Start: 2024-07-31 03:16:35 GMT Package: libbio-asn1-entrezgene-perl Version: 1.720-2 Installed-Size: 103 Maintainer: Debian Perl Group Architecture: all Depends: perl, libbio-perl-perl Description: parser for NCBI Entrez Gene and NCBI Sequence records Homepage: https://metacpan.org/release/Bio-ASN1-EntrezGene Description-md5: 509a55d23010beff27e394f85f8c8673 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::perl, interface::commandline, role::program, works-with-format::plaintext Section: perl Priority: optional Filename: pool/main/libb/libbio-asn1-entrezgene-perl/libbio-asn1-entrezgene-perl_1.720-2_all.deb Size: 38736 MD5sum: 46c33151611ed5358259d7aacd359068 SHA256: 9cc88d7f645663cc6846eac1bab0d3f02c279242bda88255f1dbedf597d7cb04 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt libbio-asn1-entrezgene-perl=1.720-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --install-recommends --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt libbio-asn1-entrezgene-perl=1.720-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-31-amd64 #1 SMP Debian 5.10.221-1 (2024-07-14) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmphe_acyes 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmphe_acyes 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphe_acyes', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmphe_acyes', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphe_acyes/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmphe_acyes/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmphe_acyes/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_dummy_users'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_forbid_home'] 0m3.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_forbid_home'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'clean'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'clean'] 0m3.5s DEBUG: Recording chroot state 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-divert', '--list'] 0m4.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-divert', '--list'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: apt-cache does not know about any of the requested packages 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 0m5.5s DEBUG: No broken symlinks as far as we can find. 0m5.5s INFO: Running scripts pre_install 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 0m6.9s DEBUG: No broken symlinks as far as we can find. 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-cache', 'policy'] 0m7.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-cache', 'policy'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-cache', 'policy', 'libbio-asn1-entrezgene-perl'] 0m7.6s DUMP: libbio-asn1-entrezgene-perl: Installed: (none) Candidate: 1.720-2 Version table: 1.720-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-cache', 'policy', 'libbio-asn1-entrezgene-perl'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', '-y', 'install', 'libbio-asn1-entrezgene-perl=1.720-2'] 1m36.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: amap-align apache2-bin autoconf automake autotools-dev bedtools binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw cpp cpp-8 cwltool dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-noto-mono fsa g++ g++-8 gawk gcc gcc-8 gdal-data gfortran gfortran-8 ghostscript graphviz gsfonts hmmer hyphy-common hyphy-mpi ibverbs-providers infernal javascript-common kalign krb5-locales libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarmadillo9 libarpack2 libarray-compare-perl libasan5 libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbinutils libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblas3 libbrotli1 libbsd-resource-perl libbsd0 libc-ares2 libc-dev-bin libc6-dev libcache-cache-perl libcaf-openmpi-3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcharls2 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcoarrays-dev libcoarrays-openmpi-dev libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libepsilon1 liberror-perl libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreexl1 libfreezethaw-perl libfribidi0 libfyba0 libgcc-8-dev libgd-perl libgd3 libgdal20 libgdbm-compat4 libgdbm6 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran-8-dev libgfortran5 libgif7 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu63 libidn11 libijs-0.35 libimagequant0 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libisl19 libitm1 libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-bootstrap libjs-jquery libjson-c3 libk5crypto3 libkeyutils1 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblmdb0 liblsan0 libltdl-dev libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmime-tools-perl libminizip1 libmldbm-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpdec2 libmpfr6 libmpx2 libncurses6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnspr4 libnss3 libnuma-dev libnuma1 libodbc1 libogdi3.2 libole-storage-lite-perl libopenjp2-7 libopenmpi-dev libopenmpi3 libossp-uuid-perl libossp-uuid16 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.28 libpixman-1-0 libpmix2 libpng16-16 libpoppler82 libpopt0 libpostscript-perl libpq5 libproj13 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libquadmath0 librdmacm1 libreadline7 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.5 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspatialite7 libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.1 libstatistics-descriptive-perl libstdc++-8-dev libstrictures-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsuperlu5 libsvg-graph-perl libsvg-perl libsz2 libtask-weaken-perl libtbb2 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan1 libunicode-map-perl liburi-perl liburiparser1 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxerces-c3.2 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev lsb-base lynx lynx-common m4 mafft manpages manpages-dev maq mariadb-common med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase nodejs nodejs-doc ocl-icd-libopencl1 odbcinst odbcinst1debian2 openmpi-bin openmpi-common openssh-client openssl perl perl-doc perl-modules-5.28 perl-openssl-defaults perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons proda proj-bin proj-data publicsuffix python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal rake raxml readline-common ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom autoconf-archive gnu-standards autoconf-doc gettext binutils-doc groff-base gmap paml blends-doc bowtie-examples bzip2-doc clustalx seaview cpp-doc gcc-8-locales docker.io | singularity-container default-dbus-session-bus | dbus-session-bus emboss-doc emboss-test embassy fonts-noto g++-multilib g++-8-multilib gcc-8-doc libstdc++6-8-dbg gawk-doc gcc-multilib make flex bison gdb gcc-doc gcc-8-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg ghostscript-x graphviz-doc hmmer-doc apache2 | lighttpd | httpd libdigest-hmac-perl libgssapi-perl libxml-sax-expatxs-perl glibc-doc cups-common libnet-daemon-perl libsql-statement-perl libgd-tools gdbm-l10n geotiff-bin gdal-bin libgeotiff-epsg gpm krb5-doc krb5-user libhdf4-doc libhdf4-alt-dev hdf4-tools libhtml-element-extended-perl libhwloc-contrib-plugins liblcms2-utils libtool-doc libcrypt-ssleay-perl libmyodbc odbc-postgresql tdsodbc unixodbc-bin ogdi-bin openmpi-doc uuid libscalar-number-perl pciutils libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql libmime-lite-perl libnet-jabber-perl libstdc++-8-doc libbareword-filehandles-perl libindirect-perl libmultidimensional-perl gcj-jdk libdevel-lexalias-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl m4-doc man-browser menu-l10n gksu | kde-runtime | ktsuss mustang-testdata gnuplot npm opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl liblocale-codes-perl phylip-doc poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ncbi-epcr probcons-extra python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3-genshi python-lockfile-doc python3-lxml-dbg python-lxml-doc python-networkx-doc python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python-pil-doc python3-pil-dbg python3-setuptools python-prov-doc python3-pydot python-psutil-doc python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-scipy-doc python3.7-venv python3.7-doc readline-doc ri ruby-dev bundler boxshade t-coffee-examples pymol rasmol wise-doc The following NEW packages will be installed: amap-align apache2-bin autoconf automake autotools-dev bedtools binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw cpp cpp-8 cwltool dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-noto-mono fsa g++ g++-8 gawk gcc gcc-8 gdal-data gfortran gfortran-8 ghostscript graphviz gsfonts hmmer hyphy-common hyphy-mpi ibverbs-providers infernal javascript-common kalign krb5-locales libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarmadillo9 libarpack2 libarray-compare-perl libasan5 libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbinutils libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblas3 libbrotli1 libbsd-resource-perl libbsd0 libc-ares2 libc-dev-bin libc6-dev libcache-cache-perl libcaf-openmpi-3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcharls2 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcoarrays-dev libcoarrays-openmpi-dev libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libepsilon1 liberror-perl libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreexl1 libfreezethaw-perl libfribidi0 libfyba0 libgcc-8-dev libgd-perl libgd3 libgdal20 libgdbm-compat4 libgdbm6 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran-8-dev libgfortran5 libgif7 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu63 libidn11 libijs-0.35 libimagequant0 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libisl19 libitm1 libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-bootstrap libjs-jquery libjson-c3 libk5crypto3 libkeyutils1 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblmdb0 liblsan0 libltdl-dev libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmime-tools-perl libminizip1 libmldbm-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpdec2 libmpfr6 libmpx2 libncurses6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnspr4 libnss3 libnuma-dev libnuma1 libodbc1 libogdi3.2 libole-storage-lite-perl libopenjp2-7 libopenmpi-dev libopenmpi3 libossp-uuid-perl libossp-uuid16 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.28 libpixman-1-0 libpmix2 libpng16-16 libpoppler82 libpopt0 libpostscript-perl libpq5 libproj13 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libquadmath0 librdmacm1 libreadline7 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.5 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspatialite7 libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.1 libstatistics-descriptive-perl libstdc++-8-dev libstrictures-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsuperlu5 libsvg-graph-perl libsvg-perl libsz2 libtask-weaken-perl libtbb2 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan1 libunicode-map-perl liburi-perl liburiparser1 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxerces-c3.2 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev lsb-base lynx lynx-common m4 mafft manpages manpages-dev maq mariadb-common med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase nodejs nodejs-doc ocl-icd-libopencl1 odbcinst odbcinst1debian2 openmpi-bin openmpi-common openssh-client openssl perl perl-doc perl-modules-5.28 perl-openssl-defaults perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons proda proj-bin proj-data publicsuffix python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal rake raxml readline-common ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip 0 upgraded, 559 newly installed, 0 to remove and 0 not upgraded. Need to get 349 MB of archives. After this operation, 1571 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:7 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:8 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:9 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:11 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:13 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:22 http://deb.debian.org/debian buster/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1807 kB] Get:23 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libmpfr6 amd64 4.0.2-1 [775 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:26 http://deb.debian.org/debian buster/main amd64 gawk amd64 1:4.2.1+dfsg-1 [660 kB] Get:27 http://deb.debian.org/debian buster/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:29 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:30 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:33 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:35 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:36 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:37 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:38 http://deb.debian.org/debian buster/main amd64 bzip2 amd64 1.0.6-9.2~deb10u1 [48.4 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libapparmor1 amd64 2.13.2-10 [94.7 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:41 http://deb.debian.org/debian buster/main amd64 dbus amd64 1.12.20-0+deb10u1 [236 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get:44 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get:45 http://deb.debian.org/debian buster/main amd64 krb5-locales all 1.17-3+deb10u4 [95.6 kB] Get:46 http://deb.debian.org/debian buster/main amd64 manpages all 4.16-2 [1295 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:52 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:54 http://deb.debian.org/debian buster/main amd64 openssh-client amd64 1:7.9p1-10+deb10u2 [782 kB] Get:55 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:56 http://deb.debian.org/debian buster/main amd64 xz-utils amd64 5.2.4-1+deb10u1 [183 kB] Get:57 http://deb.debian.org/debian buster/main amd64 amap-align amd64 2.2+git20080214.600fc29+dfsg-1 [131 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libapr1 amd64 1.6.5-1+b1 [102 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libaprutil1 amd64 1.6.1-4 [91.8 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.1-4 [18.7 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libaprutil1-ldap amd64 1.6.1-4 [16.8 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:69 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libjansson4 amd64 2.12-1 [38.0 kB] Get:73 http://deb.debian.org/debian buster/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b2 [110 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:76 http://deb.debian.org/debian buster/main amd64 apache2-bin amd64 2.4.38-3+deb10u8 [1309 kB] Get:77 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:78 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get:79 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:80 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get:81 http://deb.debian.org/debian buster/main amd64 bedtools amd64 2.27.1+dfsg-4 [593 kB] Get:82 http://deb.debian.org/debian buster/main amd64 binutils-common amd64 2.31.1-16 [2073 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libbinutils amd64 2.31.1-16 [478 kB] Get:84 http://deb.debian.org/debian buster/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-16 [1823 kB] Get:85 http://deb.debian.org/debian buster/main amd64 binutils amd64 2.31.1-16 [56.8 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:90 http://deb.debian.org/debian buster/main amd64 libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libtest-deep-perl all 1.128-1 [48.8 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libtest-differences-perl all 0.65-1 [18.1 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:101 http://deb.debian.org/debian buster/main amd64 bioperl all 1.7.2-3 [418 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libbio-perl-run-perl all 1.7.2-4 [748 kB] Get:103 http://deb.debian.org/debian buster/main amd64 bioperl-run all 1.7.2-4 [45.2 kB] Get:104 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:106 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:110 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:111 http://deb.debian.org/debian buster/main amd64 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] Get:112 http://deb.debian.org/debian buster/main amd64 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] Get:113 http://deb.debian.org/debian buster/main amd64 menu amd64 2.1.47+b1 [380 kB] Get:114 http://deb.debian.org/debian buster/main amd64 blends-common all 0.7.2 [24.7 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:116 http://deb.debian.org/debian buster/main amd64 libtbb2 amd64 2018~U6-4 [147 kB] Get:117 http://deb.debian.org/debian buster/main amd64 bowtie amd64 1.2.2+dfsg-4 [1670 kB] Get:118 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get:119 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:120 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libargtable2-0 amd64 13-1 [17.4 kB] Get:122 http://deb.debian.org/debian buster/main amd64 clustalo amd64 1.2.4-2 [265 kB] Get:123 http://deb.debian.org/debian buster/main amd64 clustalw amd64 2.1+lgpl-6 [282 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libisl19 amd64 0.20-2 [587 kB] Get:125 http://deb.debian.org/debian buster/main amd64 libmpc3 amd64 1.1.0-1 [41.3 kB] Get:126 http://deb.debian.org/debian buster/main amd64 cpp-8 amd64 8.3.0-6 [8914 kB] Get:127 http://deb.debian.org/debian buster/main amd64 cpp amd64 4:8.3.0-1 [19.4 kB] Get:128 http://deb.debian.org/debian buster/main amd64 python3-typed-ast amd64 1.3.1-1 [138 kB] Get:129 http://deb.debian.org/debian buster/main amd64 python3-mypy-extensions all 0.4.1-1 [5234 B] Get:130 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:131 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:132 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:133 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:134 http://deb.debian.org/debian buster/main amd64 python3-mypy all 0.670-2 [781 kB] Get:135 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:136 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libxslt1.1 amd64 1.1.32-2.2~deb10u1 [237 kB] Get:138 http://deb.debian.org/debian buster/main amd64 python3-lxml amd64 4.3.2-1+deb10u4 [1163 kB] Get:139 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:140 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:141 http://deb.debian.org/debian buster/main amd64 python3-isodate all 0.6.0-1 [24.9 kB] Get:142 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:143 http://deb.debian.org/debian buster/main amd64 python3-rdflib all 4.2.2-2 [258 kB] Get:144 http://deb.debian.org/debian buster/main amd64 python3-prov all 1.5.2-1 [94.4 kB] Get:145 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:146 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:147 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:148 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:149 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:150 http://deb.debian.org/debian buster/main amd64 python3-ruamel.yaml amd64 0.15.34-1+b1 [248 kB] Get:151 http://deb.debian.org/debian buster/main amd64 python3-cachecontrol all 0.11.7-1 [15.2 kB] Get:152 http://deb.debian.org/debian buster/main amd64 python3-lockfile all 1:0.12.2-2 [17.1 kB] Get:153 http://deb.debian.org/debian buster/main amd64 python3-mistune all 0.8.4-1 [16.1 kB] Get:154 http://deb.debian.org/debian buster/main amd64 python3-rdflib-jsonld all 0.4.0-4 [12.3 kB] Get:155 http://deb.debian.org/debian buster/main amd64 python3-typing-extensions all 3.7.2-1 [23.0 kB] Get:156 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get:157 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get:158 http://deb.debian.org/debian buster/main amd64 python3-schema-salad all 3.0.20181206233650-2 [272 kB] Get:159 http://deb.debian.org/debian buster/main amd64 python3-shellescape all 3.4.1-3 [4800 B] Get:160 http://deb.debian.org/debian buster/main amd64 cwltool all 1.0.20181217162649+dfsg-10 [176 kB] Get:161 http://deb.debian.org/debian buster/main amd64 dialign amd64 2.2.1-10 [139 kB] Get:162 http://deb.debian.org/debian buster/main amd64 dialign-tx-data all 1.0.2-12 [869 kB] Get:163 http://deb.debian.org/debian buster/main amd64 dialign-tx amd64 1.0.2-12 [76.9 kB] Get:164 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:166 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:167 http://deb.debian.org/debian buster/main amd64 fonts-liberation all 1:1.07.4-9 [827 kB] Get:168 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:169 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:177 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1 [340 kB] Get:182 http://deb.debian.org/debian buster/main amd64 mysql-common all 5.8+1.0.5 [7324 B] Get:183 http://deb.debian.org/debian buster/main amd64 mariadb-common all 1:10.3.34-0+deb10u1 [33.0 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libmariadb3 amd64 1:10.3.34-0+deb10u1 [173 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.16-0+deb10u1 [172 kB] Get:186 http://deb.debian.org/debian buster/main amd64 emboss-lib amd64 6.6.0+dfsg-7+b1 [2786 kB] Get:187 http://deb.debian.org/debian buster/main amd64 emboss-data all 6.6.0+dfsg-7 [61.1 MB] Get:188 http://deb.debian.org/debian buster/main amd64 emboss amd64 6.6.0+dfsg-7+b1 [1073 kB] Get:189 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:190 http://deb.debian.org/debian buster/main amd64 exonerate amd64 2.4.0-4 [1544 kB] Get:191 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:192 http://deb.debian.org/debian buster/main amd64 fonts-noto-mono all 20181227-1 [83.1 kB] Get:193 http://deb.debian.org/debian buster/main amd64 mummer amd64 3.23+dfsg-4 [809 kB] Get:194 http://deb.debian.org/debian buster/main amd64 fsa amd64 1.15.9+dfsg-4 [740 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libcc1-0 amd64 8.3.0-6 [46.6 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libitm1 amd64 8.3.0-6 [27.7 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libasan5 amd64 8.3.0-6 [362 kB] Get:198 http://deb.debian.org/debian buster/main amd64 liblsan0 amd64 8.3.0-6 [131 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libtsan0 amd64 8.3.0-6 [283 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libubsan1 amd64 8.3.0-6 [120 kB] Get:201 http://deb.debian.org/debian buster/main amd64 libmpx2 amd64 8.3.0-6 [11.4 kB] Get:202 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:203 http://deb.debian.org/debian buster/main amd64 libgcc-8-dev amd64 8.3.0-6 [2298 kB] Get:204 http://deb.debian.org/debian buster/main amd64 gcc-8 amd64 8.3.0-6 [9452 kB] Get:205 http://deb.debian.org/debian buster/main amd64 gcc amd64 4:8.3.0-1 [5196 B] Get:206 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:207 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:208 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:209 http://deb.debian.org/debian buster/main amd64 libstdc++-8-dev amd64 8.3.0-6 [1532 kB] Get:210 http://deb.debian.org/debian buster/main amd64 g++-8 amd64 8.3.0-6 [9752 kB] Get:211 http://deb.debian.org/debian buster/main amd64 g++ amd64 4:8.3.0-1 [1644 B] Get:212 http://deb.debian.org/debian buster/main amd64 gdal-data all 2.4.0+dfsg-1 [744 kB] Get:213 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:214 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get:215 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get:216 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get:217 http://deb.debian.org/debian buster/main amd64 libgs9-common all 9.27~dfsg-2+deb10u5 [5136 kB] Get:218 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get:219 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get:220 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get:221 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u6 [325 kB] Get:222 http://deb.debian.org/debian buster/main amd64 libcupsimage2 amd64 2.2.10-6+deb10u6 [133 kB] Get:223 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:224 http://deb.debian.org/debian buster/main amd64 libijs-0.35 amd64 0.35-14 [18.3 kB] Get:225 http://deb.debian.org/debian buster/main amd64 libjbig2dec0 amd64 0.16-1+deb10u1 [62.2 kB] Get:226 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:227 http://deb.debian.org/debian buster/main amd64 libopenjp2-7 amd64 2.3.0-2+deb10u2 [158 kB] Get:228 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:229 http://deb.debian.org/debian buster/main amd64 libgs9 amd64 9.27~dfsg-2+deb10u5 [2198 kB] Get:230 http://deb.debian.org/debian buster/main amd64 ghostscript amd64 9.27~dfsg-2+deb10u5 [95.0 kB] Get:231 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:232 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:233 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:234 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:235 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:236 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:237 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:238 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:239 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:240 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:241 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:242 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:243 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:244 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:245 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:246 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:247 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:248 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:249 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:250 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:251 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:252 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:253 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:254 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:255 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:256 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:257 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:258 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:259 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:260 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:261 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:262 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:263 http://deb.debian.org/debian buster/main amd64 gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3125 kB] Get:264 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:265 http://deb.debian.org/debian buster/main amd64 hmmer amd64 3.2.1+dfsg-1 [1169 kB] Get:266 http://deb.debian.org/debian buster/main amd64 hyphy-common all 2.3.14+dfsg-1 [661 kB] Get:267 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:268 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:269 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:270 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:271 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:272 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:273 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:274 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:275 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:276 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:277 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:278 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:279 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:280 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:281 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:282 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:283 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:284 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:285 http://deb.debian.org/debian buster/main amd64 hyphy-mpi amd64 2.3.14+dfsg-1 [919 kB] Get:286 http://deb.debian.org/debian buster/main amd64 ibverbs-providers amd64 22.1-1 [187 kB] Get:287 http://deb.debian.org/debian buster/main amd64 infernal amd64 1.1.2-2 [22.1 MB] Get:288 http://deb.debian.org/debian buster/main amd64 javascript-common all 11 [6120 B] Get:289 http://deb.debian.org/debian buster/main amd64 kalign amd64 1:2.03+20110620-5 [92.9 kB] Get:290 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get:291 http://deb.debian.org/debian buster/main amd64 libipc-sharelite-perl amd64 0.17-4+b3 [24.6 kB] Get:292 http://deb.debian.org/debian buster/main amd64 libcache-cache-perl all 1.08-2 [76.6 kB] Get:293 http://deb.debian.org/debian buster/main amd64 libace-perl amd64 1.92-8+b1 [287 kB] Get:294 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:295 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-xs-perl amd64 0.04-5+b1 [11.8 kB] Get:296 http://deb.debian.org/debian buster/main amd64 libalgorithm-munkres-perl all 0.08-3 [12.1 kB] Get:297 http://deb.debian.org/debian buster/main amd64 libdevel-symdump-perl all 2.18-3 [17.3 kB] Get:298 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:299 http://deb.debian.org/debian buster/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:300 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:301 http://deb.debian.org/debian buster/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:302 http://deb.debian.org/debian buster/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:303 http://deb.debian.org/debian buster/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:304 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:305 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:306 http://deb.debian.org/debian buster/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:307 http://deb.debian.org/debian buster/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:308 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:309 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:310 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:311 http://deb.debian.org/debian buster/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:312 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:313 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:314 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:315 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:316 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:317 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:318 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:319 http://deb.debian.org/debian buster/main amd64 libapache2-mod-perl2 amd64 2.0.10-3 [885 kB] Get:320 http://deb.debian.org/debian buster/main amd64 libdbi-perl amd64 1.642-1+deb10u2 [775 kB] Get:321 http://deb.debian.org/debian buster/main amd64 libapache-dbi-perl all 1.12-2 [50.7 kB] Get:322 http://deb.debian.org/debian buster/main amd64 libapache2-reload-perl all 0.13-2 [17.0 kB] Get:323 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:324 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:325 http://deb.debian.org/debian buster/main amd64 libarpack2 amd64 3.7.0-2 [102 kB] Get:326 http://deb.debian.org/debian buster/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [161 kB] Get:327 http://deb.debian.org/debian buster/main amd64 libarmadillo9 amd64 1:9.200.7+dfsg-1 [88.6 kB] Get:328 http://deb.debian.org/debian buster/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:329 http://deb.debian.org/debian buster/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:330 http://deb.debian.org/debian buster/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:331 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:332 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:333 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:334 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:335 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:336 http://deb.debian.org/debian buster/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:337 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:338 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get:339 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get:340 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:341 http://deb.debian.org/debian buster/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:342 http://deb.debian.org/debian buster/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:343 http://deb.debian.org/debian buster/main amd64 libarray-compare-perl all 3.0.2-1 [14.5 kB] Get:344 http://deb.debian.org/debian buster/main amd64 libauthen-sasl-perl all 2.1600-1 [50.8 kB] Get:345 http://deb.debian.org/debian buster/main amd64 libbio-asn1-entrezgene-perl all 1.720-2 [38.7 kB] Get:346 http://deb.debian.org/debian buster/main amd64 libcarp-clan-perl all 6.07-1 [15.3 kB] Get:347 http://deb.debian.org/debian buster/main amd64 libbit-vector-perl amd64 7.4-1+b5 [146 kB] Get:348 http://deb.debian.org/debian buster/main amd64 libbsd-resource-perl amd64 1.2911-1+b3 [33.8 kB] Get:349 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1+deb10u1 [86.1 kB] Get:350 http://deb.debian.org/debian buster/main amd64 libcaf-openmpi-3 amd64 2.4.0-2 [35.6 kB] Get:351 http://deb.debian.org/debian buster/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:352 http://deb.debian.org/debian buster/main amd64 libfcgi-perl amd64 0.78-2+b3 [39.0 kB] Get:353 http://deb.debian.org/debian buster/main amd64 libcgi-fast-perl all 1:2.13-1 [11.4 kB] Get:354 http://deb.debian.org/debian buster/main amd64 libcharls2 amd64 2.0.0+dfsg-1 [64.3 kB] Get:355 http://deb.debian.org/debian buster/main amd64 libclass-inspector-perl all 1.32-1 [19.1 kB] Get:356 http://deb.debian.org/debian buster/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b2 [38.0 kB] Get:357 http://deb.debian.org/debian buster/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:358 http://deb.debian.org/debian buster/main amd64 libcoarrays-dev amd64 2.4.0-2 [29.1 kB] Get:359 http://deb.debian.org/debian buster/main amd64 openmpi-common all 3.1.3-11 [165 kB] Get:360 http://deb.debian.org/debian buster/main amd64 openmpi-bin amd64 3.1.3-11 [200 kB] Get:361 http://deb.debian.org/debian buster/main amd64 libcoarrays-openmpi-dev amd64 2.4.0-2 [35.2 kB] Get:362 http://deb.debian.org/debian buster/main amd64 libconvert-binary-c-perl amd64 0.78-1+b4 [272 kB] Get:363 http://deb.debian.org/debian buster/main amd64 libconvert-binhex-perl all 1.125-1 [30.5 kB] Get:364 http://deb.debian.org/debian buster/main amd64 libcrypt-rc4-perl all 2.02-3 [7704 B] Get:365 http://deb.debian.org/debian buster/main amd64 libcupsfilters1 amd64 1.21.6-5 [172 kB] Get:366 http://deb.debian.org/debian buster/main amd64 libdap25 amd64 3.20.3-1 [557 kB] Get:367 http://deb.debian.org/debian buster/main amd64 libdapclient6v5 amd64 3.20.3-1 [202 kB] Get:368 http://deb.debian.org/debian buster/main amd64 libdapserver7v5 amd64 3.20.3-1 [131 kB] Get:369 http://deb.debian.org/debian buster/main amd64 libdata-dump-perl all 1.23-1 [29.5 kB] Get:370 http://deb.debian.org/debian buster/main amd64 libdate-calc-perl all 6.4-1 [194 kB] Get:371 http://deb.debian.org/debian buster/main amd64 libdate-calc-xs-perl amd64 6.4-1+b4 [55.1 kB] Get:372 http://deb.debian.org/debian buster/main amd64 libdate-manip-perl all 6.76-1 [930 kB] Get:373 http://deb.debian.org/debian buster/main amd64 libdbd-mysql-perl amd64 4.050-2 [121 kB] Get:374 http://deb.debian.org/debian buster/main amd64 libdbd-pg-perl amd64 3.7.4-3 [207 kB] