Start: 2024-04-18 04:44:17 GMT [bullseye] Package: snakemake Version: 5.24.1-2 Installed-Size: 21382 Maintainer: Debian Med Packaging Team Architecture: all Depends: ca-certificates, libjs-bootstrap, libjs-d3, libjs-jquery, libjs-mathjax, node-dagre-d3-renderer, python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-nbformat, python3-pkg-resources, python3-psutil, python3-pulp (<< 2.0~), python3-ratelimiter, python3-requests, python3-toposort, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 2.4.3-5~), sphinx-rtd-theme-common (>= 0.5.1+dfsg) Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-jinja2, python3-networkx, python3-pygments, python3-pygraphviz, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-drmaa, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.24.1-2_all.deb Size: 6107188 MD5sum: 637496914f29fdc326848f8c74959383 SHA256: 9295b92f0191bc35277c3531f223ab947e5f825902cccacb884cccfa5e41ff07 [bullseye-next] Package: snakemake Version: 5.24.1-2 Installed-Size: 21382 Maintainer: Debian Med Packaging Team Architecture: all Depends: ca-certificates, libjs-bootstrap, libjs-d3, libjs-jquery, libjs-mathjax, node-dagre-d3-renderer, python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-nbformat, python3-pkg-resources, python3-psutil, python3-pulp (<< 2.0~), python3-ratelimiter, python3-requests, python3-toposort, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 2.4.3-5~), sphinx-rtd-theme-common (>= 0.5.1+dfsg) Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-jinja2, python3-networkx, python3-pygments, python3-pygraphviz, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-drmaa, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.24.1-2_all.deb Size: 6107188 MD5sum: 637496914f29fdc326848f8c74959383 SHA256: 9295b92f0191bc35277c3531f223ab947e5f825902cccacb884cccfa5e41ff07 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt snakemake=5.24.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d bullseye -d bullseye-next -B /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat --apt snakemake=5.24.1-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph6w8lx30 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph6w8lx30 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.6s DEBUG: Created policy-rc.d and chmodded it. 0m0.6s DEBUG: Created resolv.conf. 0m0.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph6w8lx30/tmp/scripts/ 0m0.6s INFO: Running scripts post_chroot_unpack 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/bullseye2next/reference-chroot-metadata.dat 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m4.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_test_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.9s DUMP: Package: snakemake Version: 5.24.1-2 Installed-Size: 21382 Maintainer: Debian Med Packaging Team Architecture: all Depends: ca-certificates, libjs-bootstrap, libjs-d3, libjs-jquery, libjs-mathjax, node-dagre-d3-renderer, python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-nbformat, python3-pkg-resources, python3-psutil, python3-pulp (<< 2.0~), python3-ratelimiter, python3-requests, python3-toposort, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 2.4.3-5~), sphinx-rtd-theme-common (>= 0.5.1+dfsg) Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-jinja2, python3-networkx, python3-pygments, python3-pygraphviz, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-drmaa, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://snakemake.readthedocs.io/ Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.24.1-2_all.deb Size: 6107188 MD5sum: 637496914f29fdc326848f8c74959383 SHA256: 9295b92f0191bc35277c3531f223ab947e5f825902cccacb884cccfa5e41ff07 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m4.9s INFO: apt-cache knows about the following packages: snakemake 0m4.9s INFO: Running scripts pre_install 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy'] 0m5.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy', 'snakemake'] 0m5.0s DUMP: snakemake: Installed: (none) Candidate: 5.24.1-2 Version table: 5.24.1-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy', 'snakemake'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-y', 'install', 'snakemake'] 0m41.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-mathjax git git-man libblas3 libbrotli1 libc-ares2 libcurl3-gnutls libdatrie1 libdeflate0 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libicu67 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-d3-format libjs-inherits libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-sprintf-js libjs-underscore libjs-util liblapack3 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libnode72 libnotify-bin libnotify4 libperl5.32 libpng16-16 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libtiff5 libuv1 libwebp6 libxml2 libyaml-0-2 media-types mocha node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openssl perl perl-modules-5.32 python3 python3-appdirs python3-attr python3-certifi python3-chardet python3-configargparse python3-datrie python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-importlib-metadata python3-ipython-genutils python3-jsonschema python3-jupyter-core python3-lib2to3 python3-minimal python3-more-itertools python3-nbformat python3-pkg-resources python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-roman python3-setuptools python3-six python3-smmap python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.9 python3.9-minimal readline-common sgml-base shared-mime-info sphinx-rtd-theme-common xml-core Suggested packages: gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gdbm-l10n fonts-mathjax-extras fonts-stix libjs-mathjax-doc libjs-angularjs sensible-utils chai javascript-common npm perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-git-doc python-jsonschema-doc python3-pip python-psutil-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-setuptools-doc python3-nose python3.9-venv python3.9-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: patch less ssh-client libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs javascript-common libldap-common libgpm2 notification-daemon publicsuffix libsasl2-modules nodejs-doc netbase libpaper-utils python3-pil python3-pygments cwltool imagemagick python3-tz python3-yappi python3-jinja2 python3-networkx python3-pygraphviz python3-azure-storage python3-biopython python3-boto3 python3-botocore python3-drmaa python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes The following NEW packages will be installed: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-mathjax git git-man libblas3 libbrotli1 libc-ares2 libcurl3-gnutls libdatrie1 libdeflate0 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libicu67 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-d3-format libjs-inherits libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-sprintf-js libjs-underscore libjs-util liblapack3 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libnode72 libnotify-bin libnotify4 libperl5.32 libpng16-16 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libtiff5 libuv1 libwebp6 libxml2 libyaml-0-2 media-types mocha node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openssl perl perl-modules-5.32 python3 python3-appdirs python3-attr python3-certifi python3-chardet python3-configargparse python3-datrie python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-importlib-metadata python3-ipython-genutils python3-jsonschema python3-jupyter-core python3-lib2to3 python3-minimal python3-more-itertools python3-nbformat python3-pkg-resources python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-roman python3-setuptools python3-six python3-smmap python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.9 python3.9-minimal readline-common sgml-base shared-mime-info snakemake sphinx-rtd-theme-common xml-core 0 upgraded, 255 newly installed, 0 to remove and 0 not upgraded. Need to get 77.5 MB of archives. After this operation, 342 MB of additional disk space will be used. 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http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-1 [485 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [276 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 coinor-libclp1 amd64 1.17.5+repack1-1 [939 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 coinor-libcgl1 amd64 0.60.3+repack1-2 [433 kB] Get:32 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2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 liberror-perl all 0.17029-1 [31.0 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 git-man all 1:2.30.2-1+deb11u2 [1828 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 git amd64 1:2.30.2-1+deb11u2 [5518 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u3 [102 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf2.0-common all 2.42.2+dfsg-1+deb11u1 [320 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 shared-mime-info amd64 2.0-1 [701 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.2+dfsg-1+deb11u1 [147 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libjs-d3-format all 1:1.4.1-3 [16.9 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libjs-inherits all 2.0.4-1 [3228 B] Get:69 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libjs-sprintf-js all 1.1.2+ds1-2 [12.3 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.12~dfsg-1~deb11u4 [8332 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.12~dfsg-1~deb11u4 [148 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 node-inherits all 2.0.4-1 [4204 B] Get:78 http://deb.debian.org/debian bullseye/main amd64 libjs-util all 0.10.3-4 [9620 B] Get:79 http://deb.debian.org/debian bullseye/main amd64 libnotify4 amd64 0.7.9-3 [23.7 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libnotify-bin amd64 0.7.9-3 [14.2 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 node-ansi-colors all 4.1.1-2 [13.2 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 node-browser-stdout all 1.3.1-2 [3268 B] Get:84 http://deb.debian.org/debian bullseye/main amd64 node-camelcase all 6.2.0-2 [5512 B] Get:85 http://deb.debian.org/debian bullseye/main amd64 node-color-name all 1.1.4+~1.1.1-1 [5788 B] Get:86 http://deb.debian.org/debian bullseye/main amd64 node-color-convert all 1.9.3-1 [10.2 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 node-ansi-styles all 4.2.1-1 [7600 B] Get:88 http://deb.debian.org/debian bullseye/main amd64 node-escape-string-regexp all 4.0.0-1 [4116 B] Get:89 http://deb.debian.org/debian bullseye/main amd64 node-has-flag all 4.0.0-1 [4076 B] Get:90 http://deb.debian.org/debian bullseye/main amd64 node-supports-color all 8.1.0+~7.2.0-1 [6736 B] Get:91 http://deb.debian.org/debian bullseye/main amd64 node-chalk all 4.1.0-1 [15.0 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 node-is-extglob all 2.1.1-1 [4128 B] Get:93 http://deb.debian.org/debian bullseye/main amd64 node-is-glob all 4.0.1-1 [6312 B] Get:94 http://deb.debian.org/debian bullseye/main amd64 node-binary-extensions all 2.2.0-1 [4352 B] Get:95 http://deb.debian.org/debian bullseye/main amd64 node-is-binary-path all 2.1.0-1 [3432 B] Get:96 http://deb.debian.org/debian bullseye/main amd64 node-normalize-path all 3.0.0-2 [5752 B] Get:97 http://deb.debian.org/debian