Start: 2024-10-13 16:39:49 GMT [bullseye] Package: pizzly Version: 0.37.3+ds-5 Installed-Size: 876 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3, kallisto Recommends: python3-h5py Description: Identifies gene fusions in RNA sequencing data Homepage: https://github.com/pmelsted/pizzly Description-md5: 723b171e9f8a4d57160db0ec1824e0c4 Section: science Priority: optional Filename: pool/main/p/pizzly/pizzly_0.37.3+ds-5_amd64.deb Size: 294288 MD5sum: 25f5545acd01e39db9ec0a1b93879f80 SHA256: 4fb9c6a54ecc3b00519230bbf1f1667ea309693d9a60243ab71670c6ff8457a5 [bullseye-next] Package: pizzly Version: 0.37.3+ds-5 Installed-Size: 876 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3, kallisto Recommends: python3-h5py Description: Identifies gene fusions in RNA sequencing data Homepage: https://github.com/pmelsted/pizzly Description-md5: 723b171e9f8a4d57160db0ec1824e0c4 Section: science Priority: optional Filename: pool/main/p/pizzly/pizzly_0.37.3+ds-5_amd64.deb Size: 294288 MD5sum: 25f5545acd01e39db9ec0a1b93879f80 SHA256: 4fb9c6a54ecc3b00519230bbf1f1667ea309693d9a60243ab71670c6ff8457a5 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt pizzly=0.37.3+ds-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt pizzly=0.37.3+ds-5 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp0yo5ts6b 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp0yo5ts6b 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp0yo5ts6b/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'update'] 0m1.0s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'update'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-yf', 'dist-upgrade'] 0m1.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-yf', 'dist-upgrade'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.5s DUMP: f58ca9ba0b3223edf5b7797c101a5448 - 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.5s INFO: Running scripts post_setup 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_dummy_users'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_dummy_users'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_forbid_home'] 0m2.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_forbid_home'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_minimize'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_minimize'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_zz_backports'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_setup_zz_backports'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u11 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u11 install ok installed libc6:amd64 libc6 2.31-13+deb11u11 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m2.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m2.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m2.9s INFO: Running scripts is_testable 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/is_testable_uninstallable'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/is_testable_uninstallable'] 0m2.9s INFO: Running scripts pre_test 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_test_exceptions'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_test_exceptions'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_test_root_password'] 0m3.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_test_root_password'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'show', '--no-all-versions', 'pizzly'] 0m3.2s DUMP: Package: pizzly Version: 0.37.3+ds-5 Installed-Size: 876 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3, kallisto Recommends: python3-h5py Description-en: Identifies gene fusions in RNA sequencing data For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations. . Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow. Description-md5: 723b171e9f8a4d57160db0ec1824e0c4 Homepage: https://github.com/pmelsted/pizzly Section: science Priority: optional Filename: pool/main/p/pizzly/pizzly_0.37.3+ds-5_amd64.deb Size: 294288 MD5sum: 25f5545acd01e39db9ec0a1b93879f80 SHA256: 4fb9c6a54ecc3b00519230bbf1f1667ea309693d9a60243ab71670c6ff8457a5 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'show', '--no-all-versions', 'pizzly'] 0m3.2s INFO: apt-cache knows about the following packages: pizzly 0m3.2s INFO: Running scripts pre_install 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_database-server'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_database-server'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_extras'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_extras'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy'] 0m3.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy', 'pizzly'] 0m3.3s DUMP: pizzly: Installed: (none) Candidate: 0.37.3+ds-5 Version table: 0.37.3+ds-5 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy', 'pizzly'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-y', 'install', 'pizzly'] 0m7.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: kallisto libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libhts3 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 media-types python3 python3-minimal python3.9 python3.9-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: ca-certificates libldap-common libgpm2 publicsuffix libsasl2-modules python3-h5py The following NEW packages will be installed: kallisto libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libhts3 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 media-types pizzly python3 python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 27 newly installed, 0 to remove and 0 not upgraded. Need to get 8739 kB of archives. After this operation, 28.8 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2+deb11u1 [156 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u13 [344 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 kallisto amd64 0.46.2+dfsg-2 [242 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 pizzly amd64 0.37.3+ds-5 [294 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8739 kB in 0s (31.6 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6968 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7406 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../01-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../02-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../03-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../04-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../05-libnghttp2-14_1.43.0-1+deb11u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../06-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../07-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... 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Setting up media-types (4.0.0) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libssh2-1:amd64 (1.9.0-2+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u13) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libhts3:amd64 (1.11-4) ... Setting up kallisto (0.46.2+dfsg-2) ... Setting up python3.9 (3.9.2-1) ... Setting up python3 (3.9.2-3) ... Setting up pizzly (0.37.3+ds-5) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-y', 'install', 'pizzly'] 0m7.7s INFO: Running scripts post_install 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_install_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_install_exceptions'] 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m8.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp0yo5ts6b to bullseye-next 0m8.