Start: 2023-12-26 17:57:40 GMT [bullseye] Package: gbrowse Version: 2.56+dfsg-8 Installed-Size: 7018 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-8_all.deb Size: 2373896 MD5sum: 79c787e3cc8e6236094b77f823232fb2 SHA256: 56751a1b28ccaea438c1f2bdd6dd5f8943559770d5bce83daefd09d69368daca [bullseye-next] Package: gbrowse Version: 2.56+dfsg-8 Installed-Size: 7018 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description: GMOD Generic Genome Browser Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-8_all.deb Size: 2373896 MD5sum: 79c787e3cc8e6236094b77f823232fb2 SHA256: 56751a1b28ccaea438c1f2bdd6dd5f8943559770d5bce83daefd09d69368daca Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt gbrowse=2.56+dfsg-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt gbrowse=2.56+dfsg-8 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-26-amd64 #1 SMP Debian 5.10.197-1 (2023-09-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_9wk7ibz 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_9wk7ibz 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m1.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/console'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/console'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_9wk7ibz/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'update'] 0m2.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: cd994be14815166bf41ad7cebd6f56fc - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_forbid_home'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u6 install ok installed libc6:amd64 libc6 2.31-13+deb11u6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u10 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m4.9s INFO: Running scripts is_testable 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/is_testable_uninstallable'] 0m4.9s INFO: Running scripts pre_test 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_test_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_test_root_password'] 0m4.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_test_root_password'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m5.1s DUMP: Package: gbrowse Version: 2.56+dfsg-8 Installed-Size: 7018 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description-en: GMOD Generic Genome Browser Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features: * Simultaneous bird's eye and detailed views of the genome; * Scroll, zoom, center; * Attach arbitrary URLs to any annotation; * Order and appearance of tracks are customizable by administrator and end-user; * Search by annotation ID, name, or comment; * Supports third party annotation using GFF formats; * Settings persist across sessions; * DNA and GFF dumps; * Connectivity to different databases, including BioSQL and Chado; * Multi-language support; * Third-party feature loading; * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features). Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-8_all.deb Size: 2373896 MD5sum: 79c787e3cc8e6236094b77f823232fb2 SHA256: 56751a1b28ccaea438c1f2bdd6dd5f8943559770d5bce83daefd09d69368daca 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m5.1s INFO: apt-cache knows about the following packages: gbrowse 0m5.1s INFO: Running scripts pre_install 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_database-server'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_extras'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy'] 0m5.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy', 'gbrowse'] 0m5.2s DUMP: gbrowse: Installed: (none) Candidate: 2.56+dfsg-8 Version table: 2.56+dfsg-8 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy', 'gbrowse'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-y', 'install', 'gbrowse'] 0m19.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libclass-data-inheritable-perl libcommon-sense-perl libcurl4 libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu67 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmd0 libncurses6 libncursesw6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libperl5.32 libpng16-16 libpq5 libprocps8 libpsl5 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libstatistics-descriptive-perl libstring-approx-perl libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtry-tiny-perl liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 mailcap media-types mime-support netbase openssl perl perl-modules-5.32 perl-openssl-defaults procps readline-common sensible-utils sqlite3 ucf Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser groff-base gbrowse-data gbrowse-calign libfile-nfslock-perl libev-perl libevent-perl libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl libclone-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl readline-doc sqlite3-doc Recommended packages: ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl libalgorithm-diff-xs-perl libasync-interrupt-perl libev-perl | libevent-perl libguard-perl libapache2-reload-perl libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl javascript-common libjson-xs-perl libldap-common libgpm2 publicsuffix libsasl2-modules libdata-dump-perl libhtml-form-perl libmailtools-perl libxml-sax-expat-perl bzip2 file xz-utils psmisc The following NEW packages will be installed: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libclass-data-inheritable-perl libcommon-sense-perl libcurl4 libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu67 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmd0 libncurses6 libncursesw6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libperl5.32 libpng16-16 libpq5 libprocps8 libpsl5 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libstatistics-descriptive-perl libstring-approx-perl libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtry-tiny-perl liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 mailcap media-types mime-support netbase openssl perl perl-modules-5.32 perl-openssl-defaults procps readline-common sensible-utils sqlite3 ucf 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 43.3 MB of archives. After this operation, 159 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u2 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u2 [4106 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u2 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libapr1 amd64 1.7.0-6+deb11u2 [106 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libaprutil1 amd64 1.6.1-5+deb11u1 [92.3 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-5+deb11u1 [19.0 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libaprutil1-ldap amd64 1.6.1-5+deb11u1 [17.2 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u9 [347 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libjansson4 amd64 2.13.1-1.1 [39.7 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 liblua5.3-0 amd64 5.3.3-1.1+deb11u1 [123 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 apache2-bin amd64 2.4.56-1~deb11u2 [1431 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 apache2-data all 2.4.56-1~deb11u2 [160 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 apache2-utils amd64 2.4.56-1~deb11u2 [265 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 apache2 amd64 2.4.56-1~deb11u2 [278 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 netbase all 6.3 [19.9 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-2 [2607 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:47 http://deb.debian.org/debian bullseye/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libtest-deep-perl all 1.130-1 [49.3 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libtest-differences-perl all 0.67-1 [18.7 