bullseye/main amd64 node-anymatch all 3.1.1+~2.2.2-1 [28.5 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 node-graceful-fs all 4.2.4+repack-1 [13.1 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 node-set-immediate-shim all 2.0.0-1 [3600 B] Get:100 http://deb.debian.org/debian bullseye/main amd64 node-readdirp all 3.5.0-2 [11.3 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 node-async-each all 1.0.3-1 [4024 B] Get:102 http://deb.debian.org/debian bullseye/main amd64 node-is-buffer all 2.0.5-1 [4048 B] Get:103 http://deb.debian.org/debian bullseye/main amd64 node-kind-of all 6.0.3+dfsg-1 [10.0 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 node-is-number all 7.0.0-1.1 [5860 B] Get:105 http://deb.debian.org/debian bullseye/main amd64 node-repeat-string all 1.6.1-1 [5180 B] Get:106 http://deb.debian.org/debian bullseye/main amd64 node-to-regex-range all 5.0.1-2 [10.2 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 node-fill-range all 7.0.1-2 [7872 B] Get:108 http://deb.debian.org/debian bullseye/main amd64 node-braces all 3.0.2+~3.0.0-1 [20.6 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 node-path-is-absolute all 2.0.0-1 [3864 B] Get:110 http://deb.debian.org/debian bullseye/main amd64 node-path-dirname all 1.0.2-1.1 [3972 B] Get:111 http://deb.debian.org/debian bullseye/main amd64 node-glob-parent all 5.1.1+~5.1.0-2 [6672 B] Get:112 http://deb.debian.org/debian bullseye/main amd64 node-chokidar all 3.4.3-3 [32.0 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 node-ms all 2.1.3+~cs0.7.31-1 [5612 B] Get:114 http://deb.debian.org/debian bullseye/main amd64 node-debug all 4.3.1+~cs4.1.5-1 [17.3 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 node-decamelize all 4.0.0-1 [3944 B] Get:116 http://deb.debian.org/debian bullseye/main amd64 node-diff all 4.0.2~dfsg-2 [65.0 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 node-p-limit all 3.1.0+~cs2.3.0-1 [6904 B] Get:118 http://deb.debian.org/debian bullseye/main amd64 node-p-locate all 5.0.0-1 [5080 B] Get:119 http://deb.debian.org/debian bullseye/main amd64 node-path-exists all 4.0.0-2 [3840 B] Get:120 http://deb.debian.org/debian bullseye/main amd64 node-locate-path all 6.0.0-1 [5264 B] Get:121 http://deb.debian.org/debian bullseye/main amd64 node-find-up all 5.0.0-1 [5840 B] Get:122 http://deb.debian.org/debian bullseye/main amd64 node-fs.realpath all 1.0.0-1.1 [5780 B] Get:123 http://deb.debian.org/debian bullseye/main amd64 node-wrappy all 1.0.2-1.1 [3352 B] Get:124 http://deb.debian.org/debian bullseye/main amd64 node-once all 1.4.0-3 [4344 B] Get:125 http://deb.debian.org/debian bullseye/main amd64 node-inflight all 1.0.6-1.1 [3568 B] Get:126 http://deb.debian.org/debian bullseye/main amd64 node-balanced-match all 1.0.0-1 [4528 B] Get:127 http://deb.debian.org/debian bullseye/main amd64 node-brace-expansion all 2.0.0-1 [7184 B] Get:128 http://deb.debian.org/debian bullseye/main amd64 node-minimatch all 3.0.4+~3.0.3-1+deb11u2 [16.1 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 node-glob all 7.1.6+~7.1.3-1 [129 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 node-growl all 1.10.5-2 [7356 B] Get:131 http://deb.debian.org/debian bullseye/main amd64 node-he all 1.2.0-1 [36.7 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 node-is-plain-obj all 3.0.0-1 [3916 B] Get:133 http://deb.debian.org/debian bullseye/main amd64 node-sprintf-js all 1.1.2+ds1-2 [1836 B] Get:134 http://deb.debian.org/debian bullseye/main amd64 node-argparse all 2.0.1-1 [34.5 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 node-esprima all 4.0.1+ds+~4.0.2-2 [69.0 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 node-js-yaml all 3.14.1+dfsg+~3.12.6-2 [44.8 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 node-safe-buffer all 5.2.1+~cs2.1.2-1 [15.5 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 node-randombytes all 2.1.0-1 [4104 B] Get:139 http://deb.debian.org/debian bullseye/main amd64 node-serialize-javascript all 5.0.1-2 [11.5 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 node-strip-json-comments all 3.1.1-1 [5168 B] Get:141 http://deb.debian.org/debian bullseye/main amd64 node-isexe all 2.0.0-5 [4632 B] Get:142 http://deb.debian.org/debian bullseye/main amd64 node-which all 2.0.2+~cs1.3.2-1 [8436 B] Get:143 http://deb.debian.org/debian bullseye/main amd64 node-ansi-regex all 5.0.1-1~deb11u1 [4704 B] Get:144 http://deb.debian.org/debian bullseye/main amd64 node-strip-ansi all 6.0.0-2 [4044 B] Get:145 http://deb.debian.org/debian bullseye/main amd64 node-clone all 2.1.2-2 [8132 B] Get:146 http://deb.debian.org/debian bullseye/main amd64 node-defaults all 1.0.3-2 [3612 B] Get:147 http://deb.debian.org/debian bullseye/main amd64 node-wcwidth.js all 1.0.0-1.1 [6652 B] Get:148 http://deb.debian.org/debian bullseye/main amd64 node-string-width all 4.2.0-1 [9716 B] Get:149 http://deb.debian.org/debian bullseye/main amd64 node-wide-align all 1.1.3-1 [3896 B] Get:150 http://deb.debian.org/debian bullseye/main amd64 node-require-directory all 2.1.1-1.1 [5596 B] Get:151 http://deb.debian.org/debian bullseye/main amd64 node-get-caller-file all 1.0.2-1.1 [3056 B] Get:152 http://deb.debian.org/debian bullseye/main amd64 node-set-blocking all 2.0.0-1.1 [4036 B] Get:153 http://deb.debian.org/debian bullseye/main amd64 node-require-main-filename all 2.0.0-1 [4108 B] Get:154 http://deb.debian.org/debian bullseye/main amd64 node-wrap-ansi all 4.0.0-2 [5540 B] Get:155 http://deb.debian.org/debian bullseye/main amd64 node-cliui all 4.1.0-2 [7964 B] Get:156 http://deb.debian.org/debian bullseye/main amd64 node-which-module all 2.0.0-1 [3792 B] Get:157 http://deb.debian.org/debian bullseye/main amd64 node-end-of-stream all 1.4.4-1 [4356 B] Get:158 http://deb.debian.org/debian bullseye/main amd64 node-pump all 3.0.0-4 [4936 B] Get:159 http://deb.debian.org/debian bullseye/main amd64 node-get-stream all 6.0.0-1 [7172 B] Get:160 http://deb.debian.org/debian bullseye/main amd64 node-is-stream all 2.0.0-1 [4004 B] Get:161 http://deb.debian.org/debian bullseye/main amd64 node-merge-stream all 2.0.0+~1.1.2-1 [5036 B] Get:162 http://deb.debian.org/debian bullseye/main amd64 node-mimic-fn all 3.1.0-1 [5180 B] Get:163 http://deb.debian.org/debian bullseye/main amd64 node-npm-run-path all 2.0.2-2 [4412 B] Get:164 http://deb.debian.org/debian bullseye/main amd64 node-shebang-regex all 3.0.0-1 [3352 B] Get:165 http://deb.debian.org/debian bullseye/main amd64 node-shebang-command all 1.2.0-1.1 [3132 B] Get:166 http://deb.debian.org/debian bullseye/main amd64 node-signal-exit all 3.0.3-1 [6172 B] Get:167 http://deb.debian.org/debian bullseye/main amd64 node-execa all 4.1.0+dfsg+~cs19.3.6-5 [28.1 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 node-invert-kv all 3.0.1-1 [3904 B] Get:169 http://deb.debian.org/debian bullseye/main amd64 node-lcid all 3.1.1-1 [5280 B] Get:170 http://deb.debian.org/debian bullseye/main amd64 node-mem all 1.1.0-1.1 [4308 B] Get:171 http://deb.debian.org/debian bullseye/main amd64 node-os-locale all 5.0.0-1 [4876 B] Get:172 http://deb.debian.org/debian bullseye/main amd64 node-y18n all 4.0.0-4 [6256 B] Get:173 http://deb.debian.org/debian bullseye/main amd64 node-yargs-parser all 18.1.3+~15.0.0-1 [24.0 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 node-yargs all 15.3.1+repack-2 [109 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 mocha all 8.2.1+ds1+~cs29.4.27-3 [157 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 node-object-assign all 4.1.1-3 [4460 B] Get:177 http://deb.debian.org/debian bullseye/main amd64 node-util all 0.10.3-4 [2960 B] Get:178 http://deb.debian.org/debian bullseye/main amd64 node-assert all 1.5.0-1 [8892 B] Get:179 http://deb.debian.org/debian bullseye/main amd64 node-commander all 6.2.1-2 [38.3 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 node-d3-array all 1.2.4-3 [19.2 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 node-d3-axis all 1.0.12-3 [10.1 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 node-d3-dispatch all 1.0.6-2 [7856 B] Get:183 http://deb.debian.org/debian bullseye/main amd64 node-d3-selection all 1.4.0-6 [30.7 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 node-d3-drag all 1.2.5-2 [13.9 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 node-d3-color all 1.2.8-2 [15.0 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 node-d3-interpolate all 1.4.0-2 [18.5 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 node-d3-ease all 1.0.5-3 [9932 B] Get:188 http://deb.debian.org/debian bullseye/main amd64 node-d3-timer all 1.0.10-1 [8608 B] Get:189 http://deb.debian.org/debian bullseye/main amd64 node-d3-transition all 1.3.2-3 [22.2 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 node-d3-brush all 1.1.5-2 [181 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 node-d3-path all 1.0.9-2 [8212 B] Get:192 http://deb.debian.org/debian bullseye/main amd64 node-d3-chord all 1.0.6-3 [10.0 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 node-d3-collection all 1.0.7-3 [11.7 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 node-d3-contour all 1.3.2-4 [13.6 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 node-iconv-lite all 0.5.1-3 [128 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 node-d3-queue all 3.0.7-11 [9828 B] Get:197 http://deb.debian.org/debian bullseye/main amd64 node-rw all 1.3.3-2 [7096 B] Get:198 http://deb.debian.org/debian bullseye/main amd64 node-d3-dsv all 1.1.1-5 [14.5 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 node-d3-fetch all 1.2.0-1 [7344 B] Get:200 http://deb.debian.org/debian bullseye/main amd64 node-d3-quadtree all 1.0.7-2 [13.1 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 node-d3-force all 1.2.1-2 [368 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 node-d3-format all 1:1.4.1-3 [9004 B] Get:203 http://deb.debian.org/debian bullseye/main amd64 node-d3-geo all 1.11.9-4 [53.6 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 node-d3-hierarchy all 1.1.8-3 [28.6 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 node-d3-polygon all 1.0.5-3 [7396 B] Get:206 http://deb.debian.org/debian bullseye/main amd64 node-d3-random all 1.1.2-3 [7184 B] Get:207 http://deb.debian.org/debian bullseye/main amd64 node-d3-time all 1.0.11-4 [14.6 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 node-d3-time-format all 2.1.3-3 [18.9 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale all 2.2.2-3 [31.5 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale-chromatic all 1.5.0-2 [18.5 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 node-d3-shape all 1.3.7-2 [40.4 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 node-d3-voronoi all 1.1.4-3 [17.1 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 node-d3-zoom all 1.8.3-2 [20.1 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 node-d3 all 5.16.0-4 [208 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 node-lodash all 4.17.21+dfsg+~cs8.31.173-1 [385 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 node-graphlibrary all 2.2.0+really2.1.8+dfsg-3 [53.2 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 node-dagre-layout all 0.8.8+really0.8.5+dfsg-4 [42.4 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 node-dagre-d3-renderer all 0.6.4+dfsg-3 [601 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 python3-appdirs all 1.4.4-1 [12.7 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 python3-configargparse all 1.2.3-1 [25.2 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 python3-datrie amd64 0.8.2-1+b1 [98.5 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get:229 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 python3-smmap all 4.0.0-1 [21.0 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 python3-gitdb all 4.0.5-1 [46.5 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 python3-git all 3.1.14-1 [119 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:237 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 python3-jupyter-core all 4.7.1-1+deb11u1 [44.2 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 python3-nbformat all 5.1.2-1 [51.6 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 python3-psutil amd64 5.8.0-1 [184 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 python3-pulp all 1.6.0+dfsg1-5 [54.0 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get:249 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 python3-toposort all 1.6-1 [7620 B] Get:252 http://deb.debian.org/debian bullseye/main amd64 python3-wrapt amd64 1.12.1-4+b1 [39.3 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 snakemake all 5.24.1-2 [6107 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 77.5 MB in 1s (73.0 MB/s) Selecting previously unselected package perl-modules-5.32. 