Start: 2024-01-30 16:00:10 GMT Package: gromacs-openmpi Source: gromacs Version: 2019.1-1 Installed-Size: 23271 Maintainer: Debichem Team Architecture: amd64 Replaces: gromacs-lam Depends: openmpi-bin (>= 1.2.3), libc6 (>= 2.27), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libhwloc5 (>= 1.11.12), libopenmpi3, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Recommends: gromacs Suggests: gromacs-data Description: Molecular dynamics sim, binaries for OpenMPI parallelization Homepage: http://www.gromacs.org/ Description-md5: c30854a1f128b7a83468fdd24f8edbc3 Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package Section: science Priority: optional Filename: pool/main/g/gromacs/gromacs-openmpi_2019.1-1_amd64.deb Size: 8245924 MD5sum: 9a3de57572e146b577959ace3713aef2 SHA256: bcbae418090663a95501dbd215865f2448cc3c00946f12bd28ce6b8b7acab873 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt gromacs-openmpi=2019.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt gromacs-openmpi=2019.1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpcqh_fmel 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpcqh_fmel 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/shm'] 0m1.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpcqh_fmel/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'update'] 0m2.1s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_dummy_users'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_forbid_home'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_minimize'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_setup_zz_backports'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'clean'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'clean'] 0m3.8s DEBUG: Recording chroot state 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-divert', '--list'] 0m4.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-divert', '--list'] 0m4.3s INFO: Running scripts is_testable 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/is_testable_uninstallable'] 0m4.3s INFO: apt-cache does not know about any of the requested packages 0m4.3s INFO: Running scripts pre_test 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_test_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_test_root_password'] 0m4.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_test_root_password'] 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m5.2s DEBUG: No broken symlinks as far as we can find. 0m5.2s INFO: Running scripts pre_install 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_database-server'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_extras'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m6.1s DEBUG: No broken symlinks as far as we can find. 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-cache', 'policy'] 0m6.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-cache', 'policy'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m6.8s DUMP: gromacs-openmpi: Installed: (none) Candidate: 2019.1-1 Version table: 2019.1-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', '-y', 'install', 'gromacs-openmpi=2019.1-1'] 0m25.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 file fonts-mathjax gcc gcc-8 gfortran gfortran-8 gromacs gromacs-data ibverbs-providers krb5-locales libasan5 libatomic1 libbinutils libblas3 libbsd0 libc-dev-bin libc6-dev libcaf-openmpi-3 libcc1-0 libcoarrays-dev libcoarrays-openmpi-dev libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfftw3-double3 libfftw3-single3 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran-8-dev libgfortran5 libgomp1 libgromacs4 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63 libisl19 libitm1 libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblsan0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpc3 libmpfr6 libmpx2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libsigsegv2 libssl1.1 libtool libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxmuu1 linux-libc-dev m4 manpages manpages-dev netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.28 xauth Suggested packages: autoconf-archive gnu-standards autoconf-doc gettext binutils-doc cpp-doc gcc-8-locales gcc-multilib make flex bison gdb gcc-doc gcc-8-multilib gcc-8-doc libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg pymol glibc-doc libfftw3-bin libfftw3-dev gdbm-l10n krb5-doc krb5-user libhwloc-contrib-plugins fonts-mathjax-extras fonts-stix libjs-mathjax-doc libtool-doc openmpi-doc pciutils sensible-utils gcj-jdk m4-doc man-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl liblocale-codes-perl The following NEW packages will be installed: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 file fonts-mathjax gcc gcc-8 gfortran gfortran-8 gromacs gromacs-data gromacs-openmpi ibverbs-providers krb5-locales libasan5 libatomic1 libbinutils libblas3 libbsd0 libc-dev-bin libc6-dev libcaf-openmpi-3 libcc1-0 libcoarrays-dev libcoarrays-openmpi-dev libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfftw3-double3 libfftw3-single3 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran-8-dev libgfortran5 libgomp1 libgromacs4 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63 libisl19 libitm1 libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblsan0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpc3 libmpfr6 libmpx2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libsigsegv2 libssl1.1 libtool libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxmuu1 linux-libc-dev m4 manpages manpages-dev netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.28 xauth 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 142 MB of archives. After this operation, 601 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:9 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:10 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:11 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:20 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:22 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:23 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get:24 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:25 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get:26 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:28 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:29 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:33 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:34 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:35 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:40 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:41 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:47 