Start: 2024-01-30 15:43:39 GMT Package: gromacs-mpich Source: gromacs Version: 2019.1-1 Installed-Size: 23268 Maintainer: Debichem Team Architecture: amd64 Depends: mpich, libc6 (>= 2.27), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libhwloc5 (>= 1.11.12), libmpich12, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Recommends: gromacs Suggests: gromacs-data Description: Molecular dynamics sim, binaries for MPICH parallelization Homepage: http://www.gromacs.org/ Description-md5: befd212127fab1c214923ce24592496e Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package Section: science Priority: optional Filename: pool/main/g/gromacs/gromacs-mpich_2019.1-1_amd64.deb Size: 8243748 MD5sum: d09897f2c0ace10ceeeeb4ba304eba93 SHA256: dbb3340803754d562c0c69764e39bc806068ec07bd3b859b10ca6ee26633e2af Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt gromacs-mpich=2019.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt gromacs-mpich=2019.1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmxwftdfu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmxwftdfu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/shm'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/shm'] 0m1.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m1.3s DEBUG: Created policy-rc.d and chmodded it. 0m1.3s DEBUG: Created resolv.conf. 0m1.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmxwftdfu/tmp/scripts/ 0m1.3s INFO: Running scripts post_chroot_unpack 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'update'] 0m2.4s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'update'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', '-yf', 'dist-upgrade'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.0s INFO: Running scripts post_setup 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_dummy_users'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_forbid_home'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_minimize'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_setup_zz_backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'clean'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'clean'] 0m4.1s DEBUG: Recording chroot state 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-divert', '--list'] 0m4.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-divert', '--list'] 0m4.5s INFO: Running scripts is_testable 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/is_testable_uninstallable'] 0m4.5s INFO: apt-cache does not know about any of the requested packages 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m5.4s DEBUG: No broken symlinks as far as we can find. 0m5.4s INFO: Running scripts pre_install 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_database-server'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_database-server'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_extras'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_extras'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m5.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m6.2s DEBUG: No broken symlinks as far as we can find. 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-cache', 'policy'] 0m6.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-cache', 'policy'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-cache', 'policy', 'gromacs-mpich'] 0m6.9s DUMP: gromacs-mpich: Installed: (none) Candidate: 2019.1-1 Version table: 2019.1-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-cache', 'policy', 'gromacs-mpich'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', '-y', 'install', 'gromacs-mpich=2019.1-1'] 0m22.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 fonts-mathjax g++ g++-8 gcc gcc-8 gfortran gfortran-8 gromacs gromacs-data hwloc-nox libasan5 libatomic1 libbinutils libblas3 libbsd0 libc-dev-bin libc6-dev libcc1-0 libfftw3-double3 libfftw3-single3 libgcc-8-dev libgfortran-8-dev libgfortran5 libgomp1 libgromacs4 libhwloc-plugins libhwloc5 libicu63 libisl19 libitm1 libjs-mathjax liblapack3 liblsan0 libltdl7 libmpc3 libmpfr6 libmpich-dev libmpich12 libmpx2 libnuma1 libpciaccess0 libquadmath0 libstdc++-8-dev libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 linux-libc-dev manpages manpages-dev mpich ocl-icd-libopencl1 Suggested packages: binutils-doc cpp-doc gcc-8-locales g++-multilib g++-8-multilib gcc-8-doc libstdc++6-8-dbg gcc-multilib make autoconf automake libtool flex bison gdb gcc-doc gcc-8-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev pymol glibc-doc libfftw3-bin libfftw3-dev libhwloc-contrib-plugins fonts-mathjax-extras fonts-stix libjs-mathjax-doc pciutils libstdc++-8-doc man-browser mpich-doc opencl-icd The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 fonts-mathjax g++ g++-8 gcc gcc-8 gfortran gfortran-8 gromacs gromacs-data gromacs-mpich hwloc-nox libasan5 libatomic1 libbinutils libblas3 libbsd0 libc-dev-bin libc6-dev libcc1-0 libfftw3-double3 libfftw3-single3 libgcc-8-dev libgfortran-8-dev libgfortran5 libgomp1 libgromacs4 libhwloc-plugins libhwloc5 libicu63 libisl19 libitm1 libjs-mathjax liblapack3 liblsan0 libltdl7 libmpc3 libmpfr6 libmpich-dev libmpich12 libmpx2 libnuma1 libpciaccess0 libquadmath0 libstdc++-8-dev libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 linux-libc-dev manpages manpages-dev mpich ocl-icd-libopencl1 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 137 MB of archives. After this operation, 565 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:2 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:4 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:5 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:9 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:10 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:11 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:16 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:17 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:23 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:24 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:25 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:26 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:29 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:30 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:31 