-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-yaml (2.2.1-1+b1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-highr (0.8+dfsg-2) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up node-d3 (5.16.0-4) ... Setting up r-cran-data.table (1.13.6+dfsg-1) ... Setting up r-cran-glue (1.4.2-1) ... Setting up node-os-locale (5.0.0-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-corrplot (0.84-3) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up python3-cutadapt (3.2-2) ... Setting up r-cran-markdown (1.1+dfsg-1+b1) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up r-cran-cpp11 (0.2.6-1) ... Setting up r-cran-plyr (1.8.6-2) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-purrr (0.3.4-1+b1) ... Setting up r-cran-later (1.1.0.1+dfsg-1) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-htmltools (0.5.1.1-1) ... Setting up r-cran-tinytex (0.29-1) ... Setting up r-bioc-tximport (1.18.0+dfsg-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-cran-cachem (1.0.3-1) ... Setting up r-cran-rcpparmadillo (0.10.2.1.0-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up r-cran-rjson (0.2.20-2) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up multiqc (1.9+dfsg-3) ... /usr/lib/python3/dist-packages/multiqc/modules/custom_content/custom_content.py:71: SyntaxWarning: "is not" with a literal. Did you mean "!="? cust_mods[c_id]['config'].update( { k:v for k, v in f.items() if k is not 'data' } ) Setting up node-fill-range (7.0.1-2) ... Setting up r-cran-openssl (1.4.3+dfsg-2) ... Setting up node-yargs (15.3.1+repack-2) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-cran-gprofiler (0.7.0-2) ... Setting up cutadapt (3.2-2) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-survival (3.2-7-1) ... Setting up python3-nbformat (5.1.2-1) ... Setting up r-cran-htmlwidgets (1.5.3+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-cran-promises (1.1.1+dfsg-1) ... Setting up python3-plotly (4.14.3+dfsg-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-knitr (1.31+dfsg-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up node-braces (3.0.2+~3.0.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up node-chokidar (3.4.3-3) ... Setting up r-cran-pheatmap (1.0.12-2) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up trim-galore (0.6.6-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-cran-httpuv (1.5.5+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-cran-shiny (1.5.0+dfsg-2) ... Setting up r-cran-shinyjs (2.0.0-1) ... Setting up r-cran-tidyselect (1.1.0+dfsg-1) ... Setting up r-cran-miniui (0.1.1.1-3) ... Setting up r-cran-rmarkdown (2.6+dfsg-1) ... Setting up r-cran-blob (1.2.1-2) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-cran-dplyr (1.0.4-1) ... Setting up r-cran-rsqlite (2.2.3-1) ... Setting up mocha (8.2.1+ds1+~cs29.4.27-3) ... Setting up r-cran-crosstalk (1.1.1+dfsg-2) ... Setting up r-cran-dt (0.17+dfsg-3) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.52.0-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Setting up r-bioc-annotate (1.68.0+dfsg-1) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-cran-tidyr (1.1.2-1) ... Setting up r-bioc-genefilter (1.72.1-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Setting up r-bioc-geneplotter (1.68.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up node-dagre-d3-renderer (0.6.4+dfsg-3) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-deseq2 (1.30.1+dfsg-1) ... Setting up r-cran-colourpicker (1.1.0+dfsg-1) ... Setting up r-cran-ggrepel (0.9.1-1) ... Setting up r-cran-plotly (4.9.3+dfsg-2) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.22+7-1~deb11u1) ... Setting up default-jre (2:1.11-72) ... Setting up ant (1.10.9-4) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up ant-optional (1.10.9-4) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Setting up libtxw2-java (2.3.0.1-10) ... Setting up libjaxb-java (2.3.0.1-10) ... Setting up libhtsjdk-java (2.23.0+dfsg-2) ... Setting up fastqc (0.11.9+dfsg-4) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up snakemake (5.24.1-2) ... Setting up python3-sphinx (3.4.3-2) ... Setting up python3-numpydoc (1.1.0-3) ... Setting up python3-deeptools (3.5.0-1) ... Setting up pigx-rnaseq (0.0.10+ds-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 2m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.0.10+ds-2'] 2m30.7s INFO: Running scripts post_install 2m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_install_exceptions'] 2m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_install_exceptions'] 2m30.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_install_log_alternatives'] 2m30.8s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=xdg-utils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/open open /usr/bin/xdg-open 50 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/xdg-open.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=nodejs: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --remove js /usr/bin/node LOG-ALTERNATIVES: dpkg=nodejs: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/js js /usr/bin/nodejs 200 --slave /usr/share/man/man1/js.1.gz js.1.gz /usr/share/man/man1/nodejs.1.gz LOG-ALTERNATIVES: dpkg=perl: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=mailcap: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --quiet --install /usr/bin/open open /usr/bin/run-mailcap 30 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/run-mailcap.1.gz LOG-ALTERNATIVES: dpkg=python3-babel: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/pybabel pybabel /usr/bin/pybabel-python3 200 LOG-ALTERNATIVES: dpkg=python3-future: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/futurize futurize /usr/bin/python3-futurize 300 LOG-ALTERNATIVES: dpkg=python3-future: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/pasteurize pasteurize /usr/bin/python3-pasteurize 300 LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-11-openjdk-amd64/bin/java 1111 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/jjs jjs /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs 1111 --slave /usr/share/man/man1/jjs.1.gz jjs.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/jjs.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool 1111 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rmid rmid /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid 1111 --slave /usr/share/man/man1/rmid.1.gz rmid.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/rmid.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry 1111 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/pack200 pack200 /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 1111 --slave /usr/share/man/man1/pack200.1.gz pack200.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/pack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/unpack200 unpack200 /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 1111 --slave /usr/share/man/man1/unpack200.1.gz unpack200.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/unpack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec 1111 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-11-openjdk-amd64/lib/jar.binfmt LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst-buildhtml rst-buildhtml /usr/share/docutils/scripts/python3/rst-buildhtml 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2html rst2html /usr/share/docutils/scripts/python3/rst2html 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2html4 rst2html4 /usr/share/docutils/scripts/python3/rst2html4 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2html5 rst2html5 /usr/share/docutils/scripts/python3/rst2html5 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2latex rst2latex /usr/share/docutils/scripts/python3/rst2latex 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2man rst2man /usr/share/docutils/scripts/python3/rst2man 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2odt rst2odt /usr/share/docutils/scripts/python3/rst2odt 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2odt_prepstyles rst2odt_prepstyles /usr/share/docutils/scripts/python3/rst2odt_prepstyles 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2pseudoxml rst2pseudoxml /usr/share/docutils/scripts/python3/rst2pseudoxml 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2s5 rst2s5 /usr/share/docutils/scripts/python3/rst2s5 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2xetex rst2xetex /usr/share/docutils/scripts/python3/rst2xetex 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rst2xml rst2xml /usr/share/docutils/scripts/python3/rst2xml 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=pigx-rnaseq=0.0.10+ds-2: /usr/bin/update-alternatives --install /usr/bin/rstpep2html rstpep2html /usr/share/docutils/scripts/python3/rstpep2html 30 2m30.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_install_log_alternatives'] 2m30.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 2m33.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 2m41.9s ERROR: WARN: Broken symlinks: /usr/share/doc/libjs-sprintf-js/examples/angular.min.js -> ../../../javascript/angular.js/angular.min.js (libjs-sprintf-js) /usr/lib/jvm/java-11-openjdk-amd64/lib/libatk-wrapper.so -> ../../../x86_64-linux-gnu/jni/libatk-wrapper.so (openjdk-11-jre:amd64) /usr/lib/jvm/java-11-openjdk-amd64/lib/security/blacklisted.certs -> /etc/java-11-openjdk/security/blacklisted.certs (openjdk-11-jre-headless:amd64) 2m42.0s INFO: /bin converted to /usr/bin by /usr merge 2m42.1s INFO: /lib converted to /usr/lib by /usr merge 2m42.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m42.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m42.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m42.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m42.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m42.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 2m42.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 2m42.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 2m42.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 2m42.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 2m42.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 2m42.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 2m42.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 2m42.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 2m42.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 2m42.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 2m42.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 2m42.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 2m42.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 2m42.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 2m42.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m42.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m42.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m42.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m42.