Start: 2024-11-16 16:55:00 GMT [bullseye] Package: libbio-samtools-perl Source: libbio-samtools-perl (1.43-3) Version: 1.43-3+b1 Installed-Size: 625 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.32.0-4), perlapi-5.32.0, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Description: Perl interface to SamTools library for DNA sequencing Homepage: https://metacpan.org/release/Bio-SamTools Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl, role::devel-lib, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-3+b1_amd64.deb Size: 198664 MD5sum: 0cf0984b4caefd2fe431d1e62acddeb7 SHA256: 83106c5a63f82f33aa0dfa4e0817325f2e2a0cb7a487c141bbcd5332664a4833 [bullseye-next] Package: libbio-samtools-perl Source: libbio-samtools-perl (1.43-3) Version: 1.43-3+b1 Installed-Size: 625 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.32.0-4), perlapi-5.32.0, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Description: Perl interface to SamTools library for DNA sequencing Homepage: https://metacpan.org/release/Bio-SamTools Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl, role::devel-lib, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-3+b1_amd64.deb Size: 198664 MD5sum: 0cf0984b4caefd2fe431d1e62acddeb7 SHA256: 83106c5a63f82f33aa0dfa4e0817325f2e2a0cb7a487c141bbcd5332664a4833 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt libbio-samtools-perl=1.43-3+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt libbio-samtools-perl=1.43-3+b1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5lgue6ty 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5lgue6ty 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5lgue6ty/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'update'] 0m0.7s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'update'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-yf', 'dist-upgrade'] 0m0.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-yf', 'dist-upgrade'] 0m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.0s DUMP: f58ca9ba0b3223edf5b7797c101a5448 - 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.0s INFO: Running scripts post_setup 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.6s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u11 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u11 install ok installed libc6:amd64 libc6 2.31-13+deb11u11 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m1.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m1.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m1.9s INFO: Running scripts is_testable 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s INFO: Running scripts pre_test 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_test_root_password'] 0m1.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_test_root_password'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 0m2.0s DUMP: Package: libbio-samtools-perl Source: libbio-samtools-perl (1.43-3) Version: 1.43-3+b1 Installed-Size: 625 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.32.0-4), perlapi-5.32.0, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Description-en: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Homepage: https://metacpan.org/release/Bio-SamTools Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl, role::devel-lib, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-3+b1_amd64.deb Size: 198664 MD5sum: 0cf0984b4caefd2fe431d1e62acddeb7 SHA256: 83106c5a63f82f33aa0dfa4e0817325f2e2a0cb7a487c141bbcd5332664a4833 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 0m2.0s INFO: apt-cache knows about the following packages: libbio-samtools-perl 0m2.0s INFO: Running scripts pre_install 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy'] 0m2.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m2.1s DUMP: libbio-samtools-perl: Installed: (none) Candidate: 1.43-3+b1 Version table: 1.43-3+b1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 0m5.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libbio-perl-perl libdata-stag-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.32 perl perl-modules-5.32 Suggested packages: bioperl libxml-sax-expatxs-perl gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl Recommended packages: bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl netbase The following NEW packages will be installed: libbio-perl-perl libbio-samtools-perl libdata-stag-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.32 perl perl-modules-5.32 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 10.6 MB of archives. After this operation, 57.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libbio-perl-perl all 1.7.7-2 [2607 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libbio-samtools-perl amd64 1.43-3+b1 [199 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.6 MB in 2s (4917 kB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../3-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../5-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../6-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../7-libbio-perl-perl_1.7.7-2_all.deb ... Unpacking libbio-perl-perl (1.7.7-2) ... Selecting previously unselected package libbio-samtools-perl. Preparing to unpack .../8-libbio-samtools-perl_1.43-3+b1_amd64.deb ... Unpacking libbio-samtools-perl (1.43-3+b1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libbio-samtools-perl (1.43-3+b1) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 0m5.4s INFO: Running scripts post_install 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_install_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_install_exceptions'] 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m5.