Start: 2024-01-19 16:40:41 GMT [bullseye] Package: q2-dada2 Version: 2020.11.1-3 Installed-Size: 729 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2, qiime, q2-types, python3-biom-format, python3-skbio Description: QIIME 2 plugin to work with adapters in sequence data Homepage: https://qiime2.org/ Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2020.11.1-3_amd64.deb Size: 394216 MD5sum: 6bafdf5ab6a7a54ff2e8fe740aee7e93 SHA256: daeba909aca8f7686033764e5b080277b818ffbc46c229fd36d466e7a718a81c [bullseye-next] Package: q2-dada2 Version: 2020.11.1-3 Installed-Size: 729 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2, qiime, q2-types, python3-biom-format, python3-skbio Description: QIIME 2 plugin to work with adapters in sequence data Homepage: https://qiime2.org/ Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2020.11.1-3_amd64.deb Size: 394216 MD5sum: 6bafdf5ab6a7a54ff2e8fe740aee7e93 SHA256: daeba909aca8f7686033764e5b080277b818ffbc46c229fd36d466e7a718a81c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt q2-dada2=2020.11.1-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt q2-dada2=2020.11.1-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpb7y49ph7 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpb7y49ph7 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpb7y49ph7/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'update'] 0m3.2s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'update'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s DUMP: cd994be14815166bf41ad7cebd6f56fc - 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s INFO: Running scripts post_setup 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_dummy_users'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_forbid_home'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u6 install ok installed libc6:amd64 libc6 2.31-13+deb11u6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u10 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_test_root_password'] 0m5.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_test_root_password'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 0m6.1s DUMP: Package: q2-dada2 Version: 2020.11.1-3 Installed-Size: 729 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2, qiime, q2-types, python3-biom-format, python3-skbio Description-en: QIIME 2 plugin to work with adapters in sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. . This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses. Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2020.11.1-3_amd64.deb Size: 394216 MD5sum: 6bafdf5ab6a7a54ff2e8fe740aee7e93 SHA256: daeba909aca8f7686033764e5b080277b818ffbc46c229fd36d466e7a718a81c 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 0m6.1s INFO: apt-cache knows about the following packages: q2-dada2 0m6.1s INFO: Running scripts pre_install 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy'] 0m6.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy', 'q2-dada2'] 0m6.3s DUMP: q2-dada2: Installed: (none) Candidate: 2020.11.1-3 Version table: 2020.11.1-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy', 'q2-dada2'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-y', 'install', 'q2-dada2'] 1m36.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx libaec0 libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libice6 libicu67 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblsan0 liblzf1 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev libopenblas-base libopenblas0 libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssw0 libstdc++-10-dev libsz2 libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler mailcap media-types mime-support openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-assertthat r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common sensible-utils ttf-bitstream-vera ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: cython-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc manpages-dev gdbm-l10n libjs-jquery-ui-docs liblcms2-utils libstdc++-10-doc libtbb-doc tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-biom-format-doc python-cycler-doc python-future-doc python-h5py-doc python-ipython-doc python-lockfile-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-natsort-doc python-networkx-doc gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python3-pil-dbg python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc python3-dap python-sklearn-doc python3.9-venv python3.9-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-all r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-cran-codetools r-bioc-biocstyle r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-cran-rmarkdown r-bioc-hdf5array r-bioc-genefilter r-bioc-delayedmatrixstats r-cran-runit r-bioc-rtracklayer r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-graph r-bioc-biomart r-bioc-rhdf5 r-cran-covr r-cran-htmlwidgets r-cran-prettycode r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-viridis r-cran-unitizer r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-rpart r-cran-sf r-cran-svglite r-cran-dbi r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-magick r-cran-httr r-cran-curl r-cran-getopt r-cran-base64enc r-cran-bit64 r-cran-cpp11 r-cran-doparallel r-cran-iterators r-cran-itertools r-cran-inline r-cran-xml r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-mockery r-cran-usethis r-cran-bench r-cran-blob r-cran-formattable r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-zeallot readline-doc Recommended packages: python3-dev gcc manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common libgpm2 publicsuffix libsasl2-modules bzip2 file xz-utils netbase psmisc python3-pytest python3-simplejson python3-psutil python3-tk python3-gdal python3-pydot python3-pygraphviz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile g++ | c++-compiler python3-nose q2cli q2templates q2-cutadapt q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table r-recommended r-base-dev r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-annotate r-cran-cliapp r-cran-mockery r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr r-cran-quantreg r-cran-xml2 r-cran-lubridate r-cran-domc r-cran-abind r-cran-curl r-cran-rmarkdown r-cran-mockr r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-generics r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx libaec0 libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libice6 libicu67 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblsan0 liblzf1 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev libopenblas-base libopenblas0 libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssw0 libstdc++-10-dev libsz2 libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler mailcap media-types mime-support openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-assertthat r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common sensible-utils ttf-bitstream-vera ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. Need to get 240 MB of archives. After this operation, 813 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u2 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u2 [4106 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u2 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:42 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u6 [276 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.197-1 [1668 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u6 [2360 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:59 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u1 [772 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u9 [347 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:88 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libopenblas0-pthread amd64 0.3.13+ds-3+deb11u1 [6016 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libopenblas0 amd64 0.3.13+ds-3+deb11u1 [32.9 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libopenblas-base amd64 0.3.13+ds-3+deb11u1 [31.7 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libtbb-dev amd64 2020.3-1 [313 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u4 [290 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libyajl2 amd64 2.1.0-3+deb11u2 [24.2 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:131 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 python3-backcall all 0.2.0-1 [10.7 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 python3-future all 0.18.2-5 [349 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 