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m42.1s INFO: /sbin converted to /usr/sbin by /usr merge 2m46.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', '-ac', '--ignore-obsolete'] 2m55.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', '-ac', '--ignore-obsolete'] 2m55.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m55.5s DUMP: 0.15.6 2m55.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m55.5s INFO: Running adequate version 0.15.6 now. 2m55.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'pigx-rnaseq'] 2m55.7s DUMP: pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/pigx_rnaseq.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py 2m55.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'pigx-rnaseq'] 2m55.7s ERROR: WARN: Inadequate results from running adequate! pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/pigx_rnaseq.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py 2m55.7s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 2m55.7s INFO: Running scripts pre_remove 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m55.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m55.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_exceptions'] 3m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/pre_remove_exceptions'] 3m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m18.8s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed ant ant 1.10.9-4 install ok installed ant-optional ant-optional 1.10.9-4 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed ca-certificates ca-certificates 20210119 install ok installed ca-certificates-java ca-certificates-java 20190909+deb11u1 install ok installed coinor-cbc coinor-cbc 2.10.5+ds1-3 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.5+ds1-3 install ok installed coinor-libcgl1 coinor-libcgl1 0.60.3+repack1-2 install ok installed coinor-libclp1 coinor-libclp1 1.17.5+repack1-1 install ok installed coinor-libcoinutils3v5 coinor-libcoinutils3v5 2.11.4+repack1-1 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed cutadapt cutadapt 3.2-2 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed default-jre default-jre 2:1.11-72 install ok installed default-jre-headless default-jre-headless 2:1.11-72 install ok installed diffutils diffutils 1:3.7-5 install ok installed docutils-common docutils-common 0.16+dfsg-4 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed fastqc fastqc 0.11.9+dfsg-4 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-2 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-lyx fonts-lyx 2.3.6-1 install ok installed fonts-mathjax 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installed libdrm2:amd64 libdrm2 2.4.104-1 install ok installed libdtd-parser-java libdtd-parser-java 1.2-1 install ok installed libedit2:amd64 libedit2 3.1-20191231-2+b1 install ok installed libelf1:amd64 libelf1 0.183-1 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-3 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfindbin-libs-perl libfindbin-libs-perl 2.190.02-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.2.1-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.2+dfsg-1+deb11u1 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.3-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libghc-pandoc-citeproc-data libghc-pandoc-citeproc-data 0.17.0.1-1 install ok installed libgif7:amd64 libgif7 5.1.9-2 install ok installed libgl1:amd64 libgl1 1.3.2-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 20.3.5-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 20.3.5-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u1 install ok installed libglvnd0:amd64 libglvnd0 1.3.2-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 20.3.5-1 install ok installed libglx0:amd64 libglx0 1.3.2-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libguava-java libguava-java 29.0-6 install ok installed libguice-java libguice-java 4.2.3-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-4+deb11u1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libhtscodecs2:amd64 libhtscodecs2 0.5-3 install ok installed libhtsjdk-java libhtsjdk-java 2.23.0+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.13-2 install ok installed libhttpcore-java libhttpcore-java 4.4.14-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libistack-commons-java libistack-commons-java 3.0.6-5 install ok installed libitm1:amd64 libitm1 10.2.1-6 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-10 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbzip2-java libjbzip2-java 0.9.1-5 install ok installed libjemalloc2:amd64 libjemalloc2 5.2.1-3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-d3-format libjs-d3-format 1:1.4.1-3 install ok installed libjs-es5-shim libjs-es5-shim 4.5.15-1 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-1 install ok installed libjs-inherits libjs-inherits 2.0.4-1 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.10.21+dfsg-2+deb11u1 install ok installed libjs-jquery-datatables-extensions libjs-jquery-datatables-extensions 0.0+git20150910.28fd64e+dfsg-5 install ok installed libjs-jquery-metadata libjs-jquery-metadata 12-3 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 1:2.31.3+dfsg1-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-8+deb11u2 install ok installed libjs-json libjs-json 0~20190826+~1.0.5-2 install ok installed libjs-mathjax libjs-mathjax 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libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-9 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libllvm11:amd64 libllvm11 1:11.0.1-2 install ok installed liblsan0:amd64 liblsan0 10.2.1-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-parent-java libmaven-parent-java 31-2 install ok installed libmaven-resolver-java libmaven-resolver-java 1.4.2-3 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-3 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.0-1+deb11u1 install ok installed libmaven3-core-java 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installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libplexus-archiver-java libplexus-archiver-java 3.6.0-2 install ok installed libplexus-cipher-java libplexus-cipher-java 1.8-2 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.6.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 2.1.0-1 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.26-1 install ok installed libplexus-io-java libplexus-io-java 3.2.0-1.1 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 1.4-4 install ok installed libplexus-utils2-java libplexus-utils2-java 3.3.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed 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libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstaden-read14:amd64 libstaden-read14 1.14.13-4 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.2.1-6 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1.1 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.11+dfsg-1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtk8.6:amd64 libtk8.6 8.6.11-2 install ok installed libtsan0:amd64 libtsan0 10.2.1-6 install ok installed libtxw2-java libtxw2-java 2.3.0.1-10 install ok installed libubsan1:amd64 libubsan1 10.2.1-6 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libuv1:amd64 libuv1 1.40.0-2 install ok installed libvulkan1:amd64 libvulkan1 1.2.162.0-1 install ok installed libwagon-http-java libwagon-http-java 3.3.4-1 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.3.4-1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2.1+deb11u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2.1+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.14-3 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.14-3 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.14-3 install ok installed libxcb-present0:amd64 libxcb-present0 1.14-3 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.14-3 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.5-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.10-1 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxsom-java libxsom-java 2.3.0.1-10 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libxz-java libxz-java 1.8-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libz3-4:amd64 libz3-4 4.8.10-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.10.209-2 install ok installed littler littler 0.3.12-1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mime-support mime-support 3.66 install ok installed mocha mocha 8.2.1+ds1+~cs29.4.27-3 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed multiqc multiqc 1.9+dfsg-3 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed node-ansi-colors node-ansi-colors 4.1.1-2 install ok installed node-ansi-regex node-ansi-regex 5.0.1-1~deb11u1 install ok installed node-ansi-styles node-ansi-styles 4.2.1-1 install ok installed node-anymatch node-anymatch 3.1.1+~2.2.2-1 install ok installed node-argparse node-argparse 2.0.1-1 install ok installed node-assert node-assert 1.5.0-1 install ok installed node-async-each node-async-each 1.0.3-1 install ok installed node-balanced-match node-balanced-match 1.0.0-1 install ok installed node-binary-extensions node-binary-extensions 2.2.0-1 install ok installed node-brace-expansion node-brace-expansion 2.0.0-1 install ok installed node-braces node-braces 3.0.2+~3.0.0-1 install ok installed node-browser-stdout node-browser-stdout 1.3.1-2 install ok installed node-camelcase node-camelcase 6.2.0-2 install ok installed node-chalk node-chalk 4.1.0-1 install ok installed node-chokidar node-chokidar 3.4.3-3 install ok installed node-cliui node-cliui 4.1.0-2 install ok installed node-clone node-clone 2.1.2-2 install ok installed node-color-convert node-color-convert 1.9.3-1 install ok installed node-color-name node-color-name 1.1.4+~1.1.1-1 install ok installed node-commander node-commander 6.2.1-2 install ok installed node-d3 node-d3 5.16.0-4 install ok installed node-d3-array node-d3-array 1.2.4-3 install ok installed node-d3-axis node-d3-axis 1.0.12-3 install ok installed node-d3-brush node-d3-brush 1.1.5-2 install ok installed node-d3-chord node-d3-chord 1.0.6-3 install ok installed node-d3-collection node-d3-collection 1.0.7-3 install ok installed node-d3-color node-d3-color 1.2.8-2 install ok installed node-d3-contour node-d3-contour 1.3.2-4 install ok installed node-d3-dispatch node-d3-dispatch 1.0.6-2 install ok installed node-d3-drag node-d3-drag 1.2.5-2 install ok installed node-d3-dsv node-d3-dsv 1.1.1-5 install ok installed node-d3-ease node-d3-ease 1.0.5-3 install ok installed node-d3-fetch node-d3-fetch 1.2.0-1 install ok installed node-d3-force node-d3-force 1.2.1-2 install ok installed node-d3-format node-d3-format 1:1.4.1-3 install ok installed node-d3-geo node-d3-geo 1.11.9-4 install ok installed node-d3-hierarchy node-d3-hierarchy 1.1.8-3 install ok installed node-d3-interpolate