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5lgue6ty to bullseye-next 0m5.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m5.8s INFO: Running scripts pre_distupgrade 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'update'] 0m6.7s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://security.debian.org bullseye-security InRelease [27.2 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:7 http://security.debian.org bullseye-security/main amd64 Packages [308 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [199 kB] Fetched 662 kB in 0s (1355 kB/s) Reading package lists... 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'update'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-yf', 'dist-upgrade'] 0m9.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: e2fsprogs libcom-err2 libext2fs2 libgnutls30 libperl5.32 libsepol1 libss2 libssl1.1 libsystemd0 libudev1 logsave perl perl-base perl-modules-5.32 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 25.6 kB of additional disk space will be used. Get:1 http://security.debian.org bullseye-security/main amd64 libperl5.32 amd64 5.32.1-4+deb11u4 [4132 kB] Get:2 http://security.debian.org bullseye-security/main amd64 perl amd64 5.32.1-4+deb11u4 [293 kB] Get:3 http://security.debian.org bullseye-security/main amd64 perl-base amd64 5.32.1-4+deb11u4 [1629 kB] Get:4 http://security.debian.org bullseye-security/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u4 [2824 kB] Get:5 http://security.debian.org bullseye-security/main amd64 libsystemd0 amd64 247.3-7+deb11u6 [377 kB] Get:6 http://security.debian.org bullseye-security/main amd64 logsave amd64 1.46.2-2+deb11u1 [75.0 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libext2fs2 amd64 1.46.2-2+deb11u1 [257 kB] Get:8 http://security.debian.org bullseye-security/main amd64 e2fsprogs amd64 1.46.2-2+deb11u1 [614 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libcom-err2 amd64 1.46.2-2+deb11u1 [74.3 kB] Get:10 http://security.debian.org bullseye-security/main amd64 libgnutls30 amd64 3.7.1-5+deb11u6 [1340 kB] Get:11 http://security.debian.org bullseye-security/main amd64 libsepol1 amd64 3.1-1+deb11u1 [269 kB] Get:12 http://security.debian.org bullseye-security/main amd64 libssl1.1 amd64 1.1.1w-0+deb11u2 [1565 kB] Get:13 http://security.debian.org bullseye-security/main amd64 libudev1 amd64 247.3-7+deb11u6 [169 kB] Get:14 http://security.debian.org bullseye-security/main amd64 libss2 amd64 1.46.2-2+deb11u1 [78.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (32.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../libperl5.32_5.32.1-4+deb11u4_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u4) over (5.32.1-4+deb11u3) ... Preparing to unpack .../perl_5.32.1-4+deb11u4_amd64.deb ... Unpacking perl (5.32.1-4+deb11u4) over (5.32.1-4+deb11u3) ... Preparing to unpack .../perl-base_5.32.1-4+deb11u4_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u4) over (5.32.1-4+deb11u3) ... Setting up perl-base (5.32.1-4+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../perl-modules-5.32_5.32.1-4+deb11u4_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u4) over (5.32.1-4+deb11u3) ... Preparing to unpack .../libsystemd0_247.3-7+deb11u6_amd64.deb ... Unpacking libsystemd0:amd64 (247.3-7+deb11u6) over (247.3-7+deb11u5) ... Setting up libsystemd0:amd64 (247.3-7+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../logsave_1.46.2-2+deb11u1_amd64.deb ... Unpacking logsave (1.46.2-2+deb11u1) over (1.46.2-2) ... Preparing to unpack .../libext2fs2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Setting up libext2fs2:amd64 (1.46.2-2+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.2-2+deb11u1_amd64.deb ... Unpacking e2fsprogs (1.46.2-2+deb11u1) over (1.46.2-2) ... Preparing to unpack .../libcom-err2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Setting up libcom-err2:amd64 (1.46.2-2+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u6_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u6) over (3.7.1-5+deb11u5) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../libsepol1_3.1-1+deb11u1_amd64.deb ... Unpacking libsepol1:amd64 (3.1-1+deb11u1) over (3.1-1) ... Setting up libsepol1:amd64 (3.1-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../libssl1.1_1.1.1w-0+deb11u2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1w-0+deb11u2) over (1.1.1w-0+deb11u1) ... Setting up libssl1.1:amd64 (1.1.1w-0+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../libudev1_247.3-7+deb11u6_amd64.deb ... Unpacking libudev1:amd64 (247.3-7+deb11u6) over (247.3-7+deb11u5) ... Setting up libudev1:amd64 (247.3-7+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Preparing to unpack .../libss2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libss2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u4) ... Setting up libss2:amd64 (1.46.2-2+deb11u1) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u4) ... Setting up logsave (1.46.2-2+deb11u1) ... Setting up e2fsprogs (1.46.2-2+deb11u1) ... Setting up perl (5.32.1-4+deb11u4) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-yf', 'dist-upgrade'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.3s DUMP: b44441d7548b803fa8fe17b86b51ad34 - 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 0m9.4s DUMP: Package: libbio-samtools-perl Source: libbio-samtools-perl (1.43-3) Version: 1.43-3+b1 Installed-Size: 625 Maintainer: Debian Perl Group Architecture: amd64 Depends: perl (>= 5.32.0-4), perlapi-5.32.0, libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3), libbio-perl-perl Enhances: gbrowse, samtools Description-en: Perl interface to SamTools library for DNA sequencing Bio::SamTools provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across