Start: 2024-09-28 04:59:18 GMT Package: changeo Version: 0.4.5-1 Installed-Size: 620 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-numpy, python3-pandas, python3-pkg-resources, python3-scipy, python3-yaml, python3:any Recommends: python3-biopython (>= 1.65), python3-pandas (>= 0.15), python3-scipy (>= 0.14), python3-presto, python3-airr Description: Repertoire clonal assignment toolkit (Python 3) Homepage: http://changeo.readthedocs.io Description-md5: f7df938dee11ca49f4c4cdf5a450df24 Section: science Priority: optional Filename: pool/main/c/changeo/changeo_0.4.5-1_all.deb Size: 90088 MD5sum: dcc9e67e3aaefa574df8d150f82f6ea8 SHA256: 4e7c53af6d0d9c005db86298a4bee2e56125fa5a1df23e12f4bf6380a4a039cc Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt changeo=0.4.5-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt changeo=0.4.5-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpb96wrh9b 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpb96wrh9b 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpb96wrh9b/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'update'] 0m1.2s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'update'] 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', '-yf', 'dist-upgrade'] 0m1.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', '-yf', 'dist-upgrade'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.7s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.7s INFO: Running scripts post_setup 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_dummy_users'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_dummy_users'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_forbid_home'] 0m2.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_forbid_home'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'clean'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'clean'] 0m2.8s DEBUG: Recording chroot state 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-divert', '--list'] 0m3.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-divert', '--list'] 0m3.2s INFO: Running scripts is_testable 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s INFO: apt-cache does not know about any of the requested packages 0m3.2s INFO: Running scripts pre_test 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_test_root_password'] 0m3.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_test_root_password'] 0m3.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 0m3.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 0m4.2s DEBUG: No broken symlinks as far as we can find. 0m4.2s INFO: Running scripts pre_install 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_database-server'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_extras'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 0m5.2s DEBUG: No broken symlinks as far as we can find. 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-cache', 'policy'] 0m5.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-cache', 'policy'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-cache', 'policy', 'changeo'] 0m5.8s DUMP: changeo: Installed: (none) Candidate: 0.4.5-1 Version table: 0.4.5-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-cache', 'policy', 'changeo'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', '-y', 'install', 'changeo=0.4.5-1'] 0m42.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt bzip2 cpp cpp-8 file fontconfig-config fonts-lyx g++ g++-8 gcc gcc-8 gsfonts javascript-common libaec0 libasan5 libatomic1 libbinutils libblas3 libblosc1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libexpat1 libfontconfig1 libfreetype6 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libhdf5-103 libicu63 libimagequant0 libisl19 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 liblmdb0 liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpc3 libmpdec2 libmpfr6 libmpx2 libperl5.28 libpng16-16 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsnappy1v5 libsqlite3-0 libssl1.1 libstdc++-8-dev libsz2 libtcl8.6 libtiff5 libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 linux-libc-dev lsb-base manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules-5.28 python python-biopython python-biopython-doc python-matplotlib-data python-minimal python-numpy python-olefile python-pil python-pkg-resources python-renderpm python-reportlab python-reportlab-accel python-tables-data python2 python2-minimal python2.7 python2.7-minimal python3 python3-airr python3-biopython python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-html5lib python3-kiwisolver python3-lxml python3-matplotlib python3-minimal python3-numexpr python3-numpy python3-olefile python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-presto python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-tz python3-webencodings python3-yaml python3-yamlordereddictloader python3.7 python3.7-minimal readline-common sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xz-utils Suggested packages: binutils-doc blt-demo bzip2-doc cpp-doc gcc-8-locales g++-multilib g++-8-multilib gcc-8-doc libstdc++6-8-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-8-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg apache2 | lighttpd | httpd glibc-doc gdbm-l10n libjs-jquery-ui-docs liblcms2-utils libstdc++-8-doc tcl8.6 tk8.6 man-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl liblocale-codes-perl python-doc python-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python-mysqldb python-matplotlib python-rdflib python-psycopg2 python-scipy raxml samtools t-coffee wise w3-dtd-mathml gfortran python-dev python-pytest python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg python-setuptools python-renderpm-dbg pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2-doc python2.7-doc binfmt-support python3-doc python3-venv python3-mysqldb python3-rdflib python3-psycopg2 python-cycler-doc python3-genshi python3-lxml-dbg python-lxml-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt4 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python3-dev python3-pytest python3-numpy-dbg python-pandas-doc python3-pil-dbg python3-setuptools python-pyparsing-doc python3-renderpm-dbg python3-egenix-mxtexttools python-scipy-doc python-tables-doc python3-netcdf4 vitables