Start: 2024-03-10 15:06:55 GMT [bullseye] Package: ampliconnoise Version: 1.29-9 Installed-Size: 2036 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgsl25 (>= 2.6), libopenmpi3 (>= 4.0.4), mafft Recommends: openmpi-bin Description: removal of noise from 454 sequenced PCR amplicons Homepage: https://github.com/lanzen/ampliconnoise Description-md5: cd8d15fcdec00d4fc4f08c519dbff884 Tag: role::program Section: science Priority: optional Filename: pool/main/a/ampliconnoise/ampliconnoise_1.29-9_amd64.deb Size: 1106552 MD5sum: 0ffa6088603439c2b88ce28ad5af1792 SHA256: 16e35c33c78de0e16cc498722d31ed173473b63fc7fd4920a4d5b17794a0edb9 [bullseye-next] Package: ampliconnoise Version: 1.29-9 Installed-Size: 2036 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgsl25 (>= 2.6), libopenmpi3 (>= 4.0.4), mafft Recommends: openmpi-bin Description: removal of noise from 454 sequenced PCR amplicons Homepage: https://github.com/lanzen/ampliconnoise Description-md5: cd8d15fcdec00d4fc4f08c519dbff884 Tag: role::program Section: science Priority: optional Filename: pool/main/a/ampliconnoise/ampliconnoise_1.29-9_amd64.deb Size: 1106552 MD5sum: 0ffa6088603439c2b88ce28ad5af1792 SHA256: 16e35c33c78de0e16cc498722d31ed173473b63fc7fd4920a4d5b17794a0edb9 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt ampliconnoise=1.29-9 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt ampliconnoise=1.29-9 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp0bwpt5x5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp0bwpt5x5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp0bwpt5x5/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s INFO: Running scripts pre_test 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'show', '--no-all-versions', 'ampliconnoise'] 0m4.3s DUMP: Package: ampliconnoise Version: 1.29-9 Installed-Size: 2036 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgsl25 (>= 2.6), libopenmpi3 (>= 4.0.4), mafft Recommends: openmpi-bin Description-en: removal of noise from 454 sequenced PCR amplicons AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts: . Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences . Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct. Description-md5: cd8d15fcdec00d4fc4f08c519dbff884 Homepage: https://github.com/lanzen/ampliconnoise Tag: role::program Section: science Priority: optional Filename: pool/main/a/ampliconnoise/ampliconnoise_1.29-9_amd64.deb Size: 1106552 MD5sum: 0ffa6088603439c2b88ce28ad5af1792 SHA256: 16e35c33c78de0e16cc498722d31ed173473b63fc7fd4920a4d5b17794a0edb9 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'show', '--no-all-versions', 'ampliconnoise'] 0m4.3s INFO: apt-cache knows about the following packages: ampliconnoise 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy', 'ampliconnoise'] 0m4.4s DUMP: ampliconnoise: Installed: (none) Candidate: 1.29-9 Version table: 1.29-9 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy', 'ampliconnoise'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-y', 'install', 'ampliconnoise'] 0m10.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ibverbs-providers libbsd0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgdbm-compat4 libgdbm6 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.32 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 mafft ocl-icd-libopencl1 perl perl-modules-5.32 Suggested packages: gdbm-l10n gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhwloc-contrib-plugins pciutils sensible-utils opencl-icd perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: openmpi-bin blast2 libwww-perl lynx ruby netbase The following NEW packages will be installed: ampliconnoise ibverbs-providers libbsd0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgdbm-compat4 libgdbm6 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.32 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 mafft ocl-icd-libopencl1 perl perl-modules-5.32 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 26.9 MB of archives. After this operation, 125 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.141.03-1~deb11u1 [27.5 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1+deb11u1 [553 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 mafft amd64 7.475-1 [1051 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 ampliconnoise amd64 1.29-9 [1107 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.9 MB in 1s (37.5 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6672 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking mafft (7.475-1) ... Selecting previously unselected package ampliconnoise. Preparing to unpack .../37-ampliconnoise_1.29-9_amd64.deb ... Unpacking ampliconnoise (1.29-9) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libgslcblas0:amd64 (2.6+dfsg-2) ... Setting up libgsl25:amd64 (2.6+dfsg-2) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libibverbs1:amd64 (33.2-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libxnvctrl0:amd64 (470.141.03-1~deb11u1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up mafft (7.475-1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up ampliconnoise (1.29-9) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-y', 'install', 'ampliconnoise'] 0m10.9s INFO: Running scripts post_install 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_install_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_install_exceptions'] 0m10.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m11.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m11.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp0bwpt5x5 to bullseye-next 0m11.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m11.5s INFO: Running scripts pre_distupgrade 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'update'] 0m13.2s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://security.debian.org bullseye-security InRelease [48.4 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:7 http://security.debian.org bullseye-security/main amd64 Packages [269 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [174 kB] Get:9 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [15.6 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [11.6 kB] Fetched 647 kB in 1s (918 kB/s) Reading package lists... 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'update'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-yf', 'dist-upgrade'] 0m13.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-yf', 'dist-upgrade'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.0s DUMP: 8c80a9359cf8a6ea730d5fcadcf937ef - 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'show', '--no-all-versions', 'ampliconnoise'] 0m14.2s DUMP: Package: ampliconnoise Version: 1.29-9 Installed-Size: 2036 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgsl25 (>= 2.6), libopenmpi3 (>= 4.0.4), mafft Recommends: openmpi-bin Description-en: removal of noise from 454 sequenced PCR amplicons AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts: . Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences . Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct. Description-md5: cd8d15fcdec00d4fc4f08c519dbff884 Homepage: https://github.com/lanzen/ampliconnoise Tag: role::program Section: science Priority: optional Filename: pool/main/a/ampliconnoise/ampliconnoise_1.29-9_amd64.deb Size: 1106552 MD5sum: 0ffa6088603439c2b88ce28ad5af1792 SHA256: 16e35c33c78de0e16cc498722d31ed173473b63fc7fd4920a4d5b17794a0edb9 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'show', '--no-all-versions', 'ampliconnoise'] 0m14.2s INFO: apt-cache knows about the following packages: ampliconnoise 0m14.2s INFO: Running scripts pre_install 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_database-server'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_database-server'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_exceptions'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_exceptions'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_extras'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_extras'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy'] 0m14.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy', 'ampliconnoise'] 0m14.4s DUMP: ampliconnoise: Installed: 1.29-9 Candidate: 1.29-9 Version table: *** 1.29-9 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy', 'ampliconnoise'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-y', 'install', 'ampliconnoise'] 0m14.8s DUMP: Reading package lists... Building dependency tree... Reading state information... ampliconnoise is already the newest version (1.29-9). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-y', 'install', 'ampliconnoise'] 0m14.8s INFO: Running scripts post_install 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_install_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_install_exceptions'] 0m14.8s INFO: Running scripts post_distupgrade 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m15.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m15.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m16.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m16.2s INFO: Running scripts pre_install 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_database-server'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_database-server'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_exceptions'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_exceptions'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_extras'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_extras'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy'] 0m16.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy', 'ampliconnoise'] 0m16.4s DUMP: ampliconnoise: Installed: 1.29-9 Candidate: 1.29-9 Version table: *** 1.29-9 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-cache', 'policy', 'ampliconnoise'] 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-y', 'install', 'ampliconnoise=1.29-9'] 0m16.8s DUMP: Reading package lists... Building dependency tree... Reading state information... ampliconnoise is already the newest version (1.29-9). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', '-y', 'install', 'ampliconnoise=1.29-9'] 0m16.8s INFO: Running scripts post_install 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_install_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_install_exceptions'] 0m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m17.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m17.6s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m17.7s INFO: /bin converted to /usr/bin by /usr merge 0m17.7s INFO: /lib converted to /usr/lib by /usr merge 0m17.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m17.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m17.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m17.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m17.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m17.7s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m17.7s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m17.7s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m17.7s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m17.7s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m17.7s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m17.7s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m17.7s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m17.7s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m17.7s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m17.7s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m17.7s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m17.7s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m17.7s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m17.7s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m17.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m17.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m17.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m17.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m17.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m17.7s INFO: /sbin converted to /usr/sbin by /usr merge 0m18.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', '-ac', '--ignore-obsolete'] 0m20.