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Setting up media-types (4.0.0) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up fonts-lato (2.0-2.1) ... Setting up libjs-sprintf-js (1.1.2+ds1-2) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libjs-inherits (2.0.4-1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up node-color-name (1.1.4+~1.1.1-1) ... Setting up libc-ares2:amd64 (1.17.1-1+deb11u3) ... 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Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up nodejs (12.22.12~dfsg-1~deb11u4) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up node-argparse (2.0.1-1) ... Setting up node-d3-path (1.0.9-2) ... Setting up node-he (1.2.0-1) ... Setting up node-clone (2.1.2-2) ... Setting up node-has-flag (4.0.0-1) ... Setting up node-inherits (2.0.4-1) ... Setting up node-path-is-absolute (2.0.0-1) ... Setting up node-iconv-lite (0.5.1-3) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up node-safe-buffer (5.2.1+~cs2.1.2-1) ... Setting up node-d3-polygon (1.0.5-3) ... Setting up node-y18n (4.0.0-4) ... Setting up node-d3-quadtree (1.0.7-2) ... Setting up node-balanced-match (1.0.0-1) ... Setting up node-brace-expansion (2.0.0-1) ... Setting up libnotify4:amd64 (0.7.9-3) ... Setting up coinor-libclp1 (1.17.5+repack1-1) ... Setting up node-set-blocking (2.0.0-1.1) ... Setting up node-repeat-string (1.6.1-1) ... 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Setting up python3-idna (2.10-1) ... Setting up python3-wrapt (1.12.1-4+b1) ... Setting up node-chalk (4.1.0-1) ... Setting up git (1:2.30.2-1+deb11u2) ... Setting up node-which (2.0.2+~cs1.3.2-1) ... Setting up node-lcid (3.1.1-1) ... Setting up node-d3-force (1.2.1-2) ... Setting up node-d3-contour (1.3.2-4) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up node-inflight (1.0.6-1.1) ... Setting up node-glob-parent (5.1.1+~5.1.0-2) ... Setting up python3-datrie:amd64 (0.8.2-1+b1) ... Setting up node-d3-dsv (1.1.1-5) ... Setting up node-anymatch (3.1.1+~2.2.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up node-d3-transition (1.3.2-3) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-smmap (4.0.0-1) ... Setting up node-string-width (4.2.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-toposort (1.6-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-configargparse (1.2.3-1) ... Setting up python3-attr (20.3.0-1) ... Setting up node-is-number (7.0.0-1.1) ... Setting up node-end-of-stream (1.4.4-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up node-pump (3.0.0-4) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-pulp (1.6.0+dfsg1-5) ... /usr/lib/python3/dist-packages/pulp/pulp.py:700: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self /usr/lib/python3/dist-packages/pulp/pulp.py:720: SyntaxWarning: "is" with a literal. Did you mean "=="? if other is 0: return self Setting up node-d3-zoom (1.8.3-2) ... Setting up node-find-up (5.0.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up node-d3-fetch (1.2.0-1) ... Setting up node-util (0.10.3-4) ... Setting up python3-gitdb (4.0.5-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-chardet (4.0.0-1) ... Setting up node-wrap-ansi (4.0.0-2) ... Setting up node-glob (7.1.6+~7.1.3-1) ... Setting up node-readdirp (3.5.0-2) ... Setting up python3-git (3.1.14-1) ... Setting up node-get-stream (6.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up node-assert (1.5.0-1) ... Setting up node-d3-brush (1.1.5-2) ... Setting up python3-traitlets (5.0.5-1) ... Setting up node-wide-align (1.1.3-1) ... Setting up python3-jupyter-core (4.7.1-1+deb11u1) ... Setting up node-cliui (4.1.0-2) ... Setting up node-to-regex-range (5.0.1-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Setting up node-d3 (5.16.0-4) ... Setting up node-os-locale (5.0.0-1) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up node-fill-range (7.0.1-2) ... Setting up node-yargs (15.3.1+repack-2) ... Setting up python3-nbformat (5.1.2-1) ... Setting up node-braces (3.0.2+~3.0.0-1) ... Setting up node-chokidar (3.4.3-3) ... Setting up mocha (8.2.1+ds1+~cs29.4.27-3) ... Setting up node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Setting up node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Setting up node-dagre-d3-renderer (0.6.4+dfsg-3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up snakemake (5.24.1-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-y', 'install', 'snakemake'] 0m41.6s INFO: Running scripts post_install 0m41.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_install_exceptions'] 0m41.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_install_exceptions'] 0m41.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m42.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m42.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmph6w8lx30 to bullseye-next 0m42.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main deb http://security.debian.org bullseye-security main deb http://deb.debian.org/debian/ bullseye-updates main deb http://deb.debian.org/debian/ bullseye-proposed-updates main 0m42.6s INFO: Running scripts pre_distupgrade 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_exceptions'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_exceptions'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'update'] 0m44.4s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Get:2 http://deb.debian.org/debian bullseye-updates InRelease [44.1 kB] Get:3 http://security.debian.org bullseye-security InRelease [48.4 kB] Get:4 http://deb.debian.org/debian bullseye-proposed-updates InRelease [54.0 kB] Get:5 http://deb.debian.org/debian bullseye-updates/main amd64 Packages [18.8 kB] Get:6 http://deb.debian.org/debian bullseye-updates/main Translation-en [10.9 kB] Get:7 http://security.debian.org bullseye-security/main amd64 Packages [271 kB] Get:8 http://security.debian.org bullseye-security/main Translation-en [175 kB] Get:9 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages [42.8 kB] Get:10 http://deb.debian.org/debian bullseye-proposed-updates/main Translation-en [26.3 kB] Fetched 691 kB in 1s (754 kB/s) Reading package lists... 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'update'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-yf', 'dist-upgrade'] 0m46.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libgnutls30 libmount1 libsmartcols1 libuuid1 libuv1 mount util-linux 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3596 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 libgnutls30 amd64 3.7.1-5+deb11u5 [1340 kB] Get:2 http://security.debian.org bullseye-security/main amd64 bsdutils amd64 1:2.36.1-8+deb11u2 [149 kB] Get:3 http://security.debian.org bullseye-security/main amd64 util-linux amd64 2.36.1-8+deb11u2 [1142 kB] Get:4 http://security.debian.org bullseye-security/main amd64 mount amd64 2.36.1-8+deb11u2 [186 kB] Get:5 http://security.debian.org bullseye-security/main amd64 libblkid1 amd64 2.36.1-8+deb11u2 [194 kB] Get:6 http://security.debian.org bullseye-security/main amd64 libmount1 amd64 2.36.1-8+deb11u2 [212 kB] Get:7 http://security.debian.org bullseye-security/main amd64 libsmartcols1 amd64 2.36.1-8+deb11u2 [158 kB] Get:8 http://security.debian.org bullseye-security/main amd64 libuuid1 amd64 2.36.1-8+deb11u2 [83.9 kB] Get:9 http://security.debian.org bullseye-security/main amd64 libuv1 amd64 1.40.0-2+deb11u1 [132 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3596 kB in 0s (33.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-8+deb11u2_amd64.deb ... Unpacking bsdutils (1:2.36.1-8+deb11u2) over (1:2.36.1-8+deb11u1) ... Setting up bsdutils (1:2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-8+deb11u2_amd64.deb ... Unpacking util-linux (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up util-linux (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-8+deb11u2_amd64.deb ... Unpacking mount (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Preparing to unpack .../libblkid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libblkid1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u5_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u5) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../libmount1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-8+deb11u2_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-8+deb11u2) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.36.1-8+deb11u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Preparing to unpack .../libuv1_1.40.0-2+deb11u1_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-2+deb11u1) over (1.40.0-2) ... Setting up libuv1:amd64 (1.40.0-2+deb11u1) ... Setting up mount (2.36.1-8+deb11u2) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-yf', 'dist-upgrade'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.1s DUMP: bbf40232d9f3e1bf497d03d645104d5a - 0m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m47.3s DUMP: Package: snakemake Version: 5.24.1-2 Installed-Size: 21382 Maintainer: Debian Med Packaging Team Architecture: all Depends: ca-certificates, libjs-bootstrap, libjs-d3, libjs-jquery, libjs-mathjax, node-dagre-d3-renderer, python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-nbformat, python3-pkg-resources, python3-psutil, python3-pulp (<< 2.0~), python3-ratelimiter, python3-requests, python3-toposort, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 2.4.3-5~), sphinx-rtd-theme-common (>= 0.5.1+dfsg) Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-jinja2, python3-networkx, python3-pygments, python3-pygraphviz, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-drmaa, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Description-en: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Homepage: https://snakemake.readthedocs.io/ Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.24.1-2_all.deb Size: 6107188 MD5sum: 637496914f29fdc326848f8c74959383 SHA256: 9295b92f0191bc35277c3531f223ab947e5f825902cccacb884cccfa5e41ff07 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'show', '--no-all-versions', 'snakemake'] 0m47.3s INFO: apt-cache knows about the following packages: snakemake 0m47.3s INFO: Running scripts pre_install 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_database-server'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_database-server'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_exceptions'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_exceptions'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_extras'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_extras'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy'] 0m47.