python3-bibtexparser all 1.1.0+ds-3 [31.5 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 python3-h5py-serial amd64 2.10.0-9+b2 [655 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 python3-h5py all 2.10.0-9 [11.4 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:152 http://deb.debian.org/debian bullseye/main amd64 python3-biom-format amd64 2.1.10-1+b1 [132 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 python3-msgpack amd64 1.0.0-6+b1 [69.2 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 python3-cachecontrol all 0.12.6-1 [16.4 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:161 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 python3-hdmedians amd64 0.14.1-1+b2 [103 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 python3-ijson amd64 3.1.4-1 [36.6 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 python3-parso all 0.8.1-1 [65.9 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 python3-jedi all 0.18.0-1 [620 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 python3-ptyprocess all 0.7.0-1 [13.6 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 python3-pexpect all 4.8.0-2 [54.9 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 python3-pickleshare all 0.7.5-3 [7604 B] Get:169 http://deb.debian.org/debian bullseye/main amd64 python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 python3-prompt-toolkit all 3.0.14-1 [258 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 python3-ipython all 7.20.0-1+deb11u1 [517 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 python3-lockfile all 1:0.12.2-2.2 [17.3 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 python3-natsort all 7.1.0-1 [37.5 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn-lib amd64 0.23.2-5 [1884 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn all 0.23.2-5 [1818 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 python3-skbio amd64 0.5.6-4 [647 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 python3-tzlocal all 2.1-1 [18.5 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 r-bioc-s4vectors amd64 0.28.1-1 [2027 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 r-bioc-iranges amd64 2.24.1-1 [2202 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get:196 http://deb.debian.org/debian bullseye/main amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get:199 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 r-cran-bh all 1.74.0-1 [5196 B] Get:257 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocparallel amd64 1.24.1-1 [1143 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:261 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1856 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1024 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rsamtools amd64 2.6.0-1 [3659 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biobase amd64 2.50.0-1 [2229 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1798 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2196 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 r-cran-hwriter all 1.3.2-4 [162 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 r-cran-png amd64 0.1-7-4 [40.7 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 r-cran-jpeg amd64 0.1-8.1-1+b1 [30.3 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 r-cran-latticeextra all 0.6-29-3 [2192 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 r-bioc-shortread amd64 1.48.0-2 [5134 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcppparallel amd64 5.0.2+dfsg-4 [115 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 r-bioc-dada2 amd64 1.18.0+dfsg-1 [1882 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 qiime all 2020.11.1-1 [150 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 q2-types all 2020.11.1-1 [59.3 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 q2-dada2 amd64 2020.11.1-3 [394 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 240 MB in 15s (15.7 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6666 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u2) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8931 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. 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Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../09-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../10-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../11-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9393 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package cython3. Preparing to unpack .../008-cython3_0.29.21-3+b1_amd64.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../009-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../010-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../011-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../012-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../013-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../014-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../015-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../016-fontconfig_2.13.1-4.2_amd64.deb ... Unpacking fontconfig (2.13.1-4.2) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../017-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../018-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... Selecting previously unselected package libasan6:amd64. Preparing to unpack .../019-libasan6_10.2.1-6_amd64.deb ... Unpacking libasan6:amd64 (10.2.1-6) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../020-libatomic1_10.2.1-6_amd64.deb ... Unpacking libatomic1:amd64 (10.2.1-6) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../021-libblas3_3.9.0-3+deb11u1_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3+deb11u1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../022-libgomp1_10.2.1-6_amd64.deb ... Unpacking libgomp1:amd64 (10.2.1-6) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../023-libitm1_10.2.1-6_amd64.deb ... Unpacking libitm1:amd64 (10.2.1-6) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../024-liblsan0_10.2.1-6_amd64.deb ... Unpacking liblsan0:amd64 (10.2.1-6) ... Selecting previously unselected package libtsan0:amd64. Preparing to unpack .../025-libtsan0_10.2.1-6_amd64.deb ... Unpacking libtsan0:amd64 (10.2.1-6) ... Selecting previously unselected package libubsan1:amd64. Preparing to unpack .../026-libubsan1_10.2.1-6_amd64.deb ... Unpacking libubsan1:amd64 (10.2.1-6) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../027-libquadmath0_10.2.1-6_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.1-6) ... Selecting previously unselected package libgcc-10-dev:amd64. Preparing to unpack .../028-libgcc-10-dev_10.2.1-6_amd64.deb ... Unpacking libgcc-10-dev:amd64 (10.2.1-6) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../029-libc-dev-bin_2.31-13+deb11u6_amd64.deb ... Unpacking libc-dev-bin (2.31-13+deb11u6) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../030-linux-libc-dev_5.10.197-1_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.10.197-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../031-libcrypt-dev_1%3a4.4.18-4_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.18-4) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../032-libtirpc-dev_1.3.1-1+deb11u1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../033-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../034-libc6-dev_2.31-13+deb11u6_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-13+deb11u6) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../035-libstdc++-10-dev_10.2.1-6_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-6) ... Selecting previously unselected package libboost1.74-dev:amd64. Preparing to unpack .../036-libboost1.74-dev_1.74.0-9_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../037-libboost-dev_1.74.0.3_amd64.deb ... Unpacking libboost-dev:amd64 (1.74.0.3) ... Selecting previously unselected package libmd0:amd64. 