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m8.0s INFO: Running scripts pre_distupgrade 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'update'] 0m9.3s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://security.debian.org bullseye-security InRelease [27.2 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://security.debian.org bullseye-security/main amd64 Packages [302 kB] Get:6 http://security.debian.org bullseye-security/main Translation-en [194 kB] Get:7 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:8 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Fetched 651 kB in 1s (928 kB/s) Reading package lists... 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'update'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-yf', 'dist-upgrade'] 0m10.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: e2fsprogs libcom-err2 libexpat1 libext2fs2 libgnutls30 libnghttp2-14 libsqlite3-0 libss2 libsystemd0 libudev1 logsave 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3957 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://security.debian.org bullseye-security/main amd64 libsystemd0 amd64 247.3-7+deb11u6 [377 kB] Get:2 http://security.debian.org bullseye-security/main amd64 logsave amd64 1.46.2-2+deb11u1 [75.0 kB] Get:3 http://security.debian.org bullseye-security/main amd64 libext2fs2 amd64 1.46.2-2+deb11u1 [257 kB] Get:4 http://security.debian.org bullseye-security/main amd64 e2fsprogs amd64 1.46.2-2+deb11u1 [614 kB] Get:5 http://security.debian.org bullseye-security/main amd64 libcom-err2 amd64 1.46.2-2+deb11u1 [74.3 kB] Get:6 http://security.debian.org bullseye-security/main amd64 libgnutls30 amd64 3.7.1-5+deb11u6 [1340 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libudev1 amd64 247.3-7+deb11u6 [169 kB] Get:8 http://security.debian.org bullseye-security/main amd64 libexpat1 amd64 2.2.10-2+deb11u6 [99.0 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u2 [77.0 kB] Get:10 http://security.debian.org bullseye-security/main amd64 libsqlite3-0 amd64 3.34.1-3+deb11u1 [797 kB] Get:11 http://security.debian.org bullseye-security/main amd64 libss2 amd64 1.46.2-2+deb11u1 [78.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3957 kB in 0s (38.1 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7538 files and directories currently installed.) Preparing to unpack .../libudev1_247.3-7+deb11u6_amd64.deb ... Unpacking libudev1:amd64 (247.3-7+deb11u6) over (247.3-7+deb11u5) ... Setting up libudev1:amd64 (247.3-7+deb11u6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7538 files and directories currently installed.) Preparing to unpack .../libexpat1_2.2.10-2+deb11u6_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u6) over (2.2.10-2+deb11u5) ... Preparing to unpack .../libnghttp2-14_1.43.0-1+deb11u2_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u2) over (1.43.0-1+deb11u1) ... Preparing to unpack .../libsqlite3-0_3.34.1-3+deb11u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3+deb11u1) over (3.34.1-3) ... Preparing to unpack .../libss2_1.46.2-2+deb11u1_amd64.deb ... Unpacking libss2:amd64 (1.46.2-2+deb11u1) over (1.46.2-2) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u6) ... Setting up libsqlite3-0:amd64 (3.34.1-3+deb11u1) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u2) ... Setting up libss2:amd64 (1.46.2-2+deb11u1) ... Setting up logsave (1.46.2-2+deb11u1) ... Setting up e2fsprogs (1.46.2-2+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-yf', 'dist-upgrade'] 0m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.2s DUMP: 9959118f467fd0789cd877a07a698e84 - 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'show', '--no-all-versions', 'pizzly'] 0m11.3s DUMP: Package: pizzly Version: 0.37.3+ds-5 Installed-Size: 876 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4), python3, kallisto Recommends: python3-h5py Description-en: Identifies gene fusions in RNA sequencing data For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations. . Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow. Description-md5: 723b171e9f8a4d57160db0ec1824e0c4 Homepage: https://github.com/pmelsted/pizzly Section: science Priority: optional Filename: pool/main/p/pizzly/pizzly_0.37.3+ds-5_amd64.deb Size: 294288 MD5sum: 25f5545acd01e39db9ec0a1b93879f80 SHA256: 4fb9c6a54ecc3b00519230bbf1f1667ea309693d9a60243ab71670c6ff8457a5 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'show', '--no-all-versions', 'pizzly'] 0m11.3s INFO: apt-cache knows about the following packages: pizzly 0m11.3s INFO: Running scripts pre_install 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_database-server'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_database-server'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_exceptions'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_exceptions'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_extras'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_extras'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy'] 0m11.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy', 'pizzly'] 0m11.5s DUMP: pizzly: Installed: 0.37.3+ds-5 Candidate: 0.37.3+ds-5 Version table: *** 0.37.3+ds-5 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy', 'pizzly'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-y', 'install', 'pizzly'] 0m11.8s DUMP: Reading package lists... Building dependency tree... Reading state information... pizzly is already the newest version (0.37.3+ds-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-y', 'install', 'pizzly'] 0m11.8s INFO: Running scripts post_install 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_install_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_install_exceptions'] 0m11.8s INFO: Running scripts post_distupgrade 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_exceptions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_zz_backports'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_distupgrade_zz_backports'] 0m11.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m12.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m12.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m13.0s INFO: Running scripts pre_install 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_database-server'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_database-server'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_exceptions'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_exceptions'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_extras'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_extras'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy'] 0m13.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.11,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy', 'pizzly'] 0m13.1s DUMP: pizzly: Installed: 0.37.3+ds-5 Candidate: 0.37.3+ds-5 Version table: *** 0.37.3+ds-5 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-cache', 'policy', 'pizzly'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-y', 'install', 'pizzly=0.37.3+ds-5'] 0m13.4s DUMP: Reading package lists... Building dependency tree... Reading state information... pizzly is already the newest version (0.37.3+ds-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', '-y', 'install', 'pizzly=0.37.3+ds-5'] 0m13.4s INFO: Running scripts post_install 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_install_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_install_exceptions'] 0m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m13.9s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m13.9s INFO: /bin converted to /usr/bin by /usr merge 0m13.9s INFO: /lib converted to /usr/lib by /usr merge 0m13.9s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m13.9s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m13.9s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m13.9s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m13.9s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m13.9s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m13.9s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m13.9s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m13.9s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m13.9s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m13.9s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m13.9s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m13.9s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m13.9s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m13.9s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m13.9s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m13.9s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m13.9s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m13.9s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m13.9s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m13.9s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m13.9s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m13.