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy', 'snakemake'] 0m47.5s DUMP: snakemake: Installed: 5.24.1-2 Candidate: 5.24.1-2 Version table: *** 5.24.1-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy', 'snakemake'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-y', 'install', 'snakemake'] 0m48.1s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (5.24.1-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-y', 'install', 'snakemake'] 0m48.1s INFO: Running scripts post_install 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_install_exceptions'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_install_exceptions'] 0m48.1s INFO: Running scripts post_distupgrade 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_exceptions'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m48.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_distupgrade_zz_backports'] 0m48.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m49.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m49.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m50.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m50.1s INFO: Running scripts pre_install 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_database-server'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_database-server'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_exceptions'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_exceptions'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_extras'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_extras'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy'] 0m50.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye-proposed-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-proposed-updates,n=bullseye-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian bullseye-updates/main amd64 Packages release v=11-updates,o=Debian,a=oldstable-updates,n=bullseye-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org bullseye-security/main amd64 Packages release v=11,o=Debian,a=oldstable-security,n=bullseye-security,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy'] 0m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy', 'snakemake'] 0m50.2s DUMP: snakemake: Installed: 5.24.1-2 Candidate: 5.24.1-2 Version table: *** 5.24.1-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 100 /var/lib/dpkg/status 0m50.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-cache', 'policy', 'snakemake'] 0m50.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-y', 'install', 'snakemake=5.24.1-2'] 0m50.7s DUMP: Reading package lists... Building dependency tree... Reading state information... snakemake is already the newest version (5.24.1-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', '-y', 'install', 'snakemake=5.24.1-2'] 0m50.7s INFO: Running scripts post_install 0m50.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_install_exceptions'] 0m50.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_install_exceptions'] 0m50.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m51.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 0m52.0s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m52.1s INFO: /bin converted to /usr/bin by /usr merge 0m52.1s INFO: /lib converted to /usr/lib by /usr merge 0m52.1s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m52.1s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m52.1s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m52.1s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m52.1s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m52.1s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m52.1s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m52.1s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m52.1s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m52.1s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m52.1s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m52.1s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m52.1s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m52.1s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m52.1s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m52.1s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m52.1s INFO: /lib/terminfo/t converted to /usr/lib/terminfo/t by /usr merge 0m52.1s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m52.1s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m52.1s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m52.1s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m52.1s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m52.1s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m52.1s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m52.1s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m52.1s INFO: /sbin converted to /usr/sbin by /usr merge 0m53.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', '-ac', '--ignore-obsolete'] 0m55.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', '-ac', '--ignore-obsolete'] 0m55.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.7s DUMP: 0.15.6 0m55.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m55.7s INFO: Running adequate version 0.15.6 now. 0m55.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'snakemake'] 0m55.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'snakemake'] 0m55.9s INFO: Running scripts pre_remove 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_exceptions'] 1m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/pre_remove_exceptions'] 1m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m2.1s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed ca-certificates ca-certificates 20210119 install ok installed coinor-cbc coinor-cbc 2.10.5+ds1-3 install ok installed coinor-libcbc3:amd64 coinor-libcbc3 2.10.5+ds1-3 install ok installed coinor-libcgl1 coinor-libcgl1 0.60.3+repack1-2 install ok installed coinor-libclp1 coinor-libclp1 1.17.5+repack1-1 install ok installed coinor-libcoinutils3v5 coinor-libcoinutils3v5 2.11.4+repack1-1 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.6+repack1-2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed docutils-common docutils-common 0.16+dfsg-4 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-2 install ok installed fonts-lato fonts-lato 2.0-2.1 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed git git 1:2.30.2-1+deb11u2 install ok installed git-man git-man 1:2.30.2-1+deb11u2 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblas3:amd64 libblas3 3.9.0-3+deb11u1 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbrotli1:amd64 libbrotli1 1.0.9-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-ares2:amd64 libc-ares2 1.17.1-1+deb11u3 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.74.0-1.3+deb11u11 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libdeflate0:amd64 libdeflate0 1.7-1 install ok installed liberror-perl liberror-perl 0.17029-1 install ok installed libexpat1:amd64 libexpat1 2.2.10-2+deb11u5 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.19-2 install ok installed libgdbm6:amd64 libgdbm6 1.19-2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.2+dfsg-1+deb11u1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.2+dfsg-1+deb11u1 install ok installed libgfortran5:amd64 libgfortran5 10.2.1-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.66.8-1+deb11u1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.0.6-4 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-2 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-d3-format libjs-d3-format 1:1.4.1-3 install ok installed libjs-inherits libjs-inherits 2.0.4-1 install ok installed libjs-jquery libjs-jquery 3.5.1+dfsg+~3.5.5-7 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 3.4.3-2 install ok installed libjs-sprintf-js libjs-sprintf-js 1.1.2+ds1-2 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-3 install ok installed libjs-util libjs-util 0.10.3-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblapack3:amd64 liblapack3 3.9.0-3+deb11u1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncursesw6:amd64 libncursesw6 6.2+20201114-2+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.43.0-1+deb11u1 install ok installed libnode72:amd64 libnode72 12.22.12~dfsg-1~deb11u4 install ok installed libnotify-bin libnotify-bin 0.7.9-3 install ok installed libnotify4:amd64 libnotify4 0.7.9-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libpng16-16:amd64 libpng16-16 1.6.37-3 install ok installed libpsl5:amd64 libpsl5 0.21.0-1.2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.9.2-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 10.2.1-6 install ok installed libreadline8:amd64 libreadline8 8.1-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-2.1+deb11u1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-2.1+deb11u1 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.34.1-3 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssh2-1:amd64 libssh2-1 1.9.