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libsub-uplevel-perl all 0.2800-1.1 [16.5 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libtest-most-perl all 0.37-1 [24.9 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 bioperl all 1.7.7-2 [246 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u4 [290 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u1 [772 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libxpm4 amd64 1:3.5.12-1.1~deb11u1 [49.6 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libgd-perl amd64 2.73-1+b1 [141 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libdevel-symdump-perl all 2.18-4 [17.5 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libfile-listing-perl all 6.14-1 [12.4 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libhtml-parser-perl amd64 3.75-1+b1 [105 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libio-html-perl all 1.004-2 [16.1 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libhttp-message-perl all 6.28-1 [79.6 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:94 http://deb.debian.org/debian bullseye/main amd64 libnet-ssleay-perl amd64 1.88-3+b1 [321 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libnet-http-perl all 6.20-1 [25.1 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libwww-perl all 6.52-1 [192 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libapache2-mod-perl2 amd64 2.0.11-4 [887 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libdbi-perl amd64 1.643-3+b1 [780 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libcgi-pm-perl all 4.51-1 [224 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libpq5 amd64 13.11-0+deb11u1 [180 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libdbd-pg-perl amd64 3.14.2-1+b1 [215 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libdbd-sqlite3-perl amd64 1.66-1+b1 [179 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libbio-db-seqfeature-perl all 1.7.4-1 [169 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libbio-graphics-perl all 2.40-6 [610 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libbio-coordinate-perl all 1.7.1-4 [56.7 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libcgi-session-perl all 4.48-3 [119 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libjson-perl all 4.03000-1 [88.6 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libhttp-daemon-perl all 6.12-1+deb11u1 [23.4 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 sqlite3 amd64 3.34.1-3 [1201 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libjs-prototype all 1.7.1-3.1 [39.2 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libjs-scriptaculous all 1.9.0-2.1 [110 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libanyevent-perl amd64 7.170-2+b1 [399 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libanyevent-cachedns-perl all 0.08-2.1 [7292 B] Get:126 http://deb.debian.org/debian bullseye/main amd64 libcommon-sense-perl amd64 3.75-1+b4 [24.6 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libanyevent-http-perl all 2.25-1 [36.5 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libstring-approx-perl amd64 3.28-1+b3 [40.3 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libvm-ec2-perl all 1.28-2 [768 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 gbrowse all 2.56+dfsg-8 [2374 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.3 MB in 1s (68.3 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6666 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.32_5.32.1-4+deb11u2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u2) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../001-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:amd64. Preparing to unpack .../009-libaprutil1-dbd-sqlite3_1.6.1-5+deb11u1_amd64.deb ... Unpacking libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../010-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../011-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../012-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libaprutil1-ldap:amd64. Preparing to unpack .../013-libaprutil1-ldap_1.6.1-5+deb11u1_amd64.deb ... Unpacking libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../014-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../015-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../016-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../017-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../018-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../019-libcurl4_7.74.0-1.3+deb11u9_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u9) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../020-libjansson4_2.13.1-1.1_amd64.deb ... Unpacking libjansson4:amd64 (2.13.1-1.1) ... Selecting previously unselected package liblua5.3-0:amd64. Preparing to unpack .../021-liblua5.3-0_5.3.3-1.1+deb11u1_amd64.deb ... Unpacking liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../022-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../023-libxml2_2.9.10+dfsg-6.7+deb11u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../024-apache2-bin_2.4.56-1~deb11u2_amd64.deb ... Unpacking apache2-bin (2.4.56-1~deb11u2) ... Selecting previously unselected package apache2-data. Preparing to unpack .../025-apache2-data_2.4.56-1~deb11u2_all.deb ... Unpacking apache2-data (2.4.56-1~deb11u2) ... Selecting previously unselected package apache2-utils. Preparing to unpack .../026-apache2-utils_2.4.56-1~deb11u2_amd64.deb ... Unpacking apache2-utils (2.4.56-1~deb11u2) ... Selecting previously unselected package media-types. Preparing to unpack .../027-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../028-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../029-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../030-libncurses6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../031-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../032-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../033-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package apache2. Preparing to unpack .../034-apache2_2.4.56-1~deb11u2_amd64.deb ... Unpacking apache2 (2.4.56-1~deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../035-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../036-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package netbase. Preparing to unpack .../037-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../038-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../039-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../040-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package ucf. Preparing to unpack .../041-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../042-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../043-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../044-libbio-perl-perl_1.7.7-2_all.deb ... Unpacking libbio-perl-perl (1.7.7-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../045-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../046-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../047-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../048-libtest-deep-perl_1.130-1_all.deb ... Unpacking libtest-deep-perl (1.130-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../049-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../050-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../051-libtext-diff-perl_1.45-1_all.deb ... Unpacking libtext-diff-perl (1.45-1) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../052-libtest-differences-perl_0.67-1_all.deb ... Unpacking libtest-differences-perl (0.67-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../053-libsub-uplevel-perl_0.2800-1.1_all.deb ... Unpacking libsub-uplevel-perl (0.2800-1.1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../054-libtest-exception-perl_0.43-1_all.deb ... Unpacking libtest-exception-perl (0.43-1) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../055-libtest-warn-perl_0.36-1_all.deb ... Unpacking libtest-warn-perl (0.36-1) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../056-libtest-most-perl_0.37-1_all.deb ... Unpacking libtest-most-perl (0.37-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../057-bioperl_1.7.7-2_all.deb ... Unpacking bioperl (1.7.7-2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../058-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../059-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../060-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../061-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../062-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../063-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../064-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../065-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../066-libwebp6_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../067-libtiff5_4.2.0-1+deb11u4_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u4) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../068-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../069-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../070-libbsd0_0.11.3-1+deb11u1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../071-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../072-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../073-libx11-data_2%3a1.7.2-1+deb11u1_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../074-libx11-6_2%3a1.7.2-1+deb11u1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../075-libxpm4_1%3a3.5.12-1.1~deb11u1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1.1~deb11u1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../076-libgd3_2.3.0-2_amd64.deb ... Unpacking libgd3:amd64 (2.3.0-2) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../077-libgd-perl_2.73-1+b1_amd64.deb ... Unpacking libgd-perl (2.73-1+b1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../078-libdevel-symdump-perl_2.18-4_all.deb ... Unpacking libdevel-symdump-perl (2.18-4) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../079-liburi-perl_5.08-1_all.deb ... Unpacking liburi-perl (5.08-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../080-libencode-locale-perl_1.05-1.1_all.deb ... Unpacking libencode-locale-perl (1.05-1.1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../081-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../082-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../083-libfile-listing-perl_6.14-1_all.deb ... Unpacking libfile-listing-perl (6.14-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../084-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../085-libhtml-parser-perl_3.75-1+b1_amd64.deb ... Unpacking libhtml-parser-perl (3.75-1+b1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../086-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../087-libio-html-perl_1.004-2_all.deb ... Unpacking libio-html-perl (1.004-2) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../088-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../089-libhttp-message-perl_6.28-1_all.deb ... Unpacking libhttp-message-perl (6.28-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../090-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../091-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../092-perl-openssl-defaults_5_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (5) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../093-libnet-ssleay-perl_1.88-3+b1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-3+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../094-libio-socket-ssl-perl_2.069-1_all.deb ... Unpacking libio-socket-ssl-perl (2.069-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../095-libnet-http-perl_6.20-1_all.deb ... Unpacking libnet-http-perl (6.20-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../096-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../097-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../098-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../099-libwww-perl_6.52-1_all.deb ... Unpacking libwww-perl (6.52-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../100-libapache2-mod-perl2_2.0.11-4_amd64.deb ... Unpacking libapache2-mod-perl2 (2.0.11-4) ... Selecting previously unselected package libdbi-perl:amd64. Preparing to unpack .../101-libdbi-perl_1.643-3+b1_amd64.deb ... Unpacking libdbi-perl:amd64 (1.643-3+b1) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../102-libapache-dbi-perl_1.12-2_all.deb ... Unpacking libapache-dbi-perl (1.12-2) ... Selecting previously unselected package libbio-db-biofetch-perl. Preparing to unpack .../103-libbio-db-biofetch-perl_1.7.3-4_all.deb ... Unpacking libbio-db-biofetch-perl (1.7.3-4) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../104-libcgi-pm-perl_4.51-1_all.deb ... Unpacking libcgi-pm-perl (4.51-1) ... Selecting previously unselected package libbio-db-gff-perl. Preparing to unpack .../105-libbio-db-gff-perl_1.7.4-1_all.deb ... Unpacking libbio-db-gff-perl (1.7.4-1) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../106-libpq5_13.11-0+deb11u1_amd64.deb ... Unpacking libpq5:amd64 (13.11-0+deb11u1) ... Selecting previously unselected package libdbd-pg-perl. Preparing to unpack .../107-libdbd-pg-perl_3.14.2-1+b1_amd64.deb ... Unpacking libdbd-pg-perl (3.14.2-1+b1) ... Selecting previously unselected package libdbd-sqlite3-perl:amd64. Preparing to unpack .../108-libdbd-sqlite3-perl_1.66-1+b1_amd64.deb ... Unpacking libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Selecting previously unselected package libbio-db-seqfeature-perl. Preparing to unpack .../109-libbio-db-seqfeature-perl_1.7.4-1_all.deb ... Unpacking libbio-db-seqfeature-perl (1.7.4-1) ... Selecting previously unselected package libbio-graphics-perl. Preparing to unpack .../110-libbio-graphics-perl_2.40-6_all.deb ... Unpacking libbio-graphics-perl (2.40-6) ... Selecting previously unselected package libbio-coordinate-perl. Preparing to unpack .../111-libbio-coordinate-perl_1.7.1-4_all.deb ... Unpacking libbio-coordinate-perl (1.7.1-4) ... Selecting previously unselected package libcgi-session-perl. Preparing to unpack .../112-libcgi-session-perl_4.48-3_all.deb ... Unpacking libcgi-session-perl (4.48-3) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../113-libjson-perl_4.03000-1_all.deb ... Unpacking libjson-perl (4.03000-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../114-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../115-liblist-moreutils-xs-perl_0.430-2_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../116-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libstatistics-descriptive-perl. Preparing to unpack .../117-libstatistics-descriptive-perl_3.0800-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0800-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../118-libhttp-daemon-perl_6.12-1+deb11u1_all.deb ... Unpacking libhttp-daemon-perl (6.12-1+deb11u1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../119-libterm-readkey-perl_2.38-1+b2_amd64.deb ... Unpacking libterm-readkey-perl (2.38-1+b2) ... Selecting previously unselected package sqlite3. Preparing to unpack .../120-sqlite3_3.34.1-3_amd64.deb ... Unpacking sqlite3 (3.34.1-3) ... Selecting previously unselected package libjs-prototype. Preparing to unpack .../121-libjs-prototype_1.7.1-3.1_all.deb ... Unpacking libjs-prototype (1.7.1-3.1) ... Selecting previously unselected package libjs-scriptaculous. Preparing to unpack .../122-libjs-scriptaculous_1.9.0-2.1_all.deb ... Unpacking libjs-scriptaculous (1.9.0-2.1) ... Selecting previously unselected package libanyevent-perl. Preparing to unpack .../123-libanyevent-perl_7.170-2+b1_amd64.deb ... Unpacking libanyevent-perl (7.170-2+b1) ... Selecting previously unselected package libanyevent-cachedns-perl. Preparing to unpack .../124-libanyevent-cachedns-perl_0.08-2.1_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-2.1) ... Selecting previously unselected package libcommon-sense-perl. Preparing to unpack .../125-libcommon-sense-perl_3.75-1+b4_amd64.deb ... Unpacking libcommon-sense-perl (3.75-1+b4) ... Selecting previously unselected package libanyevent-http-perl. Preparing to unpack .../126-libanyevent-http-perl_2.25-1_all.deb ... Unpacking libanyevent-http-perl (2.25-1) ... Selecting previously unselected package libstring-approx-perl. Preparing to unpack .../127-libstring-approx-perl_3.28-1+b3_amd64.deb ... Unpacking libstring-approx-perl (3.28-1+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../128-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../129-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../130-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../131-libxml-libxml-perl_2.0134+dfsg-2+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../132-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libvm-ec2-perl. Preparing to unpack .../133-libvm-ec2-perl_1.28-2_all.deb ... Unpacking libvm-ec2-perl (1.28-2) ... Selecting previously unselected package gbrowse. Preparing to unpack .../134-gbrowse_2.56+dfsg-8_all.deb ... Unpacking gbrowse (2.56+dfsg-8) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up media-types (4.0.0) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libicu67:amd64 (67.1-7) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u2) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libapr1:amd64 (1.7.0-6+deb11u2) ... Setting up perl-openssl-defaults:amd64 (5) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libjansson4:amd64 (2.13.1-1.1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libjs-prototype (1.7.1-3.1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up netbase (6.3) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u4) ... Setting up apache2-data (2.4.56-1~deb11u2) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libaprutil1:amd64 (1.6.1-5+deb11u1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libjs-scriptaculous (1.9.0-2.1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u2) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u9) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u1) ... Setting up sqlite3 (3.34.1-3) ... Setting up apache2-utils (2.4.56-1~deb11u2) ... Setting up libxpm4:amd64 (1:3.5.12-1.1~deb11u1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libpq5:amd64 (13.11-0+deb11u1) ... Setting up perl (5.32.1-4+deb11u2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libio-html-perl (1.004-2) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libjson-perl (4.03000-1) ... Setting up libsub-uplevel-perl (0.2800-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libdevel-symdump-perl (2.18-4) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up mailcap (3.69) ... Setting up liburi-perl (5.08-1) ... Setting up libdbi-perl:amd64 (1.643-3+b1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up libanyevent-perl (7.170-2+b1) ... Setting up libstring-approx-perl (3.28-1+b3) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-listing-perl (6.14-1) ... Setting up mime-support (3.66) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libcommon-sense-perl (3.75-1+b4) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up libnet-http-perl (6.20-1) ... Setting up libanyevent-http-perl (2.25-1) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libdbd-pg-perl (3.14.2-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up apache2-bin (2.4.56-1~deb11u2) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libanyevent-cachedns-perl (0.08-2.1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up apache2 (2.4.56-1~deb11u2) ... Enabling module mpm_event. Enabling module authz_core. Enabling module authz_host. Enabling module authn_core. Enabling module auth_basic. Enabling module access_compat. Enabling module authn_file. Enabling module authz_user. Enabling module alias. Enabling module dir. Enabling module autoindex. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module filter. Enabling module deflate. Enabling module status. Enabling module reqtimeout. Enabling conf charset. Enabling conf localized-error-pages. Enabling conf other-vhosts-access-log. Enabling conf security. Enabling conf serve-cgi-bin. Enabling site 000-default. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libcgi-pm-perl (4.51-1) ... Setting up libtest-differences-perl (0.67-1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgd-perl (2.73-1+b1) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-daemon-perl (6.12-1+deb11u1) ... Setting up libtest-most-perl (0.37-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up bioperl (1.7.7-2) ... Setting up libbio-coordinate-perl (1.7.1-4) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.52-1) ... Setting up libapache2-mod-perl2 (2.0.11-4) ... apache2_invoke: Enable module perl invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libvm-ec2-perl (1.28-2) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Setting up libbio-db-seqfeature-perl (1.7.4-1) ... Setting up libbio-graphics-perl (2.40-6) ... Setting up gbrowse (2.56+dfsg-8) ... apache2_invoke: Enable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-y', 'install', 'gbrowse'] 0m19.3s INFO: Running scripts post_install 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m20.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp_9wk7ibz to bullseye-next 0m20.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m20.0s INFO: Running scripts pre_distupgrade 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'update'] 0m21.3s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://security.debian.org bullseye-security InRelease [48.4 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [17.7 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.1 kB] Get:7 http://security.debian.org bullseye-security/main amd64 Packages [263 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [169 kB] Get:9 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [121 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [69.3 kB] Fetched 797 kB in 1s (1197 kB/s) Reading package lists... 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'update'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-yf', 'dist-upgrade'] 0m25.