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Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.6-1) ... Setting up unzip (6.0-26+deb11u1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u2) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libtbb2:amd64 (2020.3-1) ... Setting up libyajl2:amd64 (2.1.0-3+deb11u2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up linux-libc-dev:amd64 (5.10.197-1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libasan6:amd64 (10.2.1-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up zip (3.0-12) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libatomic1:amd64 (10.2.1-6) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libubsan1:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u4) ... Setting up libtbb-dev:amd64 (2020.3-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libc-dev-bin (2.31-13+deb11u6) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up readline-common (8.1-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liblsan0:amd64 (10.2.1-6) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libopenblas0-pthread:amd64 (0.3.13+ds-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u2) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libopenblas0:amd64 (0.3.13+ds-3+deb11u1) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u9) ... Setting up libc6-dev:amd64 (2.31-13+deb11u6) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libopenblas-base:amd64 (0.3.13+ds-3+deb11u1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up perl (5.32.1-4+deb11u2) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up mime-support (3.66) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up python3 (3.9.2-3) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up python3-tz (2021.1-1) ... Setting up python3-natsort (7.1.0-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-wcwidth (0.1.9+dfsg1-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-pickleshare (0.7.5-3) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-msgpack (1.0.0-6+b1) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up python3-tzlocal (2.1-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up python3-ptyprocess (0.7.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-prompt-toolkit (3.0.14-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-backcall (0.2.0-1) ... Setting up python3-ijson (3.1.4-1) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up python3-parso (0.8.1-1) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.5+ds-2) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-pexpect (4.8.0-2) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up r-cran-farver (2.0.3-1+b1) ... Setting up r-cran-formatr (1.7-2) ... Setting up python3-hdmedians (0.14.1-1+b2) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up python3-traitlets (5.0.5-1) ... Setting up python3-cachecontrol (0.12.6-1) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up r-cran-jpeg (0.1-8.1-1+b1) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up r-cran-rcppparallel (5.0.2+dfsg-4) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up python3-scipy (1.6.0-2) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up littler (0.3.12-1) ... Setting up python3-jedi (0.18.0-1) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-praise (1.0.0-4) ... Setting up r-cran-digest (0.6.27-1) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up python3-sklearn-lib:amd64 (0.23.2-5) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up r-cran-hwriter (1.3.2-4) ... Setting up python3-ipython (7.20.0-1+deb11u1) ... Setting up r-cran-plyr (1.8.6-2) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up python3-h5py (2.10.0-9) ... Setting up python3-sklearn (0.23.2-5) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up python3-bibtexparser (1.1.0+ds-3) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-latticeextra (0.6-29-3) ... Setting up qiime (2020.11.1-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-biom-format (2.1.10-1+b1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up python3-skbio (0.5.6-4) ... Setting up q2-types (2020.11.1-1) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up r-bioc-shortread (1.48.0-2) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-dada2 (1.18.0+dfsg-1) ... Setting up q2-dada2 (2020.11.1-3) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-y', 'install', 'q2-dada2'] 1m36.4s INFO: Running scripts post_install 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_install_exceptions'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_install_exceptions'] 1m36.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m38.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m38.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpb7y49ph7 to bullseye-next 1m38.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 1m38.4s INFO: Running scripts pre_distupgrade 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_exceptions'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_exceptions'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m38.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'update'] 1m40.3s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://security.debian.org bullseye-security InRelease [48.4 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:7 http://security.debian.org bullseye-security/main amd64 Packages [265 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [171 kB] Get:9 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [136 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [83.0 kB] Fetched 831 kB in 1s (820 kB/s) Reading package lists... 1m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'update'] 1m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-yf', 'dist-upgrade'] 1m46.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev libcurl4 libglib2.0-0 libgnutls30 libjs-jquery-ui libnghttp2-14 libperl5.32 libtiff5 libx11-6 libx11-data linux-libc-dev perl perl-base perl-modules-5.32 tzdata 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 21.9 MB of archives. After this operation, 41.0 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:2 http://security.debian.org bullseye-security/main amd64 libc6-dev amd64 2.31-13+deb11u7 [2361 kB] Get:3 http://security.debian.org bullseye-security/main amd64 libc-dev-bin amd64 2.31-13+deb11u7 [276 kB] Get:4 http://security.debian.org bullseye-security/main amd64 linux-libc-dev amd64 5.10.205-2 [1690 kB] Get:5 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 perl-base amd64 5.32.1-4+deb11u3 [1628 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libc6 amd64 2.31-13+deb11u7 [2823 kB] Get:8 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libc-bin amd64 2.31-13+deb11u7 [829 kB] Get:10 http://security.debian.org bullseye-security/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:11 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libgnutls30 amd64 3.7.1-5+deb11u4 [1340 kB] Get:12 http://security.debian.org bullseye-security/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:13 http://security.debian.org bullseye-security/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:14 http://security.debian.org bullseye-security/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:15 http://security.debian.org bullseye-security/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:16 http://deb.debian.org/debian bullseye-updates/main amd64 tzdata all 2021a-1+deb11u11 [287 kB] Get:17 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:18 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.9 MB in 0s (117 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50010 files and directories currently installed.) Preparing to unpack .../libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Preparing to unpack .../perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Preparing to unpack .../perl-base_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Setting up perl-base (5.32.1-4+deb11u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50010 files and directories currently installed.) Preparing to unpack .../perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Preparing to unpack .../libc6-dev_2.31-13+deb11u7_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-13+deb11u7) over (2.31-13+deb11u6) ... Preparing to unpack .../libc-dev-bin_2.31-13+deb11u7_amd64.deb ... Unpacking libc-dev-bin (2.31-13+deb11u7) over (2.31-13+deb11u6) ... Preparing to unpack .../linux-libc-dev_5.10.205-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.10.205-2) over (5.10.197-1) ... Preparing to unpack .../libc6_2.31-13+deb11u7_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u7) over (2.31-13+deb11u6) ... Setting up libc6:amd64 (2.31-13+deb11u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50010 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u7_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u7) over (2.31-13+deb11u6) ... Setting up libc-bin (2.31-13+deb11u7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50010 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u4) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50010 files and directories currently installed.) Preparing to unpack .../0-tzdata_2021a-1+deb11u11_all.deb ... Unpacking tzdata (2021a-1+deb11u11) over (2021a-1+deb11u10) ... Preparing to unpack .../1-libnghttp2-14_1.43.0-1+deb11u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u1) over (1.43.0-1) ... Preparing to unpack .../2-libcurl4_7.74.0-1.3+deb11u11_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.3+deb11u11) over (7.74.0-1.3+deb11u9) ... Preparing to unpack .../3-libglib2.0-0_2.66.8-1+deb11u1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.66.8-1+deb11u1) over (2.66.8-1) ... Preparing to unpack .../4-libjs-jquery-ui_1.12.1+dfsg-8+deb11u2_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) over (1.12.1+dfsg-8+deb11u1) ... Preparing to unpack .../5-libtiff5_4.2.0-1+deb11u5_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u5) over (4.2.0-1+deb11u4) ... Preparing to unpack .../6-libx11-data_2%3a1.7.2-1+deb11u2_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u2) over (2:1.7.2-1+deb11u1) ... Preparing to unpack .../7-libx11-6_2%3a1.7.2-1+deb11u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1+deb11u2) over (2:1.7.2-1+deb11u1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... No schema files found: doing nothing. Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up linux-libc-dev:amd64 (5.10.205-2) ... Setting up tzdata (2021a-1+deb11u11) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 19 16:42:27 UTC 2024. Universal Time is now: Fri Jan 19 16:42:27 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libc-dev-bin (2.31-13+deb11u7) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libc6-dev:amd64 (2.31-13+deb11u7) ... Processing triggers for libc-bin (2.31-13+deb11u7) ... 1m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-yf', 'dist-upgrade'] 1m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m46.2s DUMP: c403ce777da6da3da1c21e53eb95d132 - 1m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 1m46.5s DUMP: Package: q2-dada2 Version: 2020.11.1-3 Installed-Size: 729 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2, qiime, q2-types, python3-biom-format, python3-skbio Description-en: QIIME 2 plugin to work with adapters in sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. . This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses. Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2020.11.1-3_amd64.deb Size: 394216 MD5sum: 6bafdf5ab6a7a54ff2e8fe740aee7e93 SHA256: daeba909aca8f7686033764e5b080277b818ffbc46c229fd36d466e7a718a81c 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 1m46.5s INFO: apt-cache knows about the following packages: q2-dada2 1m46.5s INFO: Running scripts pre_install 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_database-server'] 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_database-server'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_exceptions'] 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_exceptions'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_extras'] 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_extras'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture'] 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy'] 1m46.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy'] 1m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy', 'q2-dada2'] 1m46.6s DUMP: q2-dada2: Installed: 2020.11.1-3 Candidate: 2020.11.1-3 Version table: *** 2020.11.1-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 1m46.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy', 'q2-dada2'] 1m46.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-y', 'install', 'q2-dada2'] 1m47.0s DUMP: Reading package lists... Building dependency tree... Reading state information... q2-dada2 is already the newest version (2020.11.1-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-y', 'install', 'q2-dada2'] 1m47.0s INFO: Running scripts post_install 1m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_install_exceptions'] 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_install_exceptions'] 1m47.1s INFO: Running scripts post_distupgrade 1m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_exceptions'] 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_exceptions'] 1m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_zz_backports'] 1m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_distupgrade_zz_backports'] 1m47.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m48.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m48.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m50.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m50.5s INFO: Running scripts pre_install 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_database-server'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_database-server'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_exceptions'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_exceptions'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_extras'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_extras'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy'] 1m50.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy'] 1m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy', 'q2-dada2'] 1m50.6s DUMP: q2-dada2: Installed: 2020.11.1-3 Candidate: 2020.11.1-3 Version table: *** 2020.11.1-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 1m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-cache', 'policy', 'q2-dada2'] 1m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-y', 'install', 'q2-dada2=2020.11.1-3'] 1m51.0s DUMP: Reading package lists... Building dependency tree... Reading state information... q2-dada2 is already the newest version (2020.11.1-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', '-y', 'install', 'q2-dada2=2020.11.1-3'] 1m51.0s INFO: Running scripts post_install 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_install_exceptions'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_install_exceptions'] 1m51.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m52.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 1m53.5s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 1m53.6s INFO: /bin converted to /usr/bin by /usr merge 1m53.6s INFO: /lib converted to /usr/lib by /usr merge 1m53.6s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m53.6s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m53.6s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m53.6s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m53.6s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m53.6s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m53.6s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m53.6s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m53.6s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m53.6s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m53.6s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m53.6s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m53.6s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m53.6s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m53.6s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m53.6s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m53.6s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 1m53.6s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m53.6s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m53.6s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m53.6s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m53.6s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m53.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m53.6s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m53.6s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m53.6s INFO: /sbin converted to /usr/sbin by /usr merge 1m56.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', '-ac', '--ignore-obsolete'] 2m1.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', '-ac', '--ignore-obsolete'] 2m1.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m1.0s DUMP: 0.15.6 2m1.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m1.0s INFO: Running adequate version 0.15.6 now. 2m1.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'q2-dada2'] 2m1.