Start: 2024-03-12 19:03:07 GMT [bullseye] Package: embassy-domalign Version: 0.1.660-4 Installed-Size: 617 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (>= 6.6.0+dfsg), libc6 (>= 2.4), libx11-6, emboss-lib (<< 6.6.1~) Recommends: emboss Suggests: embassy Description: Extra EMBOSS commands for protein domain alignment Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Description-md5: 4149429333c4c57628815096efc54167 Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, suite::TODO, use::analysing, use::comparing, use::editing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/e/embassy-domalign/embassy-domalign_0.1.660-4_amd64.deb Size: 68112 MD5sum: e9c77a6514c8e57b1321691677e7aaaf SHA256: ebefa10e79c35ae1efa00a999c1f0fe0125e7d110f27630d53b74813c7c5b6f2 [bullseye-next] Package: embassy-domalign Version: 0.1.660-4 Installed-Size: 617 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (>= 6.6.0+dfsg), libc6 (>= 2.4), libx11-6, emboss-lib (<< 6.6.1~) Recommends: emboss Suggests: embassy Description: Extra EMBOSS commands for protein domain alignment Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Description-md5: 4149429333c4c57628815096efc54167 Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, suite::TODO, use::analysing, use::comparing, use::editing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/e/embassy-domalign/embassy-domalign_0.1.660-4_amd64.deb Size: 68112 MD5sum: e9c77a6514c8e57b1321691677e7aaaf SHA256: ebefa10e79c35ae1efa00a999c1f0fe0125e7d110f27630d53b74813c7c5b6f2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt embassy-domalign=0.1.660-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt embassy-domalign=0.1.660-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2yiw9tw7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2yiw9tw7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/proc'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/proc'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/pts'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/pts'] 0m0.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/ptmx'] 0m0.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/ptmx'] 0m0.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/console'] 0m0.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/console'] 0m0.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/shm'] 0m0.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/shm'] 0m0.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2yiw9tw7/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'show', '--no-all-versions', 'embassy-domalign'] 0m4.3s DUMP: Package: embassy-domalign Version: 0.1.660-4 Installed-Size: 617 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (>= 6.6.0+dfsg), libc6 (>= 2.4), libx11-6, emboss-lib (<< 6.6.1~) Recommends: emboss Suggests: embassy Description-en: Extra EMBOSS commands for protein domain alignment The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. . Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)). Description-md5: 4149429333c4c57628815096efc54167 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, suite::TODO, use::analysing, use::comparing, use::editing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/e/embassy-domalign/embassy-domalign_0.1.660-4_amd64.deb Size: 68112 MD5sum: e9c77a6514c8e57b1321691677e7aaaf SHA256: ebefa10e79c35ae1efa00a999c1f0fe0125e7d110f27630d53b74813c7c5b6f2 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'show', '--no-all-versions', 'embassy-domalign'] 0m4.3s INFO: apt-cache knows about the following packages: embassy-domalign 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy', 'embassy-domalign'] 0m4.5s DUMP: embassy-domalign: Installed: (none) Candidate: 0.1.660-4 Version table: 0.1.660-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy', 'embassy-domalign'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-y', 'install', 'embassy-domalign'] 0m9.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: emboss-lib fontconfig-config fonts-dejavu-core libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgd3 libhpdf-2.3.0 libjbig0 libjpeg62-turbo libldap-2.4-2 libmariadb3 libmd0 libpng16-16 libpq5 libsasl2-2 libsasl2-modules-db libtiff5 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 mariadb-common mysql-common sensible-utils ucf Suggested packages: embassy libgd-tools Recommended packages: emboss libldap-common libsasl2-modules The following NEW packages will be installed: embassy-domalign emboss-lib fontconfig-config fonts-dejavu-core libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgd3 libhpdf-2.3.0 libjbig0 libjpeg62-turbo libldap-2.4-2 libmariadb3 libmd0 libpng16-16 libpq5 libsasl2-2 libsasl2-modules-db libtiff5 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 mariadb-common mysql-common sensible-utils ucf 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 9344 kB of archives. After this operation, 34.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b1 [349 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 mysql-common all 5.8+1.0.7 [7464 B] Get:26 http://deb.debian.org/debian bullseye/main amd64 mariadb-common all 1:10.5.23-0+deb11u1 [37.2 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libmariadb3 amd64 1:10.5.23-0+deb11u1 [176 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.13-0+deb11u1 [182 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 emboss-lib amd64 6.6.0+dfsg-9 [2866 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 embassy-domalign amd64 0.1.660-4 [68.