tix python3-tk-dbg python3.7-venv python3.7-doc readline-doc The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu blt bzip2 changeo cpp cpp-8 file fontconfig-config fonts-lyx g++ g++-8 gcc gcc-8 gsfonts javascript-common libaec0 libasan5 libatomic1 libbinutils libblas3 libblosc1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libexpat1 libfontconfig1 libfreetype6 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libhdf5-103 libicu63 libimagequant0 libisl19 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 liblmdb0 liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpc3 libmpdec2 libmpfr6 libmpx2 libperl5.28 libpng16-16 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsnappy1v5 libsqlite3-0 libssl1.1 libstdc++-8-dev libsz2 libtcl8.6 libtiff5 libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 linux-libc-dev lsb-base manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules-5.28 python python-biopython python-biopython-doc python-matplotlib-data python-minimal python-numpy python-olefile python-pil python-pkg-resources python-renderpm python-reportlab python-reportlab-accel python-tables-data python2 python2-minimal python2.7 python2.7-minimal python3 python3-airr python3-biopython python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-html5lib python3-kiwisolver python3-lxml python3-matplotlib python3-minimal python3-numexpr python3-numpy python3-olefile python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-presto python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-tz python3-webencodings python3-yaml python3-yamlordereddictloader python3.7 python3.7-minimal readline-common sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xz-utils 0 upgraded, 165 newly installed, 0 to remove and 0 not upgraded. Need to get 157 MB of archives. After this operation, 614 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:7 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:8 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:9 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:11 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:13 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:30 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:32 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:35 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:36 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:37 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:38 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:39 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:41 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:42 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:46 http://deb.debian.org/debian buster/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:47 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:58 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:59 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:62 http://deb.debian.org/debian buster/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [587 kB] Get:63 http://deb.debian.org/debian buster/main amd64 blt amd64 2.5.3+dfsg-4 [14.8 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:67 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:68 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:69 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:70 http://deb.debian.org/debian buster/main amd64 python3-reportlab-accel amd64 3.5.13-1+deb10u1 [35.3 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:73 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:79 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:80 http://deb.debian.org/debian buster/main amd64 python3-reportlab all 3.5.13-1+deb10u1 [541 kB] Get:81 http://deb.debian.org/debian buster/main amd64 python3-biopython amd64 1.73+dfsg-1 [1287 kB] Get:82 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:83 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:84 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get:85 http://deb.debian.org/debian buster/main amd64 python3-pandas-lib amd64 0.23.3+dfsg-3 [3475 kB] Get:86 http://deb.debian.org/debian buster/main amd64 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get:87 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:88 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:89 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:90 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:91 http://deb.debian.org/debian buster/main amd64 changeo all 0.4.5-1 [90.1 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:95 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:96 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:97 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:102 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:103 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:108 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:109 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:110 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:111 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:114 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:115 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:116 http://deb.debian.org/debian buster/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get:117 http://deb.debian.org/debian buster/main amd64 javascript-common all 11 [6120 B] Get:118 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libsnappy1v5 amd64 1.1.7-1 [17.0 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libblosc1 amd64 1.15.1+ds1-1 [44.9 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:122 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:123 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:125 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:126 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:127 http://deb.debian.org/debian buster/main amd64 liblzo2-2 amd64 2.10-0.1 [56.1 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:133 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:134 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:135 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:136 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get:137 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get:138 