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'q2-dada2'] 2m1.2s INFO: Running scripts pre_remove 2m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_exceptions'] 2m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/pre_remove_exceptions'] 2m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m12.8s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed ca-certificates ca-certificates 20210119 install ok installed coreutils coreutils 8.32-4+b1 install ok installed cython3 cython3 0.29.21-3+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed fontconfig fontconfig 2.13.1-4.2 install ok installed fontconfig-config fontconfig-config 2.13.1-4.2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-2 install ok installed fonts-lyx fonts-lyx 2.3.6-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libaec0:amd64 libaec0 1.0.4-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libasan6:amd64 libasan6 10.2.1-6 install ok installed libatomic1:amd64 libatomic1 10.2.1-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libboost-dev:amd64 libboost-dev 1.74.0.3 install ok installed libboost1.74-dev:amd64 libboost1.74-dev 1.74.0-9 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbsd0:amd64 libbsd0 0.11.3-1+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u7 install ok installed libc-dev-bin libc-dev-bin 2.31-13+deb11u7 install ok installed libc6:amd64 libc6 2.31-13+deb11u7 install ok installed libc6-dev:amd64 libc6-dev 2.31-13+deb11u7 install ok installed libcairo2:amd64 libcairo2 1.16.0-5 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.18-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcurl4:amd64 libcurl4 7.74.0-1.3+deb11u11 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-4.2 install ok installed libfreetype6:amd64 libfreetype6 2.10.4+dfsg-1+deb11u1 install ok installed libfribidi0:amd64 libfribidi0 1.0.8-2+deb11u1 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.2.1-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgomp1:amd64 libgomp1 10.2.1-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.7.4-1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.6+repack-4+deb11u1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.6+repack-4+deb11u1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libitm1:amd64 libitm1 10.2.1-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-8+deb11u2 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.3-9 install ok installed liblcms2-2:amd64 liblcms2-2 2.12~rc1-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed liblsan0:amd64 liblsan0 10.2.1-6 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzf1:amd64 liblzf1 3.6-3 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmd0:amd64 libmd0 1.0.3-3 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncurses6:amd64 libncurses6 6.2+20201114-2+deb11u2 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-2 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libopenblas-base:amd64 libopenblas-base 0.3.13+ds-3+deb11u1 install ok installed libopenblas0:amd64 libopenblas0 0.3.13+ds-3+deb11u1 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.13+ds-3+deb11u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.46.2-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.46.2-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.46.2-3 install ok installed libpaper-utils libpaper-utils 1.1.28+b1 install ok installed libpaper1:amd64 libpaper1 1.1.28+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.40.0-1.1~deb11u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssw0:amd64 libssw0 1.1-13 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.2.1-6 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libsz2:amd64 libsz2 1.0.4-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtbb-dev:amd64 libtbb-dev 2020.3-1 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.11+dfsg-1 install ok installed libthai-data libthai-data 0.1.28-3 install ok installed libthai0:amd64 libthai0 0.1.28-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libtk8.6:amd64 libtk8.6 8.6.11-2 install ok installed libtsan0:amd64 libtsan0 10.2.1-6 install ok installed libubsan1:amd64 libubsan1 10.2.1-6 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2.1+deb11u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2.1+deb11u2 install ok installed libx11-6:amd64 libx11-6 2:1.7.2-1+deb11u2 install ok installed libx11-data libx11-data 2:1.7.2-1+deb11u2 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.14-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.14-3 install ok installed libxcb1:amd64 libxcb1 1.14-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1.1 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.0-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyajl2:amd64 libyajl2 2.1.0-3+deb11u2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed linux-libc-dev:amd64 linux-libc-dev 5.10.205-2 install ok installed littler littler 0.3.12-1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mailcap mailcap 3.69 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed procps procps 2:3.3.17-5 install ok installed python-matplotlib-data python-matplotlib-data 3.3.4-1 install ok installed python3 python3 3.9.2-3 install ok installed python3-backcall python3-backcall 0.2.0-1 install ok installed python3-bibtexparser python3-bibtexparser 1.1.0+ds-3 install ok installed python3-biom-format python3-biom-format 2.1.10-1+b1 install ok installed python3-cachecontrol python3-cachecontrol 0.12.6-1 install ok installed python3-certifi python3-certifi 2020.6.20-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-click python3-click 7.1.2-1 install ok installed python3-colorama python3-colorama 0.4.4-1 install ok installed python3-cycler python3-cycler 0.10.0-3 install ok installed python3-dateutil python3-dateutil 2.8.1-6 install ok installed python3-decorator python3-decorator 4.4.2-2 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-future python3-future 0.18.2-5 install ok installed python3-h5py python3-h5py 2.10.0-9 install ok installed python3-h5py-serial python3-h5py-serial 2.10.0-9+b2 install ok installed python3-hdmedians python3-hdmedians 0.14.1-1+b2 install ok installed python3-idna python3-idna 2.10-1 install ok installed python3-ijson python3-ijson 3.1.4-1 install ok installed python3-ipython python3-ipython 7.20.0-1+deb11u1 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-4 install ok installed python3-jedi python3-jedi 0.18.0-1 install ok installed python3-joblib python3-joblib 0.17.0-4+deb11u1 install ok installed python3-kiwisolver python3-kiwisolver 1.3.1-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2.2 install ok installed python3-matplotlib python3-matplotlib 3.3.4-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-msgpack python3-msgpack 1.0.0-6+b1 install ok installed python3-natsort python3-natsort 7.1.0-1 install ok installed python3-networkx python3-networkx 2.5+ds-2 install ok installed python3-numpy python3-numpy 1:1.19.5-1 install ok installed python3-pandas python3-pandas 1.1.5+dfsg-2 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 1.1.5+dfsg-2 install ok installed python3-parso python3-parso 0.8.1-1 install ok installed python3-pexpect python3-pexpect 4.8.0-2 install ok installed python3-pickleshare python3-pickleshare 0.7.5-3 install ok installed python3-pil:amd64 python3-pil 8.1.2+dfsg-0.3+deb11u1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.14-1 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-1 install ok installed python3-pygments python3-pygments 2.7.1+dfsg-2.1 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-requests python3-requests 2.25.1+dfsg-2 install ok installed python3-scipy python3-scipy 1.6.0-2 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-skbio python3-skbio 0.5.6-4 install ok installed python3-sklearn python3-sklearn 0.23.2-5 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 0.23.2-5 install ok installed python3-threadpoolctl python3-threadpoolctl 2.1.0-1 install ok installed python3-traitlets python3-traitlets 5.0.5-1 install ok installed python3-tz python3-tz 2021.1-1 install ok installed python3-tzlocal python3-tzlocal 2.1-1 install ok installed python3-urllib3 python3-urllib3 1.26.5-1~exp1 install ok installed python3-wcwidth python3-wcwidth 0.1.9+dfsg1-2 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed q2-dada2 q2-dada2 2020.11.1-3 install ok installed q2-types q2-types 2020.11.1-1 install ok installed qiime qiime 2020.11.1-1 install ok installed r-base-core r-base-core 4.0.4-1 install ok installed r-bioc-biobase r-bioc-biobase 2.50.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.36.0-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.24.1-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.58.0-1 install ok installed r-bioc-dada2 r-bioc-dada2 1.18.0+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.16.1+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.26.2-2 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.4-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.26.0-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.42.0+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.24.1-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.2.1-4 install ok installed r-bioc-rhtslib r-bioc-rhtslib 1.22.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.6.0-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.28.1-1 install ok installed r-bioc-shortread r-bioc-shortread 1.48.0-2 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.20.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.30.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.36.0+dfsg-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.1-2 install ok installed r-cran-bh r-cran-bh 1.74.0-1 install ok installed r-cran-bitops r-cran-bitops 1.0-6-5 install ok installed r-cran-brio r-cran-brio 1.1.1-1 install ok installed r-cran-callr r-cran-callr 3.5.1-1 install ok installed r-cran-cli r-cran-cli 2.3.0-1 install ok installed r-cran-colorspace r-cran-colorspace 2.0-0+dfsg-1 install ok installed r-cran-crayon r-cran-crayon 1.4.0-1 install ok installed r-cran-desc r-cran-desc 1.2.0-3 install ok installed r-cran-diffobj r-cran-diffobj 0.3.2-1 install ok installed r-cran-digest r-cran-digest 0.6.27-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.1-1 install ok installed r-cran-evaluate r-cran-evaluate 0.14-2 install ok installed r-cran-fansi r-cran-fansi 0.4.2-1 install ok installed r-cran-farver r-cran-farver 2.0.3-1+b1 install ok installed r-cran-formatr r-cran-formatr 1.7-2 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.3.3+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.4.2-1 install ok installed r-cran-gtable r-cran-gtable 0.3.0+dfsg-2 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2-4 install ok installed r-cran-isoband r-cran-isoband 0.2.3-2 install ok installed r-cran-jpeg r-cran-jpeg 0.1-8.1-1+b1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.7.2+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.2-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-lattice r-cran-lattice 0.20-41-1+b1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-29-3 install ok installed r-cran-lifecycle r-cran-lifecycle 0.2.0-2 install ok installed r-cran-littler r-cran-littler 0.3.12-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.1-1 install ok installed r-cran-mass r-cran-mass 7.3-53.1-1 install ok installed r-cran-matrix r-cran-matrix 1.3-2-1 install ok installed r-cran-matrixstats r-cran-matrixstats 0.58.0-3 install ok installed r-cran-mgcv r-cran-mgcv 1.8-34-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.152-1 install ok installed r-cran-pillar r-cran-pillar 1.4.7-1 install ok installed r-cran-pkgbuild r-cran-pkgbuild 1.2.0-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.1-1 install ok installed r-cran-pkgload r-cran-pkgload 1.1.0-1 install ok installed r-cran-plyr r-cran-plyr 1.8.6-2 install ok installed r-cran-png r-cran-png 0.1-7-4 install ok installed r-cran-praise r-cran-praise 1.0.0-4 install ok installed r-cran-prettyunits r-cran-prettyunits 1.1.1-2 install ok installed r-cran-processx r-cran-processx 3.4.5-1 install ok installed r-cran-ps r-cran-ps 1.5.0-1 install ok installed r-cran-r6 r-cran-r6 2.5.0-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-3 install ok installed r-cran-rcpp r-cran-rcpp 1.0.6-1 install ok installed r-cran-rcppparallel r-cran-rcppparallel 5.0.2+dfsg-4 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.2-1+b1 install ok installed r-cran-rematch2 r-cran-rematch2 2.1.2-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 0.4.10-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.2-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.13-1 install ok installed r-cran-scales r-cran-scales 1.1.1-1 install ok installed r-cran-snow r-cran-snow 1:0.4.3-2 install ok installed r-cran-stringi r-cran-stringi 1.5.3-1 install ok installed r-cran-stringr r-cran-stringr 1.4.0-2 install ok installed r-cran-testthat r-cran-testthat 3.0.1-1 install ok installed r-cran-tibble r-cran-tibble 3.0.6+dfsg-1 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-2 install ok installed r-cran-vctrs r-cran-vctrs 0.3.6-1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-4 install ok installed r-cran-waldo r-cran-waldo 0.2.3-2 install ok installed r-cran-withr r-cran-withr 2.4.1-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.14 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.1 install ok installed tzdata tzdata 2021a-1+deb11u11 install ok installed ucf ucf 3.0043 install ok installed unzip unzip 6.0-26+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed x11-common x11-common 1:7.7+22 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed zip zip 3.0-12 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-2+deb11u2 2m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'remove', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'libaec0:amd64', 'libasan6:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-backcall', 'python3-bibtexparser', 'python3-biom-format', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-jedi', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-threadpoolctl', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'sensible-utils', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 2m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx libaec0 libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libice6 libicu67 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblsan0 liblzf1 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev libopenblas-base libopenblas0 libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssw0 libstdc++-10-dev libsz2 libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler mailcap media-types mime-support openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-assertthat r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common sensible-utils ttf-bitstream-vera ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 280 to remove and 0 not upgraded. After this operation, 813 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50010 files and directories currently installed.) Removing q2-dada2 (2020.11.1-3) ... Removing q2-types (2020.11.1-1) ... Removing python3-skbio (0.5.6-4) ... Removing python3-cachecontrol (0.12.6-1) ... Removing python3-requests (2.25.1+dfsg-2) ... Removing r-bioc-dada2 (1.18.0+dfsg-1) ... Removing r-bioc-shortread (1.48.0-2) ... Removing r-bioc-genomicalignments (1.26.0-1) ... Removing r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Removing python3-hdmedians (0.14.1-1+b2) ... Removing python3-biom-format (2.1.10-1+b1) ... Removing cython3 (0.29.21-3+b1) ... Removing fonts-dejavu-core (2.37-2) ... Removing python3-matplotlib (3.3.4-1) ... Removing python-matplotlib-data (3.3.4-1) ... Removing fonts-lyx (2.3.6-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing python3-h5py (2.10.0-9) ... Removing python3-h5py-serial (2.10.0-9+b2) ... Removing libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Removing libsz2:amd64 (1.0.4-1) ... Removing libaec0:amd64 (1.0.4-1) ... Removing python3-sklearn (0.23.2-5) ... Removing python3-scipy (1.6.0-2) ... Removing python3-sklearn-lib:amd64 (0.23.2-5) ... Removing qiime (2020.11.1-1) ... Removing python3-pandas (1.1.5+dfsg-2) ... Removing python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Removing python3-numpy (1:1.19.5-1) ... Removing r-cran-ggplot2 (3.3.3+dfsg-1) ... Removing r-cran-mgcv (1.8-34-1) ... Removing liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing r-bioc-rsamtools (2.6.0-1) ... Removing r-bioc-genomicranges (1.42.0+dfsg-1) ... Removing r-bioc-genomeinfodb (1.26.2-2) ... Removing r-cran-rcurl (1.98-1.2-1+b1) ... Removing r-bioc-rhtslib (1.22.0+dfsg-1) ... Removing python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Removing r-bioc-biostrings (2.58.0-1) ... Removing r-bioc-xvector (0.30.0-1) ... Removing r-bioc-zlibbioc (1.36.