Start: 2024-10-06 18:20:48 GMT [bullseye] Package: density-fitness Version: 1.0.0-2 Installed-Size: 375 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.14), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo1 (>= 1.0.2), libstdc++6 (>= 9), libzeep5 (>= 5.0.2) Description: Calculates per-residue electron density scores Homepage: https://github.com/PDB-REDO/density-fitness Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.0.0-2_amd64.deb Size: 104108 MD5sum: a827ba120756667b69c669c554b52475 SHA256: 09a12429144642f0e0f68e5768ec20e40b58234560b88bd86113710ac43ace30 [bullseye-next] Package: density-fitness Version: 1.0.0-2 Installed-Size: 375 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.14), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo1 (>= 1.0.2), libstdc++6 (>= 9), libzeep5 (>= 5.0.2) Description: Calculates per-residue electron density scores Homepage: https://github.com/PDB-REDO/density-fitness Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.0.0-2_amd64.deb Size: 104108 MD5sum: a827ba120756667b69c669c554b52475 SHA256: 09a12429144642f0e0f68e5768ec20e40b58234560b88bd86113710ac43ace30 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt density-fitness=1.0.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt density-fitness=1.0.0-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2fuc7bm6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2fuc7bm6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2fuc7bm6/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'update'] 0m1.2s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'update'] 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-yf', 'dist-upgrade'] 0m1.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-yf', 'dist-upgrade'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s DUMP: f58ca9ba0b3223edf5b7797c101a5448 - 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s INFO: Running scripts post_setup 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_dummy_users'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_dummy_users'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_forbid_home'] 0m2.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_forbid_home'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_minimize'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u11 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u11 install ok installed libc6:amd64 libc6 2.31-13+deb11u11 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m2.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m3.2s INFO: Running scripts is_testable 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s INFO: Running scripts pre_test 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_test_root_password'] 0m3.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_test_root_password'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m3.6s DUMP: Package: density-fitness Version: 1.0.0-2 Installed-Size: 375 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.14), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo1 (>= 1.0.2), libstdc++6 (>= 9), libzeep5 (>= 5.0.2) Description-en: Calculates per-residue electron density scores The program density-fitness calculates electron density metrics, for main- (includes C? atom) and side-chain atoms of individual residues. . For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data. . This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients. Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Homepage: https://github.com/PDB-REDO/density-fitness Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.0.0-2_amd64.deb Size: 104108 MD5sum: a827ba120756667b69c669c554b52475 SHA256: 09a12429144642f0e0f68e5768ec20e40b58234560b88bd86113710ac43ace30 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m3.6s INFO: apt-cache knows about the following packages: density-fitness 0m3.6s INFO: Running scripts pre_install 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy'] 0m3.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy', 'density-fitness'] 0m3.7s DUMP: density-fitness: Installed: (none) Candidate: 1.0.0-2 Version table: 1.0.0-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy', 'density-fitness'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-y', 'install', 'density-fitness'] 0m10.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ibverbs-providers libboost-iostreams1.74.0 libboost-program-options1.74.0 libbsd0 libccp4-data libccp4c0 libcifpp1 libclipper2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libmd0 libmmdb2-0 libnewuoa0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpdb-redo1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep5 ocl-icd-libopencl1 sfftw2 Suggested packages: gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhwloc-contrib-plugins pciutils opencl-icd mpi-defaults-bin sfftw-dev The following NEW packages will be installed: density-fitness ibverbs-providers libboost-iostreams1.74.0 libboost-program-options1.74.0 libbsd0 libccp4-data libccp4c0 libcifpp1 libclipper2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libmd0 libmmdb2-0 libnewuoa0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpdb-redo1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep5 ocl-icd-libopencl1 sfftw2 0 upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 25.3 MB of archives. After this operation, 84.9 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-9 [264 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libcifpp1 amd64 1.0.1-3 [1447 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libccp4-data all 6.5.1-5 [61.6 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libccp4c0 amd64 6.5.1-5 [88.3 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libmmdb2-0 amd64 2.0.5-1 [333 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.239.06-1 [27.5 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1+deb11u1 [553 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 sfftw2 amd64 2.1.5-4.2+b1 [235 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libclipper2 amd64 2.1.20201109-1 [1156 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libnewuoa0 amd64 0.1.1-2 [18.4 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libzeep5 amd64 5.0.2-3 [668 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libpdb-redo1 amd64 1.0.2-2 [3214 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 density-fitness amd64 1.0.0-2 [104 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.3 MB in 2s (11.3 MB/s) Selecting previously unselected package libboost-iostreams1.74.