Start: 2024-01-15 16:43:29 GMT Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt qcumber=2.3.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye --no-upgrade-test --apt qcumber=2.3.0-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpk15vu6qo 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpk15vu6qo 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/ptmx'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/ptmx'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpk15vu6qo/tmp/scripts/ 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpk15vu6qo/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'update'] 0m2.3s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'update'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: cd994be14815166bf41ad7cebd6f56fc - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'clean'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'clean'] 0m4.0s DEBUG: Recording chroot state 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u6 install ok installed libc6:amd64 libc6 2.31-13+deb11u6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u10 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-divert', '--list'] 0m4.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-divert', '--list'] 0m4.4s INFO: Running scripts is_testable 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/is_testable_uninstallable'] 0m4.4s INFO: apt-cache does not know about any of the requested packages 0m4.4s INFO: Running scripts pre_test 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_test_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_test_root_password'] 0m4.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_test_root_password'] 0m4.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 0m5.3s DEBUG: No broken symlinks as far as we can find. 0m5.3s INFO: Running scripts pre_install 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_database-server'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_extras'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_extras'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_log_alternatives'] 0m5.4s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_install_log_alternatives'] 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 0m6.2s DEBUG: No broken symlinks as far as we can find. 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-cache', 'policy'] 0m6.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-cache', 'policy'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-cache', 'policy', 'qcumber'] 0m6.7s DUMP: qcumber: Installed: (none) Candidate: 2.3.0-2 Version table: 2.3.0-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-cache', 'policy', 'qcumber'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', '-y', 'install', 'qcumber=2.3.0-2'] 0m55.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax git git-man libblas3 libbrotli1 libbsd0 libc-ares2 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-d3-format libjs-inherits libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-sprintf-js libjs-underscore libjs-util liblapack3 liblcms2-2 libldap-2.4-2 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libnode72 libnotify-bin libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 littler mailcap media-types mime-support mocha node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openssl perl perl-modules-5.32 python-matplotlib-data python3 python3-appdirs python3-attr python3-biopython python3-certifi python3-chardet python3-configargparse python3-cycler python3-dateutil python3-datrie python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-pil python3-pkg-resources python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-ratelimiter python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-setuptools python3-six python3-smmap python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.9 python3.9-minimal r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-assertthat r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-conquer r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-sparsem r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xml readline-common sensible-utils sgml-base shared-mime-info snakemake sphinx-rtd-theme-common ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip Suggested packages: gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gdbm-l10n libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils tcl8.6 tk8.6 chai javascript-common npm perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-renderpm python3-psycopg2 python3-scipy raxml samtools t-coffee wise w3-dtd-mathml python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pil-doc python3-pil-dbg python-psutil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc python3.9-venv python3.9-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-cairo r-cran-covr r-cran-htmlwidgets r-cran-knitr r-cran-rmarkdown r-cran-prettycode r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-png r-cran-jpeg r-cran-viridis r-cran-unitizer r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-rpart r-cran-sf r-cran-svglite r-cran-dbi r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-magick r-cran-httr r-cran-curl r-cran-getopt r-cran-base64enc r-cran-bit64 r-cran-cpp11 r-cran-bitops r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-inline r-cran-dichromat r-cran-mockery r-cran-usethis r-cran-bench r-cran-blob r-cran-formattable r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-zeallot readline-doc sgml-base-doc debhelper Recommended packages: patch less ssh-client libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs javascript-common libldap-common libgpm2 notification-daemon publicsuffix libsasl2-modules bzip2 file xz-utils nodejs-doc netbase python-biopython-doc ncbi-blast+ python3-pygments python3-tk python3-olefile python3-renderpm r-recommended r-base-dev r-doc-html r-cran-runit r-cran-cliapp r-cran-mockery r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr r-cran-xml2 r-cran-lubridate r-cran-domc r-cran-abind r-cran-codetools r-cran-curl r-cran-rmarkdown r-cran-mockr r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-generics r-cran-dbi cwltool imagemagick python3-tz python3-yappi python3-networkx python3-pygraphviz python3-azure-storage python3-boto3 python3-botocore python3-drmaa python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax git git-man libblas3 libbrotli1 libbsd0 libc-ares2 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-d3-format libjs-inherits libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-sprintf-js libjs-underscore libjs-util liblapack3 liblcms2-2 libldap-2.4-2 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libnode72 libnotify-bin libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 littler mailcap media-types mime-support mocha node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openssl perl perl-modules-5.32 python-matplotlib-data python3 python3-appdirs python3-attr python3-biopython python3-certifi python3-chardet python3-configargparse python3-cycler python3-dateutil python3-datrie python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-pil python3-pkg-resources python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-ratelimiter python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-setuptools python3-six python3-smmap python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.9 python3.9-minimal qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-assertthat r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-conquer r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-sparsem r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xml readline-common sensible-utils sgml-base shared-mime-info snakemake sphinx-rtd-theme-common ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 388 newly installed, 0 to remove and 0 not upgraded. Need to get 172 MB of archives. After this operation, 551 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u2 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u2 [4106 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u2 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-1 [485 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 coinor-libclp1 amd64 1.17.5+repack1-1 [939 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-2 [433 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 coinor-libcbc3 amd64 2.10.5+ds1-3 [715 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 coinor-cbc amd64 2.10.5+ds1-3 [14.7 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u9 [344 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 git-man all 1:2.30.2-1+deb11u2 [1828 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 git amd64 1:2.30.2-1+deb11u2 [5518 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u3 [102 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u1 [772 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u9 [347 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u4 [290 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u1 [147 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libjs-angularjs all 1.8.2-2 [817 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libjs-d3-format all 1:1.4.1-3 [16.9 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libjs-inherits all 2.0.4-1 [3228 B] Get:101 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libjs-sprintf-js all 1.1.2+ds1-2 [12.3 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.12~dfsg-1~deb11u4 [8332 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.12~dfsg-1~deb11u4 [148 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 node-inherits all 2.0.4-1 [4204 B] Get:111 http://deb.debian.org/debian bullseye/main amd64 libjs-util all 0.10.3-4 [9620 B] Get:112 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libnotify4 amd64 0.7.9-3 [23.7 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libnotify-bin amd64 0.7.9-3 [14.2 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:135 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 node-ansi-colors all 4.1.1-2 [13.2 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 node-browser-stdout all 1.3.1-2 [3268 B] Get:139 http://deb.debian.org/debian bullseye/main amd64 node-camelcase all 6.2.0-2 [5512 B] Get:140 http://deb.debian.org/debian bullseye/main amd64 node-color-name all 1.1.4+~1.1.1-1 [5788 B] Get:141 http://deb.debian.org/debian bullseye/main amd64 node-color-convert all 1.9.3-1 [10.2 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 node-ansi-styles all 4.2.1-1 [7600 B] Get:143 http://deb.debian.org/debian bullseye/main amd64 node-escape-string-regexp all 4.0.0-1 [4116 B] Get:144 http://deb.debian.org/debian bullseye/main amd64 node-has-flag all 4.0.0-1 [4076 B] Get:145 http://deb.debian.org/debian bullseye/main amd64 node-supports-color all 8.1.0+~7.2.0-1 [6736 B] Get:146 http://deb.debian.org/debian bullseye/main amd64 node-chalk all 4.1.0-1 [15.0 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 node-is-extglob all 2.1.1-1 [4128 B] Get:148 http://deb.debian.org/debian bullseye/main amd64 node-is-glob all 4.0.1-1 [6312 B] Get:149 http://deb.debian.org/debian bullseye/main amd64 node-binary-extensions all 2.2.0-1 [4352 B] Get:150 http://deb.debian.org/debian bullseye/main amd64 node-is-binary-path all 2.1.0-1 [3432 B] Get:151 http://deb.debian.org/debian bullseye/main amd64 node-normalize-path all 3.0.0-2 [5752 B] Get:152 http://deb.debian.org/debian bullseye/main amd64 node-anymatch all 3.1.1+~2.2.2-1 [28.5 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 node-graceful-fs all 4.2.4+repack-1 [13.1 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 node-set-immediate-shim all 2.0.0-1 [3600 B] Get:155 http://deb.debian.org/debian bullseye/main amd64 node-readdirp all 3.5.0-2 [11.3 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 node-async-each all 1.0.3-1 [4024 B] Get:157 http://deb.debian.org/debian