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Removing python3-yaml (5.3.1-5) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-distutils (3.9.2-1) ... Removing python3-msgpack (1.0.0-6+b1) ... Removing python3-ipython (7.20.0-1+deb11u1) ... Removing python3-prompt-toolkit (3.0.14-1) ... Removing python3-wcwidth (0.1.9+dfsg1-2) ... Removing mime-support (3.66) ... Removing mailcap (3.69) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libopenblas-base:amd64 (0.3.13+ds-3+deb11u1) ... Removing libopenblas0:amd64 (0.3.13+ds-3+deb11u1) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-stringr (1.4.0-2) ... Removing r-cran-stringi (1.5.3-1) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing r-cran-latticeextra (0.6-29-3) ... Removing r-cran-jpeg (0.1-8.1-1+b1) ... Removing libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing liblcms2-2:amd64 (2.12~rc1-2) ... Removing liblzf1:amd64 (3.6-3) ... Removing python3-joblib (0.17.0-4+deb11u1) ... Removing procps (2:3.3.17-5) ... Removing libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Removing r-cran-png (0.1-7-4) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libssw0:amd64 (1.1-13) ... Removing r-cran-rcppparallel (5.0.2+dfsg-4) ... Removing libtbb-dev:amd64 (2020.3-1) ... Removing libtbb2:amd64 (2020.3-1) ... Removing libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Removing libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Removing python3-ijson (3.1.4-1) ... Removing libyajl2:amd64 (2.1.0-3+deb11u2) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing r-cran-plyr (1.8.6-2) ... Removing r-cran-rcpp (1.0.6-1) ... Removing littler (0.3.12-1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-backcall (0.2.0-1) ... Removing python3-bibtexparser (1.1.0+ds-3) ... Removing python3-certifi (2020.6.20-1) ... Removing python3-chardet (4.0.0-1) ... Removing python3-click (7.1.2-1) ... Removing python3-colorama (0.4.4-1) ... Removing python3-cycler (0.10.0-3) ... Removing python3-dateutil (2.8.1-6) ... Removing python3-networkx (2.5+ds-2) ... Removing python3-decorator (4.4.2-2) ... Removing python3-future (0.18.2-5) ... Removing python3-idna (2.10-1) ... Removing python3-traitlets (5.0.5-1) ... Removing python3-ipython-genutils (0.2.0-4) ... Removing python3-jedi (0.18.0-1) ... Removing python3-kiwisolver (1.3.1-1+b1) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-lockfile (1:0.12.2-2.2) ... Removing python3-natsort (7.1.0-1) ... Removing python3-parso (0.8.1-1) ... Removing python3-pexpect (4.8.0-2) ... Removing python3-pickleshare (0.7.5-3) ... Removing python3-pygments (2.7.1+dfsg-2.1) ... Removing python3-pkg-resources (52.0.0-4) ... Removing python3-ptyprocess (0.7.0-1) ... Removing python3-pyparsing (2.4.7-1) ... Removing python3-urllib3 (1.26.5-1~exp1) ... Removing python3-six (1.16.0-2) ... Removing python3-threadpoolctl (2.1.0-1) ... Removing python3-tzlocal (2.1-1) ... Removing python3-tz (2021.1-1) ... Removing r-bioc-biobase (2.50.0-1) ... Removing r-bioc-delayedarray (0.16.1+dfsg-1) ... Removing r-bioc-iranges (2.24.1-1) ... Removing r-bioc-s4vectors (0.28.1-1) ... Removing r-bioc-matrixgenerics (1.2.1-4) ... Removing r-bioc-genomeinfodbdata (1.2.4-1) ... Removing r-cran-isoband (0.2.3-2) ... Removing r-cran-testthat (3.0.1-1) ... Removing r-cran-pkgload (1.1.0-1) ... Removing r-cran-waldo (0.2.3-2) ... Removing r-cran-bitops (1.0-6-5) ... Removing r-cran-brio (1.1.1-1) ... Removing r-cran-pkgbuild (1.2.0-1) ... Removing r-cran-callr (3.5.1-1) ... Removing r-cran-scales (1.1.1-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.0-0+dfsg-1) ... Removing r-cran-rematch2 (2.1.2-2) ... Removing r-cran-tibble (3.0.6+dfsg-1) ... Removing r-cran-pillar (1.4.7-1) ... Removing r-cran-diffobj (0.3.2-1) ... Removing r-cran-vctrs (0.3.6-1) ... Removing r-cran-digest (0.6.27-1) ... Removing r-cran-ellipsis (0.3.1-1) ... Removing r-cran-evaluate (0.14-2) ... Removing r-cran-fansi (0.4.2-1) ... Removing r-cran-farver (2.0.3-1+b1) ... Removing r-cran-lifecycle (0.2.0-2) ... Removing r-cran-gtable (0.3.0+dfsg-2) ... Removing r-cran-hwriter (1.3.2-4) ... Removing r-cran-jsonlite (1.7.2+dfsg-1) ... Removing r-cran-labeling (0.4.2-1) ... Removing r-cran-nlme (3.1.152-1) ... Removing r-cran-littler (0.3.12-1) ... Removing r-cran-magrittr (2.0.1-1) ... Removing r-cran-mass (7.3-53.1-1) ... Removing r-cran-matrixstats (0.58.0-3) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.1-1) ... Removing r-cran-praise (1.0.0-4) ... Removing r-cran-prettyunits (1.1.1-2) ... Removing r-cran-processx (3.4.5-1) ... Removing r-cran-ps (1.5.0-1) ... Removing r-cran-rcolorbrewer (1.1-2-3) ... Removing r-cran-rlang (0.4.10-1) ... Removing r-cran-rstudioapi (0.13-1) ... Removing r-cran-utf8 (1.1.4-2) ... Removing r-cran-viridislite (0.3.0-4) ... Removing r-cran-withr (2.4.1-1) ... Removing r-bioc-biocparallel (1.24.1-1) ... Removing r-cran-snow (1:0.4.3-2) ... Removing r-cran-matrix (1.3-2-1) ... Removing r-cran-bh (1.74.0-1) ... Removing libboost-dev:amd64 (1.74.0.3) ... Removing libboost1.74-dev:amd64 (1.74.0-9) ... Removing libstdc++-10-dev:amd64 (10.2.1-6) ... Removing libgcc-10-dev:amd64 (10.2.1-6) ... Removing libasan6:amd64 (10.2.1-6) ... Removing libatomic1:amd64 (10.2.1-6) ... Removing libc6-dev:amd64 (2.31-13+deb11u7) ... Removing libc-dev-bin (2.31-13+deb11u7) ... Removing libcrypt-dev:amd64 (1:4.4.18-4) ... Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libitm1:amd64 (10.2.1-6) ... Removing liblsan0:amd64 (10.2.1-6) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libnsl-dev:amd64 (1.3.0-2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Removing libtsan0:amd64 (10.2.1-6) ... Removing libubsan1:amd64 (10.2.1-6) ... Removing linux-libc-dev:amd64 (5.10.205-2) ... Removing media-types (4.0.0) ... Removing r-bioc-biocgenerics (0.36.0-1) ... Removing r-cran-desc (1.2.0-3) ... Removing r-cran-cli (2.3.0-1) ... Removing r-cran-assertthat (0.2.1-2) ... Removing r-cran-crayon (1.4.0-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.7-2) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-glue (1.4.2-1) ... Removing r-cran-lattice (0.20-41-1+b1) ... Removing r-cran-r6 (2.5.0-1) ... Removing r-cran-rprojroot (2.0.2-1) ... Removing r-base-core (4.0.4-1) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.46.2-3) ... Removing libpangoft2-1.0-0:amd64 (1.46.2-3) ... Removing libpango-1.0-0:amd64 (1.46.2-3) ... Removing fontconfig (2.13.1-4.2) ... Removing libtk8.6:amd64 (8.6.11-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libcairo2:amd64 (1.16.0-5) ... Removing libfontconfig1:amd64 (2.13.1-4.2) ... Removing fontconfig-config (2.13.1-4.2) ... Removing libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Removing libxt6:amd64 (1:1.2.0-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.14-3) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libthai0:amd64 (0.1.28-3) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing libfribidi0:amd64 (1.0.8-2+deb11u1) ... Removing libopenblas0-pthread:amd64 (0.3.13+ds-3+deb11u1) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing libharfbuzz0b:amd64 (2.7.4-1) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Removing libgomp1:amd64 (10.2.1-6) ... Removing libgraphite2-3:amd64 (1.3.14-1) ... Removing libicu67:amd64 (67.1-7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libpaper-utils (1.1.28+b1) ... Removing libpaper1:amd64 (1.1.28+b1) ... Removing libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing libreadline8:amd64 (8.1-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libtcl8.6:amd64 (8.6.11+dfsg-1) ... Removing libthai-data (0.1.28-3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxcb-render0:amd64 (1.14-3) ... Removing libxext6:amd64 (2:1.3.3-1.1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing readline-common (8.1-1) ... Removing ucf (3.0043) ... Removing sensible-utils (0.0.14) ... Removing ttf-bitstream-vera (1.10-8.1) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing unzip (6.0-26+deb11u1) ... Removing x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-12) ... Removing libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Removing libxcb1:amd64 (1.14-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.3-1+deb11u1) ... Removing libmd0:amd64 (1.0.3-3) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libx11-data (2:1.7.2-1+deb11u2) ... Removing libxau6:amd64 (1:1.0.9-1) ... Processing triggers for libc-bin (2.31-13+deb11u7) ... 