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:33 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:34 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:35 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:36 http://deb.debian.org/debian buster/main amd64 gromacs-data all 2019.1-1 [32.7 MB] Get:37 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:43 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libgromacs4 amd64 2019.1-1 [12.3 MB] Get:45 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:51 http://deb.debian.org/debian buster/main amd64 gromacs amd64 2019.1-1 [127 kB] Get:52 http://deb.debian.org/debian buster/main amd64 hwloc-nox amd64 1.11.12-3 [159 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libmpich12 amd64 3.3-3 [1169 kB] Get:54 http://deb.debian.org/debian buster/main amd64 mpich amd64 3.3-3 [411 kB] Get:55 http://deb.debian.org/debian buster/main amd64 gromacs-mpich amd64 2019.1-1 [8244 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:59 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libmpich-dev amd64 3.3-3 [1429 kB] Get:62 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 137 MB in 1s (122 MB/s) Selecting previously unselected package manpages. 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Setting up libitm1:amd64 (8.3.0-6) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up manpages-dev (4.16-2) ... Setting up gromacs-data (2019.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up hwloc-nox (1.11.12-3) ... Setting up binutils (2.31.1-16) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up cpp (4:8.3.0-1) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gcc-8 (8.3.0-6) ... Setting up mpich (3.3-3) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up gfortran-8 (8.3.0-6) ... Setting up gcc (4:8.3.0-1) ... Setting up g++-8 (8.3.0-6) ... Setting up gromacs-mpich (2019.1-1) ... update-alternatives: using /usr/bin/mdrun_mpi.mpich to provide /usr/bin/mdrun_mpi (mdrun_mpi) in auto mode Setting up libgromacs4:amd64 (2019.1-1) ... Setting up gromacs (2019.1-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up g++ (4:8.3.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libmpich-dev:amd64 (3.3-3) ... update-alternatives: using /usr/include/x86_64-linux-gnu/mpich to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', '-y', 'install', 'gromacs-mpich=2019.1-1'] 0m22.7s INFO: Running scripts post_install 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_install_exceptions'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_install_exceptions'] 0m22.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m24.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m28.5s DEBUG: No broken symlinks as far as we can find. 0m28.6s INFO: /bin converted to /usr/bin by /usr merge 0m28.6s INFO: /lib converted to /usr/lib by /usr merge 0m28.6s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m28.6s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m28.6s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m28.6s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m28.6s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m28.6s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m28.6s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m28.6s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m28.6s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m28.6s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m28.6s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m28.6s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m28.6s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m28.6s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m28.6s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m28.6s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m28.6s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m28.6s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m28.6s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m28.6s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m28.6s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m28.6s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m28.6s INFO: /sbin converted to /usr/sbin by /usr merge 0m31.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', '-ac', '--ignore-obsolete'] 0m34.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', '-ac', '--ignore-obsolete'] 0m34.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.3s DUMP: 0.15.6 0m34.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.3s INFO: Running adequate version 0.15.6 now. 0m34.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'gromacs-mpich'] 0m34.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'gromacs-mpich'] 0m34.4s INFO: Running scripts pre_remove 0m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_exceptions'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/pre_remove_exceptions'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gromacs gromacs 2019.1-1 install ok installed gromacs-data gromacs-data 2019.1-1 install ok installed gromacs-mpich gromacs-mpich 2019.1-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed hwloc-nox hwloc-nox 1.11.12-3 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.8-2 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran-8-dev:amd64 libgfortran-8-dev 8.3.0-6 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgromacs4:amd64 libgromacs4 2019.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpich-dev:amd64 libmpich-dev 3.3-3 install ok installed libmpich12:amd64 libmpich12 3.3-3 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed mpich mpich 3.3-3 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'fonts-mathjax', 'g++-', 'g++-8', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'hwloc-nox', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpich-dev:amd64', 'libmpich12:amd64', 'libmpx2:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libstdc++-8-dev:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'mpich', 'ocl-icd-libopencl1:amd64', 'gromacs-mpich'] 0m41.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 fonts-mathjax g++ g++-8 gcc gcc-8 gfortran gfortran-8 gromacs gromacs-data gromacs-mpich hwloc-nox libasan5 libatomic1 libbinutils libblas3 libbsd0 libc-dev-bin libc6-dev libcc1-0 libfftw3-double3 libfftw3-single3 libgcc-8-dev libgfortran-8-dev libgfortran5 libgomp1 libgromacs4 libhwloc-plugins libhwloc5 libicu63 libisl19 libitm1 libjs-mathjax liblapack3 liblsan0 libltdl7 libmpc3 libmpfr6 libmpich-dev libmpich12 libmpx2 libnuma1 libpciaccess0 libquadmath0 libstdc++-8-dev libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 linux-libc-dev manpages manpages-dev mpich ocl-icd-libopencl1 0 upgraded, 0 newly installed, 62 to remove and 0 not upgraded. After this operation, 565 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 41291 files and directories currently installed.) Removing libmpich-dev:amd64 (3.3-3) ... Removing g++ (4:8.3.0-1) ... Removing gfortran (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing cpp (4:8.3.0-1) ... Removing gromacs (2019.1-1) ... Removing gromacs-data (2019.1-1) ... Removing libjs-mathjax (2.7.4+dfsg-1) ... Removing fonts-mathjax (2.7.4+dfsg-1) ... Removing g++-8 (8.3.0-6) ... Removing gfortran-8 (8.3.0-6) ... Removing gromacs-mpich (2019.1-1) ... Removing mpich (3.3-3) ... Removing hwloc-nox (1.11.12-3) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing libgfortran-8-dev:amd64 (8.3.0-6) ... Removing libgromacs4:amd64 (2019.1-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing libmpich12:amd64 (3.3-3) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp-8 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'fonts-mathjax', 'g++-', 'g++-8', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'hwloc-nox', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpich-dev:amd64', 'libmpich12:amd64', 'libmpx2:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libstdc++-8-dev:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'mpich', 'ocl-icd-libopencl1:amd64', 'gromacs-mpich'] 0m41.7s INFO: Running scripts post_remove 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_remove_exceptions'] 0m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_remove_exceptions'] 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'fonts-mathjax', 'g++', 'g++-8', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'hwloc-nox', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpich-dev:amd64', 'libmpich12:amd64', 'libmpx2:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libstdc++-8-dev:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'mpich', 'ocl-icd-libopencl1:amd64'] 0m41.8s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-8 which isn't installed dpkg: warning: ignoring request to remove gromacs which isn't installed dpkg: warning: ignoring request to remove gromacs-data which isn't installed dpkg: warning: ignoring request to remove hwloc-nox which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs4 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libisl19 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed (Reading database ... 6463 files and directories currently installed.) Purging configuration files for libmpich-dev:amd64 (3.3-3) ... dpkg: warning: ignoring request to remove libmpich12 which isn't installed dpkg: warning: ignoring request to remove libmpx2 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-8-dev which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed dpkg: warning: ignoring request to remove mpich which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'fonts-mathjax', 'g++', 'g++-8', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'hwloc-nox', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpich-dev:amd64', 'libmpich12:amd64', 'libmpx2:amd64', 'libnuma1:amd64', 'libpciaccess0:amd64', 'libquadmath0:amd64', 'libstdc++-8-dev:amd64', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'manpages', 'manpages-dev', 'mpich', 'ocl-icd-libopencl1:amd64'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--purge', 'gromacs-mpich'] 0m41.8s DUMP: dpkg: warning: ignoring request to remove gromacs-mpich which isn't installed 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--purge', 'gromacs-mpich'] 0m41.8s INFO: Running scripts post_purge 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_purge_exceptions'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_purge_exceptions'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--purge', '--pending'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--purge', '--pending'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--remove', '--pending'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg', '--remove', '--pending'] 0m41.8s INFO: Running scripts post_test 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_test_exceptions'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'tmp/scripts/post_test_exceptions'] 0m41.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m42.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m42.5s DEBUG: No broken symlinks as far as we can find. 0m42.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-divert', '--list'] 0m42.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'dpkg-divert', '--list'] 0m42.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'clean'] 0m42.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu', 'apt-get', 'clean'] 0m42.6s DEBUG: Recording chroot state 0m43.1s INFO: PASS: Installation and purging test. 0m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/shm'] 0m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/shm'] 0m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/console'] 0m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/console'] 0m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/ptmx'] 0m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/ptmx'] 0m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/pts'] 0m43.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/dev/pts'] 0m43.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/proc'] 0m43.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu/proc'] 0m43.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m43.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmxwftdfu'] 0m43.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmxwftdfu 0m43.7s INFO: PASS: All tests. 0m43.7s INFO: piuparts run ends. ret=0 End: 2024-01-30 15:44:23 GMT