large regions. It also provides callback functionality for calling SNPs and performing other base-by-base functions. Most operations are compatible with the BioPerl Bio::SeqFeatureI interface, allowing BAM files to be used as a backend to the GBrowse genome browser application. Description-md5: 73b654c3e7ee8120b5c9b0a3c60da326 Homepage: https://metacpan.org/release/Bio-SamTools Tag: devel::lang:perl, devel::library, implemented-in::c, implemented-in::perl, role::devel-lib, role::shared-lib Section: perl Priority: optional Filename: pool/main/libb/libbio-samtools-perl/libbio-samtools-perl_1.43-3+b1_amd64.deb Size: 198664 MD5sum: 0cf0984b4caefd2fe431d1e62acddeb7 SHA256: 83106c5a63f82f33aa0dfa4e0817325f2e2a0cb7a487c141bbcd5332664a4833 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'show', '--no-all-versions', 'libbio-samtools-perl'] 0m9.4s INFO: apt-cache knows about the following packages: libbio-samtools-perl 0m9.4s INFO: Running scripts pre_install 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_database-server'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_database-server'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_extras'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_extras'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy'] 0m9.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m9.5s DUMP: libbio-samtools-perl: Installed: 1.43-3+b1 Candidate: 1.43-3+b1 Version table: *** 1.43-3+b1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 0m9.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-samtools-perl is already the newest version (1.43-3+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-y', 'install', 'libbio-samtools-perl'] 0m9.7s INFO: Running scripts post_install 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_install_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_install_exceptions'] 0m9.7s INFO: Running scripts post_distupgrade 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_exceptions'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_exceptions'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_zz_backports'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_distupgrade_zz_backports'] 0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m10.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m10.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m10.5s INFO: Running scripts pre_install 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_database-server'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_database-server'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_exceptions'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_extras'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_extras'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy'] 0m10.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m10.6s DUMP: libbio-samtools-perl: Installed: 1.43-3+b1 Candidate: 1.43-3+b1 Version table: *** 1.43-3+b1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-cache', 'policy', 'libbio-samtools-perl'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-y', 'install', 'libbio-samtools-perl=1.43-3+b1'] 0m10.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libbio-samtools-perl is already the newest version (1.43-3+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', '-y', 'install', 'libbio-samtools-perl=1.43-3+b1'] 0m10.7s INFO: Running scripts post_install 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_install_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_install_exceptions'] 0m10.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m11.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m11.2s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m11.3s INFO: /bin converted to /usr/bin by /usr merge 0m11.3s INFO: /lib converted to /usr/lib by /usr merge 0m11.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m11.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m11.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m11.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m11.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m11.3s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m11.3s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m11.3s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m11.3s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m11.3s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m11.3s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m11.3s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m11.3s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m11.3s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m11.3s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m11.3s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m11.3s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m11.3s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m11.3s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m11.3s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m11.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m11.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m11.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m11.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m11.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m11.3s INFO: /sbin converted to /usr/sbin by /usr merge 0m11.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', '-ac', '--ignore-obsolete'] 0m12.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', '-ac', '--ignore-obsolete'] 0m12.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.1s DUMP: 0.15.6 0m12.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.1s INFO: Running adequate version 0.15.6 now. 0m12.