node-d3-interpolate 1.4.0-2 install ok installed node-d3-path node-d3-path 1.0.9-2 install ok installed node-d3-polygon node-d3-polygon 1.0.5-3 install ok installed node-d3-quadtree node-d3-quadtree 1.0.7-2 install ok installed node-d3-queue node-d3-queue 3.0.7-11 install ok installed node-d3-random node-d3-random 1.1.2-3 install ok installed node-d3-scale node-d3-scale 2.2.2-3 install ok installed node-d3-scale-chromatic node-d3-scale-chromatic 1.5.0-2 install ok installed node-d3-selection node-d3-selection 1.4.0-6 install ok installed node-d3-shape node-d3-shape 1.3.7-2 install ok installed node-d3-time node-d3-time 1.0.11-4 install ok installed node-d3-time-format node-d3-time-format 2.1.3-3 install ok installed node-d3-timer node-d3-timer 1.0.10-1 install ok installed node-d3-transition node-d3-transition 1.3.2-3 install ok installed node-d3-voronoi node-d3-voronoi 1.1.4-3 install ok installed node-d3-zoom node-d3-zoom 1.8.3-2 install ok installed node-dagre-d3-renderer node-dagre-d3-renderer 0.6.4+dfsg-3 install ok installed node-dagre-layout node-dagre-layout 0.8.8+really0.8.5+dfsg-4 install ok installed node-debug node-debug 4.3.1+~cs4.1.5-1 install ok installed node-decamelize node-decamelize 4.0.0-1 install ok installed node-defaults node-defaults 1.0.3-2 install ok installed node-diff node-diff 4.0.2~dfsg-2 install ok installed node-end-of-stream node-end-of-stream 1.4.4-1 install ok installed node-escape-string-regexp node-escape-string-regexp 4.0.0-1 install ok installed node-esprima node-esprima 4.0.1+ds+~4.0.2-2 install ok installed node-execa node-execa 4.1.0+dfsg+~cs19.3.6-5 install ok installed node-fill-range node-fill-range 7.0.1-2 install ok installed node-find-up node-find-up 5.0.0-1 install ok installed node-fs.realpath node-fs.realpath 1.0.0-1.1 install ok installed node-get-caller-file node-get-caller-file 1.0.2-1.1 install ok installed node-get-stream node-get-stream 6.0.0-1 install ok installed node-glob node-glob 7.1.6+~7.1.3-1 install ok installed node-glob-parent node-glob-parent 5.1.1+~5.1.0-2 install ok installed node-graceful-fs node-graceful-fs 4.2.4+repack-1 install ok installed node-graphlibrary node-graphlibrary 2.2.0+really2.1.8+dfsg-3 install ok installed node-growl node-growl 1.10.5-2 install ok installed node-has-flag node-has-flag 4.0.0-1 install ok installed node-he node-he 1.2.0-1 install ok installed node-highlight.js node-highlight.js 9.18.5+dfsg1-1 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-3 install ok installed node-iconv-lite node-iconv-lite 0.5.1-3 install ok installed node-inflight node-inflight 1.0.6-1.1 install ok installed node-inherits node-inherits 2.0.4-1 install ok installed node-invert-kv node-invert-kv 3.0.1-1 install ok installed node-is-binary-path node-is-binary-path 2.1.0-1 install ok installed node-is-buffer node-is-buffer 2.0.5-1 install ok installed node-is-extglob node-is-extglob 2.1.1-1 install ok installed node-is-glob node-is-glob 4.0.1-1 install ok installed node-is-number node-is-number 7.0.0-1.1 install ok installed node-is-plain-obj node-is-plain-obj 3.0.0-1 install ok installed node-is-stream node-is-stream 2.0.0-1 install ok installed node-isexe node-isexe 2.0.0-5 install ok installed node-js-yaml node-js-yaml 3.14.1+dfsg+~3.12.6-2 install ok installed node-kind-of node-kind-of 6.0.3+dfsg-1 install ok installed node-lcid node-lcid 3.1.1-1 install ok installed node-locate-path node-locate-path 6.0.0-1 install ok installed node-lodash node-lodash 4.17.21+dfsg+~cs8.31.173-1 install ok installed node-mem node-mem 1.1.0-1.1 install ok installed node-merge-stream node-merge-stream 2.0.0+~1.1.2-1 install ok installed node-mimic-fn node-mimic-fn 3.1.0-1 install ok installed node-minimatch node-minimatch 3.0.4+~3.0.3-1+deb11u2 install ok installed node-ms node-ms 2.1.3+~cs0.7.31-1 install ok installed node-normalize-path node-normalize-path 3.0.0-2 install ok installed node-normalize.css node-normalize.css 8.0.1-3 install ok installed node-npm-run-path node-npm-run-path 2.0.2-2 install ok installed node-object-assign node-object-assign 4.1.1-3 install ok installed node-once node-once 1.4.0-3 install ok installed node-os-locale node-os-locale 5.0.0-1 install ok installed node-p-limit node-p-limit 3.1.0+~cs2.3.0-1 install ok installed node-p-locate node-p-locate 5.0.0-1 install ok installed node-path-dirname node-path-dirname 1.0.2-1.1 install ok installed node-path-exists node-path-exists 4.0.0-2 install ok installed node-path-is-absolute node-path-is-absolute 2.0.0-1 install ok installed node-pump node-pump 3.0.0-4 install ok installed node-randombytes node-randombytes 2.1.0-1 install ok installed node-readdirp node-readdirp 3.5.0-2 install ok installed node-repeat-string node-repeat-string 1.6.1-1 install ok installed node-require-directory node-require-directory 2.1.1-1.1 install ok installed node-require-main-filename node-require-main-filename 2.0.0-1 install ok installed node-rw node-rw 1.3.3-2 install ok installed node-safe-buffer node-safe-buffer 5.2.1+~cs2.1.2-1 install ok installed node-serialize-javascript node-serialize-javascript 5.0.1-2 install ok installed node-set-blocking node-set-blocking 2.0.0-1.1 install ok installed node-set-immediate-shim node-set-immediate-shim 2.0.0-1 install ok installed node-shebang-command node-shebang-command 1.2.0-1.1 install ok installed node-shebang-regex node-shebang-regex 3.0.0-1 install ok installed node-signal-exit node-signal-exit 3.0.3-1 install ok installed node-sprintf-js node-sprintf-js 1.1.2+ds1-2 install ok installed node-string-width node-string-width 4.2.0-1 install ok installed node-strip-ansi node-strip-ansi 6.0.0-2 install ok installed node-strip-json-comments node-strip-json-comments 3.1.1-1 install ok installed node-supports-color node-supports-color 8.1.0+~7.2.0-1 install ok installed node-to-regex-range node-to-regex-range 5.0.1-2 install ok installed node-util node-util 0.10.3-4 install ok installed node-wcwidth.js node-wcwidth.js 1.0.0-1.1 install ok installed node-which node-which 2.0.2+~cs1.3.2-1 install ok installed node-which-module node-which-module 2.0.0-1 install ok installed node-wide-align node-wide-align 1.1.3-1 install ok installed node-wrap-ansi node-wrap-ansi 4.0.0-2 install ok installed node-wrappy node-wrappy 1.0.2-1.1 install ok installed node-y18n node-y18n 4.0.0-4 install ok installed node-yargs node-yargs 15.3.1+repack-2 install ok installed node-yargs-parser node-yargs-parser 18.1.3+~15.0.0-1 install ok installed nodejs nodejs 12.22.12~dfsg-1~deb11u4 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.22+7-1~deb11u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.22+7-1~deb11u1 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed pandoc pandoc 2.9.2.1-1+deb11u1 install ok installed pandoc-citeproc pandoc-citeproc 0.17.0.1-1+b2 install ok installed pandoc-data pandoc-data 2.9.2.1-1+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed pigx-rnaseq pigx-rnaseq 0.0.10+ds-2 install ok installed pigz pigz 2.6-1 install ok installed python-babel-localedata python-babel-localedata 2.8.0+dfsg.1-7 install ok installed python-matplotlib-data python-matplotlib-data 3.3.4-1 install ok installed python3 python3 3.9.2-3 install ok installed python3-alabaster python3-alabaster 0.7.8-1.1 install ok installed python3-appdirs python3-appdirs 1.4.4-1 install ok installed python3-attr python3-attr 20.3.0-1 install ok installed python3-babel python3-babel 2.8.0+dfsg.1-7 install ok installed python3-certifi python3-certifi 2020.6.20-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-click python3-click 7.1.2-1 install ok installed python3-colorama python3-colorama 0.4.4-1 install ok installed python3-coloredlogs python3-coloredlogs 7.3-2 install ok installed python3-colormath python3-colormath 3.0.0-1.1 install ok installed python3-configargparse python3-configargparse 1.2.3-1 install ok installed python3-cutadapt python3-cutadapt 3.2-2 install ok installed python3-cycler python3-cycler 0.10.0-3 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-1+b1 install ok installed python3-decorator python3-decorator 4.4.2-2 install ok installed python3-deeptools python3-deeptools 3.5.0-1 install ok installed python3-deeptoolsintervals python3-deeptoolsintervals 0.1.9-3+b2 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-dnaio python3-dnaio 0.5.0-1 install ok installed python3-docutils python3-docutils 0.16+dfsg-4 install ok installed python3-future python3-future 0.18.2-5 install ok installed python3-git python3-git 3.1.14-1 install ok installed python3-gitdb python3-gitdb 4.0.5-1 install ok installed python3-htseq python3-htseq 0.13.5-1 install ok installed python3-humanfriendly python3-humanfriendly 9.1-1 install ok installed python3-idna python3-idna 2.10-1 install ok installed python3-imagesize python3-imagesize 1.2.0-2 install ok installed python3-importlib-metadata python3-importlib-metadata 1.6.0-2 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-4 install ok installed python3-jinja2 python3-jinja2 2.11.3-1 install ok installed python3-jsonschema python3-jsonschema 3.2.0-3 install ok installed python3-jupyter-core python3-jupyter-core 4.7.1-1+deb11u1 install ok installed python3-kiwisolver python3-kiwisolver 1.3.1-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-lzstring python3-lzstring 1.0.4-1.1 install ok installed python3-markdown python3-markdown 3.3.4-1 install ok installed python3-markupsafe python3-markupsafe 1.1.1-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.3.4-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-more-itertools python3-more-itertools 4.2.0-3 install ok installed python3-nbformat python3-nbformat 5.1.2-1 install ok installed python3-networkx python3-networkx 2.5+ds-2 install ok installed python3-numpy python3-numpy 1:1.19.5-1 install ok installed python3-numpydoc python3-numpydoc 1.1.0-3 install ok installed python3-packaging python3-packaging 20.9-2 install ok installed python3-pil:amd64 python3-pil 8.1.2+dfsg-0.3+deb11u1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-plotly python3-plotly 4.14.3+dfsg-1 install ok installed python3-psutil python3-psutil 5.8.0-1 install ok installed python3-pulp python3-pulp 1.6.0+dfsg1-5 install ok installed python3-py2bit python3-py2bit 0.3.0-6+b1 install ok installed python3-pybigwig python3-pybigwig 0.3.17-1+b4 install ok installed python3-pygments python3-pygments 2.7.1+dfsg-2.1 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.15.5-1+b3 install ok installed python3-pysam python3-pysam 0.15.4+ds-3+b2 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-1 install ok installed python3-requests python3-requests 2.25.1+dfsg-2 install ok installed python3-retrying python3-retrying 1.3.3-4 install ok installed python3-roman python3-roman 2.0.0-5 install ok installed python3-scipy python3-scipy 1.6.0-2 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-simplejson python3-simplejson 3.17.2-1 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-smmap python3-smmap 4.0.0-1 install ok installed python3-snowballstemmer python3-snowballstemmer 2.1.0-1 install ok installed python3-spectra python3-spectra 0.0.11-2 install ok installed python3-sphinx python3-sphinx 3.4.3-2 install ok installed python3-toposort python3-toposort 1.6-1 install ok installed python3-traitlets python3-traitlets 5.0.5-1 install ok installed python3-tz python3-tz 2021.1-1 install ok installed python3-urllib3 python3-urllib3 1.26.5-1~exp1 install ok installed python3-wrapt python3-wrapt 1.12.1-4+b1 install ok installed python3-xopen python3-xopen 1.1.0-1 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3-zipp python3-zipp 1.0.0-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed r-base-core r-base-core 4.0.4-1 install ok installed r-bioc-annotate r-bioc-annotate 1.68.