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9344 kB in 1s (13.5 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6672 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package ucf. Preparing to unpack .../01-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../02-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../03-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../04-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../05-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../06-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../07-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../08-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../09-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../10-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../11-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../12-libwebp6_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../13-libtiff5_4.2.0-1+deb11u5_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u5) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../14-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../15-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../16-libbsd0_0.11.3-1+deb11u1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../17-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../18-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../19-libx11-data_2%3a1.7.2-1+deb11u2_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../20-libx11-6_2%3a1.7.2-1+deb11u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../21-libxpm4_1%3a3.5.12-1.1+deb11u1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../22-libgd3_2.3.0-2_amd64.deb ... Unpacking libgd3:amd64 (2.3.0-2) ... Selecting previously unselected package libhpdf-2.3.0:amd64. Preparing to unpack .../23-libhpdf-2.3.0_2.3.0+dfsg-1+b1_amd64.deb ... Unpacking libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../24-mysql-common_5.8+1.0.7_all.deb ... Unpacking mysql-common (5.8+1.0.7) ... Selecting previously unselected package mariadb-common. Preparing to unpack .../25-mariadb-common_1%3a10.5.23-0+deb11u1_all.deb ... Unpacking mariadb-common (1:10.5.23-0+deb11u1) ... Selecting previously unselected package libmariadb3:amd64. Preparing to unpack .../26-libmariadb3_1%3a10.5.23-0+deb11u1_amd64.deb ... Unpacking libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../27-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../28-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../29-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../30-libpq5_13.13-0+deb11u1_amd64.deb ... Unpacking libpq5:amd64 (13.13-0+deb11u1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../31-emboss-lib_6.6.0+dfsg-9_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-9) ... Selecting previously unselected package embassy-domalign. Preparing to unpack .../32-embassy-domalign_0.1.660-4_amd64.deb ... Unpacking embassy-domalign (0.1.660-4) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up mysql-common (5.8+1.0.7) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up ucf (3.0043) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libpq5:amd64 (13.13-0+deb11u1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up emboss-lib (6.6.0+dfsg-9) ... Setting up embassy-domalign (0.1.660-4) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-y', 'install', 'embassy-domalign'] 0m9.3s INFO: Running scripts post_install 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m9.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp2yiw9tw7 to bullseye-next 0m9.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m9.8s INFO: Running scripts pre_distupgrade 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'update'] 0m11.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:4 http://security.debian.org bullseye-security InRelease [48.4 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:7 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [15.6 kB] Get:8 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [11.6 kB] Get:9 http://security.debian.org bullseye-security/main amd64 Packages [269 kB] Get:10 http://security.debian.org bullseye-security/main Translation-en [174 kB] Fetched 647 kB in 1s (673 kB/s) Reading package lists... 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'update'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-yf', 'dist-upgrade'] 0m12.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libpq5 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 182 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://security.debian.org bullseye-security/main amd64 libpq5 amd64 13.14-0+deb11u1 [182 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 182 kB in 0s (3371 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7633 files and directories currently installed.) Preparing to unpack .../libpq5_13.14-0+deb11u1_amd64.deb ... Unpacking libpq5:amd64 (13.14-0+deb11u1) over (13.13-0+deb11u1) ... Setting up libpq5:amd64 (13.14-0+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-yf', 'dist-upgrade'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.8s DUMP: 8c80a9359cf8a6ea730d5fcadcf937ef - 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'show', '--no-all-versions', 'embassy-domalign'] 0m13.1s DUMP: Package: embassy-domalign Version: 0.1.660-4 Installed-Size: 617 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (>= 6.6.0+dfsg), libc6 (>= 2.4), libx11-6, emboss-lib (<< 6.6.1~) Recommends: emboss Suggests: embassy Description-en: Extra EMBOSS commands for protein domain alignment The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. . Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)). Description-md5: 4149429333c4c57628815096efc54167 Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, suite::TODO, use::analysing, use::comparing, use::editing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/e/embassy-domalign/embassy-domalign_0.1.660-4_amd64.deb Size: 68112 MD5sum: e9c77a6514c8e57b1321691677e7aaaf SHA256: ebefa10e79c35ae1efa00a999c1f0fe0125e7d110f27630d53b74813c7c5b6f2 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'show', '--no-all-versions', 'embassy-domalign'] 0m13.1s INFO: apt-cache knows about the following packages: embassy-domalign 0m13.1s INFO: Running scripts pre_install 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_database-server'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_database-server'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_exceptions'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_exceptions'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_extras'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_extras'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy'] 0m13.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy', 'embassy-domalign'] 0m13.2s DUMP: embassy-domalign: Installed: 0.1.660-4 Candidate: 0.1.660-4 Version table: *** 0.1.660-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy', 'embassy-domalign'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-y', 'install', 'embassy-domalign'] 0m13.6s DUMP: Reading package lists... Building dependency tree... Reading state information... embassy-domalign is already the newest version (0.1.660-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-y', 'install', 'embassy-domalign'] 0m13.6s INFO: Running scripts post_install 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_install_exceptions'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_install_exceptions'] 0m13.6s INFO: Running scripts post_distupgrade 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_exceptions'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_exceptions'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_distupgrade_zz_backports'] 0m13.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m14.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m14.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m14.3s INFO: Running scripts pre_install 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_database-server'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_database-server'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_exceptions'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_exceptions'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_extras'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_extras'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy'] 0m14.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy', 'embassy-domalign'] 0m14.5s DUMP: embassy-domalign: Installed: 0.1.660-4 Candidate: 0.1.660-4 Version table: *** 0.1.660-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-cache', 'policy', 'embassy-domalign'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-y', 'install', 'embassy-domalign=0.1.660-4'] 0m15.0s DUMP: Reading package lists... Building dependency tree... Reading state information... embassy-domalign is already the newest version (0.1.660-4). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', '-y', 'install', 'embassy-domalign=0.1.660-4'] 0m15.0s INFO: Running scripts post_install 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_install_exceptions'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_install_exceptions'] 0m15.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m15.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m15.5s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m15.5s INFO: /bin converted to /usr/bin by /usr merge 0m15.5s INFO: /lib converted to /usr/lib by /usr merge 0m15.5s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m15.5s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m15.5s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m15.5s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m15.5s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m15.5s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m15.5s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m15.5s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m15.5s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m15.5s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m15.5s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m15.5s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m15.5s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m15.5s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m15.5s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m15.5s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m15.5s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m15.5s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m15.5s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m15.5s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m15.5s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m15.5s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m15.5s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m15.5s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m15.5s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m15.5s INFO: /sbin converted to /usr/sbin by /usr merge 0m15.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', '-ac', '--ignore-obsolete'] 0m16.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', '-ac', '--ignore-obsolete'] 0m16.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.8s DUMP: 0.15.6 0m16.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m16.8s INFO: Running adequate version 0.15.6 now. 0m16.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'embassy-domalign'] 0m17.