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 libcurl4 libgnutls30 libnghttp2-14 libperl5.32 libpq5 libtiff5 libx11-6 libx11-data libxpm4 perl perl-base perl-modules-5.32 tzdata 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.2 MB of archives. After this operation, 12.3 kB of additional disk space will be used. Get:1 http://security.debian.org bullseye-security/main amd64 libc6 amd64 2.31-13+deb11u7 [2823 kB] Get:2 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:3 http://security.debian.org bullseye-security/main amd64 libc-bin amd64 2.31-13+deb11u7 [829 kB] Get:4 http://security.debian.org bullseye-security/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:5 http://security.debian.org bullseye-security/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:6 http://security.debian.org bullseye-security/main amd64 libpq5 amd64 13.13-0+deb11u1 [182 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:8 http://security.debian.org bullseye-security/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:11 http://security.debian.org bullseye-security/main amd64 libxpm4 amd64 1:3.5.12-1.1+deb11u1 [50.0 kB] Get:12 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 perl-base amd64 5.32.1-4+deb11u3 [1628 kB] Get:13 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:14 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libgnutls30 amd64 3.7.1-5+deb11u4 [1340 kB] Get:15 http://deb.debian.org/debian bullseye-updates/main amd64 tzdata all 2021a-1+deb11u11 [287 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.2 MB in 0s (138 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15272 files and directories currently installed.) Preparing to unpack .../libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Preparing to unpack .../perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Preparing to unpack .../perl-base_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Setting up perl-base (5.32.1-4+deb11u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15272 files and directories currently installed.) Preparing to unpack .../perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Preparing to unpack .../libc6_2.31-13+deb11u7_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u7) over (2.31-13+deb11u6) ... Setting up libc6:amd64 (2.31-13+deb11u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15272 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u7_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u7) over (2.31-13+deb11u6) ... Setting up libc-bin (2.31-13+deb11u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15272 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u4) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15272 files and directories currently installed.) Preparing to unpack .../0-tzdata_2021a-1+deb11u11_all.deb ... Unpacking tzdata (2021a-1+deb11u11) over (2021a-1+deb11u10) ... Preparing to unpack .../1-libnghttp2-14_1.43.0-1+deb11u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u1) over (1.43.0-1) ... Preparing to unpack .../2-libcurl4_7.74.0-1.3+deb11u11_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u11) over (7.74.0-1.3+deb11u9) ... Preparing to unpack .../3-libpq5_13.13-0+deb11u1_amd64.deb ... Unpacking libpq5:amd64 (13.13-0+deb11u1) over (13.11-0+deb11u1) ... Preparing to unpack .../4-libtiff5_4.2.0-1+deb11u5_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u5) over (4.2.0-1+deb11u4) ... Preparing to unpack .../5-libx11-data_2%3a1.7.2-1+deb11u2_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u2) over (2:1.7.2-1+deb11u1) ... Preparing to unpack .../6-libx11-6_2%3a1.7.2-1+deb11u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1+deb11u2) over (2:1.7.2-1+deb11u1) ... Preparing to unpack .../7-libxpm4_1%3a3.5.12-1.1+deb11u1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1.1+deb11u1) over (1:3.5.12-1.1~deb11u1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libpq5:amd64 (13.13-0+deb11u1) ... Setting up tzdata (2021a-1+deb11u11) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 26 17:58:05 UTC 2023. Universal Time is now: Tue Dec 26 17:58:05 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Setting up perl (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u7) ... 0m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-yf', 'dist-upgrade'] 0m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.4s DUMP: fb2bd173d64282436927cf51c8f19260 - 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m25.6s DUMP: Package: gbrowse Version: 2.56+dfsg-8 Installed-Size: 7018 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl:any, apache2 | httpd-cgi, bioperl, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcgi-session-perl, libgd-gd2-noxpm-perl | libgd-gd2-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, lsb-base Recommends: apache2 (>= 2.4.6-4~) | httpd Suggests: gbrowse-data, gbrowse-calign, libfile-nfslock-perl Description-en: GMOD Generic Genome Browser Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features: * Simultaneous bird's eye and detailed views of the genome; * Scroll, zoom, center; * Attach arbitrary URLs to any annotation; * Order and appearance of tracks are customizable by administrator and end-user; * Search by annotation ID, name, or comment; * Supports third party annotation using GFF formats; * Settings persist across sessions; * DNA and GFF dumps; * Connectivity to different databases, including BioSQL and Chado; * Multi-language support; * Third-party feature loading; * Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features). Description-md5: 0aa2912bfc190ad55fe33a0ecfc2aabe Multi-Arch: foreign Homepage: http://gmod.org/wiki/GBrowse Tag: field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::program, use::analysing, use::viewing, web::application, web::cgi Section: science Priority: optional Filename: pool/main/g/gbrowse/gbrowse_2.56+dfsg-8_all.deb Size: 2373896 MD5sum: 79c787e3cc8e6236094b77f823232fb2 SHA256: 56751a1b28ccaea438c1f2bdd6dd5f8943559770d5bce83daefd09d69368daca 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'show', '--no-all-versions', 'gbrowse'] 0m25.6s INFO: apt-cache knows about the following packages: gbrowse 0m25.6s INFO: Running scripts pre_install 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_database-server'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_database-server'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_exceptions'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_exceptions'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_extras'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_extras'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy'] 0m25.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy', 'gbrowse'] 0m25.7s DUMP: gbrowse: Installed: 2.56+dfsg-8 Candidate: 2.56+dfsg-8 Version table: *** 2.56+dfsg-8 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy', 'gbrowse'] 0m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-y', 'install', 'gbrowse'] 0m26.0s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse is already the newest version (2.56+dfsg-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-y', 'install', 'gbrowse'] 0m26.0s INFO: Running scripts post_install 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_install_exceptions'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_install_exceptions'] 0m26.0s INFO: Running scripts post_distupgrade 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_exceptions'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_distupgrade_zz_backports'] 0m26.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m26.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m26.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m27.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m27.5s INFO: Running scripts pre_install 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_database-server'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_database-server'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_exceptions'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_extras'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_extras'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy'] 0m27.