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libuv1:amd64 libuv1 1.40.0-2+deb11u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libxml2:amd64 libxml2 2.9.10+dfsg-6.7+deb11u4 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.2-1 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed media-types media-types 4.0.0 install ok installed mocha mocha 8.2.1+ds1+~cs29.4.27-3 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed node-ansi-colors node-ansi-colors 4.1.1-2 install ok installed node-ansi-regex node-ansi-regex 5.0.1-1~deb11u1 install ok installed node-ansi-styles node-ansi-styles 4.2.1-1 install ok installed node-anymatch node-anymatch 3.1.1+~2.2.2-1 install ok installed node-argparse node-argparse 2.0.1-1 install ok installed node-assert node-assert 1.5.0-1 install ok installed node-async-each node-async-each 1.0.3-1 install ok installed node-balanced-match node-balanced-match 1.0.0-1 install ok installed node-binary-extensions node-binary-extensions 2.2.0-1 install ok installed node-brace-expansion node-brace-expansion 2.0.0-1 install ok installed node-braces node-braces 3.0.2+~3.0.0-1 install ok installed node-browser-stdout node-browser-stdout 1.3.1-2 install ok installed node-camelcase node-camelcase 6.2.0-2 install ok installed node-chalk node-chalk 4.1.0-1 install ok installed node-chokidar node-chokidar 3.4.3-3 install ok installed node-cliui node-cliui 4.1.0-2 install ok installed node-clone node-clone 2.1.2-2 install ok installed node-color-convert node-color-convert 1.9.3-1 install ok installed node-color-name node-color-name 1.1.4+~1.1.1-1 install ok installed node-commander node-commander 6.2.1-2 install ok installed node-d3 node-d3 5.16.0-4 install ok installed node-d3-array node-d3-array 1.2.4-3 install ok installed node-d3-axis node-d3-axis 1.0.12-3 install ok installed node-d3-brush node-d3-brush 1.1.5-2 install ok installed node-d3-chord node-d3-chord 1.0.6-3 install ok installed node-d3-collection node-d3-collection 1.0.7-3 install ok installed node-d3-color node-d3-color 1.2.8-2 install ok installed node-d3-contour node-d3-contour 1.3.2-4 install ok installed node-d3-dispatch node-d3-dispatch 1.0.6-2 install ok installed node-d3-drag node-d3-drag 1.2.5-2 install ok installed node-d3-dsv node-d3-dsv 1.1.1-5 install ok installed node-d3-ease node-d3-ease 1.0.5-3 install ok installed node-d3-fetch node-d3-fetch 1.2.0-1 install ok installed node-d3-force node-d3-force 1.2.1-2 install ok installed node-d3-format node-d3-format 1:1.4.1-3 install ok installed node-d3-geo node-d3-geo 1.11.9-4 install ok installed node-d3-hierarchy node-d3-hierarchy 1.1.8-3 install ok installed node-d3-interpolate node-d3-interpolate 1.4.0-2 install ok installed node-d3-path node-d3-path 1.0.9-2 install ok installed node-d3-polygon node-d3-polygon 1.0.5-3 install ok installed node-d3-quadtree node-d3-quadtree 1.0.7-2 install ok installed node-d3-queue node-d3-queue 3.0.7-11 install ok installed node-d3-random node-d3-random 1.1.2-3 install ok installed node-d3-scale node-d3-scale 2.2.2-3 install ok installed node-d3-scale-chromatic node-d3-scale-chromatic 1.5.0-2 install ok installed node-d3-selection node-d3-selection 1.4.0-6 install ok installed node-d3-shape node-d3-shape 1.3.7-2 install ok installed node-d3-time node-d3-time 1.0.11-4 install ok installed node-d3-time-format node-d3-time-format 2.1.3-3 install ok installed node-d3-timer node-d3-timer 1.0.10-1 install ok installed node-d3-transition node-d3-transition 1.3.2-3 install ok installed node-d3-voronoi node-d3-voronoi 1.1.4-3 install ok installed node-d3-zoom node-d3-zoom 1.8.3-2 install ok installed node-dagre-d3-renderer node-dagre-d3-renderer 0.6.4+dfsg-3 install ok installed node-dagre-layout node-dagre-layout 0.8.8+really0.8.5+dfsg-4 install ok installed node-debug node-debug 4.3.1+~cs4.1.5-1 install ok installed node-decamelize node-decamelize 4.0.0-1 install ok installed node-defaults node-defaults 1.0.3-2 install ok installed node-diff node-diff 4.0.2~dfsg-2 install ok installed node-end-of-stream node-end-of-stream 1.4.4-1 install ok installed node-escape-string-regexp node-escape-string-regexp 4.0.0-1 install ok installed node-esprima node-esprima 4.0.1+ds+~4.0.2-2 install ok installed node-execa node-execa 4.1.0+dfsg+~cs19.3.6-5 install ok installed node-fill-range node-fill-range 7.0.1-2 install ok installed node-find-up node-find-up 5.0.0-1 install ok installed node-fs.realpath node-fs.realpath 1.0.0-1.1 install ok installed node-get-caller-file node-get-caller-file 1.0.2-1.1 install ok installed node-get-stream node-get-stream 6.0.0-1 install ok installed node-glob node-glob 7.1.6+~7.1.3-1 install ok installed node-glob-parent node-glob-parent 5.1.1+~5.1.0-2 install ok installed node-graceful-fs node-graceful-fs 4.2.4+repack-1 install ok installed node-graphlibrary node-graphlibrary 2.2.0+really2.1.8+dfsg-3 install ok installed node-growl node-growl 1.10.5-2 install ok installed node-has-flag node-has-flag 4.0.0-1 install ok installed node-he node-he 1.2.0-1 install ok installed node-iconv-lite node-iconv-lite 0.5.1-3 install ok installed node-inflight node-inflight 1.0.6-1.1 install ok installed node-inherits node-inherits 2.0.4-1 install ok installed node-invert-kv node-invert-kv 3.0.1-1 install ok installed node-is-binary-path node-is-binary-path 2.1.0-1 install ok installed node-is-buffer node-is-buffer 2.0.5-1 install ok installed node-is-extglob node-is-extglob 2.1.1-1 install ok installed node-is-glob node-is-glob 4.0.1-1 install ok installed node-is-number node-is-number 7.0.0-1.1 install ok installed node-is-plain-obj node-is-plain-obj 3.0.0-1 install ok installed node-is-stream node-is-stream 2.0.0-1 install ok installed node-isexe node-isexe 2.0.0-5 install ok installed node-js-yaml node-js-yaml 3.14.1+dfsg+~3.12.6-2 install ok installed node-kind-of node-kind-of 6.0.3+dfsg-1 install ok installed node-lcid node-lcid 3.1.1-1 install ok installed node-locate-path node-locate-path 6.0.0-1 install ok installed node-lodash node-lodash 4.17.21+dfsg+~cs8.31.173-1 install ok installed node-mem node-mem 1.1.0-1.1 install ok installed node-merge-stream node-merge-stream 2.0.0+~1.1.2-1 install ok installed node-mimic-fn node-mimic-fn 3.1.0-1 install ok installed node-minimatch node-minimatch 3.0.4+~3.0.3-1+deb11u2 install ok installed node-ms node-ms 2.1.3+~cs0.7.31-1 install ok installed node-normalize-path node-normalize-path 3.0.0-2 install ok installed node-npm-run-path node-npm-run-path 2.0.2-2 install ok installed node-object-assign node-object-assign 4.1.1-3 install ok installed node-once node-once 1.4.0-3 install ok installed node-os-locale node-os-locale 5.0.0-1 install ok installed node-p-limit node-p-limit 3.1.0+~cs2.3.0-1 install ok installed node-p-locate node-p-locate 5.0.0-1 install ok installed node-path-dirname node-path-dirname 1.0.2-1.1 install ok installed node-path-exists node-path-exists 4.0.0-2 install ok installed node-path-is-absolute node-path-is-absolute 2.0.0-1 install ok installed node-pump node-pump 3.0.0-4 install ok installed node-randombytes node-randombytes 2.1.0-1 install ok installed node-readdirp node-readdirp 3.5.0-2 install ok installed node-repeat-string node-repeat-string 1.6.1-1 install ok installed node-require-directory node-require-directory 2.1.1-1.1 install ok installed node-require-main-filename node-require-main-filename 2.0.0-1 install ok installed node-rw node-rw 1.3.3-2 install ok installed node-safe-buffer node-safe-buffer 5.2.1+~cs2.1.2-1 install ok installed node-serialize-javascript node-serialize-javascript 5.0.1-2 install ok installed node-set-blocking node-set-blocking 2.0.0-1.1 install ok installed node-set-immediate-shim node-set-immediate-shim 2.0.0-1 install ok installed node-shebang-command node-shebang-command 1.2.0-1.1 install ok installed node-shebang-regex node-shebang-regex 3.0.0-1 install ok installed node-signal-exit node-signal-exit 3.0.3-1 install ok installed node-sprintf-js node-sprintf-js 1.1.2+ds1-2 install ok installed node-string-width node-string-width 4.2.0-1 install ok installed node-strip-ansi node-strip-ansi 6.0.0-2 install ok installed node-strip-json-comments node-strip-json-comments 3.1.1-1 install ok installed node-supports-color node-supports-color 8.1.0+~7.2.0-1 install ok installed node-to-regex-range node-to-regex-range 5.0.1-2 install ok installed node-util node-util 0.10.3-4 install ok installed node-wcwidth.js node-wcwidth.js 1.0.0-1.1 install ok installed node-which node-which 2.0.2+~cs1.3.2-1 install ok installed node-which-module node-which-module 2.0.0-1 install ok installed node-wide-align node-wide-align 1.1.3-1 install ok installed node-wrap-ansi node-wrap-ansi 4.0.0-2 install ok installed node-wrappy node-wrappy 1.0.2-1.1 install ok installed node-y18n node-y18n 4.0.0-4 install ok installed node-yargs node-yargs 15.3.1+repack-2 install ok installed node-yargs-parser node-yargs-parser 18.1.3+~15.0.0-1 install ok installed nodejs nodejs 12.22.12~dfsg-1~deb11u4 install ok installed openssl openssl 1.1.1w-0+deb11u1 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl perl 5.32.1-4+deb11u3 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed python3 python3 3.9.2-3 install ok installed python3-appdirs python3-appdirs 1.4.4-1 install ok installed python3-attr python3-attr 20.3.0-1 install ok installed python3-certifi python3-certifi 2020.6.20-1 install ok installed python3-chardet python3-chardet 4.0.0-1 install ok installed python3-configargparse python3-configargparse 1.2.3-1 install ok installed python3-datrie:amd64 python3-datrie 0.8.2-1+b1 install ok installed python3-distutils python3-distutils 3.9.2-1 install ok installed python3-docutils python3-docutils 0.16+dfsg-4 install ok installed python3-git python3-git 3.1.14-1 install ok installed python3-gitdb python3-gitdb 4.0.5-1 install ok installed python3-idna python3-idna 2.10-1 install ok installed python3-importlib-metadata python3-importlib-metadata 1.6.0-2 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-4 install ok installed python3-jsonschema python3-jsonschema 3.2.0-3 install ok installed python3-jupyter-core python3-jupyter-core 4.7.1-1+deb11u1 install ok installed python3-lib2to3 python3-lib2to3 3.9.2-1 install ok installed python3-minimal python3-minimal 3.9.2-3 install ok installed python3-more-itertools python3-more-itertools 4.2.0-3 install ok installed python3-nbformat python3-nbformat 5.1.2-1 install ok installed python3-pkg-resources python3-pkg-resources 52.0.0-4 install ok installed python3-psutil python3-psutil 5.8.0-1 install ok installed python3-pulp python3-pulp 1.6.0+dfsg1-5 install ok installed python3-pyparsing python3-pyparsing 2.4.7-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.15.5-1+b3 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-1 install ok installed python3-requests python3-requests 2.25.1+dfsg-2 install ok installed python3-roman python3-roman 2.0.0-5 install ok installed python3-setuptools python3-setuptools 52.0.0-4 install ok installed python3-six python3-six 1.16.0-2 install ok installed python3-smmap python3-smmap 4.0.0-1 install ok installed python3-toposort python3-toposort 1.6-1 install ok installed python3-traitlets python3-traitlets 5.0.5-1 install ok installed python3-urllib3 python3-urllib3 1.26.5-1~exp1 install ok installed python3-wrapt python3-wrapt 1.12.1-4+b1 install ok installed python3-yaml python3-yaml 5.3.1-5 install ok installed python3-zipp python3-zipp 1.0.0-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.1-1 install ok installed sed sed 4.7-1 install ok installed sgml-base sgml-base 1.30 install ok installed shared-mime-info shared-mime-info 2.0-1 install ok installed snakemake snakemake 5.24.1-2 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.5.1+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 1m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtiff5:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libxml2:amd64', 'libyaml-0-2:amd64', 'media-types', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python3', 'python3-appdirs', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jsonschema', 'python3-jupyter-core', 'python3-lib2to3', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'xml-core', 'snakemake'] 1m10.