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.52.0-1 install ok installed r-bioc-biobase r-bioc-biobase 2.50.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.36.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.24.1-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.58.0-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.16.1+dfsg-1 install ok installed r-bioc-deseq2 r-bioc-deseq2 1.30.1+dfsg-1 install ok installed r-bioc-genefilter r-bioc-genefilter 1.72.1-1 install ok installed r-bioc-geneplotter r-bioc-geneplotter 1.68.0-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.26.2-2 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.4-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.26.0-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.42.0+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.24.1-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.2.1-4 install ok installed r-bioc-rhtslib r-bioc-rhtslib 1.22.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.6.0-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.50.0-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.28.1-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.20.0+dfsg-1 install ok installed r-bioc-tximport r-bioc-tximport 1.18.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.30.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.36.0+dfsg-1 install ok installed r-cran-askpass r-cran-askpass 1.1-2 install ok installed r-cran-assertthat r-cran-assertthat 0.2.1-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-bh r-cran-bh 1.74.0-1 install ok installed r-cran-bit r-cran-bit 4.0.4+dfsg-1 install ok installed r-cran-bit64 r-cran-bit64 4.0.5-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-5 install ok installed r-cran-blob r-cran-blob 1.2.1-2 install ok installed r-cran-brio r-cran-brio 1.1.1-1 install ok installed r-cran-cachem r-cran-cachem 1.0.3-1 install ok installed r-cran-callr r-cran-callr 3.5.1-1 install ok installed r-cran-cli r-cran-cli 2.3.0-1 install ok installed r-cran-colorspace r-cran-colorspace 2.0-0+dfsg-1 install ok installed r-cran-colourpicker r-cran-colourpicker 1.1.0+dfsg-1 install ok installed r-cran-commonmark r-cran-commonmark 1.7-2 install ok installed r-cran-corrplot r-cran-corrplot 0.84-3 install ok installed r-cran-cpp11 r-cran-cpp11 0.2.6-1 install ok installed r-cran-crayon r-cran-crayon 1.4.0-1 install ok installed r-cran-crosstalk r-cran-crosstalk 1.1.1+dfsg-2 install ok installed r-cran-curl r-cran-curl 4.3+dfsg-1+b1 install ok installed r-cran-data.table r-cran-data.table 1.13.6+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.1.1-1 install ok installed r-cran-desc r-cran-desc 1.2.0-3 install ok installed r-cran-diffobj r-cran-diffobj 0.3.2-1 install ok installed r-cran-digest r-cran-digest 0.6.27-1 install ok installed r-cran-dplyr r-cran-dplyr 1.0.4-1 install ok installed r-cran-dt r-cran-dt 0.17+dfsg-3 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.1-1 install ok installed r-cran-evaluate r-cran-evaluate 0.14-2 install ok installed r-cran-fansi r-cran-fansi 0.4.2-1 install ok installed r-cran-farver r-cran-farver 2.0.3-1+b1 install ok installed r-cran-fastmap r-cran-fastmap 1.1.0-1 install ok installed r-cran-formatr r-cran-formatr 1.7-2 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-generics r-cran-generics 0.1.0-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.3.3+dfsg-1 install ok installed r-cran-ggrepel r-cran-ggrepel 0.9.1-1 install ok installed r-cran-glue r-cran-glue 1.4.2-1 install ok installed r-cran-gprofiler r-cran-gprofiler 0.7.0-2 install ok installed r-cran-gtable r-cran-gtable 0.3.0+dfsg-2 install ok installed r-cran-highr r-cran-highr 0.8+dfsg-2 install ok installed r-cran-htmltools r-cran-htmltools 0.5.1.1-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.5.3+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.5.5+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.2-1 install ok installed r-cran-isoband r-cran-isoband 0.2.3-2 install ok installed r-cran-jsonlite r-cran-jsonlite 1.7.2+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.31+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-later r-cran-later 1.1.0.1+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.20-41-1+b1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.2-1+b1 install ok installed r-cran-lifecycle r-cran-lifecycle 0.2.0-2 install ok installed r-cran-littler r-cran-littler 0.3.12-1 install ok installed r-cran-locfit r-cran-locfit 1.5-9.4-2+b1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.1-1 install ok installed r-cran-markdown r-cran-markdown 1.1+dfsg-1+b1 install ok installed r-cran-mass r-cran-mass 7.3-53.1-1 install ok installed r-cran-matrix r-cran-matrix 1.3-2-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.58.0-3 install ok installed r-cran-memoise r-cran-memoise 2.0.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.8-34-1 install ok installed r-cran-mime r-cran-mime 0.9-1+b1 install ok installed r-cran-miniui r-cran-miniui 0.1.1.1-3 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.152-1 install ok installed r-cran-openssl r-cran-openssl 1.4.3+dfsg-2 install ok installed r-cran-pheatmap r-cran-pheatmap 1.0.12-2 install ok installed r-cran-pillar r-cran-pillar 1.4.7-1 install ok installed r-cran-pkgbuild r-cran-pkgbuild 1.2.0-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.1-1 install ok installed r-cran-pkgload r-cran-pkgload 1.1.0-1 install ok installed r-cran-plogr r-cran-plogr 0.2.0-3 install ok installed r-cran-plotly r-cran-plotly 4.9.3+dfsg-2 install ok installed r-cran-plyr r-cran-plyr 1.8.6-2 install ok installed r-cran-praise r-cran-praise 1.0.0-4 install ok installed r-cran-prettyunits r-cran-prettyunits 1.1.1-2 install ok installed r-cran-processx r-cran-processx 3.4.5-1 install ok installed r-cran-promises r-cran-promises 1.1.1+dfsg-1 install ok installed r-cran-ps r-cran-ps 1.5.0-1 install ok installed r-cran-purrr r-cran-purrr 0.3.4-1+b1 install ok installed r-cran-r6 r-cran-r6 2.5.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-3 install ok installed r-cran-rcpp r-cran-rcpp 1.0.6-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 0.10.2.1.0-1 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.2-1+b1 install ok installed r-cran-rematch2 r-cran-rematch2 2.1.2-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rjson r-cran-rjson 0.2.20-2 install ok installed r-cran-rlang r-cran-rlang 0.4.10-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.6+dfsg-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.2-1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.2.3-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.13-1 install ok installed r-cran-scales r-cran-scales 1.1.1-1 install ok installed r-cran-shiny r-cran-shiny 1.5.0+dfsg-2 install ok installed r-cran-shinyjs r-cran-shinyjs 2.0.0-1 install ok installed r-cran-snow r-cran-snow 1:0.4.3-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-3 install ok installed r-cran-stringi r-cran-stringi 1.5.3-1 install ok installed r-cran-stringr r-cran-stringr 1.4.0-2 install ok installed r-cran-survival r-cran-survival 3.2-7-1 install ok installed r-cran-sys r-cran-sys 3.4-1 install ok installed r-cran-testthat r-cran-testthat 3.0.1-1 install ok installed r-cran-tibble r-cran-tibble 3.0.6+dfsg-1 install ok installed r-cran-tidyr r-cran-tidyr 1.1.2-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.1.0+dfsg-1 install ok installed r-cran-tinytex r-cran-tinytex 0.29-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-2 install ok installed r-cran-vctrs r-cran-vctrs 0.3.6-1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-4 install ok installed r-cran-waldo r-cran-waldo 0.2.3-2 install ok installed r-cran-withr r-cran-withr 2.4.1-1 install ok installed r-cran-xfun r-cran-xfun 0.20-1 install ok installed r-cran-xml r-cran-xml 3.99-0.5-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed r-cran-yaml r-cran-yaml 2.2.1-1+b1 install ok installed readline-common readline-common 8.1-1 install ok installed rna-star rna-star 2.7.8a+dfsg-2 install ok installed salmon salmon 1.4.0+ds1-1+b4 install ok installed samtools samtools 1.11-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sgml-base sgml-base 1.30 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed snakemake snakemake 5.24.1-2 install ok installed sphinx-common sphinx-common 3.4.3-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.5.1+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed trim-galore trim-galore 0.6.6-1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed x11-common x11-common 1:7.7+22 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-2+deb11u2 3m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'remove', 'ant', 'ant-optional', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cutadapt', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'java-common', 'libactivation-java', 'libaec0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfastinfoset-java', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjsoup-java', 'libjsr305-java', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblsan0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libuv1:amd64', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'multiqc', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'perl', 'perl-modules-5.32', 'pigz', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-future', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-requests', 'python3-retrying', 'python3-roman', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-toposort', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-brio', 'r-cran-cachem', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-corrplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gprofiler', 'r-cran-gtable', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-locfit', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-promises', 'r-cran-ps', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rna-star', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'pigx-rnaseq'] 3m42.