bullseye/main amd64 node-is-buffer all 2.0.5-1 [4048 B] Get:158 http://deb.debian.org/debian bullseye/main amd64 node-kind-of all 6.0.3+dfsg-1 [10.0 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 node-is-number all 7.0.0-1.1 [5860 B] Get:160 http://deb.debian.org/debian bullseye/main amd64 node-repeat-string all 1.6.1-1 [5180 B] Get:161 http://deb.debian.org/debian bullseye/main amd64 node-to-regex-range all 5.0.1-2 [10.2 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 node-fill-range all 7.0.1-2 [7872 B] Get:163 http://deb.debian.org/debian bullseye/main amd64 node-braces all 3.0.2+~3.0.0-1 [20.6 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 node-path-is-absolute all 2.0.0-1 [3864 B] Get:165 http://deb.debian.org/debian bullseye/main amd64 node-path-dirname all 1.0.2-1.1 [3972 B] Get:166 http://deb.debian.org/debian bullseye/main amd64 node-glob-parent all 5.1.1+~5.1.0-2 [6672 B] Get:167 http://deb.debian.org/debian bullseye/main amd64 node-chokidar all 3.4.3-3 [32.0 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 node-ms all 2.1.3+~cs0.7.31-1 [5612 B] Get:169 http://deb.debian.org/debian bullseye/main amd64 node-debug all 4.3.1+~cs4.1.5-1 [17.3 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 node-decamelize all 4.0.0-1 [3944 B] Get:171 http://deb.debian.org/debian bullseye/main amd64 node-diff all 4.0.2~dfsg-2 [65.0 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 node-p-limit all 3.1.0+~cs2.3.0-1 [6904 B] Get:173 http://deb.debian.org/debian bullseye/main amd64 node-p-locate all 5.0.0-1 [5080 B] Get:174 http://deb.debian.org/debian bullseye/main amd64 node-path-exists all 4.0.0-2 [3840 B] Get:175 http://deb.debian.org/debian bullseye/main amd64 node-locate-path all 6.0.0-1 [5264 B] Get:176 http://deb.debian.org/debian bullseye/main amd64 node-find-up all 5.0.0-1 [5840 B] Get:177 http://deb.debian.org/debian bullseye/main amd64 node-fs.realpath all 1.0.0-1.1 [5780 B] Get:178 http://deb.debian.org/debian bullseye/main amd64 node-wrappy all 1.0.2-1.1 [3352 B] Get:179 http://deb.debian.org/debian bullseye/main amd64 node-once all 1.4.0-3 [4344 B] Get:180 http://deb.debian.org/debian bullseye/main amd64 node-inflight all 1.0.6-1.1 [3568 B] Get:181 http://deb.debian.org/debian bullseye/main amd64 node-balanced-match all 1.0.0-1 [4528 B] Get:182 http://deb.debian.org/debian bullseye/main amd64 node-brace-expansion all 2.0.0-1 [7184 B] Get:183 http://deb.debian.org/debian bullseye/main amd64 node-minimatch all 3.0.4+~3.0.3-1+deb11u2 [16.1 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 node-glob all 7.1.6+~7.1.3-1 [129 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 node-growl all 1.10.5-2 [7356 B] Get:186 http://deb.debian.org/debian bullseye/main amd64 node-he all 1.2.0-1 [36.7 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 node-is-plain-obj all 3.0.0-1 [3916 B] Get:188 http://deb.debian.org/debian bullseye/main amd64 node-sprintf-js all 1.1.2+ds1-2 [1836 B] Get:189 http://deb.debian.org/debian bullseye/main amd64 node-argparse all 2.0.1-1 [34.5 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 node-esprima all 4.0.1+ds+~4.0.2-2 [69.0 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 node-js-yaml all 3.14.1+dfsg+~3.12.6-2 [44.8 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 node-safe-buffer all 5.2.1+~cs2.1.2-1 [15.5 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 node-randombytes all 2.1.0-1 [4104 B] Get:194 http://deb.debian.org/debian bullseye/main amd64 node-serialize-javascript all 5.0.1-2 [11.5 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 node-strip-json-comments all 3.1.1-1 [5168 B] Get:196 http://deb.debian.org/debian bullseye/main amd64 node-isexe all 2.0.0-5 [4632 B] Get:197 http://deb.debian.org/debian bullseye/main amd64 node-which all 2.0.2+~cs1.3.2-1 [8436 B] Get:198 http://deb.debian.org/debian bullseye/main amd64 node-ansi-regex all 5.0.1-1~deb11u1 [4704 B] Get:199 http://deb.debian.org/debian bullseye/main amd64 node-strip-ansi all 6.0.0-2 [4044 B] Get:200 http://deb.debian.org/debian bullseye/main amd64 node-clone all 2.1.2-2 [8132 B] Get:201 http://deb.debian.org/debian bullseye/main amd64 node-defaults all 1.0.3-2 [3612 B] Get:202 http://deb.debian.org/debian bullseye/main amd64 node-wcwidth.js all 1.0.0-1.1 [6652 B] Get:203 http://deb.debian.org/debian bullseye/main amd64 node-string-width all 4.2.0-1 [9716 B] Get:204 http://deb.debian.org/debian bullseye/main amd64 node-wide-align all 1.1.3-1 [3896 B] Get:205 http://deb.debian.org/debian bullseye/main amd64 node-require-directory all 2.1.1-1.1 [5596 B] Get:206 http://deb.debian.org/debian bullseye/main amd64 node-get-caller-file all 1.0.2-1.1 [3056 B] Get:207 http://deb.debian.org/debian bullseye/main amd64 node-set-blocking all 2.0.0-1.1 [4036 B] Get:208 http://deb.debian.org/debian bullseye/main amd64 node-require-main-filename all 2.0.0-1 [4108 B] Get:209 http://deb.debian.org/debian bullseye/main amd64 node-wrap-ansi all 4.0.0-2 [5540 B] Get:210 http://deb.debian.org/debian bullseye/main amd64 node-cliui all 4.1.0-2 [7964 B] Get:211 http://deb.debian.org/debian bullseye/main amd64 node-which-module all 2.0.0-1 [3792 B] Get:212 http://deb.debian.org/debian bullseye/main amd64 node-end-of-stream all 1.4.4-1 [4356 B] Get:213 http://deb.debian.org/debian bullseye/main amd64 node-pump all 3.0.0-4 [4936 B] Get:214 http://deb.debian.org/debian bullseye/main amd64 node-get-stream all 6.0.0-1 [7172 B] Get:215 http://deb.debian.org/debian bullseye/main amd64 node-is-stream all 2.0.0-1 [4004 B] Get:216 http://deb.debian.org/debian bullseye/main amd64 node-merge-stream all 2.0.0+~1.1.2-1 [5036 B] Get:217 http://deb.debian.org/debian bullseye/main amd64 node-mimic-fn all 3.1.0-1 [5180 B] Get:218 http://deb.debian.org/debian bullseye/main amd64 node-npm-run-path all 2.0.2-2 [4412 B] Get:219 http://deb.debian.org/debian bullseye/main amd64 node-shebang-regex all 3.0.0-1 [3352 B] Get:220 http://deb.debian.org/debian bullseye/main amd64 node-shebang-command all 1.2.0-1.1 [3132 B] Get:221 http://deb.debian.org/debian bullseye/main amd64 node-signal-exit all 3.0.3-1 [6172 B] Get:222 http://deb.debian.org/debian bullseye/main amd64 node-execa all 4.1.0+dfsg+~cs19.3.6-5 [28.1 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 node-invert-kv all 3.0.1-1 [3904 B] Get:224 http://deb.debian.org/debian bullseye/main amd64 node-lcid all 3.1.1-1 [5280 B] Get:225 http://deb.debian.org/debian bullseye/main amd64 node-mem all 1.1.0-1.1 [4308 B] Get:226 http://deb.debian.org/debian bullseye/main amd64 node-os-locale all 5.0.0-1 [4876 B] Get:227 http://deb.debian.org/debian bullseye/main amd64 node-y18n all 4.0.0-4 [6256 B] Get:228 http://deb.debian.org/debian bullseye/main amd64 node-yargs-parser all 18.1.3+~15.0.0-1 [24.0 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 node-yargs all 15.3.1+repack-2 [109 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 mocha all 8.2.1+ds1+~cs29.4.27-3 [157 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 node-object-assign all 4.1.1-3 [4460 B] Get:232 http://deb.debian.org/debian bullseye/main amd64 node-util all 0.10.3-4 [2960 B] Get:233 http://deb.debian.org/debian bullseye/main amd64 node-assert all 1.5.0-1 [8892 B] Get:234 http://deb.debian.org/debian bullseye/main amd64 node-commander all 6.2.1-2 [38.3 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 node-d3-array all 1.2.4-3 [19.2 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 node-d3-axis all 1.0.12-3 [10.1 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 node-d3-dispatch all 1.0.6-2 [7856 B] Get:238 http://deb.debian.org/debian bullseye/main amd64 node-d3-selection all 1.4.0-6 [30.7 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 node-d3-drag all 1.2.5-2 [13.9 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 node-d3-color all 1.2.8-2 [15.0 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 node-d3-interpolate all 1.4.0-2 [18.5 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 node-d3-ease all 1.0.5-3 [9932 B] Get:243 http://deb.debian.org/debian bullseye/main amd64 node-d3-timer all 1.0.10-1 [8608 B] Get:244 http://deb.debian.org/debian bullseye/main amd64 node-d3-transition all 1.3.2-3 [22.2 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 node-d3-brush all 1.1.5-2 [181 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 node-d3-path all 1.0.9-2 [8212 B] Get:247 http://deb.debian.org/debian bullseye/main amd64 node-d3-chord all 1.0.6-3 [10.0 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 node-d3-collection all 1.0.7-3 [11.7 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 node-d3-contour all 1.3.2-4 [13.6 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 node-iconv-lite all 0.5.1-3 [128 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 node-d3-queue all 3.0.7-11 [9828 B] Get:252 http://deb.debian.org/debian bullseye/main amd64 node-rw all 1.3.3-2 [7096 B] Get:253 http://deb.debian.org/debian bullseye/main amd64 node-d3-dsv all 1.1.1-5 [14.5 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 node-d3-fetch all 1.2.0-1 [7344 B] Get:255 http://deb.debian.org/debian bullseye/main amd64 node-d3-quadtree all 1.0.7-2 [13.1 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 node-d3-force all 1.2.1-2 [368 kB] Get:257 http://deb.debian.org/debian bullseye/main amd64 node-d3-format all 1:1.4.1-3 [9004 B] Get:258 http://deb.debian.org/debian bullseye/main amd64 node-d3-geo all 1.11.9-4 [53.6 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 node-d3-hierarchy all 1.1.8-3 [28.6 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 node-d3-polygon all 1.0.5-3 [7396 B] Get:261 http://deb.debian.org/debian bullseye/main amd64 node-d3-random all 1.1.2-3 [7184 B] Get:262 http://deb.debian.org/debian bullseye/main amd64 node-d3-time all 1.0.11-4 [14.6 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 node-d3-time-format all 2.1.3-3 [18.9 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale all 2.2.2-3 [31.5 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale-chromatic all 1.5.0-2 [18.5 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 node-d3-shape all 1.3.7-2 [40.4 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 node-d3-voronoi all 1.1.4-3 [17.1 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 node-d3-zoom all 1.8.3-2 [20.1 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 node-d3 all 5.16.0-4 [208 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 node-lodash all 4.17.21+dfsg+~cs8.31.173-1 [385 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 node-graphlibrary all 2.2.0+really2.1.8+dfsg-3 [53.2 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 node-dagre-layout all 0.8.8+really0.8.5+dfsg-4 [42.4 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 node-dagre-d3-renderer all 0.6.4+dfsg-3 [601 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 python3-appdirs all 1.4.4-1 [12.7 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:281 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get:282 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get:283 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:284 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:285 http://deb.debian.org/debian bullseye/main amd64 python3-configargparse all 1.2.3-1 [25.2 kB] Get:286 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:287 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:288 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:289 http://deb.debian.org/debian bullseye/main amd64 python3-datrie amd64 0.8.2-1+b1 [98.5 kB] Get:290 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:291 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:292 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get:293 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get:294 http://deb.debian.org/debian bullseye/main amd64 python3-smmap all 4.0.0-1 [21.0 kB] Get:295 http://deb.debian.org/debian