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy', 'gbrowse'] 0m27.6s DUMP: gbrowse: Installed: 2.56+dfsg-8 Candidate: 2.56+dfsg-8 Version table: *** 2.56+dfsg-8 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-cache', 'policy', 'gbrowse'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-y', 'install', 'gbrowse=2.56+dfsg-8'] 0m28.0s DUMP: Reading package lists... Building dependency tree... Reading state information... gbrowse is already the newest version (2.56+dfsg-8). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', '-y', 'install', 'gbrowse=2.56+dfsg-8'] 0m28.0s INFO: Running scripts post_install 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_install_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_install_exceptions'] 0m28.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m28.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m29.1s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m29.1s INFO: /bin converted to /usr/bin by /usr merge 0m29.1s INFO: /lib converted to /usr/lib by /usr merge 0m29.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m29.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m29.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m29.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m29.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m29.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m29.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m29.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m29.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m29.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m29.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m29.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m29.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m29.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m29.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m29.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m29.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m29.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m29.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m29.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m29.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m29.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m29.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m29.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m29.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m29.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m29.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', '-ac', '--ignore-obsolete'] 0m31.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', '-ac', '--ignore-obsolete'] 0m31.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.0s DUMP: 0.15.6 0m31.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.0s INFO: Running adequate version 0.15.6 now. 0m31.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'gbrowse'] 0m31.3s DUMP: gbrowse: broken-symlink /usr/share/gbrowse/htdocs/i -> /var/cache/gbrowse/images 0m31.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'gbrowse'] 0m31.3s ERROR: WARN: Inadequate results from running adequate! gbrowse: broken-symlink /usr/share/gbrowse/htdocs/i -> /var/cache/gbrowse/images 0m31.3s ERROR: WARN: Running adequate resulted in less interesting tags found: broken-symlink 0m31.3s INFO: Running scripts pre_remove 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_exceptions'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/pre_remove_exceptions'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.0s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apache2 apache2 2.4.56-1~deb11u2 install ok installed apache2-bin apache2-bin 2.4.56-1~deb11u2 install ok installed apache2-data apache2-data 2.4.56-1~deb11u2 install ok installed apache2-utils apache2-utils 2.4.56-1~deb11u2 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bioperl bioperl 1.7.7-2 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed ca-certificates ca-certificates 20210119 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed gbrowse gbrowse 2.56+dfsg-8 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libanyevent-cachedns-perl libanyevent-cachedns-perl 0.08-2.1 install ok installed libanyevent-http-perl libanyevent-http-perl 2.25-1 install ok installed libanyevent-perl libanyevent-perl 7.170-2+b1 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.11-4 install ok installed libapr1:amd64 libapr1 1.7.0-6+deb11u2 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-5+deb11u1 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-5+deb11u1 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-5+deb11u1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libbio-coordinate-perl libbio-coordinate-perl 1.7.1-4 install ok installed libbio-db-biofetch-perl libbio-db-biofetch-perl 1.7.3-4 install ok installed libbio-db-gff-perl libbio-db-gff-perl 1.7.4-1 install ok installed libbio-db-seqfeature-perl libbio-db-seqfeature-perl 1.7.4-1 install ok installed libbio-graphics-perl libbio-graphics-perl 2.40-6 install ok installed libbio-perl-perl libbio-perl-perl 1.7.7-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u7 install ok installed libc6:amd64 libc6 2.31-13+deb11u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libcgi-pm-perl libcgi-pm-perl 4.51-1 install ok installed libcgi-session-perl libcgi-session-perl 4.48-3 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcommon-sense-perl libcommon-sense-perl 3.75-1+b4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcurl4:amd64 libcurl4 7.74.0-1.3+deb11u11 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdbd-pg-perl libdbd-pg-perl 3.14.2-1+b1 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.66-1+b1 install ok installed libdbi-perl:amd64 libdbi-perl 1.643-3+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0400-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-4 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1.1 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.002002-1 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfile-listing-perl libfile-listing-perl 6.14-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgd-perl libgd-perl 2.73-1+b1 install ok installed libgd3:amd64 libgd3 2.3.0-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.75-1+b1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-4 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.10-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.12-1+deb11u1 install ok installed libhttp-date-perl libhttp-date-perl 6.05-1 install ok installed libhttp-message-perl libhttp-message-perl 6.28-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libio-html-perl libio-html-perl 1.004-2 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.069-1 install ok installed libio-string-perl libio-string-perl 1.08-3.1 install ok installed libjansson4:amd64 libjansson4 2.13.1-1.1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-prototype libjs-prototype 1.7.1-3.1 install ok installed libjs-scriptaculous libjs-scriptaculous 1.9.0-2.1 install ok installed libjson-perl libjson-perl 4.03000-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.430-2 install ok installed liblist-moreutils-xs-perl liblist-moreutils-xs-perl 0.430-2 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.3-1.1+deb11u1 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.10-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnet-http-perl libnet-http-perl 6.20-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.88-3+b1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpq5:amd64 libpq5 13.13-0+deb11u1 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0800-1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libstring-approx-perl libstring-approx-perl 3.28-1+b3 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1.1 