http://deb.debian.org/debian buster/main amd64 python-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:139 http://deb.debian.org/debian buster/main amd64 python-reportlab-accel amd64 3.5.13-1+deb10u1 [39.8 kB] Get:140 http://deb.debian.org/debian buster/main amd64 python-reportlab all 3.5.13-1+deb10u1 [545 kB] Get:141 http://deb.debian.org/debian buster/main amd64 python-biopython amd64 1.73+dfsg-1 [1334 kB] Get:142 http://deb.debian.org/debian buster/main amd64 python-biopython-doc all 1.73+dfsg-1 [14.1 MB] Get:143 http://deb.debian.org/debian buster/main amd64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get:144 http://deb.debian.org/debian buster/main amd64 python-olefile all 0.46-1 [35.9 kB] Get:145 http://deb.debian.org/debian buster/main amd64 python-renderpm amd64 3.5.13-1+deb10u1 [76.6 kB] Get:146 http://deb.debian.org/debian buster/main amd64 python-tables-data all 3.4.4-2 [53.1 kB] Get:147 http://deb.debian.org/debian buster/main amd64 python3-yamlordereddictloader all 0.4.0-1 [4880 B] Get:148 http://deb.debian.org/debian buster/main amd64 python3-airr all 1.2.1-2 [22.1 kB] Get:149 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:150 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:151 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:152 http://deb.debian.org/debian buster/main amd64 python3-cycler all 0.10.0-1 [7556 B] Get:153 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:154 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:155 http://deb.debian.org/debian buster/main amd64 python3-kiwisolver amd64 1.0.1-2+b1 [65.4 kB] Get:156 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:157 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:158 http://deb.debian.org/debian buster/main amd64 python3-matplotlib amd64 3.0.2-2 [5353 kB] Get:159 http://deb.debian.org/debian buster/main amd64 python3-numexpr amd64 2.6.9-1 [140 kB] Get:160 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:161 http://deb.debian.org/debian buster/main amd64 python3-presto all 0.5.10-1 [70.7 kB] Get:162 http://deb.debian.org/debian buster/main amd64 python3-renderpm amd64 3.5.13-1+deb10u1 [76.8 kB] Get:163 http://deb.debian.org/debian buster/main amd64 python3-tables-lib amd64 3.4.4-2 [438 kB] Get:164 http://deb.debian.org/debian buster/main amd64 python3-tables all 3.4.4-2 [342 kB] Get:165 http://deb.debian.org/debian buster/main amd64 python3-tk amd64 3.7.3-1 [97.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 157 MB in 2s (70.8 MB/s) Selecting previously unselected package perl-modules-5.28. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6464 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.28_5.28.1-6+deb10u1_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6+deb10u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-4_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-4) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up javascript-common (11) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Setting up lsb-base (10.2019051400) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up manpages (4.16-2) ... Setting up fonts-lyx (2.3.2-1) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up binutils-common:amd64 (2.31.1-16) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up liblzo2-2:amd64 (2.10-0.1) ... Setting up file (1:5.35-4+deb10u2) ... 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Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up ucf (3.0038+nmu1) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up cpp (4:8.3.0-1) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gcc-8 (8.3.0-6) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up python2 (2.7.16-1) ... Setting up python3-webencodings (0.5.1-1) ... Setting up python3-tz (2019.1-1) ... Setting up gcc (4:8.3.0-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Setting up python3-html5lib (1.0.1-1) ... Setting up python3-reportlab (3.5.13-1+deb10u1) ... Setting up g++-8 (8.3.0-6) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python (2.7.16-1) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up python3-renderpm:amd64 (3.5.13-1+deb10u1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up python3-olefile (0.46-1) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up python3-yaml (3.13-2) ... Setting up python-pil:amd64 (5.4.1-2+deb10u3) ... Setting up python3-bs4 (4.7.1-1) ... Setting up python-renderpm:amd64 (3.5.13-1+deb10u1) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up python3-yamlordereddictloader (0.4.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up g++ (4:8.3.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Setting up python3-biopython (1.73+dfsg-1) ... Setting up python-olefile (0.46-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-scipy (1.1.0-7) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python3-tables-lib (3.4.4-2) ... Setting up blt (2.5.3+dfsg-4) ... Setting up python3-pandas-lib (0.23.3+dfsg-3) ... Setting up python3-tk:amd64 (3.7.3-1) ... Setting up python3-pandas (0.23.3+dfsg-3) ... Setting up changeo (0.4.5-1) ... Setting up python3-numexpr (2.6.9-1) ... Setting up python-reportlab (3.5.13-1+deb10u1) ... Setting up python3-presto (0.5.10-1) ... Setting up python3-tables (3.4.4-2) ... Setting up python3-airr (1.2.1-2) ... Setting up python-biopython (1.73+dfsg-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', '-y', 'install', 'changeo=0.4.5-1'] 0m42.8s INFO: Running scripts post_install 0m42.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_install_exceptions'] 0m42.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_install_exceptions'] 0m42.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 0m44.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 0m47.8s ERROR: WARN: Broken symlinks: /usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd (python3-biopython) /usr/lib/python2.7/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd (python-biopython) 0m47.8s INFO: /bin converted to /usr/bin by /usr merge 0m47.8s INFO: /lib converted to /usr/lib by /usr merge 0m47.8s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m47.8s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m47.8s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m47.8s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m47.8s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m47.8s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m47.8s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m47.8s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m47.8s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m47.8s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m47.8s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m47.8s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m47.8s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m47.8s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m47.8s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m47.8s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m47.8s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m47.8s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m47.8s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m47.8s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m47.8s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m47.8s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m47.8s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m47.8s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m47.8s INFO: /sbin converted to /usr/sbin by /usr merge 0m49.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', '-ac', '--ignore-obsolete'] 0m51.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', '-ac', '--ignore-obsolete'] 0m51.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m51.8s DUMP: 0.15.6 0m51.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m51.8s INFO: Running adequate version 0.15.6 now. 0m51.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'changeo'] 0m51.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'changeo'] 0m51.9s INFO: Running scripts pre_remove 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m51.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m51.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_exceptions'] 0m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/pre_remove_exceptions'] 0m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m56.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed blt blt 2.5.3+dfsg-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed changeo changeo 0.4.5-1 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-lyx fonts-lyx 2.3.2-1 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.4 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libblosc1 libblosc1 1.15.1+ds1-1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed liblzo2-2:amd64 liblzo2-2 2.10-0.1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.7-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed python python 2.7.16-1 install ok installed python-biopython python-biopython 1.73+dfsg-1 install ok installed python-biopython-doc python-biopython-doc 1.73+dfsg-1 install ok installed python-matplotlib-data python-matplotlib-data 3.0.2-2 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python-numpy python-numpy 1:1.16.2-1 install ok installed python-olefile python-olefile 0.46-1 install ok installed python-pil:amd64 python-pil 5.4.1-2+deb10u3 install ok installed python-pkg-resources python-pkg-resources 40.8.0-1 install ok installed python-renderpm:amd64 python-renderpm 3.5.13-1+deb10u1 install ok installed python-reportlab python-reportlab 3.5.13-1+deb10u1 install ok installed python-reportlab-accel:amd64 python-reportlab-accel 3.5.13-1+deb10u1 install ok installed python-tables-data python-tables-data 3.4.4-2 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-airr python3-airr 1.2.1-2 install ok installed python3-biopython python3-biopython 1.73+dfsg-1 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-cycler python3-cycler 0.10.0-1 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-kiwisolver python3-kiwisolver 1.0.1-2+b1 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-matplotlib python3-matplotlib 3.0.2-2 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-numexpr python3-numexpr 2.6.9-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pandas python3-pandas 0.23.3+dfsg-3 install ok installed python3-pandas-lib python3-pandas-lib 0.23.3+dfsg-3 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-presto python3-presto 0.5.10-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-renderpm:amd64 python3-renderpm 3.5.13-1+deb10u1 install ok installed python3-reportlab python3-reportlab 3.5.13-1+deb10u1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.13-1+deb10u1 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-tables python3-tables 3.4.4-2 install ok installed python3-tables-lib python3-tables-lib 3.4.4-2 install ok installed python3-tk:amd64 python3-tk 3.7.3-1 install ok installed python3-tz python3-tz 2019.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3-yamlordereddictloader python3-yamlordereddictloader 0.4.0-1 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-4 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-8', 'file', 'fontconfig-config', 'fonts-lyx', 'g++-', 'g++-8', 'gcc', 'gcc-8', 'gsfonts', 'javascript-common', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libperl5.28:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.28', 'python', 'python-biopython', 'python-biopython-doc', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-olefile', 'python-pil:amd64', 'python-pkg-resources', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-tables-data', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-airr', 'python3-biopython', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-html5lib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-presto', 'python3-pyparsing', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.7', 'python3.7-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils', 'changeo'] 1m2.