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:48 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:49 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:52 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:54 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:55 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:56 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:57 http://deb.debian.org/debian buster/main amd64 gromacs-data all 2019.1-1 [32.7 MB] Get:58 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:64 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libgromacs4 amd64 2019.1-1 [12.3 MB] Get:66 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:71 http://deb.debian.org/debian buster/main amd64 gromacs amd64 2019.1-1 [127 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:80 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:85 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:89 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:90 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get:91 http://deb.debian.org/debian buster/main amd64 gromacs-openmpi amd64 2019.1-1 [8246 kB] Get:92 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libcaf-openmpi-3 amd64 2.4.0-2 [35.6 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libcoarrays-dev amd64 2.4.0-2 [29.1 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libcoarrays-openmpi-dev amd64 2.4.0-2 [35.2 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:106 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:107 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 142 MB in 1s (104 MB/s) Selecting previously unselected package perl-modules-5.28. 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Setting up libitm1:amd64 (8.3.0-6) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... Setting up libtsan0:amd64 (8.3.0-6) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up manpages-dev (4.16-2) ... Setting up gromacs-data (2019.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up m4 (1.4.18-2) ... Setting up binutils (2.31.1-16) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up cpp (4:8.3.0-1) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gcc-8 (8.3.0-6) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up libtool (2.4.6-9) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up gcc (4:8.3.0-1) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up autoconf (2.69-11) ... Setting up xauth (1:1.0.10-1) ... Setting up libgromacs4:amd64 (2019.1-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up librdmacm1:amd64 (22.1-1) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up gromacs (2019.1-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up libfabric1 (1.6.2-3) ... Setting up libcoarrays-dev:amd64 (2.4.0-2) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libcaf-openmpi-3:amd64 (2.4.0-2) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up gromacs-openmpi (2019.1-1) ... update-alternatives: using /usr/bin/mdrun_mpi.openmpi to provide /usr/bin/mdrun_mpi (mdrun_mpi) in auto mode Setting up libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', '-y', 'install', 'gromacs-openmpi=2019.1-1'] 0m25.4s INFO: Running scripts post_install 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_install_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_install_exceptions'] 0m25.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m27.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m32.1s DEBUG: No broken symlinks as far as we can find. 0m32.2s INFO: /bin converted to /usr/bin by /usr merge 0m32.2s INFO: /lib converted to /usr/lib by /usr merge 0m32.2s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m32.2s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m32.2s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m32.2s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m32.2s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m32.2s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m32.2s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m32.2s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m32.2s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m32.2s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m32.2s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m32.2s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m32.2s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m32.2s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m32.2s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m32.2s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m32.2s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m32.2s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m32.2s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m32.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m32.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m32.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m32.2s INFO: /sbin converted to /usr/sbin by /usr merge 0m35.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', '-ac', '--ignore-obsolete'] 0m38.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', '-ac', '--ignore-obsolete'] 0m38.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m38.3s DUMP: 0.15.6 0m38.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m38.3s INFO: Running adequate version 0.15.6 now. 0m38.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'gromacs-openmpi'] 0m38.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'gromacs-openmpi'] 0m38.4s INFO: Running scripts pre_remove 0m38.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m38.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m38.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_exceptions'] 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/pre_remove_exceptions'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m47.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed autoconf autoconf 2.69-11 install ok installed automake automake 1:1.16.1-4 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gromacs gromacs 2019.1-1 install ok installed gromacs-data gromacs-data 2019.1-1 install ok installed gromacs-openmpi gromacs-openmpi 2019.1-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed ibverbs-providers:amd64 ibverbs-providers 22.1-1 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed krb5-locales krb5-locales 1.17-3+deb10u4 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libbinutils:amd64 libbinutils 2.31.1-16 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u1 install ok installed libcaf-openmpi-3:amd64 libcaf-openmpi-3 2.4.0-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcc1-0:amd64 libcc1-0 8.3.0-6 install ok installed libcoarrays-dev:amd64 libcoarrays-dev 2.4.0-2 install ok installed libcoarrays-openmpi-dev:amd64 libcoarrays-openmpi-dev 2.4.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 2.1.8-stable-4 install ok installed libevent-core-2.1-6:amd64 libevent-core-2.1-6 2.1.8-stable-4 install ok installed libevent-pthreads-2.1-6:amd64 libevent-pthreads-2.1-6 2.1.8-stable-4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfabric1 libfabric1 1.6.2-3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.8-2 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran-8-dev:amd64 libgfortran-8-dev 8.3.0-6 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgromacs4:amd64 libgromacs4 2019.1-1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhwloc-dev:amd64 libhwloc-dev 1.11.12-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 22.1-1 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-9 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-3-dev:amd64 libnl-3-dev 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnl-route-3-dev:amd64 libnl-route-3-dev 3.4.0-1 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 3.1.3-11 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtool libtool 2.4.6-9 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed m4 m4 1.4.18-2 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed openmpi-bin openmpi-bin 3.1.3-11 install ok installed openmpi-common openmpi-common 3.1.3-11 install ok installed openssh-client openssh-client 1:7.9p1-10+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed xauth xauth 1:1.0.10-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m47.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m47.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'remove', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'file', 'fonts-mathjax', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'ibverbs-providers:amd64', 'krb5-locales', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcc1-0:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libedit2:amd64', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libgssapi-krb5-2:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libsigsegv2:amd64', 'libssl1.1:amd64', 'libtool', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'linux-libc-dev:amd64', 'm4', 'manpages', 'manpages-dev', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.28', 'xauth', 'gromacs-openmpi'] 0m49.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: autoconf automake autotools-dev binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 file fonts-mathjax gcc gcc-8 gfortran gfortran-8 gromacs gromacs-data gromacs-openmpi ibverbs-providers krb5-locales libasan5 libatomic1 libbinutils libblas3 libbsd0 libc-dev-bin libc6-dev libcaf-openmpi-3 libcc1-0 libcoarrays-dev libcoarrays-openmpi-dev libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfftw3-double3 libfftw3-single3 libgcc-8-dev libgdbm-compat4 libgdbm6 libgfortran-8-dev libgfortran5 libgomp1 libgromacs4 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63 libisl19 libitm1 libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblsan0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpc3 libmpfr6 libmpx2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libsigsegv2 libssl1.1 libtool libtsan0 libubsan1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxmuu1 linux-libc-dev m4 manpages manpages-dev netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-modules-5.28 xauth 0 upgraded, 0 newly installed, 107 to remove and 0 not upgraded. After this operation, 601 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44595 files and directories currently installed.) Removing libopenmpi-dev:amd64 (3.1.3-11) ... Removing libhwloc-dev:amd64 (1.11.12-3) ... Removing libltdl-dev:amd64 (2.4.6-9) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing libtool (2.4.6-9) ... Removing autotools-dev (20180224.1) ... Removing libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Removing libcoarrays-dev:amd64 (2.4.0-2) ... Removing gfortran (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing gfortran-8 (8.3.0-6) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing cpp (4:8.3.0-1) ... Removing cpp-8 (8.3.0-6) ... Removing file (1:5.35-4+deb10u2) ... Removing gromacs (2019.1-1) ... Removing gromacs-data (2019.1-1) ... Removing libjs-mathjax (2.7.4+dfsg-1) ... Removing fonts-mathjax (2.7.4+dfsg-1) ... Removing gromacs-openmpi (2019.1-1) ... Removing libibverbs-dev:amd64 (22.1-1) ... Removing ibverbs-providers:amd64 (22.1-1) ... Removing krb5-locales (1.17-3+deb10u4) ... Removing libgfortran-8-dev:amd64 (8.3.0-6) ... Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libgromacs4:amd64 (2019.1-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing xauth (1:1.0.10-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing openmpi-bin (3.1.3-11) ... Removing openssh-client (1:7.9p1-10+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libnuma-dev:amd64 (2.0.12-1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcaf-openmpi-3:amd64 (2.4.0-2) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing libfabric1 (1.6.2-3) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libnl-route-3-dev:amd64 (3.4.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-dev:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libquadmath0:amd64 (8.3.0-6) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing netbase (5.6) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-11) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'remove', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'file', 'fonts-mathjax', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'ibverbs-providers:amd64', 'krb5-locales', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcc1-0:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libedit2:amd64', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libgssapi-krb5-2:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libsigsegv2:amd64', 'libssl1.1:amd64', 'libtool', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'linux-libc-dev:amd64', 'm4', 'manpages', 'manpages-dev', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.28', 'xauth', 'gromacs-openmpi'] 0m49.2s INFO: Running scripts post_remove 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_remove_exceptions'] 0m49.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_remove_exceptions'] 0m49.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--purge', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'file', 'fonts-mathjax', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'ibverbs-providers:amd64', 'krb5-locales', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcc1-0:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libedit2:amd64', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libgssapi-krb5-2:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libsigsegv2:amd64', 'libssl1.1:amd64', 'libtool', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'linux-libc-dev:amd64', 'm4', 'manpages', 'manpages-dev', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.28', 'xauth'] 0m49.5s DUMP: (Reading database ... 6500 files and directories currently installed.) Purging configuration files for autoconf (2.69-11) ... dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove file which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-8 which isn't installed dpkg: warning: ignoring request to remove gromacs which isn't installed dpkg: warning: ignoring request to remove gromacs-data which isn't installed Purging configuration files for ibverbs-providers:amd64 (22.1-1) ... dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libasan5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcaf-openmpi-3 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcoarrays-dev:amd64 (2.4.0-2) ... dpkg: warning: ignoring request to remove libcoarrays-openmpi-dev which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libevent-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgromacs4 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libhwloc-dev which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libibverbs-dev which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libisl19 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libltdl-dev which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmagic-mgc which isn't installed Purging configuration files for libmagic1:amd64 (1:5.35-4+deb10u2) ... dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libmpx2 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.4.0-1) ... dpkg: warning: ignoring request to remove libnl-3-dev which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnl-route-3-dev which isn't installed dpkg: warning: ignoring request to remove libnuma-dev which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed Purging configuration files for libopenmpi-dev:amd64 (3.1.3-11) ... dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libsigsegv2 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libtool which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxmuu1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove m4 which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed Purging configuration files for netbase (5.6) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openmpi-bin (3.1.3-11) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:7.9p1-10+deb10u2) ... dpkg: warning: while removing openssh-client, directory '/usr/lib/systemd' not empty so not removed Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove xauth which isn't installed 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--purge', 'autoconf', 'automake', 'autotools-dev', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'cpp', 'cpp-8', 'file', 'fonts-mathjax', 'gcc', 'gcc-8', 'gfortran', 'gfortran-8', 'gromacs', 'gromacs-data', 'ibverbs-providers:amd64', 'krb5-locales', 'libasan5:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcaf-openmpi-3:amd64', 'libcc1-0:amd64', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libedit2:amd64', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgcc-8-dev:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgromacs4:amd64', 'libgssapi-krb5-2:amd64', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libisl19:amd64', 'libitm1:amd64', 'libjs-mathjax', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'libmagic-mgc', 'libmagic1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libsigsegv2:amd64', 'libssl1.1:amd64', 'libtool', 'libtsan0:amd64', 'libubsan1:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2:amd64', 'libxmuu1:amd64', 'linux-libc-dev:amd64', 'm4', 'manpages', 'manpages-dev', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'perl', 'perl-modules-5.28', 'xauth'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--purge', 'gromacs-openmpi'] 0m49.5s DUMP: dpkg: warning: ignoring request to remove gromacs-openmpi which isn't installed 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--purge', 'gromacs-openmpi'] 0m49.5s INFO: Running scripts post_purge 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_purge_exceptions'] 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_purge_exceptions'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--purge', '--pending'] 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--purge', '--pending'] 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--remove', '--pending'] 0m49.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg', '--remove', '--pending'] 0m49.5s INFO: Running scripts post_test 0m49.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_test_exceptions'] 0m49.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'tmp/scripts/post_test_exceptions'] 0m49.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m50.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m50.5s DEBUG: No broken symlinks as far as we can find. 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-divert', '--list'] 0m50.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'dpkg-divert', '--list'] 0m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'clean'] 0m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel', 'apt-get', 'clean'] 0m50.5s DEBUG: Recording chroot state 0m51.0s INFO: PASS: Installation and purging test. 0m51.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/shm'] 0m51.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/shm'] 0m51.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/console'] 0m51.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/console'] 0m51.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/ptmx'] 0m51.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/ptmx'] 0m51.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/pts'] 0m51.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/dev/pts'] 0m51.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/proc'] 0m51.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel/proc'] 0m51.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m51.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcqh_fmel'] 0m51.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpcqh_fmel 0m51.7s INFO: PASS: All tests. 0m51.7s INFO: piuparts run ends. ret=0 End: 2024-01-30 16:01:02 GMT