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-mathjax git git-man libblas3 libbrotli1 libc-ares2 libcurl3-gnutls libdatrie1 libdeflate0 liberror-perl libexpat1 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libglib2.0-0 libicu67 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-d3-format libjs-inherits libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-sprintf-js libjs-underscore libjs-util liblapack3 libldap-2.4-2 libmpdec3 libncursesw6 libnghttp2-14 libnode72 libnotify-bin libnotify4 libperl5.32 libpng16-16 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libtiff5 libuv1 libwebp6 libxml2 libyaml-0-2 media-types mocha node-ansi-colors node-ansi-regex node-ansi-styles node-anymatch node-argparse node-assert node-async-each node-balanced-match node-binary-extensions node-brace-expansion node-braces node-browser-stdout node-camelcase node-chalk node-chokidar node-cliui node-clone node-color-convert node-color-name node-commander node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord node-d3-collection node-d3-color node-d3-contour node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape node-d3-time node-d3-time-format node-d3-timer node-d3-transition node-d3-voronoi node-d3-zoom node-dagre-d3-renderer node-dagre-layout node-debug node-decamelize node-defaults node-diff node-end-of-stream node-escape-string-regexp node-esprima node-execa node-fill-range node-find-up node-fs.realpath node-get-caller-file node-get-stream node-glob node-glob-parent node-graceful-fs node-graphlibrary node-growl node-has-flag node-he node-iconv-lite node-inflight node-inherits node-invert-kv node-is-binary-path node-is-buffer node-is-extglob node-is-glob node-is-number node-is-plain-obj node-is-stream node-isexe node-js-yaml node-kind-of node-lcid node-locate-path node-lodash node-mem node-merge-stream node-mimic-fn node-minimatch node-ms node-normalize-path node-npm-run-path node-object-assign node-once node-os-locale node-p-limit node-p-locate node-path-dirname node-path-exists node-path-is-absolute node-pump node-randombytes node-readdirp node-repeat-string node-require-directory node-require-main-filename node-rw node-safe-buffer node-serialize-javascript node-set-blocking node-set-immediate-shim node-shebang-command node-shebang-regex node-signal-exit node-sprintf-js node-string-width node-strip-ansi node-strip-json-comments node-supports-color node-to-regex-range node-util node-wcwidth.js node-which node-which-module node-wide-align node-wrap-ansi node-wrappy node-y18n node-yargs node-yargs-parser nodejs openssl perl perl-modules-5.32 python3 python3-appdirs python3-attr python3-certifi python3-chardet python3-configargparse python3-datrie python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-importlib-metadata python3-ipython-genutils python3-jsonschema python3-jupyter-core python3-lib2to3 python3-minimal python3-more-itertools python3-nbformat python3-pkg-resources python3-psutil python3-pulp python3-pyparsing python3-pyrsistent python3-ratelimiter python3-requests python3-roman python3-setuptools python3-six python3-smmap python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.9 python3.9-minimal readline-common sgml-base shared-mime-info snakemake sphinx-rtd-theme-common xml-core 0 upgraded, 0 newly installed, 255 to remove and 0 not upgraded. After this operation, 342 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23289 files and directories currently installed.) Removing snakemake (5.24.1-2) ... Removing python3-requests (2.25.1+dfsg-2) ... Removing python3-pulp (1.6.0+dfsg1-5) ... Removing coinor-cbc (2.10.5+ds1-3) ... Removing coinor-libcbc3:amd64 (2.10.5+ds1-3) ... Removing coinor-libcgl1 (0.60.3+repack1-2) ... Removing coinor-libclp1 (1.17.5+repack1-1) ... Removing coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Removing coinor-libcoinutils3v5 (2.11.4+repack1-1) ... Removing python3-docutils (0.16+dfsg-4) ... Removing docutils-common (0.16+dfsg-4) ... Removing sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing libjs-bootstrap (3.4.1+dfsg-2) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Removing fonts-lato (2.0-2.1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing python3-git (3.1.14-1) ... Removing git (1:2.30.2-1+deb11u2) ... Removing git-man (1:2.30.2-1+deb11u2) ... Removing liblapack3:amd64 (3.9.0-3+deb11u1) ... Removing libblas3:amd64 (3.9.0-3+deb11u1) ... Removing node-dagre-d3-renderer (0.6.4+dfsg-3) ... Removing node-dagre-layout (0.8.8+really0.8.5+dfsg-4) ... Removing node-graphlibrary (2.2.0+really2.1.8+dfsg-3) ... Removing mocha (8.2.1+ds1+~cs29.4.27-3) ... Removing node-yargs (15.3.1+repack-2) ... Removing node-yargs-parser (18.1.3+~15.0.0-1) ... Removing node-y18n (4.0.0-4) ... Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Removing python3-datrie:amd64 (0.8.2-1+b1) ... Removing libdatrie1:amd64 (0.2.13-1) ... Removing node-growl (1.10.5-2) ... Removing libnotify-bin (0.7.9-3) ... Removing libnotify4:amd64 (0.7.9-3) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libdeflate0:amd64 (1.7-1) ... Removing liberror-perl (0.17029-1) ... Removing python3-yaml (5.3.1-5) ... Removing python3-nbformat (5.1.2-1) ... Removing python3-jsonschema (3.2.0-3) ... Removing python3-setuptools (52.0.0-4) ... Removing python3-jupyter-core (4.7.1-1+deb11u1) ... Removing python3-distutils (3.9.2-1) ... Removing python3-wrapt (1.12.1-4+b1) ... Removing python3-traitlets (5.0.5-1) ... Removing perl (5.32.1-4+deb11u3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4:amd64 (1.19-2) ... Removing libgdbm6:amd64 (1.19-2) ... Removing libgdk-pixbuf2.0-common (2.42.2+dfsg-1+deb11u1) ... Removing libgfortran5:amd64 (10.2.1-6) ... Removing shared-mime-info (2.0-1) ... Removing libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... Removing libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:2.0.6-4) ... Removing libjs-d3 (3.5.17-4) ... Removing node-d3 (5.16.0-4) ... Removing node-d3-scale (2.2.2-3) ... Removing node-d3-format (1:1.4.1-3) ... Removing libjs-d3-format (1:1.4.1-3) ... Removing node-assert (1.5.0-1) ... Removing node-util (0.10.3-4) ... Removing libjs-util (0.10.3-4) ... Removing node-glob (7.1.6+~7.1.3-1) ... Removing libjs-sphinxdoc (3.4.3-2) ... Removing libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Removing node-js-yaml (3.14.1+dfsg+~3.12.6-2) ... Removing node-argparse (2.0.1-1) ... Removing node-sprintf-js (1.1.2+ds1-2) ... Removing libjs-sprintf-js (1.1.2+ds1-2) ... Removing libjs-underscore (1.9.1~dfsg-3) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libpng16-16:amd64 (1.6.37-3) ... Removing libpsl5:amd64 (0.21.0-1.2) ... Removing libquadmath0:amd64 (10.2.1-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Removing libssh2-1:amd64 (1.9.0-2) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libyaml-0-2:amd64 (0.2.2-1) ... Removing node-ansi-colors (4.1.1-2) ... Removing node-cliui (4.1.0-2) ... Removing node-wrap-ansi (4.0.0-2) ... Removing node-wide-align (1.1.3-1) ... Removing node-string-width (4.2.0-1) ... Removing node-strip-ansi (6.0.0-2) ... Removing node-ansi-regex (5.0.1-1~deb11u1) ... Removing node-chalk (4.1.0-1) ... Removing node-ansi-styles (4.2.1-1) ... Removing node-chokidar (3.4.3-3) ... Removing node-readdirp (3.5.0-2) ... Removing node-anymatch (3.1.1+~2.2.2-1) ... Removing node-async-each (1.0.3-1) ... Removing node-minimatch (3.0.4+~3.0.3-1+deb11u2) ... Removing node-brace-expansion (2.0.0-1) ... Removing node-balanced-match (1.0.0-1) ... Removing node-is-binary-path (2.1.0-1) ... Removing node-binary-extensions (2.2.0-1) ... Removing node-braces (3.0.2+~3.0.0-1) ... Removing node-browser-stdout (1.3.1-2) ... Removing node-camelcase (6.2.0-2) ... Removing node-wcwidth.js (1.0.0-1.1) ... Removing node-defaults (1.0.3-2) ... Removing node-clone (2.1.2-2) ... Removing node-color-convert (1.9.3-1) ... Removing node-color-name (1.1.4+~1.1.1-1) ... Removing node-d3-fetch (1.2.0-1) ... Removing node-d3-dsv (1.1.1-5) ... Removing node-commander (6.2.1-2) ... Removing node-d3-geo (1.11.9-4) ... Removing node-d3-axis (1.0.12-3) ... Removing node-d3-brush (1.1.5-2) ... Removing node-d3-chord (1.0.6-3) ... Removing node-d3-force (1.2.1-2) ... Removing node-d3-collection (1.0.7-3) ... Removing node-d3-zoom (1.8.3-2) ... Removing node-d3-transition (1.3.2-3) ... Removing node-d3-scale-chromatic (1.5.0-2) ... Removing node-d3-contour (1.3.2-4) ... Removing node-d3-drag (1.2.5-2) ... Removing node-d3-dispatch (1.0.6-2) ... Removing node-d3-ease (1.0.5-3) ... Removing node-d3-hierarchy (1.1.8-3) ... Removing node-d3-shape (1.3.7-2) ... Removing node-d3-path (1.0.9-2) ... Removing node-d3-polygon (1.0.5-3) ... Removing node-d3-quadtree (1.0.7-2) ... Removing node-rw (1.3.3-2) ... Removing node-d3-queue (3.0.7-11) ... Removing node-d3-random (1.1.2-3) ... Removing node-d3-selection (1.4.0-6) ... Removing node-d3-time-format (2.1.3-3) ... Removing node-d3-time (1.0.11-4) ... Removing node-d3-timer (1.0.10-1) ... Removing node-d3-voronoi (1.1.4-3) ... Removing node-debug (4.3.1+~cs4.1.5-1) ... Removing node-decamelize (4.0.0-1) ... Removing node-diff (4.0.2~dfsg-2) ... Removing node-os-locale (5.0.0-1) ... Removing node-execa (4.1.0+dfsg+~cs19.3.6-5) ... Removing node-get-stream (6.0.0-1) ... Removing node-pump (3.0.0-4) ... Removing node-end-of-stream (1.4.4-1) ... Removing node-escape-string-regexp (4.0.0-1) ... Removing node-esprima (4.0.1+ds+~4.0.2-2) ... Removing node-fill-range (7.0.1-2) ... Removing node-find-up (5.0.0-1) ... Removing node-fs.realpath (1.0.0-1.1) ... Removing node-get-caller-file (1.0.2-1.1) ... Removing node-glob-parent (5.1.1+~5.1.0-2) ... Removing node-graceful-fs (4.2.4+repack-1) ... Removing node-supports-color (8.1.0+~7.2.0-1) ... Removing node-has-flag (4.0.0-1) ... Removing node-he (1.2.0-1) ... Removing node-iconv-lite (0.5.1-3) ... Removing node-inflight (1.0.6-1.1) ... Removing node-lcid (3.1.1-1) ... Removing node-invert-kv (3.0.1-1) ... Removing node-to-regex-range (5.0.1-2) ... Removing node-is-number (7.0.0-1.1) ... Removing node-kind-of (6.0.3+dfsg-1) ... Removing node-is-buffer (2.0.5-1) ... Removing node-is-glob (4.0.1-1) ... Removing node-is-extglob (2.1.1-1) ... Removing node-is-plain-obj (3.0.0-1) ... Removing node-is-stream (2.0.0-1) ... Removing node-which (2.0.2+~cs1.3.2-1) ... Removing node-isexe (2.0.0-5) ... Removing node-locate-path (6.0.0-1) ... Removing node-lodash (4.17.21+dfsg+~cs8.31.173-1) ... Removing node-mem (1.1.0-1.1) ... Removing node-merge-stream (2.0.0+~1.1.2-1) ... Removing node-mimic-fn (3.1.0-1) ... Removing node-ms (2.1.3+~cs0.7.31-1) ... Removing node-normalize-path (3.0.0-2) ... Removing node-npm-run-path (2.0.2-2) ... Removing node-object-assign (4.1.1-3) ... Removing node-once (1.4.0-3) ... Removing node-p-locate (5.0.0-1) ... Removing node-p-limit (3.1.0+~cs2.3.0-1) ... Removing node-path-dirname (1.0.2-1.1) ... Removing node-path-exists (4.0.0-2) ... Removing node-path-is-absolute (2.0.0-1) ... Removing node-serialize-javascript (5.0.1-2) ... Removing node-randombytes (2.1.0-1) ... Removing node-repeat-string (1.6.1-1) ... Removing node-require-directory (2.1.1-1.1) ... Removing node-require-main-filename (2.0.0-1) ... Removing node-safe-buffer (5.2.1+~cs2.1.2-1) ... Removing node-set-blocking (2.0.0-1.1) ... Removing node-set-immediate-shim (2.0.0-1) ... Removing node-shebang-command (1.2.0-1.1) ... Removing node-shebang-regex (3.0.0-1) ... Removing node-signal-exit (3.0.3-1) ... Removing node-strip-json-comments (3.1.1-1) ... Removing node-which-module (2.0.0-1) ... Removing node-wrappy (1.0.2-1.1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-appdirs (1.4.4-1) ... Removing python3-attr (20.3.0-1) ... Removing python3-certifi (2020.6.20-1) ... Removing python3-chardet (4.0.0-1) ... Removing python3-configargparse (1.2.3-1) ... Removing python3-gitdb (4.0.5-1) ... Removing python3-idna (2.10-1) ... Removing python3-importlib-metadata (1.6.0-2) ... Removing python3-ipython-genutils (0.2.0-4) ... Removing python3-lib2to3 (3.9.2-1) ... Removing python3-zipp (1.0.0-3) ... Removing python3-more-itertools (4.2.0-3) ... Removing python3-pkg-resources (52.0.0-4) ... Removing python3-psutil (5.8.0-1) ... Removing python3-pyparsing (2.4.7-1) ... Removing python3-pyrsistent:amd64 (0.15.5-1+b3) ... Removing python3-ratelimiter (1.2.0.post0-1) ... Removing python3-roman (2.0.0-5) ... Removing python3-urllib3 (1.26.5-1~exp1) ... Removing python3-six (1.16.0-2) ... Removing python3-smmap (4.0.0-1) ... Removing python3-toposort (1.6-1) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.30) ... Removing ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3 (3.9.2-3) ... Removing python3-minimal (3.9.2-3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libexpat1:amd64 (2.2.10-2+deb11u5) ... Removing node-inherits (2.0.4-1) ... Removing libjs-inherits (2.0.4-1) ... Removing libpython3-stdlib:amd64 (3.9.2-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.1-1) ... Removing libsqlite3-0:amd64 (3.34.1-3) ... Removing media-types (4.0.0) ... Removing node-d3-array (1.2.4-3) ... Removing node-d3-interpolate (1.4.0-2) ... Removing node-d3-color (1.2.8-2) ... Removing openssl (1.1.1w-0+deb11u1) ... Removing readline-common (8.1-1) ... Removing nodejs (12.22.12~dfsg-1~deb11u4) ... Removing libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Removing libbrotli1:amd64 (1.0.9-2+b2) ... Removing libc-ares2:amd64 (1.17.1-1+deb11u3) ... Removing libicu67:amd64 (67.1-7) ... Removing libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Removing libuv1:amd64 (1.40.0-2+deb11u1) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... 1m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'remove', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtiff5:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libxml2:amd64', 'libyaml-0-2:amd64', 'media-types', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python3', 'python3-appdirs', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jsonschema', 'python3-jupyter-core', 'python3-lib2to3', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'xml-core', 'snakemake'] 1m10.0s INFO: Running scripts post_remove 1m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_remove_exceptions'] 1m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_remove_exceptions'] 1m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtiff5:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libxml2:amd64', 'libyaml-0-2:amd64', 'media-types', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python3', 'python3-appdirs', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jsonschema', 'python3-jupyter-core', 'python3-lib2to3', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'xml-core'] 1m10.4s DUMP: (Reading database ... 6693 files and directories currently installed.) Purging configuration files for ca-certificates (20210119) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which isn't installed dpkg: warning: ignoring request to remove coinor-libcbc3 which isn't installed dpkg: warning: ignoring request to remove coinor-libcgl1 which isn't installed dpkg: warning: ignoring request to remove coinor-libclp1 which isn't installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which isn't installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which isn't installed Purging configuration files for docutils-common (0.16+dfsg-4) ... Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed Purging configuration files for git (1:2.30.2-1+deb11u2) ... dpkg: warning: ignoring request to remove git-man which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.2+dfsg-1+deb11u1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-d3-format which isn't installed dpkg: warning: ignoring request to remove libjs-inherits which isn't installed Purging configuration files for libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-sprintf-js which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjs-util which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnode72 which isn't installed dpkg: warning: ignoring request to remove libnotify-bin which isn't installed dpkg: warning: ignoring request to remove libnotify4 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (4.0.0) ... dpkg: warning: ignoring request to remove mocha which isn't installed dpkg: warning: ignoring request to remove node-ansi-colors which isn't installed dpkg: warning: ignoring request to remove node-ansi-regex which isn't installed dpkg: warning: ignoring request to remove node-ansi-styles which isn't installed dpkg: warning: ignoring request to remove node-anymatch which isn't installed dpkg: warning: ignoring request to remove node-argparse which isn't installed dpkg: warning: ignoring request to remove node-assert which isn't installed dpkg: warning: ignoring request to remove node-async-each which isn't installed dpkg: warning: ignoring request to remove node-balanced-match which isn't installed dpkg: warning: ignoring request to remove node-binary-extensions which isn't installed dpkg: warning: ignoring request to remove node-brace-expansion which isn't installed dpkg: warning: ignoring request to remove node-braces which isn't installed dpkg: warning: ignoring request to remove node-browser-stdout which isn't installed dpkg: warning: ignoring request to remove node-camelcase which isn't installed dpkg: warning: ignoring request to remove node-chalk which isn't installed dpkg: warning: ignoring request to remove node-chokidar which isn't installed dpkg: warning: ignoring request to remove node-cliui which isn't installed dpkg: warning: ignoring request to remove node-clone which isn't installed dpkg: warning: ignoring request to remove node-color-convert which isn't installed dpkg: warning: ignoring request to remove node-color-name which isn't installed dpkg: warning: ignoring request to remove node-commander which isn't installed dpkg: warning: ignoring request to remove node-d3 which isn't installed dpkg: warning: ignoring request to remove node-d3-array which isn't installed dpkg: warning: ignoring request to remove node-d3-axis which isn't installed dpkg: warning: ignoring request to remove node-d3-brush which isn't installed dpkg: warning: ignoring request to remove node-d3-chord which isn't installed dpkg: warning: ignoring request to remove node-d3-collection which isn't installed dpkg: warning: ignoring request to remove node-d3-color which isn't installed dpkg: warning: ignoring request to remove node-d3-contour which isn't installed dpkg: warning: ignoring request to remove node-d3-dispatch which isn't installed dpkg: warning: ignoring request to remove node-d3-drag which isn't installed dpkg: warning: ignoring request to remove node-d3-dsv which isn't installed dpkg: warning: ignoring request to remove node-d3-ease which isn't installed dpkg: warning: ignoring request to remove node-d3-fetch which isn't installed dpkg: warning: ignoring request to remove node-d3-force which isn't installed dpkg: warning: ignoring request to remove node-d3-format which isn't installed dpkg: warning: ignoring request to remove node-d3-geo which isn't installed dpkg: warning: ignoring request to remove node-d3-hierarchy which isn't installed dpkg: warning: ignoring request to remove node-d3-interpolate which isn't installed dpkg: warning: ignoring request to remove node-d3-path which isn't installed dpkg: warning: ignoring request to remove node-d3-polygon which isn't installed dpkg: warning: ignoring request to remove node-d3-quadtree which isn't installed dpkg: warning: ignoring request to remove node-d3-queue which isn't installed dpkg: warning: ignoring request to remove node-d3-random which isn't installed dpkg: warning: ignoring request to remove node-d3-scale which isn't installed dpkg: warning: ignoring request to remove node-d3-scale-chromatic which isn't installed dpkg: warning: ignoring request to remove node-d3-selection which isn't installed dpkg: warning: ignoring request to remove node-d3-shape which isn't installed dpkg: warning: ignoring request to remove node-d3-time which isn't installed dpkg: warning: ignoring request to remove node-d3-time-format which isn't installed dpkg: warning: ignoring request to remove node-d3-timer which isn't installed dpkg: warning: ignoring request to remove node-d3-transition which isn't installed dpkg: warning: ignoring request to remove node-d3-voronoi which isn't installed dpkg: warning: ignoring request to remove node-d3-zoom which isn't installed dpkg: warning: ignoring request to remove node-dagre-d3-renderer which isn't installed dpkg: warning: ignoring request to remove node-dagre-layout which isn't installed dpkg: warning: ignoring request to remove node-debug which isn't installed dpkg: warning: ignoring request to remove node-decamelize which isn't installed dpkg: warning: ignoring request to remove node-defaults which isn't installed dpkg: warning: ignoring request to remove node-diff which isn't installed dpkg: warning: ignoring request to remove node-end-of-stream which isn't installed dpkg: warning: ignoring request to remove node-escape-string-regexp which isn't installed dpkg: warning: ignoring request to remove node-esprima which isn't installed dpkg: warning: ignoring request to remove node-execa which isn't installed dpkg: warning: ignoring request to remove node-fill-range which isn't installed dpkg: warning: ignoring request to remove node-find-up which isn't installed dpkg: warning: ignoring request to remove node-fs.realpath which isn't installed dpkg: warning: ignoring request to remove node-get-caller-file which isn't installed dpkg: warning: ignoring request to remove node-get-stream which isn't installed dpkg: warning: ignoring request to remove node-glob which isn't installed dpkg: warning: ignoring request to remove node-glob-parent which isn't installed dpkg: warning: ignoring request to remove node-graceful-fs which isn't installed dpkg: warning: ignoring request to remove node-graphlibrary which isn't installed dpkg: warning: ignoring request to remove node-growl which isn't installed dpkg: warning: ignoring request to remove node-has-flag which isn't installed dpkg: warning: ignoring request to remove node-he which isn't installed dpkg: warning: ignoring request to remove node-iconv-lite which isn't installed dpkg: warning: ignoring request to remove node-inflight which isn't installed dpkg: warning: ignoring request to remove node-inherits which isn't installed dpkg: warning: ignoring request to remove node-invert-kv which isn't installed dpkg: warning: ignoring request to remove node-is-binary-path which isn't installed dpkg: warning: ignoring request to remove node-is-buffer which isn't installed dpkg: warning: ignoring request to remove node-is-extglob which isn't installed dpkg: warning: ignoring request to remove node-is-glob which isn't installed dpkg: warning: ignoring request to remove node-is-number which isn't installed dpkg: warning: ignoring request to remove node-is-plain-obj which isn't installed dpkg: warning: ignoring request to remove node-is-stream which isn't installed dpkg: warning: ignoring request to remove node-isexe which isn't installed dpkg: warning: ignoring request to remove node-js-yaml which isn't installed dpkg: warning: ignoring request to remove node-kind-of which isn't installed dpkg: warning: ignoring request to remove node-lcid which isn't installed dpkg: warning: ignoring request to remove node-locate-path which isn't installed dpkg: warning: ignoring request to remove node-lodash which isn't installed dpkg: warning: ignoring request to remove node-mem which isn't installed dpkg: warning: ignoring request to remove node-merge-stream which isn't installed dpkg: warning: ignoring request to remove node-mimic-fn which isn't installed dpkg: warning: ignoring request to remove node-minimatch which isn't installed dpkg: warning: ignoring request to remove node-ms which isn't installed dpkg: warning: ignoring request to remove node-normalize-path which isn't installed dpkg: warning: ignoring request to remove node-npm-run-path which isn't installed dpkg: warning: ignoring request to remove node-object-assign which isn't installed dpkg: warning: ignoring request to remove node-once which isn't installed dpkg: warning: ignoring request to remove node-os-locale which isn't installed dpkg: warning: ignoring request to remove node-p-limit which isn't installed dpkg: warning: ignoring request to remove node-p-locate which isn't installed dpkg: warning: ignoring request to remove node-path-dirname which isn't installed dpkg: warning: ignoring request to remove node-path-exists which isn't installed dpkg: warning: ignoring request to remove node-path-is-absolute which isn't installed dpkg: warning: ignoring request to remove node-pump which isn't installed dpkg: warning: ignoring request to remove node-randombytes which isn't installed dpkg: warning: ignoring request to remove node-readdirp which isn't installed dpkg: warning: ignoring request to remove node-repeat-string which isn't installed dpkg: warning: ignoring request to remove node-require-directory which isn't installed dpkg: warning: ignoring request to remove node-require-main-filename which isn't installed dpkg: warning: ignoring request to remove node-rw which isn't installed dpkg: warning: ignoring request to remove node-safe-buffer which isn't installed dpkg: warning: ignoring request to remove node-serialize-javascript which isn't installed dpkg: warning: ignoring request to remove node-set-blocking which isn't installed dpkg: warning: ignoring request to remove node-set-immediate-shim which isn't installed dpkg: warning: ignoring request to remove node-shebang-command which isn't installed dpkg: warning: ignoring request to remove node-shebang-regex which isn't installed dpkg: warning: ignoring request to remove node-signal-exit which isn't installed Purging configuration files for node-sprintf-js (1.1.2+ds1-2) ... dpkg: warning: ignoring request to remove node-string-width which isn't installed dpkg: warning: ignoring request to remove node-strip-ansi which isn't installed dpkg: warning: ignoring request to remove node-strip-json-comments which isn't installed dpkg: warning: ignoring request to remove node-supports-color which isn't installed dpkg: warning: ignoring request to remove node-to-regex-range which isn't installed dpkg: warning: ignoring request to remove node-util which isn't installed dpkg: warning: ignoring request to remove node-wcwidth.js which isn't installed dpkg: warning: ignoring request to remove node-which which isn't installed dpkg: warning: ignoring request to remove node-which-module which isn't installed dpkg: warning: ignoring request to remove node-wide-align which isn't installed dpkg: warning: ignoring request to remove node-wrap-ansi which isn't installed dpkg: warning: ignoring request to remove node-wrappy which isn't installed dpkg: warning: ignoring request to remove node-y18n which isn't installed dpkg: warning: ignoring request to remove node-yargs which isn't installed dpkg: warning: ignoring request to remove node-yargs-parser which isn't installed dpkg: warning: ignoring request to remove nodejs which isn't installed Purging configuration files for openssl (1.1.1w-0+deb11u1) ... Purging configuration files for perl (5.32.1-4+deb11u3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for python3 (3.9.2-3) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-ipython-genutils which isn't installed Purging configuration files for python3-jsonschema (3.2.0-3) ... dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed Purging configuration files for python3-pulp (1.6.0+dfsg1-5) ... dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-toposort which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.1-1) ... Purging configuration files for sgml-base (1.30) ... Purging configuration files for shared-mime-info (2.0-1) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3:amd64', 'coinor-libcgl1', 'coinor-libclp1', 'coinor-libcoinutils3v5', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-mathjax', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libc-ares2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libicu67:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-d3', 'libjs-d3-format', 'libjs-inherits', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-sprintf-js', 'libjs-underscore', 'libjs-util', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode72:amd64', 'libnotify-bin', 'libnotify4:amd64', 'libperl5.32:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtiff5:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libxml2:amd64', 'libyaml-0-2:amd64', 'media-types', 'mocha', 'node-ansi-colors', 'node-ansi-regex', 'node-ansi-styles', 'node-anymatch', 'node-argparse', 'node-assert', 'node-async-each', 'node-balanced-match', 'node-binary-extensions', 'node-brace-expansion', 'node-braces', 'node-browser-stdout', 'node-camelcase', 'node-chalk', 'node-chokidar', 'node-cliui', 'node-clone', 'node-color-convert', 'node-color-name', 'node-commander', 'node-d3', 'node-d3-array', 'node-d3-axis', 'node-d3-brush', 'node-d3-chord', 'node-d3-collection', 'node-d3-color', 'node-d3-contour', 'node-d3-dispatch', 'node-d3-drag', 'node-d3-dsv', 'node-d3-ease', 'node-d3-fetch', 'node-d3-force', 'node-d3-format', 'node-d3-geo', 'node-d3-hierarchy', 'node-d3-interpolate', 'node-d3-path', 'node-d3-polygon', 'node-d3-quadtree', 'node-d3-queue', 'node-d3-random', 'node-d3-scale', 'node-d3-scale-chromatic', 'node-d3-selection', 'node-d3-shape', 'node-d3-time', 'node-d3-time-format', 'node-d3-timer', 'node-d3-transition', 'node-d3-voronoi', 'node-d3-zoom', 'node-dagre-d3-renderer', 'node-dagre-layout', 'node-debug', 'node-decamelize', 'node-defaults', 'node-diff', 'node-end-of-stream', 'node-escape-string-regexp', 'node-esprima', 'node-execa', 'node-fill-range', 'node-find-up', 'node-fs.realpath', 'node-get-caller-file', 'node-get-stream', 'node-glob', 'node-glob-parent', 'node-graceful-fs', 'node-graphlibrary', 'node-growl', 'node-has-flag', 'node-he', 'node-iconv-lite', 'node-inflight', 'node-inherits', 'node-invert-kv', 'node-is-binary-path', 'node-is-buffer', 'node-is-extglob', 'node-is-glob', 'node-is-number', 'node-is-plain-obj', 'node-is-stream', 'node-isexe', 'node-js-yaml', 'node-kind-of', 'node-lcid', 'node-locate-path', 'node-lodash', 'node-mem', 'node-merge-stream', 'node-mimic-fn', 'node-minimatch', 'node-ms', 'node-normalize-path', 'node-npm-run-path', 'node-object-assign', 'node-once', 'node-os-locale', 'node-p-limit', 'node-p-locate', 'node-path-dirname', 'node-path-exists', 'node-path-is-absolute', 'node-pump', 'node-randombytes', 'node-readdirp', 'node-repeat-string', 'node-require-directory', 'node-require-main-filename', 'node-rw', 'node-safe-buffer', 'node-serialize-javascript', 'node-set-blocking', 'node-set-immediate-shim', 'node-shebang-command', 'node-shebang-regex', 'node-signal-exit', 'node-sprintf-js', 'node-string-width', 'node-strip-ansi', 'node-strip-json-comments', 'node-supports-color', 'node-to-regex-range', 'node-util', 'node-wcwidth.js', 'node-which', 'node-which-module', 'node-wide-align', 'node-wrap-ansi', 'node-wrappy', 'node-y18n', 'node-yargs', 'node-yargs-parser', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'python3', 'python3-appdirs', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-configargparse', 'python3-datrie:amd64', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jsonschema', 'python3-jupyter-core', 'python3-lib2to3', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-pkg-resources', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-ratelimiter', 'python3-requests', 'python3-roman', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'shared-mime-info', 'sphinx-rtd-theme-common', 'xml-core'] 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--purge', 'snakemake'] 1m10.4s DUMP: dpkg: warning: ignoring request to remove snakemake which isn't installed 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--purge', 'snakemake'] 1m10.4s INFO: Running scripts post_purge 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_purge_exceptions'] 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_purge_exceptions'] 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--purge', '--pending'] 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--purge', '--pending'] 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--remove', '--pending'] 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg', '--remove', '--pending'] 1m10.4s INFO: Running scripts post_test 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_test_exceptions'] 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'tmp/scripts/post_test_exceptions'] 1m10.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 1m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 1m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg-divert', '--list'] 1m10.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'dpkg-divert', '--list'] 1m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'clean'] 1m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6w8lx30', 'apt-get', 'clean'] 1m10.9s DEBUG: Recording chroot state 1m11.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/shm'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/shm'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/console'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/console'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/ptmx'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/ptmx'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/pts'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/dev/pts'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/proc'] 1m12.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6w8lx30/proc'] 1m12.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 1m12.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph6w8lx30'] 1m12.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph6w8lx30 1m12.1s INFO: PASS: Upgrading between Debian distributions. 1m12.1s INFO: PASS: All tests. 1m12.1s INFO: piuparts run ends. ret=0 End: 2024-04-18 04:45:30 GMT