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m13.9s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m13.9s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m13.9s INFO: /sbin converted to /usr/sbin by /usr merge 0m14.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', '-ac', '--ignore-obsolete'] 0m14.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', '-ac', '--ignore-obsolete'] 0m14.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.9s DUMP: 0.15.6 0m14.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.9s INFO: Running adequate version 0.15.6 now. 0m14.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'pizzly'] 0m15.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'pizzly'] 0m15.1s INFO: Running scripts pre_remove 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/pre_remove_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m16.9s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u11 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2+deb11u1 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed kallisto kallisto 0.46.2+dfsg-2 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u11 install ok installed libc6:amd64 libc6 2.31-13+deb11u11 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2+deb11u1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+deb11u13 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u6 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2+deb11u1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u5 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libhts3:amd64 libhts3 1.11-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u5 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2+deb11u1 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2+deb11u1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u6 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u6 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2+deb11u1 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed pizzly pizzly 0.37.3+ds-5 install ok installed python3 python3 3.9.2-3 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'remove', 'kallisto', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'pizzly'] 0m17.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: kallisto libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libhts3 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 media-types pizzly python3 python3-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 0 newly installed, 27 to remove and 0 not upgraded. After this operation, 28.8 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7538 files and directories currently installed.) Removing pizzly (0.37.3+ds-5) ... Removing kallisto (0.46.2+dfsg-2) ... Removing libhts3:amd64 (1.11-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u13) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libdeflate0:amd64 (1.7-1) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u6) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u2) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsqlite3-0:amd64 (3.34.1-3+deb11u1) ... Removing libssh2-1:amd64 (1.9.0-2+deb11u1) ... Removing media-types (4.0.0) ... Removing readline-common (8.1-1) ... Processing triggers for libc-bin (2.31-13+deb11u11) ... 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'remove', 'kallisto', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'pizzly'] 0m17.7s INFO: Running scripts post_remove 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_remove_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_remove_exceptions'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--purge', 'kallisto', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m17.8s DUMP: dpkg: warning: ignoring request to remove kallisto which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed (Reading database ... 6677 files and directories currently installed.) Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for media-types (4.0.0) ... Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.1-1) ... 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--purge', 'kallisto', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libhts3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'media-types', 'python3', 'python3-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--purge', 'pizzly'] 0m17.8s DUMP: dpkg: warning: ignoring request to remove pizzly which isn't installed 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--purge', 'pizzly'] 0m17.8s INFO: Running scripts post_purge 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_purge_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_purge_exceptions'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--purge', '--pending'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--purge', '--pending'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--remove', '--pending'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg', '--remove', '--pending'] 0m17.8s INFO: Running scripts post_test 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_test_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'tmp/scripts/post_test_exceptions'] 0m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m18.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg-divert', '--list'] 0m18.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'dpkg-divert', '--list'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'clean'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b', 'apt-get', 'clean'] 0m18.4s DEBUG: Recording chroot state 0m19.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/shm'] 0m19.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/shm'] 0m19.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/console'] 0m19.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/console'] 0m19.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/ptmx'] 0m19.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/ptmx'] 0m19.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/pts'] 0m19.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/dev/pts'] 0m19.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/proc'] 0m19.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b/proc'] 0m19.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m19.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp0yo5ts6b'] 0m19.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp0yo5ts6b 0m19.6s INFO: PASS: Upgrading between Debian distributions. 0m19.6s INFO: PASS: All tests. 0m19.6s INFO: piuparts run ends. ret=0 End: 2024-10-13 16:40:09 GMT