Start: 2022-11-12 00:22:32 GMT [bullseye] Package: libgatbcore3 Source: gatb-core Version: 1.4.2+dfsg-6 Installed-Size: 12880 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9) Description: dynamic library of the Genome Analysis Toolbox Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description-md5: 5aa86c97b62a657fd9e2e513992b1d66 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/g/gatb-core/libgatbcore3_1.4.2+dfsg-6_amd64.deb Size: 1765268 MD5sum: 0077fdbafd803c398528af6519884c3f SHA256: 3202f7f1ae5d4340cac253f5e8d8afb43ce5ea7c4bf940cca3788bdcdb197bdc [bullseye-next] Package: libgatbcore3 Source: gatb-core Version: 1.4.2+dfsg-6 Installed-Size: 12880 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9) Description: dynamic library of the Genome Analysis Toolbox Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Description-md5: 5aa86c97b62a657fd9e2e513992b1d66 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/g/gatb-core/libgatbcore3_1.4.2+dfsg-6_amd64.deb Size: 1765268 MD5sum: 0077fdbafd803c398528af6519884c3f SHA256: 3202f7f1ae5d4340cac253f5e8d8afb43ce5ea7c4bf940cca3788bdcdb197bdc Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt libgatbcore3=1.4.2+dfsg-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt libgatbcore3=1.4.2+dfsg-6 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmprascnd2x 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmprascnd2x 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprascnd2x', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmprascnd2x', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprascnd2x/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmprascnd2x/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmprascnd2x/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'update'] 0m2.4s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-yf', 'dist-upgrade'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s DUMP: 4eaa8732b82bf70ae793ce78de14ca10 - 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.1s INFO: Running scripts post_setup 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_forbid_home'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u5 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.12 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u4 install ok installed libc6:amd64 libc6 2.31-13+deb11u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb11u3 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u5 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/is_testable_uninstallable'] 0m4.0s INFO: Running scripts pre_test 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_test_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore3'] 0m4.2s DUMP: Package: libgatbcore3 Source: gatb-core Version: 1.4.2+dfsg-6 Installed-Size: 12880 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9) Description-en: dynamic library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the dynamic library. Description-md5: 5aa86c97b62a657fd9e2e513992b1d66 Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/g/gatb-core/libgatbcore3_1.4.2+dfsg-6_amd64.deb Size: 1765268 MD5sum: 0077fdbafd803c398528af6519884c3f SHA256: 3202f7f1ae5d4340cac253f5e8d8afb43ce5ea7c4bf940cca3788bdcdb197bdc 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore3'] 0m4.2s INFO: apt-cache knows about the following packages: libgatbcore3 0m4.2s INFO: Running scripts pre_install 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy'] 0m4.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.5,o=Debian,a=stable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy', 'libgatbcore3'] 0m4.3s DUMP: libgatbcore3: Installed: (none) Candidate: 1.4.2+dfsg-6 Version table: 1.4.2+dfsg-6 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy', 'libgatbcore3'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-y', 'install', 'libgatbcore3'] 0m5.3s DUMP: Reading package lists... Building dependency tree... The following NEW packages will be installed: libgatbcore3 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1765 kB of archives. After this operation, 13.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libgatbcore3 amd64 1.4.2+dfsg-6 [1765 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1765 kB in 0s (33.1 MB/s) Selecting previously unselected package libgatbcore3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../libgatbcore3_1.4.2+dfsg-6_amd64.deb ... Unpacking libgatbcore3:amd64 (1.4.2+dfsg-6) ... Setting up libgatbcore3:amd64 (1.4.2+dfsg-6) ... Processing triggers for libc-bin (2.31-13+deb11u4) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-y', 'install', 'libgatbcore3'] 0m5.3s INFO: Running scripts post_install 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_install_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_install_exceptions'] 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m5.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmprascnd2x to bullseye-next 0m5.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m5.6s INFO: Running scripts pre_distupgrade 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'update'] 0m6.9s DUMP: Get:1 http://security.debian.org bullseye-security InRelease [48.4 kB] Hit:2 http://deb.debian.org/debian bullseye InRelease Get:3 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [49.3 kB] Get:5 http://security.debian.org bullseye-security/main amd64 Packages [194 kB] Get:6 http://security.debian.org bullseye-security/main Translation-en [123 kB] Get:7 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [14.6 kB] Get:8 http://deb.debian.org/debian bullseye-updates/main Translation-en [7929 B] Get:9 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [78.9 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [54.0 kB] Fetched 614 kB in 1s (988 kB/s) Reading package lists... 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'update'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-yf', 'dist-upgrade'] 0m8.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 tzdata 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3937 kB of archives. After this operation, 10.2 kB disk space will be freed. Get:1 http://deb.debian.org/debian bullseye-updates/main amd64 libc6 amd64 2.31-13+deb11u5 [2825 kB] Get:2 http://deb.debian.org/debian bullseye-updates/main amd64 libc-bin amd64 2.31-13+deb11u5 [828 kB] Get:3 http://deb.debian.org/debian bullseye-updates/main amd64 tzdata all 2021a-1+deb11u8 [284 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3937 kB in 0s (56.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u5_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u5) over (2.31-13+deb11u4) ... Setting up libc6:amd64 (2.31-13+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u5_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u5) over (2.31-13+deb11u4) ... Setting up libc-bin (2.31-13+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Preparing to unpack .../tzdata_2021a-1+deb11u8_all.deb ... Unpacking tzdata (2021a-1+deb11u8) over (2021a-1+deb11u5) ... Setting up tzdata (2021a-1+deb11u8) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 12 00:22:41 UTC 2022. Universal Time is now: Sat Nov 12 00:22:41 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-yf', 'dist-upgrade'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.9s DUMP: 4e71f3ce94a40d210ad1b9286e91233f - 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore3'] 0m9.1s DUMP: Package: libgatbcore3 Source: gatb-core Version: 1.4.2+dfsg-6 Installed-Size: 12880 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9) Description-en: dynamic library of the Genome Analysis Toolbox The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/ . This package contains the dynamic library. Description-md5: 5aa86c97b62a657fd9e2e513992b1d66 Multi-Arch: same Homepage: https://github.com/GATB/gatb-core Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/g/gatb-core/libgatbcore3_1.4.2+dfsg-6_amd64.deb Size: 1765268 MD5sum: 0077fdbafd803c398528af6519884c3f SHA256: 3202f7f1ae5d4340cac253f5e8d8afb43ce5ea7c4bf940cca3788bdcdb197bdc 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'show', '--no-all-versions', 'libgatbcore3'] 0m9.1s INFO: apt-cache knows about the following packages: libgatbcore3 0m9.1s INFO: Running scripts pre_install 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_database-server'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_extras'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy'] 0m9.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=stable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=stable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.5,o=Debian,a=stable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy', 'libgatbcore3'] 0m9.2s DUMP: libgatbcore3: Installed: 1.4.2+dfsg-6 Candidate: 1.4.2+dfsg-6 Version table: *** 1.4.2+dfsg-6 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy', 'libgatbcore3'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-y', 'install', 'libgatbcore3'] 0m9.5s DUMP: Reading package lists... Building dependency tree... Reading state information... libgatbcore3 is already the newest version (1.4.2+dfsg-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-y', 'install', 'libgatbcore3'] 0m9.5s INFO: Running scripts post_install 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_install_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_install_exceptions'] 0m9.5s INFO: Running scripts post_distupgrade 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_zz_backports'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_distupgrade_zz_backports'] 0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m9.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m10.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m10.3s INFO: Running scripts pre_install 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_database-server'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_exceptions'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_extras'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy'] 0m10.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=stable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=stable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.5,o=Debian,a=stable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy', 'libgatbcore3'] 0m10.4s DUMP: libgatbcore3: Installed: 1.4.2+dfsg-6 Candidate: 1.4.2+dfsg-6 Version table: *** 1.4.2+dfsg-6 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-cache', 'policy', 'libgatbcore3'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-y', 'install', 'libgatbcore3=1.4.2+dfsg-6'] 0m10.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libgatbcore3 is already the newest version (1.4.2+dfsg-6). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', '-y', 'install', 'libgatbcore3=1.4.2+dfsg-6'] 0m10.7s INFO: Running scripts post_install 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_install_exceptions'] 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_install_exceptions'] 0m10.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m11.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m11.1s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m11.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprascnd2x', '-ac', '--ignore-obsolete'] 0m12.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmprascnd2x', '-ac', '--ignore-obsolete'] 0m12.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.0s DUMP: 0.15.6 0m12.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.0s INFO: Running adequate version 0.15.6 now. 0m12.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'libgatbcore3'] 0m12.1s DUMP: libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_INT_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => pthread_create libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT64_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_C_S1_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT32_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5P_CLS_DATASET_CREATE_ID_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT8_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT16_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => deflateInit_ libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzerror libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dset_extent libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pcreate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aexists libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_layout libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Fopen libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5check_version libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzbuffer libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Awrite libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzseek libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Acreate2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => deflate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzflush libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dget_space libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Gcreate2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => deflateEnd libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gztell libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aopen libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tinsert libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dread libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => inflate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => inflateInit_ libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_deflate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aget_space libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tset_size libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => pthread_attr_setstacksize libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => inflateEnd libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Adelete libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Fcreate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Screate_simple libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzrewind libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Sselect_hyperslab libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Sget_simple_extent_dims libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dvlen_reclaim libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Lexists libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzprintf libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dopen2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tcopy libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_shuffle libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aread libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzwrite libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzopen libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Sclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5open libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_chunk libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Gopen2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => pthread_join libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzread libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dwrite libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tset_precision libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tcreate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Fclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Gclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dcreate2 0m12.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'libgatbcore3'] 0m12.1s ERROR: WARN: Inadequate results from running adequate! libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_INT_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => pthread_create libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT64_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_C_S1_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT32_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5P_CLS_DATASET_CREATE_ID_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT8_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5T_NATIVE_UINT16_g libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => deflateInit_ libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzerror libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dset_extent libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pcreate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aexists libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_layout libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Fopen libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5check_version libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzbuffer libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Awrite libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzseek libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Acreate2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => deflate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzflush libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dget_space libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Gcreate2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => deflateEnd libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gztell libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aopen libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tinsert libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dread libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => inflate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => inflateInit_ libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_deflate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aget_space libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tset_size libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => pthread_attr_setstacksize libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => inflateEnd libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Adelete libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Fcreate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Screate_simple libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzrewind libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Sselect_hyperslab libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Sget_simple_extent_dims libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dvlen_reclaim libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Lexists libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzprintf libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dopen2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tcopy libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_shuffle libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Aread libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzwrite libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzopen libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Sclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5open libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Pset_chunk libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Gopen2 libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => pthread_join libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => gzread libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dwrite libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tset_precision libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Tcreate libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Fclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Gclose libgatbcore3:amd64: undefined-symbol /usr/lib/x86_64-linux-gnu/libgatbcore.so.3 => H5Dcreate2 0m12.1s ERROR: WARN: Running adequate resulted in inadequate tags found: undefined-symbol 0m12.1s INFO: Running scripts pre_remove 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_exceptions'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/pre_remove_exceptions'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u5 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.12 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u5 install ok installed libc6:amd64 libc6 2.31-13+deb11u5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgatbcore3:amd64 libgatbcore3 1.4.2+dfsg-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u2 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u2 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u2 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u2 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u2 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb11u3 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u8 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'remove', 'libgatbcore3:amd64'] 0m13.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libgatbcore3 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 13.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6667 files and directories currently installed.) Removing libgatbcore3:amd64 (1.4.2+dfsg-6) ... Processing triggers for libc-bin (2.31-13+deb11u5) ... 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'remove', 'libgatbcore3:amd64'] 0m13.4s INFO: Running scripts post_remove 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_remove_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_remove_exceptions'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg', '--purge', 'libgatbcore3:amd64'] 0m13.4s DUMP: dpkg: warning: ignoring request to remove libgatbcore3 which isn't installed 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg', '--purge', 'libgatbcore3:amd64'] 0m13.4s INFO: Running scripts post_purge 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_purge_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_purge_exceptions'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg', '--purge', '--pending'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg', '--purge', '--pending'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg', '--remove', '--pending'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg', '--remove', '--pending'] 0m13.5s INFO: Running scripts post_test 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_test_exceptions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'tmp/scripts/post_test_exceptions'] 0m13.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg-divert', '--list'] 0m13.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'dpkg-divert', '--list'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'clean'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmprascnd2x', 'apt-get', 'clean'] 0m13.8s DEBUG: Recording chroot state 0m14.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/shm'] 0m14.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/shm'] 0m14.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/console'] 0m14.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/console'] 0m14.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/ptmx'] 0m14.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/ptmx'] 0m14.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/pts'] 0m14.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/dev/pts'] 0m14.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/proc'] 0m14.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmprascnd2x/proc'] 0m14.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m14.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmprascnd2x'] 0m14.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmprascnd2x 0m14.9s INFO: PASS: Upgrading between Debian distributions. 0m14.9s INFO: PASS: All tests. 0m14.9s INFO: piuparts run ends. ret=0 End: 2022-11-12 00:22:47 GMT