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt bzip2 changeo cpp cpp-8 file fontconfig-config fonts-lyx g++ g++-8 gcc gcc-8 gsfonts javascript-common libaec0 libasan5 libatomic1 libbinutils libblas3 libblosc1 libbsd0 libc-dev-bin libc6-dev libcc1-0 libexpat1 libfontconfig1 libfreetype6 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libhdf5-103 libicu63 libimagequant0 libisl19 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 liblmdb0 liblsan0 liblzo2-2 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpc3 libmpdec2 libmpfr6 libmpx2 libperl5.28 libpng16-16 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsnappy1v5 libsqlite3-0 libssl1.1 libstdc++-8-dev libsz2 libtcl8.6 libtiff5 libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 linux-libc-dev lsb-base manpages manpages-dev mime-support ncbi-blast+ ncbi-data netbase perl perl-modules-5.28 python python-biopython python-biopython-doc python-matplotlib-data python-minimal python-numpy python-olefile python-pil python-pkg-resources python-renderpm python-reportlab python-reportlab-accel python-tables-data python2 python2-minimal python2.7 python2.7-minimal python3 python3-airr python3-biopython python3-bs4 python3-chardet python3-cycler python3-dateutil python3-decorator python3-html5lib python3-kiwisolver python3-lxml python3-matplotlib python3-minimal python3-numexpr python3-numpy python3-olefile python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-presto python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-soupsieve python3-tables python3-tables-lib python3-tk python3-tz python3-webencodings python3-yaml python3-yamlordereddictloader python3.7 python3.7-minimal readline-common sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xz-utils 0 upgraded, 0 newly installed, 165 to remove and 0 not upgraded. After this operation, 614 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24860 files and directories currently installed.) Removing g++ (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing python3-tk:amd64 (3.7.3-1) ... Removing blt (2.5.3+dfsg-4) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing changeo (0.4.5-1) ... Removing cpp (4:8.3.0-1) ... Removing file (1:5.35-4+deb10u2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-4) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing python3-matplotlib (3.0.2-2) ... Removing python-matplotlib-data (3.0.2-2) ... Removing fonts-lyx (2.3.2-1) ... Removing g++-8 (8.3.0-6) ... Removing python3-renderpm:amd64 (3.5.13-1+deb10u1) ... Removing python-renderpm:amd64 (3.5.13-1+deb10u1) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Removing javascript-common (11) ... Removing python3-tables (3.4.4-2) ... Removing python3-tables-lib (3.4.4-2) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing python3-presto (0.5.10-1) ... Removing python3-scipy (1.1.0-7) ... Removing python3-biopython (1.73+dfsg-1) ... Removing python3-airr (1.2.1-2) ... Removing python3-pandas (0.23.3+dfsg-3) ... Removing python3-pandas-lib (0.23.3+dfsg-3) ... Removing python3-numexpr (2.6.9-1) ... Removing python3-numpy (1:1.16.2-1) ... Removing python-biopython (1.73+dfsg-1) ... Removing python-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libblosc1 (1.15.1+ds1-1) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing python3-yamlordereddictloader (0.4.0-1) ... Removing python3-yaml (3.13-2) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing python3-reportlab (3.5.13-1+deb10u1) ... Removing python3-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Removing python3-dateutil (2.7.3-3) ... Removing python-reportlab (3.5.13-1+deb10u1) ... Removing python-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Removing python-pkg-resources (40.8.0-1) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing python-pil:amd64 (5.4.1-2+deb10u3) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing liblzo2-2:amd64 (2.10-0.1) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libsnappy1v5:amd64 (1.1.7-1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing netbase (5.6) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Removing python-biopython-doc (1.73+dfsg-1) ... Removing python-olefile (0.46-1) ... Removing python-tables-data (3.4.4-2) ... Removing python3-chardet (3.0.4-3) ... Removing python3-cycler (0.10.0-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-kiwisolver (1.0.1-2+b1) ... Removing python3-olefile (0.46-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-tz (2019.1-1) ... Removing python3-webencodings (0.5.1-1) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Removing ttf-bitstream-vera (1.10-8) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp-8 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing python3-six (1.12.0-1) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing python (2.7.16-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libquadmath0:amd64 (8.3.0-6) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-8', 'file', 'fontconfig-config', 'fonts-lyx', 'g++-', 'g++-8', 'gcc', 'gcc-8', 'gsfonts', 'javascript-common', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libperl5.28:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.28', 'python', 'python-biopython', 'python-biopython-doc', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-olefile', 'python-pil:amd64', 'python-pkg-resources', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-tables-data', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-airr', 'python3-biopython', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-html5lib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-presto', 'python3-pyparsing', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.7', 'python3.7-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils', 'changeo'] 1m2.2s INFO: Running scripts post_remove 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_remove_exceptions'] 1m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_remove_exceptions'] 1m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-8', 'file', 'fontconfig-config', 'fonts-lyx', 'g++', 'g++-8', 'gcc', 'gcc-8', 'gsfonts', 'javascript-common', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libperl5.28:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.28', 'python', 'python-biopython', 'python-biopython-doc', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-olefile', 'python-pil:amd64', 'python-pkg-resources', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-tables-data', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-airr', 'python3-biopython', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-html5lib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-presto', 'python3-pyparsing', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.7', 'python3.7-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils'] 1m2.8s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove file which isn't installed (Reading database ... 