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'libbio-samtools-perl'] 0m12.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'libbio-samtools-perl'] 0m12.2s INFO: Running scripts pre_remove 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_exceptions'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/pre_remove_exceptions'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.6s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u11 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.7-2 install ok installed libbio-samtools-perl libbio-samtools-perl 1.43-3+b1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u11 install ok installed libc6:amd64 libc6 2.31-13+deb11u11 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2+deb11u1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2+deb11u1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libio-string-perl libio-string-perl 1.08-3.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u4 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1+deb11u1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2+deb11u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u2 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u6 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u6 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2+deb11u1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u4 install ok installed perl-base perl-base 5.32.1-4+deb11u4 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u4 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'remove', 'libbio-perl-perl', 'libdata-stag-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32', 'libbio-samtools-perl'] 0m14.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libbio-perl-perl libbio-samtools-perl libdata-stag-perl libgdbm-compat4 libgdbm6 libio-string-perl libperl5.32 perl perl-modules-5.32 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. After this operation, 57.5 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9861 files and directories currently installed.) Removing libbio-samtools-perl (1.43-3+b1) ... Removing libbio-perl-perl (1.7.7-2) ... Removing libdata-stag-perl (0.14-2) ... Removing libio-string-perl (1.08-3.1) ... Removing perl (5.32.1-4+deb11u4) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u4) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u4) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'remove', 'libbio-perl-perl', 'libdata-stag-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32', 'libbio-samtools-perl'] 0m14.0s INFO: Running scripts post_remove 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_remove_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_remove_exceptions'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--purge', 'libbio-perl-perl', 'libdata-stag-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32'] 0m14.0s DUMP: dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed (Reading database ... 6677 files and directories currently installed.) Purging configuration files for perl (5.32.1-4+deb11u4) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--purge', 'libbio-perl-perl', 'libdata-stag-perl', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libio-string-perl', 'libperl5.32:amd64', 'perl', 'perl-modules-5.32'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--purge', 'libbio-samtools-perl'] 0m14.0s DUMP: dpkg: warning: ignoring request to remove libbio-samtools-perl which isn't installed 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--purge', 'libbio-samtools-perl'] 0m14.0s INFO: Running scripts post_purge 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_purge_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_purge_exceptions'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--purge', '--pending'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--purge', '--pending'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--remove', '--pending'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg', '--remove', '--pending'] 0m14.0s INFO: Running scripts post_test 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_test_exceptions'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'tmp/scripts/post_test_exceptions'] 0m14.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m14.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg-divert', '--list'] 0m14.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'dpkg-divert', '--list'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'clean'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty', 'apt-get', 'clean'] 0m14.3s DEBUG: Recording chroot state 0m14.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/shm'] 0m14.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/shm'] 0m14.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/console'] 0m14.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/console'] 0m14.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/ptmx'] 0m14.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/ptmx'] 0m14.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/pts'] 0m14.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/dev/pts'] 0m14.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/proc'] 0m14.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty/proc'] 0m14.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m14.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5lgue6ty'] 0m14.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5lgue6ty 0m15.0s INFO: PASS: Upgrading between Debian distributions. 0m15.0s INFO: PASS: All tests. 0m15.0s INFO: piuparts run ends. ret=0 End: 2024-11-16 16:55:15 GMT