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ant ant-optional ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cutadapt default-jre default-jre-headless docutils-common fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax git git-man java-common libactivation-java libaec0 libaopalliance-java libapache-pom-java libargs4j-java libasan6 libasound2 libasound2-data libatinject-jsr330-api-java libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libbibutils7 libbigwig0 libblas3 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-ares2 libc-dev-bin libc6-dev libcairo2 libcdi-api-java libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcrypt-dev libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 liberror-perl libexpat1 libfastinfoset-java libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran5 libghc-pandoc-citeproc-data libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhdf5-103-1 libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libice6 libicu67 libimagequant0 libistack-commons-java libitm1 libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-d3-format libjs-es5-shim libjs-highlight.js libjs-inherits libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-sprintf-js libjs-twitter-bootstrap-datepicker libjs-underscore libjs-util libjsoup-java libjsr305-java liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libllvm11 liblsan0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnode72 libnotify-bin libnotify4 libnsl-dev libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libpsl5 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsis-base-java libsis-base-jni libsis-jhdf5-java libsis-jhdf5-jni libsisu-inject-java libsisu-plexus-java libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1 libstaden-read14 libstax-ex-java libstdc++-10-dev libstreambuffer-java libsz2 libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libtxw2-java libubsan1 libuv1 libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 linux-libc-dev littler mailcap media-types mime-support mocha multiqc node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-highlight.js node-html5shiv node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-normalize.css node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openjdk-11-jre openjdk-11-jre-headless openssl pandoc pandoc-citeproc pandoc-data perl perl-modules-5.32 pigx-rnaseq pigz python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-appdirs python3-attr python3-babel python3-certifi python3-chardet python3-click python3-colorama python3-coloredlogs python3-colormath python3-configargparse python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-distutils python3-dnaio python3-docutils python3-future python3-git python3-gitdb python3-htseq python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nbformat python3-networkx python3-numpy python3-numpydoc python3-packaging python3-pil python3-pkg-resources python3-plotly python3-psutil python3-pulp python3-py2bit python3-pybigwig python3-pygments python3-pyparsing python3-pyrsistent python3-pysam python3-ratelimiter python3-requests python3-retrying python3-roman python3-scipy python3-setuptools python3-simplejson python3-six python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-toposort python3-traitlets python3-tz python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-zipp python3.9 python3.9-minimal r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-cachem r-cran-callr r-cran-cli r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-corrplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gprofiler r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml readline-common rna-star salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common sphinx-rtd-theme-common trim-galore ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip zlib1g-dev 0 upgraded, 0 newly installed, 684 to remove and 0 not upgraded. After this operation, 1798 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80654 files and directories currently installed.) Removing pigx-rnaseq (0.0.10+ds-2) ... Removing fastqc (0.11.9+dfsg-4) ... Removing libhtsjdk-java (2.23.0+dfsg-2) ... Removing libjaxb-java (2.3.0.1-10) ... Removing libtxw2-java (2.3.0.1-10) ... Removing default-jre (2:1.11-72) ... Removing openjdk-11-jre:amd64 (11.0.22+7-1~deb11u1) ... Removing default-jre-headless (2:1.11-72) ... Removing snakemake (5.24.1-2) ... Removing python3-pulp (1.6.0+dfsg1-5) ... Removing coinor-cbc (2.10.5+ds1-3) ... Removing coinor-libcbc3:amd64 (2.10.5+ds1-3) ... Removing coinor-libcgl1 (0.60.3+repack1-2) ... Removing coinor-libclp1 (1.17.5+repack1-1) ... Removing coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Removing coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Removing trim-galore (0.6.6-1) ... Removing cutadapt (3.2-2) ... Removing python3-deeptools (3.5.0-1) ... Removing python3-numpydoc (1.1.0-3) ... Removing python3-sphinx (3.4.3-2) ... Removing python3-docutils (0.16+dfsg-4) ... Removing docutils-common (0.16+dfsg-4) ... Removing r-bioc-deseq2 (1.30.1+dfsg-1) ... Removing r-bioc-genefilter (1.72.1-1) ... Removing r-cran-survival (3.2-7-1) ... Removing r-bioc-rtracklayer (1.50.0-1) ... Removing r-bioc-genomicalignments (1.26.0-1) ... Removing r-bioc-rsamtools (2.6.0-1) ... Removing r-bioc-biocparallel (1.24.1-1) ... Removing r-cran-snow (1:0.4.3-2) ... Removing r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Removing r-bioc-geneplotter (1.68.0-1) ... Removing fonts-dejavu-core (2.37-2) ... Removing salmon (1.4.0+ds1-1+b4) ... Removing sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Removing r-cran-plotly (4.9.3+dfsg-2) ... Removing r-cran-colourpicker (1.1.0+dfsg-1) ... Removing r-cran-shinyjs (2.0.0-1) ... Removing r-cran-rmarkdown (2.6+dfsg-1) ... Removing r-cran-dt (0.17+dfsg-3) ... Removing r-cran-crosstalk (1.1.1+dfsg-2) ... Removing fonts-lato (2.0-2.1) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing multiqc (1.9+dfsg-3) ... Removing python3-matplotlib (3.3.4-1) ... Removing python-matplotlib-data (3.3.4-1) ... Removing fonts-lyx (2.3.6-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing r-cran-knitr (1.31+dfsg-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed Removing python3-git (3.1.14-1) ... Removing git (1:2.30.2-1+deb11u2) ... Removing git-man (1:2.30.2-1+deb11u2) ... Removing libfastinfoset-java (1.2.12-3) ... Removing libstreambuffer-java (1.5.4-1.1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libsis-jhdf5-java (19.04.0+dfsg-4) ... Removing libsis-jhdf5-jni (19.04.0+dfsg-4) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing libcommons-jexl2-java (2.1.1-5) ... Removing pandoc-citeproc (0.17.0.1-1+b2) ... Removing libbibutils7 (6.10-2) ... Removing python3-pybigwig (0.3.17-1+b4) ... Removing libbigwig0:amd64 (0.4.4+dfsg-2) ... Removing python3-scipy (1.6.0-2) ... Removing r-cran-rcpparmadillo (0.10.2.1.0-1) ... Removing python3-spectra (0.0.11-2) ... Removing python3-colormath (3.0.0-1.1) ... Removing libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Removing libboost-iostreams1.74.0:amd64 (1.74.0-9) ... Removing libboost-program-options1.74.0:amd64 (1.74.0-9) ... Removing node-dagre-d3-renderer (0.6.4+dfsg-3) ... Removing node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Removing node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Removing mocha (8.2.1+ds1+~cs29.4.27-3) ... Removing node-yargs (15.3.1+repack-2) ... Removing node-yargs-parser (18.1.3+~15.0.0-1) ... Removing node-y18n (4.0.0-4) ... Removing python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Removing libgl1:amd64 (1.3.2-1) ... Removing libglx0:amd64 (1.3.2-1) ... Removing libglx-mesa0:amd64 (20.3.5-1) ... Removing r-bioc-genomicranges (1.42.0+dfsg-1) ... Removing r-bioc-biostrings (2.58.0-1) ... Removing r-bioc-xvector (0.30.0-1) ... Removing r-bioc-rhtslib (1.22.0+dfsg-1) ... Removing r-bioc-zlibbioc (1.36.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Removing pandoc (2.9.2.1-1+deb11u1) ... Removing libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Removing libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Removing libcommons-math3-java (3.6.1-3) ... Removing libstaden-read14:amd64 (1.14.13-4) ... Removing samtools (1.11-1) ... Removing r-cran-gprofiler (0.7.0-2) ... Removing r-bioc-genomeinfodb (1.26.2-2) ... Removing r-cran-rcurl (1.98-1.2-1+b1) ... Removing r-bioc-annotate (1.68.0+dfsg-1) ... Removing r-cran-httr (1.4.2-1) ... Removing r-cran-curl (4.3+dfsg-1+b1) ... Removing python3-datrie:amd64 (0.8.2-1+b1) ... Removing node-growl (1.10.5-2) ... Removing libnotify-bin (0.7.9-3) ... Removing libnotify4:amd64 (0.7.9-3) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Removing libgl1-mesa-dri:amd64 (20.3.5-1) ... Removing libdrm-amdgpu1:amd64 (2.4.104-1) ... Removing libdrm-intel1:amd64 (2.4.104-1) ... Removing libdrm-radeon1:amd64 (2.4.104-1) ... Removing libdrm-nouveau2:amd64 (2.4.104-1) ... Removing libdtd-parser-java (1.2-1) ... Removing libllvm11:amd64 (1:11.0.1-2) ... Removing libedit2:amd64 (3.1-20191231-2+b1) ... Removing libelf1:amd64 (0.183-1) ... Removing liberror-perl (0.17029-1) ... Removing python3-simplejson (3.17.2-1) ... Removing python3-plotly (4.14.3+dfsg-1) ... Removing python3-nbformat (5.1.2-1) ... Removing python3-jsonschema (3.2.0-3) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-jupyter-core (4.7.1-1+deb11u1) ... Removing python3-distutils (3.9.2-1) ... Removing python3-yaml (5.3.1-5) ... Removing python3-traitlets (5.0.5-1) ... Removing python3-deeptoolsintervals (0.1.9-3+b2) ... Removing libpython3.9:amd64 (3.9.2-1) ... Removing libfindbin-libs-perl (2.190.02-1) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Removing r-cran-ggrepel (0.9.1-1) ... Removing r-cran-ggplot2 (3.3.3+dfsg-1) ... Removing r-cran-mgcv (1.8-34-1) ... Removing libghc-pandoc-citeproc-data (0.17.0.1-1) ... Removing libgif7:amd64 (5.1.9-2) ... Removing libglapi-mesa:amd64 (20.3.5-1) ... Removing shared-mime-info (2.0-1) ... Removing libglvnd0:amd64 (1.3.2-1) ... Removing r-cran-data.table (1.13.6+dfsg-1) ... Removing libhtscodecs2:amd64 (0.5-3) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-stringr (1.4.0-2) ... Removing r-cran-stringi (1.5.3-1) ... Removing r-cran-xml (3.99-0.5-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libjbzip2-java (0.9.1-5) ... Removing libjemalloc2:amd64 (5.2.1-3) ... Removing node-d3 (5.16.0-4) ... Removing node-d3-scale (2.2.2-3) ... Removing node-d3-format (1:1.4.1-3) ... Removing libjs-d3-format (1:1.4.1-3) ... Removing r-cran-highr (0.8+dfsg-2) ... Removing node-assert (1.5.0-1) ... Removing node-util (0.10.3-4) ... Removing libjs-util (0.10.3-4) ... Removing node-glob (7.1.6+~7.1.3-1) ... Removing sphinx-common (3.4.3-2) ... Removing libjs-sphinxdoc (3.4.3-2) ... Removing libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Removing libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Removing libjs-jquery-metadata (12-3) ... Removing libjs-modernizr (2.6.2+ds1-4) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Removing node-argparse (2.0.1-1) ... Removing node-sprintf-js (1.1.2+ds1-2) ... Removing libjs-sprintf-js (1.1.2+ds1-2) ... Removing libjs-underscore (1.9.1~dfsg-3) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libngs-java:amd64 (2.10.9-1) ... Removing libngs-sdk-dev:amd64 (2.10.9-1) ... Removing libngs-sdk2:amd64 (2.10.9-1) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libxsom-java (2.3.0.1-10) ... Removing librngom-java (2.3.0.1-10) ... Removing librelaxng-datatype-java (1.0+ds1-3.1) ... Removing libsensors5:amd64 (1:3.6.0-7) ... Removing libsensors-config (1:3.6.0-7) ... Removing libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Removing libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Removing libtbb2:amd64 (2020.3-1) ... Removing libvulkan1:amd64 (1.2.162.0-1) ... Removing libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb-dri2-0:amd64 (1.14-3) ... Removing libxcb-dri3-0:amd64 (1.14-3) ... Removing libxcb-glx0:amd64 (1.14-3) ... Removing libxcb-present0:amd64 (1.14-3) ... Removing libxcb-sync1:amd64 (1.14-3) ... Removing libxcb-xfixes0:amd64 (1.14-3) ... Removing libxdamage1:amd64 (1:1.1.5-2) ... Removing libxfixes3:amd64 (1:5.0.3-2) ... Removing libxi6:amd64 (2:1.7.10-1) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing libz3-4:amd64 (4.8.10-1) ... Removing littler (0.3.12-1) ... Removing node-ansi-colors (4.1.1-2) ... Removing node-cliui (4.1.0-2) ... Removing node-wrap-ansi (4.0.0-2) ... Removing node-wide-align (1.1.3-1) ... Removing node-string-width (4.2.0-1) ... Removing node-strip-ansi (6.0.0-2) ... Removing node-ansi-regex (5.0.1-1~deb11u1) ... Removing node-chalk (4.1.0-1) ... Removing node-ansi-styles (4.2.1-1) ... Removing node-chokidar (3.4.3-3) ... Removing node-readdirp (3.5.0-2) ... Removing node-anymatch (3.1.1+~2.2.2-1) ... Removing node-async-each (1.0.3-1) ... Removing node-minimatch (3.0.4+~3.0.3-1+deb11u2) ... Removing node-brace-expansion (2.0.0-1) ... Removing node-balanced-match (1.0.0-1) ... Removing node-is-binary-path (2.1.0-1) ... Removing node-binary-extensions (2.2.0-1) ... Removing node-braces (3.0.2+~3.0.0-1) ... Removing node-browser-stdout (1.3.1-2) ... Removing node-camelcase (6.2.0-2) ... Removing node-wcwidth.js (1.0.0-1.1) ... Removing node-defaults (1.0.3-2) ... Removing node-clone (2.1.2-2) ... Removing node-color-convert (1.9.3-1) ... Removing node-color-name (1.1.4+~1.1.1-1) ... Removing node-d3-fetch (1.2.0-1) ... Removing node-d3-dsv (1.1.1-5) ... Removing node-commander (6.2.1-2) ... Removing node-d3-geo (1.11.9-4) ... Removing node-d3-axis (1.0.12-3) ... Removing node-d3-brush (1.1.5-2) ... Removing node-d3-chord (1.0.6-3) ... Removing node-d3-force (1.2.1-2) ... Removing node-d3-collection (1.0.7-3) ... Removing node-d3-zoom (1.8.3-2) ... Removing node-d3-transition (1.3.2-3) ... Removing node-d3-scale-chromatic (1.5.0-2) ... Removing node-d3-contour (1.3.2-4) ... Removing node-d3-drag (1.2.5-2) ... Removing node-d3-dispatch (1.0.6-2) ... Removing node-d3-ease (1.0.5-3) ... Removing node-d3-hierarchy (1.1.8-3) ... Removing node-d3-shape (1.3.7-2) ... Removing node-d3-path (1.0.9-2) ... Removing node-d3-polygon (1.0.5-3) ... Removing node-d3-quadtree (1.0.7-2) ... Removing node-rw (1.3.3-2) ... Removing node-d3-queue (3.0.7-11) ... Removing node-d3-random (1.1.2-3) ... Removing node-d3-selection (1.4.0-6) ... Removing node-d3-time-format (2.1.3-3) ... Removing node-d3-time (1.0.11-4) ... Removing node-d3-timer (1.0.10-1) ... Removing node-d3-voronoi (1.1.4-3) ... Removing node-debug (4.3.1+~cs4.1.5-1) ... Removing node-decamelize (4.0.0-1) ... Removing node-diff (4.0.2~dfsg-2) ... Removing node-os-locale (5.0.0-1) ... Removing node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Removing node-get-stream (6.0.0-1) ... Removing node-pump (3.0.0-4) ... Removing node-end-of-stream (1.4.4-1) ... Removing node-escape-string-regexp (4.0.0-1) ... Removing node-esprima (4.0.1+ds+~4.0.2-2) ... Removing node-fill-range (7.0.1-2) ... Removing node-find-up (5.0.0-1) ... Removing node-fs.realpath (1.0.0-1.1) ... Removing node-get-caller-file (1.0.2-1.1) ... Removing node-glob-parent (5.1.1+~5.1.0-2) ... Removing node-graceful-fs (4.2.4+repack-1) ... Removing node-supports-color (8.1.0+~7.2.0-1) ... Removing node-has-flag (4.0.0-1) ... Removing node-he (1.2.0-1) ... Removing node-highlight.js (9.18.5+dfsg1-1) ... Removing node-iconv-lite (0.5.1-3) ... Removing node-inflight (1.0.6-1.1) ... Removing node-lcid (3.1.1-1) ... Removing node-invert-kv (3.0.1-1) ... Removing node-to-regex-range (5.0.1-2) ... Removing node-is-number (7.0.0-1.1) ... Removing node-kind-of (6.0.3+dfsg-1) ... Removing node-is-buffer (2.0.5-1) ... Removing node-is-glob (4.0.1-1) ... Removing node-is-extglob (2.1.1-1) ... Removing node-is-plain-obj (3.0.0-1) ... Removing node-is-stream (2.0.0-1) ... Removing node-which (2.0.2+~cs1.3.2-1) ... Removing node-isexe (2.0.0-5) ... Removing node-locate-path (6.0.0-1) ... Removing node-lodash (4.17.21+dfsg+~cs8.31.173-1) ... Removing node-mem (1.1.0-1.1) ... Removing node-merge-stream (2.0.0+~1.1.2-1) ... Removing node-mimic-fn (3.1.0-1) ... Removing node-ms (2.1.3+~cs0.7.31-1) ... Removing node-normalize-path (3.0.0-2) ... Removing node-npm-run-path (2.0.2-2) ... Removing node-object-assign (4.1.1-3) ... Removing node-once (1.4.0-3) ... Removing node-p-locate (5.0.0-1) ... Removing node-p-limit (3.1.0+~cs2.3.0-1) ... Removing node-path-dirname (1.0.2-1.1) ... Removing node-path-exists (4.0.0-2) ... Removing node-path-is-absolute (2.0.0-1) ... Removing node-serialize-javascript (5.0.1-2) ... Removing node-randombytes (2.1.0-1) ... Removing node-repeat-string (1.6.1-1) ... Removing node-require-directory (2.1.1-1.1) ... Removing node-require-main-filename (2.0.0-1) ... Removing node-safe-buffer (5.2.1+~cs2.1.2-1) ... Removing node-set-blocking (2.0.0-1.1) ... Removing node-set-immediate-shim (2.0.0-1) ... Removing node-shebang-command (1.2.0-1.1) ... Removing node-shebang-regex (3.0.0-1) ... Removing node-signal-exit (3.0.3-1) ... Removing node-strip-json-comments (3.1.1-1) ... Removing node-which-module (2.0.0-1) ... Removing node-wrappy (1.0.2-1.1) ... Removing pandoc-data (2.9.2.1-1+deb11u1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-cutadapt (3.2-2) ... Removing python3-dnaio (0.5.0-1) ... Removing python3-xopen (1.1.0-1) ... Removing pigz (2.6-1) ... Removing python3-babel (2.8.0+dfsg.1-7) ... Removing python-babel-localedata (2.8.0+dfsg.1-7) ... Removing python3-alabaster (0.7.8-1.1) ... Removing python3-appdirs (1.4.4-1) ... Removing python3-attr (20.3.0-1) ... Removing python3-requests (2.25.1+dfsg-2) ... Removing python3-certifi (2020.6.20-1) ... Removing python3-chardet (4.0.0-1) ... Removing python3-click (7.1.2-1) ... Removing python3-colorama (0.4.4-1) ... Removing python3-coloredlogs (7.3-2) ... Removing python3-configargparse (1.2.3-1) ... Removing python3-cycler (0.10.0-3) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-networkx (2.5+ds-2) ... Removing python3-decorator (4.4.2-2) ... Removing python3-lzstring (1.0.4-1.1) ... Removing python3-future (0.18.2-5) ... Removing python3-gitdb (4.0.5-1) ... Removing python3-htseq (0.13.5-1) ... Removing python3-humanfriendly (9.1-1) ... Removing python3-idna (2.10-1) ... Removing python3-imagesize (1.2.0-2) ... Removing python3-importlib-metadata (1.6.0-2) ... Removing python3-ipython-genutils (0.2.0-4) ... Removing python3-jinja2 (2.11.3-1) ... Removing python3-kiwisolver (1.3.1-1+b1) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-markdown (3.3.4-1) ... Removing python3-markupsafe (1.1.1-1+b3) ... Removing python3-zipp (1.0.0-3) ... Removing python3-more-itertools (4.2.0-3) ... Removing python3-packaging (20.9-2) ... Removing python3-pygments (2.7.1+dfsg-2.1) ... Removing python3-psutil (5.8.0-1) ... Removing python3-py2bit (0.3.0-6+b1) ... Removing python3-pyparsing (2.4.7-1) ... Removing python3-pyrsistent:amd64 (0.15.5-1+b3) ... Removing python3-pysam (0.15.4+ds-3+b2) ... Removing python3-ratelimiter (1.2.0.post0-1) ... Removing python3-retrying (1.3.3-4) ... Removing python3-roman (2.0.0-5) ... Removing python3-wrapt (1.12.1-4+b1) ... Removing python3-urllib3 (1.26.5-1~exp1) ... Removing python3-six (1.16.0-2) ... Removing python3-smmap (4.0.0-1) ... Removing python3-snowballstemmer (2.1.0-1) ... Removing python3-toposort (1.6-1) ... Removing python3-tz (2021.1-1) ... Removing r-bioc-delayedarray (0.16.1+dfsg-1) ... Removing r-bioc-tximport (1.18.0+dfsg-1) ... Removing r-bioc-matrixgenerics (1.2.1-4) ... Removing r-bioc-genomeinfodbdata (1.2.4-1) ... Removing r-cran-openssl (1.4.3+dfsg-2) ... Removing r-cran-askpass (1.1-2) ... Removing r-cran-isoband (0.2.3-2) ... Removing r-cran-testthat (3.0.1-1) ... Removing r-cran-pkgload (1.1.0-1) ... Removing r-cran-waldo (0.2.3-2) ... Removing r-cran-htmlwidgets (1.5.3+dfsg-1) ... Removing r-cran-miniui (0.1.1.1-3) ... Removing r-cran-bitops (1.0-6-5) ... Removing r-cran-brio (1.1.1-1) ... Removing r-cran-pkgbuild (1.2.0-1) ... Removing r-cran-callr (3.5.1-1) ... Removing r-cran-pheatmap (1.0.12-2) ... Removing r-cran-scales (1.1.1-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.0-0+dfsg-1) ... Removing r-cran-corrplot (0.84-3) ... Removing r-cran-tidyr (1.1.2-1) ... Removing r-cran-cpp11 (0.2.6-1) ... Removing r-cran-rematch2 (2.1.2-2) ... Removing r-cran-dplyr (1.0.4-1) ... Removing r-cran-tibble (3.0.6+dfsg-1) ... Removing r-cran-pillar (1.4.7-1) ... Removing r-cran-diffobj (0.3.2-1) ... Removing r-cran-tidyselect (1.1.0+dfsg-1) ... Removing r-cran-evaluate (0.14-2) ... Removing r-cran-fansi (0.4.2-1) ... Removing r-cran-farver (2.0.3-1+b1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.7-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-generics (0.1.0-1) ... Removing r-cran-lifecycle (0.2.0-2) ... Removing r-cran-gtable (0.3.0+dfsg-2) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-locfit (1.5-9.4-2+b1) ... Removing r-cran-nlme (3.1.152-1) ... Removing r-cran-lazyeval (0.2.2-1+b1) ... Removing r-cran-rjson (0.2.20-2) ... Removing r-cran-purrr (0.3.4-1+b1) ... Removing r-cran-markdown (1.1+dfsg-1+b1) ... Removing r-cran-mass (7.3-53.1-1) ... Removing r-cran-matrixstats (0.58.0-3) ... Removing r-cran-plyr (1.8.6-2) ... Removing r-cran-praise (1.0.0-4) ... Removing r-cran-prettyunits (1.1.1-2) ... Removing r-cran-processx (3.4.5-1) ... Removing r-cran-ps (1.5.