6515 files and directories currently installed.) Purging configuration files for fontconfig-config (2.13.1-2) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblosc1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl19 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-5) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzo2-2 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.35-4+deb10u2) ... dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmpx2 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libstdc++-8-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Purging configuration files for netbase (5.6) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-biopython which isn't installed dpkg: warning: ignoring request to remove python-biopython-doc which isn't installed Purging configuration files for python-matplotlib-data (3.0.2-2) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-olefile which isn't installed dpkg: warning: ignoring request to remove python-pil which isn't installed dpkg: warning: ignoring request to remove python-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python-renderpm which isn't installed dpkg: warning: ignoring request to remove python-reportlab which isn't installed dpkg: warning: ignoring request to remove python-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python-tables-data which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-airr which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numexpr which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-presto which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-renderpm which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-tables which isn't installed dpkg: warning: ignoring request to remove python3-tables-lib which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-yamlordereddictloader which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'bzip2', 'cpp', 'cpp-8', 'file', 'fontconfig-config', 'fonts-lyx', 'g++', 'g++-8', 'gcc', 'gcc-8', 'gsfonts', 'javascript-common', 'libaec0:amd64', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libimagequant0:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'liblmdb0:amd64', 'liblsan0:amd64', 'liblzo2-2:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libperl5.28:amd64', 'libpng16-16:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libstdc++-8-dev:amd64', 'libsz2:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev:amd64', 'lsb-base', 'manpages', 'manpages-dev', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'perl', 'perl-modules-5.28', 'python', 'python-biopython', 'python-biopython-doc', 'python-matplotlib-data', 'python-minimal', 'python-numpy', 'python-olefile', 'python-pil:amd64', 'python-pkg-resources', 'python-renderpm:amd64', 'python-reportlab', 'python-reportlab-accel:amd64', 'python-tables-data', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-airr', 'python3-biopython', 'python3-bs4', 'python3-chardet', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-html5lib', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-matplotlib', 'python3-minimal', 'python3-numexpr', 'python3-numpy', 'python3-olefile', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-presto', 'python3-pyparsing', 'python3-renderpm:amd64', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-soupsieve', 'python3-tables', 'python3-tables-lib', 'python3-tk:amd64', 'python3-tz', 'python3-webencodings', 'python3-yaml', 'python3-yamlordereddictloader', 'python3.7', 'python3.7-minimal', 'readline-common', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'x11-common', 'xz-utils'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--purge', 'changeo'] 1m2.8s DUMP: dpkg: warning: ignoring request to remove changeo which isn't installed 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--purge', 'changeo'] 1m2.8s INFO: Running scripts post_purge 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_purge_exceptions'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_purge_exceptions'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--purge', '--pending'] 1m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--purge', '--pending'] 1m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--remove', '--pending'] 1m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg', '--remove', '--pending'] 1m2.9s INFO: Running scripts post_test 1m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_test_exceptions'] 1m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'tmp/scripts/post_test_exceptions'] 1m2.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 1m3.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 1m3.9s DEBUG: No broken symlinks as far as we can find. 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-divert', '--list'] 1m3.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'dpkg-divert', '--list'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'clean'] 1m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b', 'apt-get', 'clean'] 1m4.0s DEBUG: Recording chroot state 1m4.5s INFO: PASS: Installation and purging test. 1m4.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/shm'] 1m4.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/shm'] 1m4.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/console'] 1m4.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/console'] 1m4.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/ptmx'] 1m4.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/ptmx'] 1m4.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/pts'] 1m4.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/dev/pts'] 1m4.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/proc'] 1m5.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b/proc'] 1m5.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 1m5.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb96wrh9b'] 1m5.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpb96wrh9b 1m5.1s INFO: PASS: All tests. 1m5.1s INFO: piuparts run ends. ret=0 End: 2024-09-28 05:00:23 GMT