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'embassy-domalign'] 0m17.1s INFO: Running scripts pre_remove 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/pre_remove_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed embassy-domalign embassy-domalign 0.1.660-4 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-9 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmariadb3:amd64 libmariadb3 1:10.5.23-0+deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpq5:amd64 libpq5 13.14-0+deb11u1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mariadb-common mariadb-common 1:10.5.23-0+deb11u1 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed mysql-common mysql-common 5.8+1.0.7 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'remove', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libhpdf-2.3.0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libldap-2.4-2:amd64', 'libmariadb3:amd64', 'libmd0:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'mariadb-common', 'mysql-common', 'sensible-utils', 'ucf', 'embassy-domalign'] 0m20.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: embassy-domalign emboss-lib fontconfig-config fonts-dejavu-core libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgd3 libhpdf-2.3.0 libjbig0 libjpeg62-turbo libldap-2.4-2 libmariadb3 libmd0 libpng16-16 libpq5 libsasl2-2 libsasl2-modules-db libtiff5 libwebp6 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 mariadb-common mysql-common sensible-utils ucf 0 upgraded, 0 newly installed, 33 to remove and 0 not upgraded. After this operation, 34.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7633 files and directories currently installed.) Removing embassy-domalign (0.1.660-4) ... Removing emboss-lib (6.6.0+dfsg-9) ... Removing libgd3:amd64 (2.3.0-2) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing fonts-dejavu-core (2.37-2) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libpq5:amd64 (13.14-0+deb11u1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libmariadb3:amd64 (1:10.5.23-0+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing mariadb-common (1:10.5.23-0+deb11u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mysql-common (5.8+1.0.7) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'remove', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libhpdf-2.3.0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libldap-2.4-2:amd64', 'libmariadb3:amd64', 'libmd0:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'mariadb-common', 'mysql-common', 'sensible-utils', 'ucf', 'embassy-domalign'] 0m20.7s INFO: Running scripts post_remove 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_remove_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_remove_exceptions'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--purge', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libhpdf-2.3.0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libldap-2.4-2:amd64', 'libmariadb3:amd64', 'libmd0:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'mariadb-common', 'mysql-common', 'sensible-utils', 'ucf'] 0m21.4s DUMP: dpkg: warning: ignoring request to remove emboss-lib which isn't installed (Reading database ... 6697 files and directories currently installed.) Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed Purging configuration files for mariadb-common (1:10.5.23-0+deb11u1) ... Purging configuration files for mysql-common (5.8+1.0.7) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0043) ... 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--purge', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'libbrotli1:amd64', 'libbsd0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd3:amd64', 'libhpdf-2.3.0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libldap-2.4-2:amd64', 'libmariadb3:amd64', 'libmd0:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'mariadb-common', 'mysql-common', 'sensible-utils', 'ucf'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--purge', 'embassy-domalign'] 0m21.4s DUMP: dpkg: warning: ignoring request to remove embassy-domalign which isn't installed 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--purge', 'embassy-domalign'] 0m21.4s INFO: Running scripts post_purge 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_purge_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_purge_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--purge', '--pending'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--purge', '--pending'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--remove', '--pending'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg', '--remove', '--pending'] 0m21.4s INFO: Running scripts post_test 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_test_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'tmp/scripts/post_test_exceptions'] 0m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m21.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg-divert', '--list'] 0m21.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'dpkg-divert', '--list'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'clean'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7', 'apt-get', 'clean'] 0m21.9s DEBUG: Recording chroot state 0m22.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/shm'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/shm'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/console'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/console'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/ptmx'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/ptmx'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/pts'] 0m22.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/dev/pts'] 0m22.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/proc'] 0m23.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7/proc'] 0m23.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m23.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2yiw9tw7'] 0m23.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2yiw9tw7 0m23.1s INFO: PASS: Upgrading between Debian distributions. 0m23.1s INFO: PASS: All tests. 0m23.1s INFO: piuparts run ends. ret=0 End: 2024-03-12 19:03:31 GMT