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.38-1+b2 install ok installed libtest-deep-perl libtest-deep-perl 1.130-1 install ok installed libtest-differences-perl libtest-differences-perl 0.67-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.37-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed liburi-perl liburi-perl 5.08-1 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libvm-ec2-perl libvm-ec2-perl 1.28-2 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwww-perl libwww-perl 6.52-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-2+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1.1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1.1 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1.1+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed netbase netbase 6.3 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 5 install ok installed procps procps 2:3.3.17-5 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sqlite3 sqlite3 3.34.1-3 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u11 install ok installed ucf ucf 3.0043 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'remove', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-diff-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcapture-tiny-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libclass-data-inheritable-perl', 'libcommon-sense-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdeflate0:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu67:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmd0:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sensible-utils', 'sqlite3', 'ucf', 'gbrowse'] 0m37.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: apache2 apache2-bin apache2-data apache2-utils bioperl ca-certificates fontconfig-config fonts-dejavu-core gbrowse libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libbrotli1 libbsd0 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl libclass-data-inheritable-perl libcommon-sense-perl libcurl4 libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfile-listing-perl libfontconfig1 libfreetype6 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu67 libio-html-perl libio-socket-ssl-perl libio-string-perl libjansson4 libjbig0 libjpeg62-turbo libjs-prototype libjs-scriptaculous libjson-perl libldap-2.4-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.3-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmd0 libncurses6 libncursesw6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libperl5.32 libpng16-16 libpq5 libprocps8 libpsl5 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libstatistics-descriptive-perl libstring-approx-perl libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtiff5 libtimedate-perl libtry-tiny-perl liburi-perl libvm-ec2-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 mailcap media-types mime-support netbase openssl perl perl-modules-5.32 perl-openssl-defaults procps readline-common sensible-utils sqlite3 ucf 0 upgraded, 0 newly installed, 135 to remove and 0 not upgraded. After this operation, 159 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15272 files and directories currently installed.) Removing gbrowse (2.56+dfsg-8) ... Conf gbrowse disabled. apache2_invoke prerm: Disable configuration gbrowse invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of reload. Removing apache2 (2.4.56-1~deb11u2) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libbio-graphics-perl (2.40-6) ... Removing libbio-db-seqfeature-perl (1.7.4-1) ... Removing libbio-db-gff-perl (1.7.4-1) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.11-4) ... Removing apache2-bin (2.4.56-1~deb11u2) ... dpkg: warning: while removing apache2-bin, directory '/var/lib/apache2' not empty so not removed Removing apache2-data (2.4.56-1~deb11u2) ... Removing apache2-utils (2.4.56-1~deb11u2) ... Removing libbio-coordinate-perl (1.7.1-4) ... Removing bioperl (1.7.7-2) ... Removing libvm-ec2-perl (1.28-2) ... Removing libgd-perl (2.73-1+b1) ... Removing libgd3:amd64 (2.3.0-2) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing fonts-dejavu-core (2.37-2) ... Removing libtest-most-perl (0.37-1) ... Removing libtest-differences-perl (0.67-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libanyevent-cachedns-perl (0.08-2.1) ... Removing libanyevent-http-perl (2.25-1) ... Removing libanyevent-perl (7.170-2+b1) ... Removing libaprutil1-ldap:amd64 (1.6.1-5+deb11u1) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-5+deb11u1) ... Removing libaprutil1:amd64 (1.6.1-5+deb11u1) ... Removing libapr1:amd64 (1.7.0-6+deb11u2) ... Removing libbio-db-biofetch-perl (1.7.3-4) ... Removing libbio-perl-perl (1.7.7-2) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libxpm4:amd64 (1:3.5.12-1.1+deb11u1) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libcgi-session-perl (4.48-3) ... Removing libcgi-pm-perl (4.51-1) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libcommon-sense-perl (3.75-1+b4) ... Removing libdata-stag-perl (0.14-2) ... Removing libdbd-pg-perl (3.14.2-1+b1) ... Removing libdbd-sqlite3-perl:amd64 (1.66-1+b1) ... Removing libdbi-perl:amd64 (1.643-3+b1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libdevel-stacktrace-perl (2.0400-1) ... Removing libdevel-symdump-perl (2.18-4) ... Removing libhttp-daemon-perl (6.12-1+deb11u1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libstatistics-descriptive-perl (3.0800-1) ... Removing liblist-moreutils-perl (0.430-2) ... Removing libexporter-tiny-perl (1.002002-1) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-sax-base-perl (1.09-1.1) ... Removing libxml-namespacesupport-perl (1.12-1.1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libicu67:amd64 (67.1-7) ... Removing libio-string-perl (1.08-3.1) ... Removing libjansson4:amd64 (2.13.1-1.1) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libjs-scriptaculous (1.9.0-2.1) ... Removing libjs-prototype (1.7.1-3.1) ... Removing libjson-perl (4.03000-1) ... Removing libpq5:amd64 (13.13-0+deb11u1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing liblist-moreutils-xs-perl (0.430-2) ... Removing liblua5.3-0:amd64 (5.3.3-1.1+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing procps (2:3.3.17-5) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing sqlite3 (3.34.1-3) ... Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libstring-approx-perl (3.28-1+b3) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1.1) ... Removing libterm-readkey-perl (2.38-1+b2) ... Removing libtest-deep-perl (1.130-1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing liblwp-protocol-https-perl (6.10-1) ... Removing libwww-perl (6.52-1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.14-1) ... Removing libhttp-cookies-perl (6.10-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.75-1+b1) ... Removing libhtml-tagset-perl (3.20-4) ... Removing libio-socket-ssl-perl (2.069-1) ... Removing libnet-http-perl (6.20-1) ... Removing libnet-ssleay-perl (1.88-3+b1) ... Removing libtry-tiny-perl (0.30-1) ... Removing netbase (6.3) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing perl-openssl-defaults:amd64 (5) ... Removing libhttp-message-perl (6.28-1) ... Removing libencode-locale-perl (1.05-1.1) ... Removing libhttp-date-perl (6.05-1) ... Removing libio-html-perl (1.004-2) ... Removing liblwp-mediatypes-perl (6.04-1) ... Removing libtimedate-perl (2.3300-2) ... Removing liburi-perl (5.08-1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Processing triggers for libc-bin (2.31-13+deb11u7) ... 