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../00-libboost-iostreams1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-iostreams1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-program-options1.74.0:amd64. Preparing to unpack .../01-libboost-program-options1.74.0_1.74.0-9_amd64.deb ... Unpacking libboost-program-options1.74.0:amd64 (1.74.0-9) ... Selecting previously unselected package libcifpp1. Preparing to unpack .../02-libcifpp1_1.0.1-3_amd64.deb ... Unpacking libcifpp1 (1.0.1-3) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../03-libccp4-data_6.5.1-5_all.deb ... Unpacking libccp4-data (6.5.1-5) ... Selecting previously unselected package libccp4c0:amd64. Preparing to unpack .../04-libccp4c0_6.5.1-5_amd64.deb ... Unpacking libccp4c0:amd64 (6.5.1-5) ... Selecting previously unselected package libmmdb2-0:amd64. Preparing to unpack .../05-libmmdb2-0_2.0.5-1_amd64.deb ... Unpacking libmmdb2-0:amd64 (2.0.5-1) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../06-libevent-core-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../07-libevent-pthreads-2.1-7_2.1.12-stable-1_amd64.deb ... 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Preparing to unpack .../36-libclipper2_2.1.20201109-1_amd64.deb ... Unpacking libclipper2:amd64 (2.1.20201109-1) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../37-libgslcblas0_2.6+dfsg-2_amd64.deb ... Unpacking libgslcblas0:amd64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:amd64. Preparing to unpack .../38-libgsl25_2.6+dfsg-2_amd64.deb ... Unpacking libgsl25:amd64 (2.6+dfsg-2) ... Selecting previously unselected package libnewuoa0. Preparing to unpack .../39-libnewuoa0_0.1.1-2_amd64.deb ... Unpacking libnewuoa0 (0.1.1-2) ... Selecting previously unselected package libzeep5. Preparing to unpack .../40-libzeep5_5.0.2-3_amd64.deb ... Unpacking libzeep5 (5.0.2-3) ... Selecting previously unselected package libpdb-redo1. Preparing to unpack .../41-libpdb-redo1_1.0.2-2_amd64.deb ... Unpacking libpdb-redo1 (1.0.2-2) ... Selecting previously unselected package density-fitness. Preparing to unpack .../42-density-fitness_1.0.0-2_amd64.deb ... Unpacking density-fitness (1.0.0-2) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libgslcblas0:amd64 (2.6+dfsg-2) ... Setting up libmmdb2-0:amd64 (2.0.5-1) ... Setting up libgsl25:amd64 (2.6+dfsg-2) ... Setting up libboost-iostreams1.74.0:amd64 (1.74.0-9) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0-9) ... Setting up libccp4-data (6.5.1-5) ... Setting up libnewuoa0 (0.1.1-2) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libzeep5 (5.0.2-3) ... Setting up libccp4c0:amd64 (6.5.1-5) ... Setting up libcifpp1 (1.0.1-3) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libibverbs1:amd64 (33.2-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libxnvctrl0:amd64 (470.239.06-1) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up sfftw2 (2.1.5-4.2+b1) ... Setting up libclipper2:amd64 (2.1.20201109-1) ... Setting up libpdb-redo1 (1.0.2-2) ... Setting up density-fitness (1.0.0-2) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-y', 'install', 'density-fitness'] 0m10.2s INFO: Running scripts post_install 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_install_exceptions'] 0m10.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m10.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp2fuc7bm6 to bullseye-next 0m10.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m10.8s INFO: Running scripts pre_distupgrade 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_exceptions'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'update'] 0m12.2s DUMP: Get:1 http://security.debian.org bullseye-security InRelease [27.2 kB] Hit:2 http://deb.debian.org/debian bullseye InRelease Get:3 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://security.debian.org bullseye-security/main amd64 Packages [300 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:7 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [193 kB] Fetched 649 kB in 1s (842 kB/s) Reading package lists... 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'update'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-yf', 'dist-upgrade'] 0m13.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: e2fsprogs libcom-err2 libext2fs2 libgnutls30 libss2 libsystemd0 libudev1 libxml2 logsave 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3677 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://security.debian.org bullseye-security/main amd64 libsystemd0 amd64 247.3-7+deb11u6 [377 kB] Get:2 http://security.debian.org bullseye-security/main amd64 logsave amd64 1.46.2-2+deb11u1 [75.0 kB] Get:3 http://security.debian.org bullseye-security/main amd64 libext2fs2 amd64 1.46.2-2+deb11u1 [257 kB] Get:4 http://security.debian.org bullseye-security/main amd64 e2fsprogs amd64 1.46.2-2+deb11u1 [614 kB] Get:5 http://security.debian.org bullseye-security/main amd64 libcom-err2 amd64 1.46.2-2+deb11u1 [74.3 kB] Get:6 http://security.debian.org bullseye-security/main amd64 libgnutls30 amd64 3.7.1-5+deb11u6 [1340 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libudev1 amd64 247.3-7+deb11u6 [169 kB] Get:8 http://security.debian.org bullseye-security/main amd64 libss2 amd64 1.46.2-2+deb11u1 [78.9 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u5 [693 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3677 kB in 0s (47.