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-3) ... Removing r-cran-rstudioapi (0.13-1) ... Removing r-cran-sys (3.4-1) ... Removing r-cran-tinytex (0.29-1) ... Removing r-cran-utf8 (1.1.4-2) ... Removing r-cran-viridislite (0.3.0-4) ... Removing r-cran-xfun (0.20-1) ... Removing r-cran-yaml (2.2.1-1+b1) ... Removing rna-star (2.7.8a+dfsg-2) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.30) ... Removing r-cran-matrix (1.3-2-1) ... Removing r-bioc-annotationdbi (1.52.0-1) ... Removing r-cran-rsqlite (2.2.3-1) ... Removing r-cran-shiny (1.5.0+dfsg-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-httpuv (1.5.5+dfsg-1) ... Removing r-cran-promises (1.1.1+dfsg-1) ... Removing r-cran-later (1.1.0.1+dfsg-1) ... Removing r-cran-bh (1.74.0-1) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-9) ... Removing libstdc++-10-dev:amd64 (10.2.1-6) ... Removing libgcc-10-dev:amd64 (10.2.1-6) ... Removing libasan6:amd64 (10.2.1-6) ... Removing libatomic1:amd64 (10.2.1-6) ... Removing python3-numpy (1:1.19.5-1) ... Removing libc6-dev:amd64 (2.31-13+deb11u8) ... Removing libc-dev-bin (2.31-13+deb11u8) ... Removing libcrypt-dev:amd64 (1:4.4.18-4) ... Removing libhts3:amd64 (1.11-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Removing libdrm2:amd64 (2.4.104-1) ... Removing libdrm-common (2.4.104-1) ... Removing libitm1:amd64 (10.2.1-6) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.5.15-1) ... Removing libjs-highlight.js (9.18.5+dfsg1-1) ... Removing node-inherits (2.0.4-1) ... Removing libjs-inherits (2.0.4-1) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.10.21+dfsg-2+deb11u1) ... Removing libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Removing libjs-json (0~20190826+~1.0.5-2) ... Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ... Removing libjs-sifter.js (0.6.0+dfsg-1) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing liblsan0:amd64 (10.2.1-6) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Removing libtsan0:amd64 (10.2.1-6) ... Removing libubsan1:amd64 (10.2.1-6) ... Removing linux-libc-dev:amd64 (5.10.209-2) ... Removing node-d3-array (1.2.4-3) ... Removing node-d3-interpolate (1.4.0-2) ... Removing node-d3-color (1.2.8-2) ... Removing node-html5shiv (3.7.3+dfsg-3) ... Removing node-normalize.css (8.0.1-3) ... Removing python3-pkg-resources (52.0.0-4) ... Removing r-bioc-biobase (2.50.0-1) ... Removing r-bioc-iranges (2.24.1-1) ... Removing r-bioc-s4vectors (0.28.1-1) ... Removing r-bioc-biocgenerics (0.36.0-1) ... Removing r-cran-desc (1.2.0-3) ... Removing r-cran-cli (2.3.0-1) ... Removing r-cran-assertthat (0.2.1-2) ... Removing r-cran-htmltools (0.5.1.1-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-bit64 (4.0.5-1) ... Removing r-cran-bit (4.0.4+dfsg-1) ... Removing r-cran-blob (1.2.1-2) ... Removing r-cran-memoise (2.0.0-1) ... Removing r-cran-cachem (1.0.3-1) ... Removing r-cran-commonmark (1.7-2) ... Removing r-cran-crayon (1.4.0-1) ... Removing r-cran-dbi (1.1.1-1) ... Removing r-cran-vctrs (0.3.6-1) ... Removing r-cran-digest (0.6.27-1) ... Removing r-cran-ellipsis (0.3.1-1) ... Removing r-cran-fastmap (1.1.0-1) ... Removing r-cran-glue (1.4.2-1) ... Removing r-cran-jsonlite (1.7.2+dfsg-1) ... Removing r-cran-lattice (0.20-41-1+b1) ... Removing r-cran-magrittr (2.0.1-1) ... Removing r-cran-mime (0.9-1+b1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-plogr (0.2.0-3) ... Removing r-cran-r6 (2.5.0-1) ... Removing r-cran-rlang (0.4.10-1) ... Removing r-cran-rprojroot (2.0.2-1) ... Removing r-cran-sourcetools (0.1.7-3) ... Removing r-cran-withr (2.4.1-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing r-cran-rcpp (1.0.6-1) ... Removing libjs-bootstrap (3.4.1+dfsg-2) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing nodejs (12.22.12~dfsg-1~deb11u4) ... Removing libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Removing libc-ares2:amd64 (1.17.1-1+deb11u3) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libuv1:amd64 (1.40.0-2) ... Removing media-types (4.0.0) ... Removing r-cran-littler (0.3.12-1) ... Removing r-cran-pkgkitten (0.2.1-1) ... Removing r-base-core (4.0.4-1) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing libtk8.6:amd64 (8.6.11-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libicu67:amd64 (67.1-7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libtcl8.6:amd64 (8.6.11+dfsg-1) ... Removing libthai-data (0.1.28-3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing readline-common (8.1-1) ... Removing unzip (6.0-26+deb11u1) ... Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libistack-commons-java (3.0.6-5) ... Removing ant-optional (1.10.9-4) ... Removing ant (1.10.9-4) ... Removing ca-certificates-java (20190909+deb11u1) ... Removing openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing java-common (0.72) ... Removing libactivation-java (1.2.0-2) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-3) ... Removing libmaven3-core-java (3.6.3-5) ... Removing libguice-java (4.2.3-2) ... Removing libaopalliance-java (20070526-6) ... Removing libmaven-parent-java (31-2) ... Removing libargs4j-java (2.33-1.1) ... Removing libasound2:amd64 (1.2.4-1.1) ... Removing libasound2-data (1.2.4-1.1) ... Removing libguava-java (29.0-6) ... Removing libsisu-plexus-java (0.3.4-3) ... Removing libsisu-inject-java (0.3.4-2) ... Removing libcdi-api-java (1.2-3) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Removing libcups2:amd64 (2.3.3op2-3+deb11u6) ... Removing libavahi-client3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common3:amd64 (0.8-5+deb11u2) ... Removing libavahi-common-data:amd64 (0.8-5+deb11u2) ... Removing libcommons-cli-java (1.4-2) ... Removing libwagon-http-java (3.3.4-1) ... Removing libhttpclient-java (4.5.13-2) ... Removing libcommons-codec-java (1.15-1) ... Removing libplexus-archiver-java (3.6.0-2) ... Removing libcommons-compress-java (1.20-1) ... Removing libplexus-io-java (3.2.0-1.1) ... Removing libmaven-shared-utils-java (3.3.0-1+deb11u1) ... Removing libcommons-io-java (2.8.0-1) ... Removing libcommons-lang3-java (3.11-1) ... Removing libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Removing libdom4j-java (2.1.3-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libgeronimo-annotation-1.3-spec-java (1.3-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libhttpcore-java (4.4.14-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libjsoup-java (1.10.2-2) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libmaven-resolver-java (1.4.2-3) ... Removing libnss3:amd64 (2:3.61-1+deb11u3) ... Removing libnspr4:amd64 (2:4.29-1) ... Removing libpcsclite1:amd64 (1.9.1-1) ... Removing libplexus-sec-dispatcher-java (1.4-4) ... Removing libplexus-cipher-java (1.8-2) ... Removing libplexus-classworlds-java (2.6.0-1) ... Removing libplexus-component-annotations-java (2.1.0-1) ... Removing libplexus-interpolation-java (1.26-1) ... Removing libwagon-provider-api-java (3.3.4-1) ... Removing libplexus-utils2-java (3.3.0-1) ... Removing libslf4j-java (1.7.30-1) ... Removing libsnappy-java (1.1.8.3-1) ... Removing libsnappy-jni (1.1.8.3-1) ... Removing libsnappy1v5:amd64 (1.1.8-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libxz-java (1.8-2) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ttf-bitstream-vera (1.10-8.1) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Removing libcommons-logging-java (1.2-2) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (18-1) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libpng16-16:amd64 (1.6.37-3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'remove', 'ant', 'ant-optional', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cutadapt', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'java-common', 'libactivation-java', 'libaec0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfastinfoset-java', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjsoup-java', 'libjsr305-java', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblsan0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libuv1:amd64', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'multiqc', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'perl', 'perl-modules-5.32', 'pigz', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-future', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-requests', 'python3-retrying', 'python3-roman', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-toposort', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-brio', 'r-cran-cachem', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-corrplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gprofiler', 'r-cran-gtable', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-locfit', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-promises', 'r-cran-ps', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rna-star', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64', 'pigx-rnaseq'] 3m42.2s INFO: Running scripts post_remove 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_remove_exceptions'] 3m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_remove_exceptions'] 3m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--purge', 'ant', 'ant-optional', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cutadapt', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'java-common', 'libactivation-java', 'libaec0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfastinfoset-java', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjsoup-java', 'libjsr305-java', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblsan0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libuv1:amd64', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'multiqc', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'perl', 'perl-modules-5.32', 'pigz', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-future', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-requests', 'python3-retrying', 'python3-roman', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-toposort', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-brio', 'r-cran-cachem', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-corrplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gprofiler', 'r-cran-gtable', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-locfit', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-promises', 'r-cran-ps', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rna-star', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 3m43.5s DUMP: dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed (Reading database ... 6791 files and directories currently installed.) Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190909+deb11u1) ... dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed dpkg: warning: ignoring request to remove cutadapt which isn't installed dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for docutils-common (0.16+dfsg-4) ... 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installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-10-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libghc-pandoc-citeproc-data which isn't installed dpkg: warning: ignoring request to remove libgif7 which 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Purging configuration files for openssl (1.1.1w-0+deb11u1) ... dpkg: warning: ignoring request to remove pandoc which isn't installed dpkg: warning: ignoring request to remove pandoc-citeproc which isn't installed dpkg: warning: ignoring request to remove pandoc-data which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove pigz which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed Purging configuration files for python-matplotlib-data (3.3.4-1) ... Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-alabaster which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-coloredlogs which isn't installed dpkg: warning: ignoring request to remove python3-colormath which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove 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remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for r-base-core (4.0.4-1) ... dpkg: warning: ignoring request to remove r-bioc-annotate which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-deseq2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-genefilter which isn't installed dpkg: warning: ignoring request to remove r-bioc-geneplotter which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-tximport which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-brio which isn't installed dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed dpkg: warning: ignoring request to remove r-cran-callr which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-colourpicker which isn't installed dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed dpkg: warning: ignoring request to remove r-cran-corrplot which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-crosstalk which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-data.table which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-diffobj which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed Purging configuration files for r-cran-dt (0.17+dfsg-3) ... dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-ggrepel which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gprofiler which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-locfit which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-markdown which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-miniui which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pheatmap which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgbuild which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgload which isn't installed dpkg: warning: ignoring request to remove r-cran-plogr which isn't installed dpkg: warning: ignoring request to remove r-cran-plotly which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-processx which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-ps which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which isn't installed Purging configuration files for r-cran-rcurl (1.98-1.2-1+b1) ... dpkg: warning: ignoring request to remove r-cran-rematch2 which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rjson which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed Purging configuration files for r-cran-rmarkdown (2.6+dfsg-1) ... dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-shinyjs which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-survival which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-waldo which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove rna-star which isn't installed dpkg: warning: ignoring request to remove salmon which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.30) ... Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove snakemake which isn't installed dpkg: warning: ignoring request to remove sphinx-common which isn't installed dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove trim-galore which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--purge', 'ant', 'ant-optional', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'cutadapt', 'default-jre', 'default-jre-headless', 'docutils-common', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'java-common', 'libactivation-java', 'libaec0:amd64', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasan6:amd64', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbibutils7', 'libbigwig0:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcmark-gfm-extensions0:amd64', 'libcmark-gfm0:amd64', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libcrypt-dev:amd64', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfastinfoset-java', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgfortran5:amd64', 'libghc-pandoc-citeproc-data', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libistack-commons-java', 'libitm1:amd64', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-twitter-bootstrap-datepicker', 'libjs-underscore', 'libjs-util', 'libjsoup-java', 'libjsr305-java', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libllvm11:amd64', 'liblsan0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-java:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libnsl-dev:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsis-base-java', 'libsis-base-jni', 'libsis-jhdf5-java', 'libsis-jhdf5-jni', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstaden-read14:amd64', 'libstax-ex-java', 'libstdc++-10-dev:amd64', 'libstreambuffer-java', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtxw2-java', 'libubsan1:amd64', 'libuv1:amd64', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxss1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'multiqc', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-highlight.js', 'node-html5shiv', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-normalize.css', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-citeproc', 'pandoc-data', 'perl', 'perl-modules-5.32', 'pigz', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-distutils', 'python3-dnaio', 'python3-docutils', 'python3-future', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lzstring', 'python3-markdown', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-ratelimiter', 'python3-requests', 'python3-retrying', 'python3-roman', 'python3-scipy', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-toposort', 'python3-traitlets', 'python3-tz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genefilter', 'r-bioc-geneplotter', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4vectors', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-brio', 'r-cran-cachem', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-corrplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-dbi', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggrepel', 'r-cran-glue', 'r-cran-gprofiler', 'r-cran-gtable', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-locfit', 'r-cran-magrittr', 'r-cran-markdown', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-mime', 'r-cran-miniui', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-openssl', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plogr', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-promises', 'r-cran-ps', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rprojroot', 'r-cran-rsqlite', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rna-star', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'sphinx-rtd-theme-common', 'trim-galore', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'zlib1g-dev:amd64'] 3m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--purge', 'pigx-rnaseq'] 3m43.5s DUMP: dpkg: warning: ignoring request to remove pigx-rnaseq which isn't installed 3m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--purge', 'pigx-rnaseq'] 3m43.5s INFO: Running scripts post_purge 3m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_purge_exceptions'] 3m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_purge_exceptions'] 3m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--purge', '--pending'] 3m43.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--purge', '--pending'] 3m43.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--remove', '--pending'] 3m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg', '--remove', '--pending'] 3m43.6s INFO: Running scripts post_test 3m43.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_test_exceptions'] 3m43.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'tmp/scripts/post_test_exceptions'] 3m43.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 3m43.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 3m44.5s DEBUG: No broken symlinks as far as we can find. 3m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-divert', '--list'] 3m44.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 3m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'dpkg-divert', '--list'] 3m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'clean'] 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1', 'apt-get', 'clean'] 3m44.6s DEBUG: Recording chroot state 3m45.3s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-mathjax, fonts-lyx, fonts-glyphicons-halflings, fonts-font-awesome, ttf-bitstream-vera, fonts-dejavu-core, fonts-lato /usr/share/fonts/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-lyx, fonts-glyphicons-halflings, fonts-font-awesome, ttf-bitstream-vera, fonts-dejavu-core, fonts-lato /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned /usr/share/javascript/ owned by: node-html5shiv, node-esprima, libjs-util, libjs-twitter-bootstrap-datepicker, libjs-sprintf-js, libjs-sphinxdoc, libjs-underscore, libjs-prettify, libjs-modernizr, libjs-mathjax, libjs-json, libjs-jquery-ui, libjs-jquery-tablesorter, libjs-jquery-selectize.js, libjs-microplugin.js, libjs-sifter.js, libjs-jquery-metadata, libjs-jquery-datatables-extensions, libjs-jquery-datatables, libjs-jquery, libjs-inherits, libjs-highlight.js, libjs-es5-shim, libjs-d3-format, libjs-d3, libjs-bootstrap, fonts-mathjax, fonts-font-awesome, node-normalize.css /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 3m45.3s INFO: PASS: Installation and purging test. 3m45.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/shm'] 3m45.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/shm'] 3m45.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/console'] 3m45.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/console'] 3m45.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/ptmx'] 3m45.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/ptmx'] 3m45.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/pts'] 3m45.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/dev/pts'] 3m45.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/proc'] 3m45.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1/proc'] 3m45.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 3m45.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnmpk3yy1'] 3m45.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpnmpk3yy1 3m45.8s INFO: PASS: All tests. 3m45.8s INFO: piuparts run ends. ret=0 End: 2024-04-19 04:43:21 GMT