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'remove', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-diff-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcapture-tiny-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libclass-data-inheritable-perl', 'libcommon-sense-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdeflate0:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu67:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmd0:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sensible-utils', 'sqlite3', 'ucf', 'gbrowse'] 0m37.8s INFO: Running scripts post_remove 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_remove_exceptions'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_remove_exceptions'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--purge', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-diff-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcapture-tiny-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libclass-data-inheritable-perl', 'libcommon-sense-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdeflate0:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu67:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmd0:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sensible-utils', 'sqlite3', 'ucf'] 0m38.6s DUMP: (Reading database ... 6954 files and directories currently installed.) Purging configuration files for apache2 (2.4.56-1~deb11u2) ... dpkg: warning: ignoring request to remove apache2-bin which isn't installed dpkg: warning: ignoring request to remove apache2-data which isn't installed dpkg: warning: ignoring request to remove apache2-utils which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-cachedns-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-http-perl which isn't installed dpkg: warning: ignoring request to remove libanyevent-perl which isn't installed dpkg: warning: ignoring request to remove libapache-dbi-perl which isn't installed Purging configuration files for libapache2-mod-perl2 (2.0.11-4) ... dpkg: warning: ignoring request to remove libapr1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed dpkg: warning: ignoring request to remove libbio-coordinate-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-biofetch-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-gff-perl which isn't installed dpkg: warning: ignoring request to remove libbio-db-seqfeature-perl which isn't installed dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-session-perl which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libcommon-sense-perl which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-pg-perl which isn't installed dpkg: warning: ignoring request to remove libdbd-sqlite3-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-symdump-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-daemon-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-prototype which isn't installed dpkg: warning: ignoring request to remove libjs-scriptaculous which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-xs-perl which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstatistics-descriptive-perl which isn't installed dpkg: warning: ignoring request to remove libstring-approx-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libvm-ec2-perl which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-1) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed Purging configuration files for mailcap (3.69) ... Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.3) ... Purging configuration files for openssl (1.1.1w-0+deb11u1) ... Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed Purging configuration files for procps (2:3.3.17-5) ... Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove sqlite3 which isn't installed Purging configuration files for ucf (3.0043) ... 0m38.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--purge', 'apache2', 'apache2-bin', 'apache2-data', 'apache2-utils', 'bioperl', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'libalgorithm-diff-perl', 'libanyevent-cachedns-perl', 'libanyevent-http-perl', 'libanyevent-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libbio-coordinate-perl', 'libbio-db-biofetch-perl', 'libbio-db-gff-perl', 'libbio-db-seqfeature-perl', 'libbio-graphics-perl', 'libbio-perl-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcapture-tiny-perl', 'libcgi-pm-perl', 'libcgi-session-perl', 'libclass-data-inheritable-perl', 'libcommon-sense-perl', 'libcurl4:amd64', 'libdata-stag-perl', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdeflate0:amd64', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libicu67:amd64', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-prototype', 'libjs-scriptaculous', 'libjson-perl', 'libldap-2.4-2:amd64', 'liblist-moreutils-perl', 'liblist-moreutils-xs-perl', 'liblua5.3-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmd0:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnghttp2-14:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpq5:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-descriptive-perl', 'libstring-approx-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libvm-ec2-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl', 'perl-modules-5.32', 'perl-openssl-defaults:amd64', 'procps', 'readline-common', 'sensible-utils', 'sqlite3', 'ucf'] 0m38.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--purge', 'gbrowse'] 0m38.7s DUMP: (Reading database ... 6751 files and directories currently installed.) Purging configuration files for gbrowse (2.56+dfsg-8) ... 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--purge', 'gbrowse'] 0m38.7s INFO: Running scripts post_purge 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_purge_exceptions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_purge_exceptions'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--purge', '--pending'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--purge', '--pending'] 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--remove', '--pending'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg', '--remove', '--pending'] 0m38.7s INFO: Running scripts post_test 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_test_exceptions'] 0m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'tmp/scripts/post_test_exceptions'] 0m38.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m39.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg-divert', '--list'] 0m39.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'dpkg-divert', '--list'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'clean'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz', 'apt-get', 'clean'] 0m39.1s DEBUG: Recording chroot state 0m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/shm'] 0m40.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/shm'] 0m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/console'] 0m40.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/console'] 0m40.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/ptmx'] 0m40.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/ptmx'] 0m40.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/pts'] 0m40.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/dev/pts'] 0m40.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/proc'] 0m40.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz/proc'] 0m40.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m40.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_9wk7ibz'] 0m40.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_9wk7ibz 0m40.3s INFO: PASS: Upgrading between Debian distributions. 0m40.3s INFO: PASS: All tests. 0m40.3s INFO: piuparts run ends. ret=0 End: 2023-12-26 17:58:21 GMT