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', '-ac', '--ignore-obsolete'] 0m20.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.2s DUMP: 0.15.6 0m20.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.2s INFO: Running adequate version 0.15.6 now. 0m20.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'ampliconnoise'] 0m20.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'ampliconnoise'] 0m20.5s INFO: Running scripts pre_remove 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_exceptions'] 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/pre_remove_exceptions'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.2s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed ampliconnoise ampliconnoise 1.29-9 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 33.2-1 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libfabric1 libfabric1 1.11.0-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgsl25:amd64 libgsl25 2.6+dfsg-2 install ok installed libgslcblas0:amd64 libgslcblas0 2.6+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.4.1+dfsg-1 install ok installed libhwloc15:amd64 libhwloc15 2.4.1+dfsg-1 install ok installed libibverbs1:amd64 libibverbs1 33.2-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.0-10 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpmix2:amd64 libpmix2 4.0.0-4.1+deb11u1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed librdmacm1:amd64 librdmacm1 33.2-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libucx0:amd64 libucx0 1.10.1~rc1+really.1.10.0-1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.141.03-1~deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mafft mafft 7.475-1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.32', 'ampliconnoise'] 0m24.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ampliconnoise ibverbs-providers libbsd0 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgdbm-compat4 libgdbm6 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libmd0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.32 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 mafft ocl-icd-libopencl1 perl perl-modules-5.32 0 upgraded, 0 newly installed, 38 to remove and 0 not upgraded. After this operation, 125 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9595 files and directories currently installed.) Removing ampliconnoise (1.29-9) ... Removing libopenmpi3:amd64 (4.1.0-10) ... Removing libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Removing libfabric1 (1.11.0-2) ... Removing ibverbs-providers:amd64 (33.2-1) ... Removing libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Removing libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Removing libxnvctrl0:amd64 (470.141.03-1~deb11u1) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing mafft (7.475-1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgsl25:amd64 (2.6+dfsg-2) ... Removing libgslcblas0:amd64 (2.6+dfsg-2) ... Removing libhwloc15:amd64 (2.4.1+dfsg-1) ... Removing librdmacm1:amd64 (33.2-1) ... Removing libibverbs1:amd64 (33.2-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.185-1) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.32', 'ampliconnoise'] 0m24.2s INFO: Running scripts post_remove 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_remove_exceptions'] 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_remove_exceptions'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.32'] 0m24.3s DUMP: (Reading database ... 6694 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (33.2-1) ... dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgsl25 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libbsd0:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.32'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--purge', 'ampliconnoise'] 0m24.3s DUMP: dpkg: warning: ignoring request to remove ampliconnoise which isn't installed 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--purge', 'ampliconnoise'] 0m24.3s INFO: Running scripts post_purge 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_purge_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_purge_exceptions'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--purge', '--pending'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--purge', '--pending'] 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--remove', '--pending'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg', '--remove', '--pending'] 0m24.3s INFO: Running scripts post_test 0m24.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_test_exceptions'] 0m24.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'tmp/scripts/post_test_exceptions'] 0m24.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m24.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg-divert', '--list'] 0m24.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'dpkg-divert', '--list'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'clean'] 0m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5', 'apt-get', 'clean'] 0m24.9s DEBUG: Recording chroot state 0m26.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/shm'] 0m26.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/shm'] 0m26.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/console'] 0m26.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/console'] 0m26.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/ptmx'] 0m26.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/ptmx'] 0m26.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/pts'] 0m26.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/dev/pts'] 0m26.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/proc'] 0m26.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5/proc'] 0m26.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m26.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0bwpt5x5'] 0m26.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp0bwpt5x5 0m26.5s INFO: PASS: Upgrading between Debian distributions. 0m26.5s INFO: PASS: All tests. 0m26.5s INFO: piuparts run ends. ret=0 End: 2024-03-10 15:07:22 GMT