bullseye/main amd64 python3-gitdb all 4.0.5-1 [46.5 kB] Get:296 http://deb.debian.org/debian bullseye/main amd64 python3-git all 3.1.14-1 [119 kB] Get:297 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:298 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:299 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:300 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:301 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:302 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:303 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:304 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:305 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get:306 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get:307 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:308 http://deb.debian.org/debian bullseye/main amd64 python3-jupyter-core all 4.7.1-1+deb11u1 [44.2 kB] Get:309 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:310 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:311 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:312 http://deb.debian.org/debian bullseye/main amd64 python3-nbformat all 5.1.2-1 [51.6 kB] Get:313 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get:314 http://deb.debian.org/debian bullseye/main amd64 python3-pulp all 1.6.0+dfsg1-5 [54.0 kB] Get:315 http://deb.debian.org/debian bullseye/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get:316 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:317 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:318 http://deb.debian.org/debian bullseye/main amd64 python3-toposort all 1.6-1 [7620 B] Get:319 http://deb.debian.org/debian bullseye/main amd64 python3-wrapt amd64 1.12.1-4+b1 [39.3 kB] Get:320 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:321 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:322 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get:323 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:324 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:325 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get:326 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get:327 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get:328 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get:329 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get:330 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:331 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get:332 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get:333 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get:334 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get:335 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get:336 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:337 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get:338 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:339 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:340 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get:341 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:342 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get:343 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get:344 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get:345 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:346 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get:347 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get:348 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:349 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:350 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get:351 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get:352 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:353 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get:354 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get:355 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get:356 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get:357 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get:358 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get:359 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:360 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get:361 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:362 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get:363 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get:364 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:365 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get:366 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:367 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get:368 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get:369 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get:370 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get:371 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get:372 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get:373 http://deb.debian.org/debian bullseye/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get:374 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:375 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:376 http://deb.debian.org/debian bullseye/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:377 http://deb.debian.org/debian bullseye/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:378 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml amd64 3.99-0.5-1 [1722 kB] Get:379 http://deb.debian.org/debian bullseye/main amd64 r-bioc-savr all 1.28.0-1 [654 kB] Get:380 http://deb.debian.org/debian bullseye/main amd64 r-cran-sparsem amd64 1.81-1 [905 kB] Get:381 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixmodels all 0.4-1-3 [380 kB] Get:382 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get:383 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpparmadillo amd64 0.10.2.1.0-1 [1149 kB] Get:384 http://deb.debian.org/debian bullseye/main amd64 r-cran-conquer amd64 1.0.2-1 [105 kB] Get:385 http://deb.debian.org/debian bullseye/main amd64 r-cran-quantreg amd64 5.85-1 [1518 kB] Get:386 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:387 http://deb.debian.org/debian bullseye/main amd64 snakemake all 5.24.1-2 [6107 kB] Get:388 http://deb.debian.org/debian bullseye/main amd64 qcumber all 2.3.0-2 [50.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 172 MB in 2s (85.4 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u2) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up node-path-dirname (1.0.2-1.1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up node-minimatch (3.0.4+~3.0.3-1+deb11u2) ... Setting up coinor-libcgl1 (0.60.3+repack1-2) ... Setting up node-d3-geo (1.11.9-4) ... Setting up node-set-immediate-shim (2.0.0-1) ... Setting up node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Setting up mailcap (3.69) ... Setting up node-npm-run-path (2.0.2-2) ... Setting up node-color-convert (1.9.3-1) ... Setting up node-lodash (4.17.21+dfsg+~cs8.31.173-1) ... Setting up node-d3-random (1.1.2-3) ... Setting up node-async-each (1.0.3-1) ... Setting up python3.9 (3.9.2-1) ... Setting up node-is-extglob (2.1.1-1) ... Setting up node-ms (2.1.3+~cs0.7.31-1) ... Setting up node-shebang-command (1.2.0-1.1) ... Setting up node-ansi-colors (4.1.1-2) ... Setting up node-fs.realpath (1.0.0-1.1) ... Setting up node-diff (4.0.2~dfsg-2) ... Setting up coinor-libcbc3:amd64 (2.10.5+ds1-3) ... Setting up node-d3-timer (1.0.10-1) ... Setting up node-object-assign (4.1.1-3) ... Setting up node-is-glob (4.0.1-1) ... Setting up node-d3-color (1.2.8-2) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up node-d3-interpolate (1.4.0-2) ... Setting up node-d3-queue (3.0.7-11) ... Setting up node-mem (1.1.0-1.1) ... Setting up node-supports-color (8.1.0+~7.2.0-1) ... Setting up node-invert-kv (3.0.1-1) ... Setting up node-d3-format (1:1.4.1-3) ... Setting up node-p-limit (3.1.0+~cs2.3.0-1) ... Setting up mime-support (3.66) ... Setting up node-ansi-regex (5.0.1-1~deb11u1) ... Setting up node-d3-hierarchy (1.1.8-3) ... Setting up node-d3-ease (1.0.5-3) ... Setting up node-strip-json-comments (3.1.1-1) ... Setting up node-once (1.4.0-3) ... Setting up node-browser-stdout (1.3.1-2) ... Setting up node-get-caller-file (1.0.2-1.1) ... Setting up node-require-main-filename (2.0.0-1) ... Setting up node-d3-time-format (2.1.3-3) ... Setting up node-d3-scale-chromatic (1.5.0-2) ... Setting up node-serialize-javascript (5.0.1-2) ... Setting up node-isexe (2.0.0-5) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up node-path-exists (4.0.0-2) ... Setting up node-d3-chord (1.0.6-3) ... Setting up node-escape-string-regexp (4.0.0-1) ... Setting up node-p-locate (5.0.0-1) ... Setting up node-which-module (2.0.0-1) ... Setting up node-decamelize (4.0.0-1) ... Setting up node-normalize-path (3.0.0-2) ... Setting up node-kind-of (6.0.3+dfsg-1) ... Setting up node-growl (1.10.5-2) ... Setting up node-d3-selection (1.4.0-6) ... Setting up python3 (3.9.2-3) ... Setting up node-is-binary-path (2.1.0-1) ... Setting up node-debug (4.3.1+~cs4.1.5-1) ... Setting up libjs-util (0.10.3-4) ... Setting up node-camelcase (6.2.0-2) ... Setting up node-d3-axis (1.0.12-3) ... Setting up node-d3-shape (1.3.7-2) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up node-yargs-parser (18.1.3+~15.0.0-1) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up liberror-perl (0.17029-1) ... Setting up node-wcwidth.js (1.0.0-1.1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up node-locate-path (6.0.0-1) ... Setting up python3-roman (2.0.0-5) ... Setting up node-d3-drag (1.2.5-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up node-rw (1.3.3-2) ... Setting up coinor-cbc (2.10.5+ds1-3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up node-ansi-styles (4.2.1-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up node-d3-scale (2.2.2-3) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.59-2) ... Setting up node-strip-ansi (6.0.0-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up node-chalk (4.1.0-1) ... Setting up git (1:2.30.2-1+deb11u2) ... Setting up node-which (2.0.2+~cs1.3.2-1) ... Setting up node-lcid (3.1.1-1) ... Setting up node-d3-force (1.2.1-2) ... Setting up node-d3-contour (1.3.2-4) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up node-inflight (1.0.6-1.1) ... Setting up node-glob-parent (5.1.1+~5.1.0-2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-datrie:amd64 (0.8.2-1+b1) ... Setting up node-d3-dsv (1.1.1-5) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up node-anymatch (3.1.1+~2.2.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up node-d3-transition (1.3.2-3) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-smmap (4.0.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up node-string-width (4.2.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-toposort (1.6-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-configargparse (1.2.3-1) ... Setting up python3-attr (20.3.0-1) ... Setting up node-is-number (7.0.0-1.1) ... Setting up node-end-of-stream (1.4.4-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up node-pump (3.0.0-4) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-pulp (1.6.0+dfsg1-5) ... /usr/lib/python3/dist-packages/pulp/pulp.py:700: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self /usr/lib/python3/dist-packages/pulp/pulp.py:720: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self Setting up node-d3-zoom (1.8.3-2) ... Setting up node-find-up (5.0.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up node-d3-fetch (1.2.0-1) ... Setting up node-util (0.10.3-4) ... Setting up python3-gitdb (4.0.5-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-chardet (4.0.0-1) ... Setting up node-wrap-ansi (4.0.0-2) ... Setting up node-glob (7.1.6+~7.1.3-1) ... Setting up node-readdirp (3.5.0-2) ... Setting up python3-git (3.1.14-1) ... Setting up node-get-stream (6.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up r-cran-farver (2.0.3-1+b1) ... Setting up node-assert (1.5.0-1) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up node-d3-brush (1.1.5-2) ... Setting up python3-traitlets (5.0.5-1) ... Setting up r-cran-sparsem (1.81-1) ... Setting up node-wide-align (1.1.3-1) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up python3-jupyter-core (4.7.1-1+deb11u1) ... Setting up node-cliui (4.1.0-2) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up node-to-regex-range (5.0.1-2) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up littler (0.3.12-1) ... Setting up node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-praise (1.0.0-4) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up node-d3 (5.16.0-4) ... Setting up r-cran-glue (1.4.2-1) ... Setting up node-os-locale (5.0.0-1) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up r-cran-plyr (1.8.6-2) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-cran-rcpparmadillo (0.10.2.1.0-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up node-fill-range (7.0.1-2) ... Setting up node-yargs (15.3.1+repack-2) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-cran-matrixmodels (0.4-1-3) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up python3-nbformat (5.1.2-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-cran-conquer (1.0.2-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up node-braces (3.0.2+~3.0.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up node-chokidar (3.4.3-3) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-cran-quantreg (5.85-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up mocha (8.2.1+ds1+~cs29.4.27-3) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up node-dagre-d3-renderer (0.6.4+dfsg-3) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-savr (1.28.0-1) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up snakemake (5.24.1-2) ... Setting up qcumber (2.3.0-2) ... ************************************************************************* * Minikraken DB is missing. Either move the according files to * * /var/lib/kraken/minikraken_20141208 * or call the script /usr/share/doc/qcumber/get-minikrakendb as root. * ************************************************************************* Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m55.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', '-y', 'install', 'qcumber=2.3.0-2'] 0m55.2s INFO: Running scripts post_install 0m55.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_install_exceptions'] 0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_install_exceptions'] 0m55.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_install_log_alternatives'] 0m55.3s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=xdg-utils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/open open /usr/bin/xdg-open 50 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/xdg-open.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=nodejs: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --remove js /usr/bin/node LOG-ALTERNATIVES: dpkg=nodejs: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/js js /usr/bin/nodejs 200 --slave /usr/share/man/man1/js.1.gz js.1.gz /usr/share/man/man1/nodejs.1.gz LOG-ALTERNATIVES: dpkg=perl: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=mailcap: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --quiet --install /usr/bin/open open /usr/bin/run-mailcap 30 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/run-mailcap.1.gz LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst-buildhtml rst-buildhtml /usr/share/docutils/scripts/python3/rst-buildhtml 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2html rst2html /usr/share/docutils/scripts/python3/rst2html 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2html4 rst2html4 /usr/share/docutils/scripts/python3/rst2html4 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2html5 rst2html5 /usr/share/docutils/scripts/python3/rst2html5 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2latex rst2latex /usr/share/docutils/scripts/python3/rst2latex 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2man rst2man /usr/share/docutils/scripts/python3/rst2man 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2odt rst2odt /usr/share/docutils/scripts/python3/rst2odt 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2odt_prepstyles rst2odt_prepstyles /usr/share/docutils/scripts/python3/rst2odt_prepstyles 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2pseudoxml rst2pseudoxml /usr/share/docutils/scripts/python3/rst2pseudoxml 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2s5 rst2s5 /usr/share/docutils/scripts/python3/rst2s5 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2xetex rst2xetex /usr/share/docutils/scripts/python3/rst2xetex 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rst2xml rst2xml /usr/share/docutils/scripts/python3/rst2xml 30 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=qcumber=2.3.0-2: /usr/bin/update-alternatives --install /usr/bin/rstpep2html rstpep2html /usr/share/docutils/scripts/python3/rstpep2html 30 0m55.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_install_log_alternatives'] 0m55.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 0m57.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 1m0.7s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd (python3-biopython) 1m0.8s INFO: /bin converted to /usr/bin by /usr merge 1m0.8s INFO: /lib converted to /usr/lib by /usr merge 1m0.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m0.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m0.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m0.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m0.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m0.8s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m0.8s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m0.8s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m0.8s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m0.8s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m0.8s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m0.8s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m0.8s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m0.8s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m0.8s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m0.8s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m0.8s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m0.8s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m0.8s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m0.8s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m0.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m0.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m0.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m0.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m0.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m0.8s INFO: /sbin converted to /usr/sbin by /usr merge 1m2.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', '-ac', '--ignore-obsolete'] 1m5.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', '-ac', '--ignore-obsolete'] 1m5.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m5.7s DUMP: 0.15.6 1m5.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m5.7s INFO: Running adequate version 0.15.6 now. 1m5.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'qcumber'] 1m5.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'qcumber'] 1m5.9s INFO: Running scripts pre_remove 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_exceptions'] 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/pre_remove_exceptions'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed ca-certificates ca-certificates 20210119 install ok installed coinor-cbc coinor-cbc 2.10.5+ds1-3 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.5+ds1-3 install ok installed coinor-libcgl1 coinor-libcgl1 0.60.3+repack1-2 install ok installed coinor-libclp1 coinor-libclp1 1.17.5+repack1-1 install ok installed coinor-libcoinutils3v5 coinor-libcoinutils3v5 2.11.4+repack1-1 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed docutils-common docutils-common 0.16+dfsg-4 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-2 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-lyx fonts-lyx 2.3.6-1 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed git git 1:2.30.2-1+deb11u2 install ok installed git-man git-man 1:2.30.2-1+deb11u2 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-ares2:amd64 libc-ares2 1.17.1-1+deb11u3 install ok installed libc-bin libc-bin 2.31-13+deb11u6 install ok installed libc6:amd64 libc6 2.31-13+deb11u6 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+deb11u9 install ok installed libcurl4:amd64 libcurl4 7.74.0-1.3+deb11u9 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.2+dfsg-1+deb11u1 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u3 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-angularjs libjs-angularjs 1.8.2-2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-d3-format libjs-d3-format 1:1.4.1-3 install ok installed libjs-inherits libjs-inherits 2.0.4-1 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-8+deb11u1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 3.4.3-2 install ok installed libjs-sprintf-js libjs-sprintf-js 1.1.2+ds1-2 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-3 install ok installed libjs-util libjs-util 0.10.3-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1 install ok installed libnode72:amd64 libnode72 12.22.12~dfsg-1~deb11u4 install ok installed libnotify-bin libnotify-bin 0.7.9-3 install ok installed libnotify4:amd64 libnotify4 0.7.9-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.11+dfsg-1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u4 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtk8.6:amd64 libtk8.6 8.6.11-2 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libuv1:amd64 libuv1 1.40.0-2 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2.1+deb11u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2.1+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u1 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed littler littler 0.3.12-1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mime-support mime-support 3.66 install ok installed mocha mocha 8.2.1+ds1+~cs29.4.27-3 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed node-ansi-colors node-ansi-colors 4.1.1-2 install ok installed node-ansi-regex node-ansi-regex 5.0.1-1~deb11u1 install ok installed node-ansi-styles node-ansi-styles 4.2.1-1 install ok installed node-anymatch node-anymatch 3.1.1+~2.2.2-1 install ok installed node-argparse node-argparse 2.0.1-1 install ok installed node-assert node-assert 1.5.0-1 install ok installed node-async-each node-async-each 1.0.3-1 install ok installed node-balanced-match node-balanced-match 1.0.0-1 install ok installed node-binary-extensions node-binary-extensions 2.2.0-1 install ok installed node-brace-expansion node-brace-expansion 2.0.0-1 install ok installed node-braces node-braces 3.0.2+~3.0.0-1 install ok installed node-browser-stdout node-browser-stdout 1.3.1-2 install ok installed node-camelcase node-camelcase 6.2.0-2 install ok installed node-chalk node-chalk 4.1.0-1 install ok installed node-chokidar node-chokidar 3.4.3-3 install ok installed node-cliui node-cliui 4.1.0-2 install ok installed node-clone node-clone 2.1.2-2 install ok installed node-color-convert node-color-convert 1.9.3-1 install ok installed node-color-name node-color-name 1.1.4+~1.1.1-1 install ok installed node-commander node-commander 6.2.1-2 install ok installed node-d3 node-d3 5.16.0-4 install ok installed node-d3-array node-d3-array 1.2.4-3 install ok installed node-d3-axis node-d3-axis 1.0.12-3 install ok installed node-d3-brush node-d3-brush 1.1.5-2 install ok installed node-d3-chord node-d3-chord 1.0.6-3 install ok installed node-d3-collection node-d3-collection 1.0.7-3 install ok installed node-d3-color node-d3-color 1.2.8-2 install ok installed node-d3-contour node-d3-contour 1.3.2-4 install ok installed node-d3-dispatch node-d3-dispatch 1.0.6-2 install ok installed node-d3-drag node-d3-drag 1.2.5-2 install ok installed node-d3-dsv node-d3-dsv 1.1.1-5 install ok installed node-d3-ease node-d3-ease 1.0.5-3 install ok installed node-d3-fetch node-d3-fetch 1.2.0-1 install ok installed node-d3-force node-d3-force 1.2.1-2 install ok installed node-d3-format node-d3-format 1:1.4.1-3 install ok installed node-d3-geo node-d3-geo 1.11.9-4 install ok installed node-d3-hierarchy node-d3-hierarchy 1.1.8-3 install ok installed node-d3-interpolate node-d3-interpolate 1.4.0-2 install ok installed node-d3-path node-d3-path 1.0.9-2 install ok installed node-d3-polygon node-d3-polygon 1.0.5-3 install ok installed node-d3-quadtree node-d3-quadtree 1.0.7-2 install ok installed node-d3-queue node-d3-queue 3.0.7-11 install ok installed node-d3-random node-d3-random 1.1.2-3 install ok installed node-d3-scale node-d3-scale 2.2.2-3 install ok installed node-d3-scale-chromatic node-d3-scale-chromatic 1.5.0-2 install ok installed node-d3-selection node-d3-selection 1.4.0-6 install ok installed node-d3-shape node-d3-shape 1.3.7-2 install ok installed node-d3-time node-d3-time 1.0.11-4 install ok installed node-d3-time-format node-d3-time-format 2.1.3-3 install ok installed node-d3-timer node-d3-timer 1.0.10-1 install ok installed node-d3-transition node-d3-transition 1.3.2-3 install ok installed node-d3-voronoi node-d3-voronoi 1.1.4-3 install ok installed node-d3-zoom node-d3-zoom 1.8.3-2 install ok installed node-dagre-d3-renderer node-dagre-d3-renderer 0.6.4+dfsg-3 install ok installed node-dagre-layout node-dagre-layout 0.8.8+really0.8.5+dfsg-4 install ok installed node-debug node-debug 4.3.1+~cs4.1.5-1 install ok installed node-decamelize node-decamelize 4.0.0-1 install ok installed node-defaults node-defaults 1.0.3-2 install ok installed node-diff node-diff 4.0.2~dfsg-2 install ok installed node-end-of-stream node-end-of-stream 1.4.4-1 install ok installed node-escape-string-regexp node-escape-string-regexp 4.0.0-1 install ok installed node-esprima node-esprima 4.0.1+ds+~4.0.2-2 install ok installed node-execa node-execa 4.1.0+dfsg+~cs19.3.6-5 install ok installed node-fill-range node-fill-range 7.0.1-2 install ok installed node-find-up node-find-up 5.0.0-1 install ok installed node-fs.realpath node-fs.realpath 1.0.0-1.1 install ok installed node-get-caller-file node-get-caller-file 1.0.2-1.1 install ok installed node-get-stream node-get-stream 6.0.0-1 install ok installed node-glob node-glob 7.1.6+~7.1.3-1 install ok installed node-glob-parent node-glob-parent 5.1.1+~5.1.0-2 install ok installed node-graceful-fs node-graceful-fs 4.2.4+repack-1 install ok installed node-graphlibrary node-graphlibrary 2.2.0+really2.1.8+dfsg-3 install ok installed node-growl node-growl 1.10.5-2 install ok installed node-has-flag node-has-flag 4.0.0-1 install ok installed node-he node-he 1.2.0-1 install ok installed node-iconv-lite node-iconv-lite 0.5.1-3 install ok installed node-inflight node-inflight 1.0.6-1.1 install ok installed node-inherits node-inherits 2.0.4-1 install ok installed node-invert-kv node-invert-kv 3.0.1-1 install ok installed node-is-binary-path node-is-binary-path 2.1.0-1 install ok installed node-is-buffer node-is-buffer 2.0.5-1 install ok installed node-is-extglob node-is-extglob 2.1.1-1 install ok installed node-is-glob node-is-glob 4.0.1-1 install ok installed node-is-number node-is-number 7.0.0-1.1 install ok installed node-is-plain-obj node-is-plain-obj 3.0.0-1 install ok installed node-is-stream node-is-stream 2.0.0-1 install ok installed node-isexe node-isexe 2.0.0-5 install ok installed node-js-yaml node-js-yaml 3.14.1+dfsg+~3.12.6-2 install ok installed node-kind-of node-kind-of 6.0.3+dfsg-1 install ok installed node-lcid node-lcid 3.1.1-1 install ok installed node-locate-path node-locate-path 6.0.0-1 install ok installed node-lodash node-lodash 4.17.21+dfsg+~cs8.31.173-1 install ok installed node-mem node-mem 1.1.0-1.1 install ok installed node-merge-stream node-merge-stream 2.0.0+~1.1.2-1 install ok installed node-mimic-fn node-mimic-fn 3.1.0-1 install ok installed node-minimatch node-minimatch 3.0.4+~3.0.3-1+deb11u2 install ok installed node-ms node-ms 2.1.3+~cs0.7.31-1 install ok installed node-normalize-path node-normalize-path 3.0.0-2 install ok installed node-npm-run-path node-npm-run-path 2.0.2-2 install ok installed node-object-assign node-object-assign 4.1.1-3 install ok installed node-once node-once 1.4.0-3 install ok installed node-os-locale node-os-locale 5.0.0-1 install ok installed node-p-limit node-p-limit 3.1.0+~cs2.3.0-1 install ok installed node-p-locate node-p-locate 5.0.0-1 install ok installed node-path-dirname node-path-dirname 1.0.2-1.1 install ok installed node-path-exists node-path-exists 4.0.0-2 install ok installed node-path-is-absolute node-path-is-absolute 2.0.0-1 install ok installed node-pump node-pump 3.0.0-4 install ok installed node-randombytes node-randombytes 2.1.0-1 install ok installed node-readdirp node-readdirp 3.5.0-2 install ok installed node-repeat-string node-repeat-string 1.6.1-1 install ok installed node-require-directory node-require-directory 2.1.1-1.1 install ok installed node-require-main-filename node-require-main-filename 2.0.0-1 install ok installed node-rw node-rw 1.3.3-2 install ok installed node-safe-buffer node-safe-buffer 5.2.1+~cs2.1.2-1 install ok installed node-serialize-javascript node-serialize-javascript 5.0.1-2 install ok installed node-set-blocking node-set-blocking 2.0.0-1.1 install ok installed node-set-immediate-shim node-set-immediate-shim 2.0.0-1 install ok installed node-shebang-command node-shebang-command 1.2.0-1.1 install ok installed node-shebang-regex node-shebang-regex 3.0.0-1 install ok installed node-signal-exit node-signal-exit 3.0.3-1 install ok installed node-sprintf-js node-sprintf-js 1.1.2+ds1-2 install ok installed node-string-width node-string-width 4.2.0-1 install ok installed node-strip-ansi node-strip-ansi 6.0.0-2 install ok installed node-strip-json-comments node-strip-json-comments 3.1.1-1 install ok installed node-supports-color node-supports-color 8.1.0+~7.2.0-1 install ok installed node-to-regex-range node-to-regex-range 5.0.1-2 install ok installed node-util node-util 0.10.3-4 install ok installed node-wcwidth.js node-wcwidth.js 1.0.0-1.1 install ok installed node-which node-which 2.0.2+~cs1.3.2-1 install ok installed node-which-module node-which-module 2.0.0-1 install ok installed node-wide-align node-wide-align 1.1.3-1 install ok installed node-wrap-ansi node-wrap-ansi 4.0.0-2 install ok installed node-wrappy node-wrappy 1.0.2-1.1 install ok installed node-y18n node-y18n 4.0.0-4 install ok installed node-yargs node-yargs 15.3.1+repack-2 install ok installed node-yargs-parser node-yargs-parser 18.1.3+~15.0.0-1 install ok installed nodejs nodejs 12.22.12~dfsg-1~deb11u4 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u2 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u2 install ok installed python-matplotlib-data python-matplotlib-data 3.3.4-1 install ok installed python3 python3 3.9.2-3 install ok installed python3-appdirs python3-appdirs 1.4.4-1 install ok installed python3-attr python3-attr 20.3.0-1 install ok installed python3-biopython python3-biopython 1.78+dfsg-4 install ok installed python3-certifi python3-certifi 2020.6.20-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-configargparse python3-configargparse 1.2.3-1 install ok installed python3-cycler python3-cycler 0.10.0-3 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-1+b1 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-docutils python3-docutils 0.16+dfsg-4 install ok installed python3-git python3-git 3.1.14-1 install ok installed python3-gitdb python3-gitdb 4.0.5-1 install ok installed python3-idna python3-idna 2.10-1 install ok installed python3-importlib-metadata python3-importlib-metadata 1.6.0-2 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-4 install ok installed python3-jinja2 python3-jinja2 2.11.3-1 install ok installed python3-jsonschema python3-jsonschema 3.2.0-3 install ok installed python3-jupyter-core python3-jupyter-core 4.7.1-1+deb11u1 install ok installed python3-kiwisolver python3-kiwisolver 1.3.1-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-markupsafe python3-markupsafe 1.1.1-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.3.4-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-more-itertools python3-more-itertools 4.2.0-3 install ok installed python3-nbformat python3-nbformat 5.1.2-1 install ok installed python3-numpy python3-numpy 1:1.19.5-1 install ok installed python3-pil:amd64 python3-pil 8.1.2+dfsg-0.3+deb11u1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-psutil python3-psutil 5.8.0-1 install ok installed python3-pulp python3-pulp 1.6.0+dfsg1-5 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.15.5-1+b3 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-1 install ok installed python3-reportlab python3-reportlab 3.5.59-2 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.59-2 install ok installed python3-requests python3-requests 2.25.1+dfsg-2 install ok installed python3-roman python3-roman 2.0.0-5 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-smmap python3-smmap 4.0.0-1 install ok installed python3-toposort python3-toposort 1.6-1 install ok installed python3-traitlets python3-traitlets 5.0.5-1 install ok installed python3-urllib3 python3-urllib3 1.26.5-1~exp1 install ok installed python3-wrapt python3-wrapt 1.12.1-4+b1 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3-zipp python3-zipp 1.0.0-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed qcumber qcumber 2.3.0-2 install ok installed r-base-core r-base-core 4.0.4-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.36.0-1 install ok installed r-bioc-savr r-bioc-savr 1.28.0-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.1-2 install ok installed r-cran-brio r-cran-brio 1.1.1-1 install ok installed r-cran-callr r-cran-callr 3.5.1-1 install ok installed r-cran-cli r-cran-cli 2.3.0-1 install ok installed r-cran-colorspace r-cran-colorspace 2.0-0+dfsg-1 install ok installed r-cran-conquer r-cran-conquer 1.0.2-1 install ok installed r-cran-crayon r-cran-crayon 1.4.0-1 install ok installed r-cran-desc r-cran-desc 1.2.0-3 install ok installed r-cran-diffobj r-cran-diffobj 0.3.2-1 install ok installed r-cran-digest r-cran-digest 0.6.27-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.1-1 install ok installed r-cran-evaluate r-cran-evaluate 0.14-2 install ok installed r-cran-fansi r-cran-fansi 0.4.2-1 install ok installed r-cran-farver r-cran-farver 2.0.3-1+b1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.3.3+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.4.2-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-3 install ok installed r-cran-gtable r-cran-gtable 0.3.0+dfsg-2 install ok installed r-cran-isoband r-cran-isoband 0.2.3-2 install ok installed r-cran-jsonlite r-cran-jsonlite 1.7.2+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lattice r-cran-lattice 0.20-41-1+b1 install ok installed r-cran-lifecycle r-cran-lifecycle 0.2.0-2 install ok installed r-cran-littler r-cran-littler 0.3.12-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.1-1 install ok installed r-cran-mass r-cran-mass 7.3-53.1-1 install ok installed r-cran-matrix r-cran-matrix 1.3-2-1 install ok installed r-cran-matrixmodels r-cran-matrixmodels 0.4-1-3 install ok installed r-cran-matrixstats r-cran-matrixstats 0.58.0-3 install ok installed r-cran-mgcv r-cran-mgcv 1.8-34-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.152-1 install ok installed r-cran-pillar r-cran-pillar 1.4.7-1 install ok installed r-cran-pkgbuild r-cran-pkgbuild 1.2.0-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.1-1 install ok installed r-cran-pkgload r-cran-pkgload 1.1.0-1 install ok installed r-cran-plyr r-cran-plyr 1.8.6-2 install ok installed r-cran-praise r-cran-praise 1.0.0-4 install ok installed r-cran-prettyunits r-cran-prettyunits 1.1.1-2 install ok installed r-cran-processx r-cran-processx 3.4.5-1 install ok installed r-cran-ps r-cran-ps 1.5.0-1 install ok installed r-cran-quantreg r-cran-quantreg 5.85-1 install ok installed r-cran-r6 r-cran-r6 2.5.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-3 install ok installed r-cran-rcpp r-cran-rcpp 1.0.6-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 0.10.2.1.0-1 install ok installed r-cran-rematch2 r-cran-rematch2 2.1.2-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 0.4.10-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.2-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.13-1 install ok installed r-cran-scales r-cran-scales 1.1.1-1 install ok installed r-cran-sparsem r-cran-sparsem 1.81-1 install ok installed r-cran-stringi r-cran-stringi 1.5.3-1 install ok installed r-cran-stringr r-cran-stringr 1.4.0-2 install ok installed r-cran-testthat r-cran-testthat 3.0.1-1 install ok installed r-cran-tibble r-cran-tibble 3.0.6+dfsg-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-2 install ok installed r-cran-vctrs r-cran-vctrs 0.3.6-1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-4 install ok installed r-cran-waldo r-cran-waldo 0.2.3-2 install ok installed r-cran-withr r-cran-withr 2.4.1-1 install ok installed r-cran-xml r-cran-xml 3.99-0.5-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sgml-base sgml-base 1.30 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed snakemake snakemake 5.24.1-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.5.1+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.1 install ok installed tzdata tzdata 2021a-1+deb11u10 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed x11-common x11-common 1:7.7+22 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libcairo2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-assertthat', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-rtd-theme-common', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'qcumber'] 1m19.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax git git-man libblas3 libbrotli1 libbsd0 libc-ares2 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdeflate0 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-d3-format libjs-inherits libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-sprintf-js libjs-underscore libjs-util liblapack3 liblcms2-2 libldap-2.4-2 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libnode72 libnotify-bin libnotify4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 libyaml-0-2 littler mailcap media-types mime-support mocha node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openssl perl perl-modules-5.32 python-matplotlib-data python3 python3-appdirs python3-attr python3-biopython python3-certifi python3-chardet python3-configargparse python3-cycler python3-dateutil python3-datrie python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-pil python3-pkg-resources python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-ratelimiter python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-setuptools python3-six python3-smmap python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.9 python3.9-minimal qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-assertthat r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-conquer r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-sparsem r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xml readline-common sensible-utils sgml-base shared-mime-info snakemake sphinx-rtd-theme-common ttf-bitstream-vera ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 0 newly installed, 388 to remove and 0 not upgraded. After this operation, 551 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36172 files and directories currently installed.) Removing qcumber (2.3.0-2) ... Removing snakemake (5.24.1-2) ... Removing python3-requests (2.25.1+dfsg-2) ... Removing python3-pulp (1.6.0+dfsg1-5) ... Removing coinor-cbc (2.10.5+ds1-3) ... Removing coinor-libcbc3:amd64 (2.10.5+ds1-3) ... Removing coinor-libcgl1 (0.60.3+repack1-2) ... Removing coinor-libclp1 (1.17.5+repack1-1) ... Removing coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Removing coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Removing python3-docutils (0.16+dfsg-4) ... Removing docutils-common (0.16+dfsg-4) ... Removing r-cran-quantreg (5.85-1) ... Removing r-cran-matrixmodels (0.4-1-3) ... Removing r-bioc-savr (1.28.0-1) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-conquer (1.0.2-1) ... Removing r-cran-rcpparmadillo (0.10.2.1.0-1) ... Removing r-cran-ggplot2 (3.3.3+dfsg-1) ... Removing r-cran-scales (1.1.1-1) ... Removing r-cran-rcolorbrewer (1.1-2-3) ... Removing r-cran-xml (3.99-0.5-1) ... Removing sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing libjs-bootstrap (3.4.1+dfsg-2) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing fonts-lato (2.0-2.1) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing python3-matplotlib (3.3.4-1) ... Removing python-matplotlib-data (3.3.4-1) ... Removing fonts-lyx (2.3.6-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed Removing python3-git (3.1.14-1) ... Removing git (1:2.30.2-1+deb11u2) ... Removing git-man (1:2.30.2-1+deb11u2) ... Removing python3-biopython (1.78+dfsg-4) ... Removing python3-numpy (1:1.19.5-1) ... Removing r-cran-mgcv (1.8-34-1) ... Removing node-dagre-d3-renderer (0.6.4+dfsg-3) ... Removing node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Removing node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Removing mocha (8.2.1+ds1+~cs29.4.27-3) ... Removing node-yargs (15.3.1+repack-2) ... Removing node-yargs-parser (18.1.3+~15.0.0-1) ... Removing node-y18n (4.0.0-4) ... Removing python3-reportlab (3.5.59-2) ... Removing python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u9) ... Removing python3-datrie:amd64 (0.8.2-1+b1) ... Removing node-growl (1.10.5-2) ... Removing libnotify-bin (0.7.9-3) ... Removing libnotify4:amd64 (0.7.9-3) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Removing liberror-perl (0.17029-1) ... Removing python3-yaml (5.3.1-5) ... Removing python3-nbformat (5.1.2-1) ... Removing python3-jsonschema (3.2.0-3) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-jupyter-core (4.7.1-1+deb11u1) ... Removing python3-distutils (3.9.2-1) ... Removing python3-wrapt (1.12.1-4+b1) ... Removing python3-traitlets (5.0.5-1) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing perl (5.32.1-4+deb11u2) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u2) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Removing shared-mime-info (2.0-1) ... Removing r-cran-stringr (1.4.0-2) ... Removing r-cran-stringi (1.5.3-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libjs-angularjs (1.8.2-2) ... Removing libjs-d3 (3.5.17-4) ... Removing node-d3 (5.16.0-4) ... Removing node-d3-scale (2.2.2-3) ... Removing node-d3-format (1:1.4.1-3) ... Removing libjs-d3-format (1:1.4.1-3) ... Removing node-assert (1.5.0-1) ... Removing node-util (0.10.3-4) ... Removing libjs-util (0.10.3-4) ... Removing node-glob (7.1.6+~7.1.3-1) ... Removing libjs-sphinxdoc (3.4.3-2) ... Removing libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Removing node-argparse (2.0.1-1) ... Removing node-sprintf-js (1.1.2+ds1-2) ... Removing libjs-sprintf-js (1.1.2+ds1-2) ... Removing libjs-underscore (1.9.1~dfsg-3) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing littler (0.3.12-1) ... Removing node-ansi-colors (4.1.1-2) ... Removing node-cliui (4.1.0-2) ... Removing node-wrap-ansi (4.0.0-2) ... Removing node-wide-align (1.1.3-1) ... Removing node-string-width (4.2.0-1) ... Removing node-strip-ansi (6.0.0-2) ... Removing node-ansi-regex (5.0.1-1~deb11u1) ... Removing node-chalk (4.1.0-1) ... Removing node-ansi-styles (4.2.1-1) ... Removing node-chokidar (3.4.3-3) ... Removing node-readdirp (3.5.0-2) ... Removing node-anymatch (3.1.1+~2.2.2-1) ... Removing node-async-each (1.0.3-1) ... Removing node-minimatch (3.0.4+~3.0.3-1+deb11u2) ... Removing node-brace-expansion (2.0.0-1) ... Removing node-balanced-match (1.0.0-1) ... Removing node-is-binary-path (2.1.0-1) ... Removing node-binary-extensions (2.2.0-1) ... Removing node-braces (3.0.2+~3.0.0-1) ... Removing node-browser-stdout (1.3.1-2) ... Removing node-camelcase (6.2.0-2) ... Removing node-wcwidth.js (1.0.0-1.1) ... Removing node-defaults (1.0.3-2) ... Removing node-clone (2.1.2-2) ... Removing node-color-convert (1.9.3-1) ... Removing node-color-name (1.1.4+~1.1.1-1) ... Removing node-d3-fetch (1.2.0-1) ... Removing node-d3-dsv (1.1.1-5) ... Removing node-commander (6.2.1-2) ... Removing node-d3-geo (1.11.9-4) ... Removing node-d3-axis (1.0.12-3) ... Removing node-d3-brush (1.1.5-2) ... Removing node-d3-chord (1.0.6-3) ... Removing node-d3-force (1.2.1-2) ... Removing node-d3-collection (1.0.7-3) ... Removing node-d3-zoom (1.8.3-2) ... Removing node-d3-transition (1.3.2-3) ... Removing node-d3-scale-chromatic (1.5.0-2) ... Removing node-d3-contour (1.3.2-4) ... Removing node-d3-drag (1.2.5-2) ... Removing node-d3-dispatch (1.0.6-2) ... Removing node-d3-ease (1.0.5-3) ... Removing node-d3-hierarchy (1.1.8-3) ... Removing node-d3-shape (1.3.7-2) ... Removing node-d3-path (1.0.9-2) ... Removing node-d3-polygon (1.0.5-3) ... Removing node-d3-quadtree (1.0.7-2) ... Removing node-rw (1.3.3-2) ... Removing node-d3-queue (3.0.7-11) ... Removing node-d3-random (1.1.2-3) ... Removing node-d3-selection (1.4.0-6) ... Removing node-d3-time-format (2.1.3-3) ... Removing node-d3-time (1.0.11-4) ... Removing node-d3-timer (1.0.10-1) ... Removing node-d3-voronoi (1.1.4-3) ... Removing node-debug (4.3.1+~cs4.1.5-1) ... Removing node-decamelize (4.0.0-1) ... Removing node-diff (4.0.2~dfsg-2) ... Removing node-os-locale (5.0.0-1) ... Removing node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Removing node-get-stream (6.0.0-1) ... Removing node-pump (3.0.0-4) ... Removing node-end-of-stream (1.4.4-1) ... Removing node-escape-string-regexp (4.0.0-1) ... Removing node-esprima (4.0.1+ds+~4.0.2-2) ... Removing node-fill-range (7.0.1-2) ... Removing node-find-up (5.0.0-1) ... Removing node-fs.realpath (1.0.0-1.1) ... Removing node-get-caller-file (1.0.2-1.1) ... Removing node-glob-parent (5.1.1+~5.1.0-2) ... Removing node-graceful-fs (4.2.4+repack-1) ... Removing node-supports-color (8.1.0+~7.2.0-1) ... Removing node-has-flag (4.0.0-1) ... Removing node-he (1.2.0-1) ... Removing node-iconv-lite (0.5.1-3) ... Removing node-inflight (1.0.6-1.1) ... Removing node-lcid (3.1.1-1) ... Removing node-invert-kv (3.0.1-1) ... Removing node-to-regex-range (5.0.1-2) ... Removing node-is-number (7.0.0-1.1) ... Removing node-kind-of (6.0.3+dfsg-1) ... Removing node-is-buffer (2.0.5-1) ... Removing node-is-glob (4.0.1-1) ... Removing node-is-extglob (2.1.1-1) ... Removing node-is-plain-obj (3.0.0-1) ... Removing node-is-stream (2.0.0-1) ... Removing node-which (2.0.2+~cs1.3.2-1) ... Removing node-isexe (2.0.0-5) ... Removing node-locate-path (6.0.0-1) ... Removing node-lodash (4.17.21+dfsg+~cs8.31.173-1) ... Removing node-mem (1.1.0-1.1) ... Removing node-merge-stream (2.0.0+~1.1.2-1) ... Removing node-mimic-fn (3.1.0-1) ... Removing node-ms (2.1.3+~cs0.7.31-1) ... Removing node-normalize-path (3.0.0-2) ... Removing node-npm-run-path (2.0.2-2) ... Removing node-object-assign (4.1.1-3) ... Removing node-once (1.4.0-3) ... Removing node-p-locate (5.0.0-1) ... Removing node-p-limit (3.1.0+~cs2.3.0-1) ... Removing node-path-dirname (1.0.2-1.1) ... Removing node-path-exists (4.0.0-2) ... Removing node-path-is-absolute (2.0.0-1) ... Removing node-serialize-javascript (5.0.1-2) ... Removing node-randombytes (2.1.0-1) ... Removing node-repeat-string (1.6.1-1) ... Removing node-require-directory (2.1.1-1.1) ... Removing node-require-main-filename (2.0.0-1) ... Removing node-safe-buffer (5.2.1+~cs2.1.2-1) ... Removing node-set-blocking (2.0.0-1.1) ... Removing node-set-immediate-shim (2.0.0-1) ... Removing node-shebang-command (1.2.0-1.1) ... Removing node-shebang-regex (3.0.0-1) ... Removing node-signal-exit (3.0.3-1) ... Removing node-strip-json-comments (3.1.1-1) ... Removing node-which-module (2.0.0-1) ... Removing node-wrappy (1.0.2-1.1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u2) ... Removing python3-appdirs (1.4.4-1) ... Removing python3-attr (20.3.0-1) ... Removing python3-certifi (2020.6.20-1) ... Removing python3-chardet (4.0.0-1) ... Removing python3-configargparse (1.2.3-1) ... Removing python3-cycler (0.10.0-3) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-gitdb (4.0.5-1) ... Removing python3-idna (2.10-1) ... Removing python3-importlib-metadata (1.6.0-2) ... Removing python3-ipython-genutils (0.2.0-4) ... Removing python3-jinja2 (2.11.3-1) ... Removing python3-kiwisolver (1.3.1-1+b1) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-markupsafe (1.1.1-1+b3) ... Removing python3-zipp (1.0.0-3) ... Removing python3-more-itertools (4.2.0-3) ... Removing python3-pkg-resources (52.0.0-4) ... Removing python3-psutil (5.8.0-1) ... Removing python3-pyparsing (2.4.7-1) ... Removing python3-pyrsistent:amd64 (0.15.5-1+b3) ... Removing python3-ratelimiter (1.2.0.post0-1) ... Removing python3-reportlab-accel:amd64 (3.5.59-2) ... Removing python3-roman (2.0.0-5) ... Removing python3-urllib3 (1.26.5-1~exp1) ... Removing python3-six (1.16.0-2) ... Removing python3-smmap (4.0.0-1) ... Removing python3-toposort (1.6-1) ... Removing r-bioc-biocgenerics (0.36.0-1) ... Removing r-cran-isoband (0.2.3-2) ... Removing r-cran-testthat (3.0.1-1) ... Removing r-cran-pkgload (1.1.0-1) ... Removing r-cran-waldo (0.2.3-2) ... Removing r-cran-brio (1.1.1-1) ... Removing r-cran-pkgbuild (1.2.0-1) ... Removing r-cran-callr (3.5.1-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.0-0+dfsg-1) ... Removing r-cran-rematch2 (2.1.2-2) ... Removing r-cran-tibble (3.0.6+dfsg-1) ... Removing r-cran-pillar (1.4.7-1) ... Removing r-cran-diffobj (0.3.2-1) ... Removing r-cran-vctrs (0.3.6-1) ... Removing r-cran-digest (0.6.27-1) ... Removing r-cran-ellipsis (0.3.1-1) ... Removing r-cran-evaluate (0.14-2) ... Removing r-cran-fansi (0.4.2-1) ... Removing r-cran-farver (2.0.3-1+b1) ... Removing r-cran-lifecycle (0.2.0-2) ... Removing r-cran-gridextra (2.3-3) ... Removing r-cran-gtable (0.3.0+dfsg-2) ... Removing r-cran-jsonlite (1.7.2+dfsg-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-nlme (3.1.152-1) ... Removing r-cran-magrittr (2.0.1-1) ... Removing r-cran-mass (7.3-53.1-1) ... Removing r-cran-matrixstats (0.58.0-3) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-plyr (1.8.6-2) ... Removing r-cran-praise (1.0.0-4) ... Removing r-cran-prettyunits (1.1.1-2) ... Removing r-cran-processx (3.4.5-1) ... Removing r-cran-ps (1.5.0-1) ... Removing r-cran-rlang (0.4.10-1) ... Removing r-cran-rstudioapi (0.13-1) ... Removing r-cran-sparsem (1.81-1) ... Removing r-cran-utf8 (1.1.4-2) ... Removing r-cran-viridislite (0.3.0-4) ... Removing r-cran-withr (2.4.1-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.30) ... Removing r-cran-matrix (1.3-2-1) ... Removing r-cran-rcpp (1.0.6-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing node-inherits (2.0.4-1) ... Removing libjs-inherits (2.0.4-1) ... dpkg: warning: while removing libjs-inherits, directory '/usr/share/javascript' not empty so not removed Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing media-types (4.0.0) ... Removing node-d3-array (1.2.4-3) ... Removing node-d3-interpolate (1.4.0-2) ... Removing node-d3-color (1.2.8-2) ... Removing r-cran-desc (1.2.0-3) ... Removing r-cran-cli (2.3.0-1) ... Removing r-cran-assertthat (0.2.1-2) ... Removing r-cran-crayon (1.4.0-1) ... Removing r-cran-glue (1.4.2-1) ... Removing r-cran-lattice (0.20-41-1+b1) ... Removing r-cran-littler (0.3.12-1) ... Removing r-cran-pkgkitten (0.2.1-1) ... Removing r-cran-r6 (2.5.0-1) ... Removing r-cran-rprojroot (2.0.2-1) ... Removing r-base-core (4.0.4-1) ... Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing libtk8.6:amd64 (8.6.11-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing nodejs (12.22.12~dfsg-1~deb11u4) ... Removing libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libc-ares2:amd64 (1.17.1-1+deb11u3) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u9) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u4) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libglib2.0-0:amd64 (2.66.8-1) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libicu67:amd64 (67.1-7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libnghttp2-14:amd64 (1.43.0-1) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libtcl8.6:amd64 (8.6.11+dfsg-1) ... Removing libthai-data (0.1.28-3) ... Removing libuv1:amd64 (1.40.0-2) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing readline-common (8.1-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ttf-bitstream-vera (1.10-8.1) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing unzip (6.0-26+deb11u1) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u1) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libx11-data (2:1.7.2-1+deb11u1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing openssl (1.1.1w-0+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libcairo2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-assertthat', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-rtd-theme-common', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'qcumber'] 1m19.6s INFO: Running scripts post_remove 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_remove_exceptions'] 1m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_remove_exceptions'] 1m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libcairo2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-assertthat', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-rtd-theme-common', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip'] 1m20.3s DUMP: (Reading database ... 6726 files and directories currently installed.) Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed Purging configuration files for docutils-common (0.16+dfsg-4) ... Purging configuration files for fontconfig (2.13.1-4.2) ... Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for git (1:2.30.2-1+deb11u2) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-angularjs which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-d3-format which isn't installed dpkg: warning: ignoring request to remove libjs-inherits which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-sprintf-js which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjs-util which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnode72 which isn't installed dpkg: warning: ignoring request to remove libnotify-bin which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for mailcap (3.69) ... Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed dpkg: warning: ignoring request to remove mocha which isn't installed dpkg: warning: ignoring request to remove node-ansi-colors which isn't installed dpkg: warning: ignoring request to remove node-ansi-regex which isn't installed dpkg: warning: ignoring request to remove node-ansi-styles which isn't installed dpkg: warning: ignoring request to remove node-anymatch which isn't installed dpkg: warning: ignoring request to remove node-argparse which isn't installed dpkg: warning: ignoring request to remove node-assert which isn't installed dpkg: warning: ignoring request to remove node-async-each which isn't installed dpkg: warning: ignoring request to remove node-balanced-match which isn't installed dpkg: warning: ignoring request to remove node-binary-extensions which isn't installed dpkg: warning: ignoring request to remove node-brace-expansion which isn't installed dpkg: warning: ignoring request to remove node-braces which isn't installed dpkg: warning: ignoring request to remove node-browser-stdout which isn't installed dpkg: warning: ignoring request to remove node-camelcase which isn't installed dpkg: warning: ignoring request to remove node-chalk which isn't installed dpkg: warning: ignoring request to remove node-chokidar which isn't installed dpkg: warning: ignoring request to remove node-cliui which isn't installed dpkg: warning: ignoring request to remove node-clone which isn't installed dpkg: warning: ignoring request to remove node-color-convert which isn't installed dpkg: warning: ignoring request to remove node-color-name which isn't installed dpkg: warning: ignoring request to remove node-commander which isn't installed dpkg: warning: ignoring request to remove node-d3 which isn't installed dpkg: warning: ignoring request to remove node-d3-array which isn't installed dpkg: warning: ignoring request to remove node-d3-axis which isn't installed dpkg: warning: ignoring request to remove node-d3-brush which isn't installed dpkg: warning: ignoring request to remove node-d3-chord which isn't installed dpkg: warning: ignoring request to remove node-d3-collection which isn't installed dpkg: warning: ignoring request to remove node-d3-color which isn't installed dpkg: warning: ignoring request to remove node-d3-contour which isn't installed dpkg: warning: ignoring request to remove node-d3-dispatch which isn't installed dpkg: warning: ignoring request to remove node-d3-drag which isn't installed dpkg: warning: ignoring request to remove node-d3-dsv which isn't installed dpkg: warning: ignoring request to remove node-d3-ease which isn't installed dpkg: warning: ignoring request to remove node-d3-fetch which isn't installed dpkg: warning: ignoring request to remove node-d3-force which isn't installed dpkg: warning: ignoring request to remove node-d3-format which isn't installed dpkg: warning: ignoring request to remove node-d3-geo which isn't installed dpkg: warning: ignoring request to remove node-d3-hierarchy which isn't installed dpkg: warning: ignoring request to remove node-d3-interpolate which isn't installed dpkg: warning: ignoring request to remove node-d3-path which isn't installed dpkg: warning: ignoring request to remove node-d3-polygon which isn't installed dpkg: warning: ignoring request to remove node-d3-quadtree which isn't installed dpkg: warning: ignoring request to remove node-d3-queue which isn't installed dpkg: warning: ignoring request to remove node-d3-random which isn't installed dpkg: warning: ignoring request to remove node-d3-scale which isn't installed dpkg: warning: ignoring request to remove node-d3-scale-chromatic which isn't installed dpkg: warning: ignoring request to remove node-d3-selection which isn't installed dpkg: warning: ignoring request to remove node-d3-shape which isn't installed dpkg: warning: ignoring request to remove node-d3-time which isn't installed dpkg: warning: ignoring request to remove node-d3-time-format which isn't installed dpkg: warning: ignoring request to remove node-d3-timer which isn't installed dpkg: warning: ignoring request to remove node-d3-transition which isn't installed dpkg: warning: ignoring request to remove node-d3-voronoi which isn't installed dpkg: warning: ignoring request to remove node-d3-zoom which isn't installed dpkg: warning: ignoring request to remove node-dagre-d3-renderer which isn't installed dpkg: warning: ignoring request to remove node-dagre-layout which isn't installed dpkg: warning: ignoring request to remove node-debug which isn't installed dpkg: warning: ignoring request to remove node-decamelize which isn't installed dpkg: warning: ignoring request to remove node-defaults which isn't installed dpkg: warning: ignoring request to remove node-diff which isn't installed dpkg: warning: ignoring request to remove node-end-of-stream which isn't installed dpkg: warning: ignoring request to remove node-escape-string-regexp which isn't installed dpkg: warning: ignoring request to remove node-esprima which isn't installed dpkg: warning: ignoring request to remove node-execa which isn't installed dpkg: warning: ignoring request to remove node-fill-range which isn't installed dpkg: warning: ignoring request to remove node-find-up which isn't installed dpkg: warning: ignoring request to remove node-fs.realpath which isn't installed dpkg: warning: ignoring request to remove node-get-caller-file which isn't installed dpkg: warning: ignoring request to remove node-get-stream which isn't installed dpkg: warning: ignoring request to remove node-glob which isn't installed dpkg: warning: ignoring request to remove node-glob-parent which isn't installed dpkg: warning: ignoring request to remove node-graceful-fs which isn't installed dpkg: warning: ignoring request to remove node-graphlibrary which isn't installed dpkg: warning: ignoring request to remove node-growl which isn't installed dpkg: warning: ignoring request to remove node-has-flag which isn't installed dpkg: warning: ignoring request to remove node-he which isn't installed dpkg: warning: ignoring request to remove node-iconv-lite which isn't installed dpkg: warning: ignoring request to remove node-inflight which isn't installed dpkg: warning: ignoring request to remove node-inherits which isn't installed dpkg: warning: ignoring request to remove node-invert-kv which isn't installed dpkg: warning: ignoring request to remove node-is-binary-path which isn't installed dpkg: warning: ignoring request to remove node-is-buffer which isn't installed dpkg: warning: ignoring request to remove node-is-extglob which isn't installed dpkg: warning: ignoring request to remove node-is-glob which isn't installed dpkg: warning: ignoring request to remove node-is-number which isn't installed dpkg: warning: ignoring request to remove node-is-plain-obj which isn't installed dpkg: warning: ignoring request to remove node-is-stream which isn't installed dpkg: warning: ignoring request to remove node-isexe which isn't installed dpkg: warning: ignoring request to remove node-js-yaml which isn't installed dpkg: warning: ignoring request to remove node-kind-of which isn't installed dpkg: warning: ignoring request to remove node-lcid which isn't installed dpkg: warning: ignoring request to remove node-locate-path which isn't installed dpkg: warning: ignoring request to remove node-lodash which isn't installed dpkg: warning: ignoring request to remove node-mem which isn't installed dpkg: warning: ignoring request to remove node-merge-stream which isn't installed dpkg: warning: ignoring request to remove node-mimic-fn which isn't installed dpkg: warning: ignoring request to remove node-minimatch which isn't installed dpkg: warning: ignoring request to remove node-ms which isn't installed dpkg: warning: ignoring request to remove node-normalize-path which isn't installed dpkg: warning: ignoring request to remove node-npm-run-path which isn't installed dpkg: warning: ignoring request to remove node-object-assign which isn't installed dpkg: warning: ignoring request to remove node-once which isn't installed dpkg: warning: ignoring request to remove node-os-locale which isn't installed dpkg: warning: ignoring request to remove node-p-limit which isn't installed dpkg: warning: ignoring request to remove node-p-locate which isn't installed dpkg: warning: ignoring request to remove node-path-dirname which isn't installed dpkg: warning: ignoring request to remove node-path-exists which isn't installed dpkg: warning: ignoring request to remove node-path-is-absolute which isn't installed dpkg: warning: ignoring request to remove node-pump which isn't installed dpkg: warning: ignoring request to remove node-randombytes which isn't installed dpkg: warning: ignoring request to remove node-readdirp which isn't installed dpkg: warning: ignoring request to remove node-repeat-string which isn't installed dpkg: warning: ignoring request to remove node-require-directory which isn't installed dpkg: warning: ignoring request to remove node-require-main-filename which isn't installed dpkg: warning: ignoring request to remove node-rw which isn't installed dpkg: warning: ignoring request to remove node-safe-buffer which isn't installed dpkg: warning: ignoring request to remove node-serialize-javascript which isn't installed dpkg: warning: ignoring request to remove node-set-blocking which isn't installed dpkg: warning: ignoring request to remove node-set-immediate-shim which isn't installed dpkg: warning: ignoring request to remove node-shebang-command which isn't installed dpkg: warning: ignoring request to remove node-shebang-regex which isn't installed dpkg: warning: ignoring request to remove node-signal-exit which isn't installed Purging configuration files for node-sprintf-js (1.1.2+ds1-2) ... dpkg: warning: ignoring request to remove node-string-width which isn't installed dpkg: warning: ignoring request to remove node-strip-ansi which isn't installed dpkg: warning: ignoring request to remove node-strip-json-comments which isn't installed dpkg: warning: ignoring request to remove node-supports-color which isn't installed dpkg: warning: ignoring request to remove node-to-regex-range which isn't installed dpkg: warning: ignoring request to remove node-util which isn't installed dpkg: warning: ignoring request to remove node-wcwidth.js which isn't installed dpkg: warning: ignoring request to remove node-which which isn't installed dpkg: warning: ignoring request to remove node-which-module which isn't installed dpkg: warning: ignoring request to remove node-wide-align which isn't installed dpkg: warning: ignoring request to remove node-wrap-ansi which isn't installed dpkg: warning: ignoring request to remove node-wrappy which isn't installed dpkg: warning: ignoring request to remove node-y18n which isn't installed dpkg: warning: ignoring request to remove node-yargs which isn't installed dpkg: warning: ignoring request to remove node-yargs-parser which isn't installed dpkg: warning: ignoring request to remove nodejs which isn't installed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... Purging configuration files for perl (5.32.1-4+deb11u2) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for python-matplotlib-data (3.3.4-1) ... Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed Purging configuration files for python3-jsonschema (3.2.0-3) ... dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed Purging configuration files for python3-pulp (1.6.0+dfsg1-5) ... dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for r-base-core (4.0.4-1) ... dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-savr which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-brio which isn't installed dpkg: warning: ignoring request to remove r-cran-callr which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-conquer which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-diffobj which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixmodels which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgbuild which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgload which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-processx which isn't installed dpkg: warning: ignoring request to remove r-cran-ps which isn't installed dpkg: warning: ignoring request to remove r-cran-quantreg which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which isn't installed dpkg: warning: ignoring request to remove r-cran-rematch2 which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-sparsem which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-waldo which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.30) ... Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove snakemake which isn't installed dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zip which isn't installed 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-lyx', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-ares2:amd64', 'libcairo2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-angularjs', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-biopython', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-cycler', 'python3-dateutil', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-lib2to3', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-savr', 'r-cran-assertthat', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-conquer', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-sparsem', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'r-cran-xml', 'readline-common', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-rtd-theme-common', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--purge', 'qcumber'] 1m20.4s DUMP: (Reading database ... 6670 files and directories currently installed.) Purging configuration files for qcumber (2.3.0-2) ... 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--purge', 'qcumber'] 1m20.4s INFO: Running scripts post_purge 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_purge_exceptions'] 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_purge_exceptions'] 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--purge', '--pending'] 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--purge', '--pending'] 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--remove', '--pending'] 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg', '--remove', '--pending'] 1m20.4s INFO: Running scripts post_test 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_test_exceptions'] 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'tmp/scripts/post_test_exceptions'] 1m20.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 1m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 1m21.2s DEBUG: No broken symlinks as far as we can find. 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-divert', '--list'] 1m21.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'dpkg-divert', '--list'] 1m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'clean'] 1m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo', 'apt-get', 'clean'] 1m21.3s DEBUG: Recording chroot state 1m21.7s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-mathjax, fonts-lyx, fonts-glyphicons-halflings, fonts-font-awesome, ttf-bitstream-vera, fonts-lato /usr/share/fonts/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-lyx, fonts-glyphicons-halflings, fonts-font-awesome, ttf-bitstream-vera, fonts-lato /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned /usr/share/javascript/ owned by: node-esprima, libjs-util, libjs-sprintf-js, libjs-sphinxdoc, libjs-underscore, libjs-mathjax, libjs-jquery-ui, libjs-jquery, libjs-inherits, libjs-d3-format, libjs-d3, libjs-bootstrap, libjs-angularjs, fonts-mathjax, fonts-font-awesome /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 1m21.7s INFO: PASS: Installation and purging test. 1m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/shm'] 1m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/shm'] 1m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/console'] 1m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/console'] 1m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/ptmx'] 1m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/ptmx'] 1m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/pts'] 1m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/dev/pts'] 1m22.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/proc'] 1m22.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo/proc'] 1m22.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 1m22.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpk15vu6qo'] 1m22.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpk15vu6qo 1m22.4s INFO: PASS: All tests. 1m22.4s INFO: piuparts run ends. ret=0 End: 2024-01-15 16:44:52 GMT