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Preparing to unpack .../libsystemd0_247.3-7+deb11u6_amd64.deb ... Unpacking libsystemd0:amd64 (247.3-7+deb11u6) over (247.3-7+deb11u5) ... Setting up libsystemd0:amd64 (247.3-7+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Preparing to unpack .../logsave_1.46.2-2+deb11u1_amd64.deb ... Unpacking logsave (1.46.2-2+deb11u1) over (1.46.2-2) ... Preparing to unpack .../libext2fs2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Setting up libext2fs2:amd64 (1.46.2-2+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.2-2+deb11u1_amd64.deb ... Unpacking e2fsprogs (1.46.2-2+deb11u1) over (1.46.2-2) ... Preparing to unpack .../libcom-err2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Setting up libcom-err2:amd64 (1.46.2-2+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u6_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u6) over (3.7.1-5+deb11u5) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Preparing to unpack .../libudev1_247.3-7+deb11u6_amd64.deb ... Unpacking libudev1:amd64 (247.3-7+deb11u6) over (247.3-7+deb11u5) ... Setting up libudev1:amd64 (247.3-7+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Preparing to unpack .../libss2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libss2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Preparing to unpack .../libxml2_2.9.10+dfsg-6.7+deb11u5_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u5) over (2.9.10+dfsg-6.7+deb11u4) ... Setting up libss2:amd64 (1.46.2-2+deb11u1) ... Setting up logsave (1.46.2-2+deb11u1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u5) ... Setting up e2fsprogs (1.46.2-2+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-yf', 'dist-upgrade'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.0s DUMP: 3d1e1d245f1c7e7c047f035c6e9a747b - 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m14.2s DUMP: Package: density-fitness Version: 1.0.0-2 Installed-Size: 375 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.14), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.0), libpdb-redo1 (>= 1.0.2), libstdc++6 (>= 9), libzeep5 (>= 5.0.2) Description-en: Calculates per-residue electron density scores The program density-fitness calculates electron density metrics, for main- (includes C? atom) and side-chain atoms of individual residues. . For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data. . This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients. Description-md5: a0d73a3885bbe1e21b3bb9575d5b6f5c Homepage: https://github.com/PDB-REDO/density-fitness Section: science Priority: optional Filename: pool/main/d/density-fitness/density-fitness_1.0.0-2_amd64.deb Size: 104108 MD5sum: a827ba120756667b69c669c554b52475 SHA256: 09a12429144642f0e0f68e5768ec20e40b58234560b88bd86113710ac43ace30 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'show', '--no-all-versions', 'density-fitness'] 0m14.2s INFO: apt-cache knows about the following packages: density-fitness 0m14.2s INFO: Running scripts pre_install 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_database-server'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_database-server'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_exceptions'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_exceptions'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_extras'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_extras'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy'] 0m14.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy', 'density-fitness'] 0m14.4s DUMP: density-fitness: Installed: 1.0.0-2 Candidate: 1.0.0-2 Version table: *** 1.0.0-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy', 'density-fitness'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-y', 'install', 'density-fitness'] 0m14.7s DUMP: Reading package lists... Building dependency tree... Reading state information... density-fitness is already the newest version (1.0.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-y', 'install', 'density-fitness'] 0m14.7s INFO: Running scripts post_install 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_install_exceptions'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_install_exceptions'] 0m14.7s INFO: Running scripts post_distupgrade 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_exceptions'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_distupgrade_zz_backports'] 0m14.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m15.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m15.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m15.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m15.4s INFO: Running scripts pre_install 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_database-server'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_database-server'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_exceptions'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_exceptions'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy'] 0m15.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy', 'density-fitness'] 0m15.6s DUMP: density-fitness: Installed: 1.0.0-2 Candidate: 1.0.0-2 Version table: *** 1.0.0-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-cache', 'policy', 'density-fitness'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-y', 'install', 'density-fitness=1.0.0-2'] 0m16.1s DUMP: Reading package lists... Building dependency tree... Reading state information... density-fitness is already the newest version (1.0.0-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', '-y', 'install', 'density-fitness=1.0.0-2'] 0m16.1s INFO: Running scripts post_install 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m16.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m16.8s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m16.8s INFO: /bin converted to /usr/bin by /usr merge 0m16.8s INFO: /lib converted to /usr/lib by /usr merge 0m16.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m16.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m16.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m16.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m16.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m16.8s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m16.8s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m16.8s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m16.8s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m16.8s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m16.8s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m16.8s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m16.8s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m16.8s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m16.8s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m16.8s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m16.9s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m16.9s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m16.9s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m16.9s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m16.9s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m16.9s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m16.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m16.9s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m16.9s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m16.9s INFO: /sbin converted to /usr/sbin by /usr merge 0m17.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', '-ac', '--ignore-obsolete'] 0m18.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', '-ac', '--ignore-obsolete'] 0m18.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.1s DUMP: 0.15.6 0m18.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.1s INFO: Running adequate version 0.15.6 now. 0m18.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'density-fitness'] 0m18.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'density-fitness'] 0m18.2s INFO: Running scripts pre_remove 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_exceptions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/pre_remove_exceptions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.9s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u11 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed density-fitness density-fitness 1.0.0-2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed ibverbs-providers:amd64 ibverbs-providers 33.2-1 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libboost-iostreams1.74.0:amd64 libboost-iostreams1.74.0 1.74.0-9 install ok installed libboost-program-options1.74.0:amd64 libboost-program-options1.74.0 1.74.0-9 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u11 install ok installed libc6:amd64 libc6 2.31-13+deb11u11 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libccp4-data libccp4-data 6.5.1-5 install ok installed libccp4c0:amd64 libccp4c0 6.5.1-5 install ok installed libcifpp1 libcifpp1 1.0.1-3 install ok installed libclipper2:amd64 libclipper2 2.1.20201109-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2+deb11u1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libevent-core-2.1-7:amd64 libevent-core-2.1-7 2.1.12-stable-1 install ok installed libevent-pthreads-2.1-7:amd64 libevent-pthreads-2.1-7 2.1.12-stable-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2+deb11u1 install ok installed libfabric1 libfabric1 1.11.0-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgsl25:amd64 libgsl25 2.6+dfsg-2 install ok installed libgslcblas0:amd64 libgslcblas0 2.6+dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.4.1+dfsg-1 install ok installed libhwloc15:amd64 libhwloc15 2.4.1+dfsg-1 install ok installed libibverbs1:amd64 libibverbs1 33.2-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmmdb2-0:amd64 libmmdb2-0 2.0.5-1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnewuoa0 libnewuoa0 0.1.1-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.12-1+b1 install ok installed libopenmpi3:amd64 libopenmpi3 4.1.0-10 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.16-1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpdb-redo1 libpdb-redo1 1.0.2-2 install ok installed libpmix2:amd64 libpmix2 4.0.0-4.1+deb11u1 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.1 install ok installed libpsm2-2 libpsm2-2 11.2.185-1 install ok installed librdmacm1:amd64 librdmacm1 33.2-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2+deb11u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u6 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libucx0:amd64 libucx0 1.10.1~rc1+really.1.10.0-1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u6 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u5 install ok installed libxnvctrl0:amd64 libxnvctrl0 470.239.06-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzeep5 libzeep5 5.0.2-3 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2+deb11u1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.14-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sfftw2 sfftw2 2.1.5-4.2+b1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbsd0:amd64', 'libccp4-data', 'libccp4c0:amd64', 'libcifpp1', 'libclipper2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libmmdb2-0:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpdb-redo1', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libzeep5', 'ocl-icd-libopencl1:amd64', 'sfftw2', 'density-fitness'] 0m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: density-fitness ibverbs-providers libboost-iostreams1.74.0 libboost-program-options1.74.0 libbsd0 libccp4-data libccp4c0 libcifpp1 libclipper2 libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libmd0 libmmdb2-0 libnewuoa0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpdb-redo1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libucx0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep5 ocl-icd-libopencl1 sfftw2 0 upgraded, 0 newly installed, 43 to remove and 0 not upgraded. After this operation, 84.9 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7556 files and directories currently installed.) Removing density-fitness (1.0.0-2) ... Removing libpdb-redo1 (1.0.2-2) ... Removing libclipper2:amd64 (2.1.20201109-1) ... Removing sfftw2 (2.1.5-4.2+b1) ... Removing libopenmpi3:amd64 (4.1.0-10) ... Removing libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Removing libfabric1 (1.11.0-2) ... Removing ibverbs-providers:amd64 (33.2-1) ... Removing libcifpp1 (1.0.1-3) ... Removing libboost-iostreams1.74.0:amd64 (1.74.0-9) ... Removing libboost-program-options1.74.0:amd64 (1.74.0-9) ... Removing libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Removing libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Removing libxnvctrl0:amd64 (470.239.06-1) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libccp4c0:amd64 (6.5.1-5) ... Removing libccp4-data (6.5.1-5) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Removing libgsl25:amd64 (2.6+dfsg-2) ... Removing libgslcblas0:amd64 (2.6+dfsg-2) ... Removing libhwloc15:amd64 (2.4.1+dfsg-1) ... Removing librdmacm1:amd64 (33.2-1) ... Removing libibverbs1:amd64 (33.2-1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u5) ... Removing libicu67:amd64 (67.1-7) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libmmdb2-0:amd64 (2.0.5-1) ... Removing libnewuoa0 (0.1.1-2) ... Removing libnl-route-3-200:amd64 (3.4.0-1+b1) ... Removing libnl-3-200:amd64 (3.4.0-1+b1) ... Removing libpsm2-2 (11.2.185-1) ... Removing libnuma1:amd64 (2.0.12-1+b1) ... Removing libpciaccess0:amd64 (0.16-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libzeep5 (5.0.2-3) ... Removing ocl-icd-libopencl1:amd64 (2.2.14-2) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'remove', 'ibverbs-providers:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbsd0:amd64', 'libccp4-data', 'libccp4c0:amd64', 'libcifpp1', 'libclipper2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libmmdb2-0:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpdb-redo1', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libzeep5', 'ocl-icd-libopencl1:amd64', 'sfftw2', 'density-fitness'] 0m21.9s INFO: Running scripts post_remove 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_remove_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_remove_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbsd0:amd64', 'libccp4-data', 'libccp4c0:amd64', 'libcifpp1', 'libclipper2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libmmdb2-0:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpdb-redo1', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libzeep5', 'ocl-icd-libopencl1:amd64', 'sfftw2'] 0m22.0s DUMP: (Reading database ... 6695 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (33.2-1) ... dpkg: warning: ignoring request to remove libboost-iostreams1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.74.0 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libccp4-data which isn't installed dpkg: warning: ignoring request to remove libccp4c0 which isn't installed Purging configuration files for libcifpp1 (1.0.1-3) ... dpkg: warning: ignoring request to remove libclipper2 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libgsl25 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmmdb2-0 which isn't installed dpkg: warning: ignoring request to remove libnewuoa0 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpdb-redo1 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.1) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libzeep5 which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed dpkg: warning: ignoring request to remove sfftw2 which isn't installed 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--purge', 'ibverbs-providers:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-program-options1.74.0:amd64', 'libbsd0:amd64', 'libccp4-data', 'libccp4c0:amd64', 'libcifpp1', 'libclipper2:amd64', 'libevent-core-2.1-7:amd64', 'libevent-pthreads-2.1-7:amd64', 'libfabric1', 'libgsl25:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libmd0:amd64', 'libmmdb2-0:amd64', 'libnewuoa0', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libpdb-redo1', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'librdmacm1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libzeep5', 'ocl-icd-libopencl1:amd64', 'sfftw2'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--purge', 'density-fitness'] 0m22.1s DUMP: dpkg: warning: ignoring request to remove density-fitness which isn't installed 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--purge', 'density-fitness'] 0m22.1s INFO: Running scripts post_purge 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_purge_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_purge_exceptions'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--purge', '--pending'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--purge', '--pending'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--remove', '--pending'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg', '--remove', '--pending'] 0m22.1s INFO: Running scripts post_test 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_test_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'tmp/scripts/post_test_exceptions'] 0m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m22.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg-divert', '--list'] 0m22.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'dpkg-divert', '--list'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'clean'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6', 'apt-get', 'clean'] 0m22.7s DEBUG: Recording chroot state 0m23.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/shm'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/shm'] 0m23.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/console'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/console'] 0m23.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/ptmx'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/ptmx'] 0m23.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/pts'] 0m23.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/dev/pts'] 0m23.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/proc'] 0m24.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6/proc'] 0m24.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m24.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2fuc7bm6'] 0m24.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2fuc7bm6 0m24.1s INFO: PASS: Upgrading between Debian distributions. 0m24.1s INFO: PASS: All tests. 0m24.1s INFO: piuparts run ends. ret=0 End: 2024-10-06 18:21:13 GMT