2m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'remove', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'libaec0:amd64', 'libasan6:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-backcall', 'python3-bibtexparser', 'python3-biom-format', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-jedi', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-threadpoolctl', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'sensible-utils', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 2m26.2s INFO: Running scripts post_remove 2m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_remove_exceptions'] 2m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_remove_exceptions'] 2m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--purge', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'libaec0:amd64', 'libasan6:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-backcall', 'python3-bibtexparser', 'python3-biom-format', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-jedi', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-threadpoolctl', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'sensible-utils', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 2m27.3s DUMP: (Reading database ... 6727 files and directories currently installed.) Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cython3 which isn't installed Purging configuration files for fontconfig (2.13.1-4.2) ... Purging configuration files for fontconfig-config (2.13.1-4.2) ... Purging configuration files for fonts-dejavu-core (2.37-2) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan6 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.74-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcrypt-dev which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-10-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmd0 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-base which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28+b1) ... dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-10-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtbb-dev which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyajl2 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for mailcap (3.69) ... Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for procps (2:3.3.17-5) ... Purging configuration files for python-matplotlib-data (3.3.4-1) ... Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-backcall which isn't installed dpkg: warning: ignoring request to remove python3-bibtexparser which isn't installed dpkg: warning: ignoring request to remove python3-biom-format which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-future which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-hdmedians which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-ijson which isn't installed dpkg: warning: ignoring request to remove python3-ipython which isn't installed dpkg: warning: ignoring request to remove python3-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python3-jedi which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-msgpack which isn't installed dpkg: warning: ignoring request to remove python3-natsort which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parso which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pickleshare which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-skbio which isn't installed dpkg: warning: ignoring request to remove python3-sklearn which isn't installed dpkg: warning: ignoring request to remove python3-sklearn-lib which isn't installed dpkg: warning: ignoring request to remove python3-threadpoolctl which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove q2-types which isn't installed dpkg: warning: ignoring request to remove qiime which isn't installed Purging configuration files for r-base-core (4.0.4-1) ... dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-dada2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-shortread which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-brio which isn't installed dpkg: warning: ignoring request to remove r-cran-callr which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-diffobj which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgbuild which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgload which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-processx which isn't installed dpkg: warning: ignoring request to remove r-cran-ps which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppparallel which isn't installed Purging configuration files for r-cran-rcurl (1.98-1.2-1+b1) ... dpkg: warning: ignoring request to remove r-cran-rematch2 which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-waldo which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed Purging configuration files for readline-common (8.1-1) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043) ... Purging configuration files for unzip (6.0-26+deb11u1) ... Purging configuration files for x11-common (1:7.7+22) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 2m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--purge', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-lyx', 'libaec0:amd64', 'libasan6:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.74-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libice6:amd64', 'libicu67:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmd0:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'openssl', 'perl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-backcall', 'python3-bibtexparser', 'python3-biom-format', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-click', 'python3-colorama', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-future', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-jedi', 'python3-joblib', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-matplotlib', 'python3-minimal', 'python3-msgpack', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-threadpoolctl', 'python3-traitlets', 'python3-tz', 'python3-tzlocal', 'python3-urllib3', 'python3-wcwidth', 'python3-yaml', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-crayon', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'sensible-utils', 'ttf-bitstream-vera', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 2m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--purge', 'q2-dada2'] 2m27.3s DUMP: dpkg: warning: ignoring request to remove q2-dada2 which isn't installed 2m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--purge', 'q2-dada2'] 2m27.3s INFO: Running scripts post_purge 2m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_purge_exceptions'] 2m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_purge_exceptions'] 2m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--purge', '--pending'] 2m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--purge', '--pending'] 2m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--remove', '--pending'] 2m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg', '--remove', '--pending'] 2m27.4s INFO: Running scripts post_test 2m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_test_exceptions'] 2m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'tmp/scripts/post_test_exceptions'] 2m27.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 2m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 2m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg-divert', '--list'] 2m27.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'dpkg-divert', '--list'] 2m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'clean'] 2m27.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7', 'apt-get', 'clean'] 2m27.8s DEBUG: Recording chroot state 2m28.4s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-lyx, ttf-bitstream-vera, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-lyx, ttf-bitstream-vera, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned 2m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/shm'] 2m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/shm'] 2m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/console'] 2m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/console'] 2m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/ptmx'] 2m28.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/ptmx'] 2m28.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/pts'] 2m28.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/dev/pts'] 2m28.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/proc'] 2m28.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7/proc'] 2m28.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 2m29.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb7y49ph7'] 2m29.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpb7y49ph7 2m29.0s INFO: PASS: Upgrading between Debian distributions. 2m29.0s INFO: PASS: All tests. 2m29.0s INFO: piuparts run ends. ret=0 End: 2024-01-19 16:43:10 GMT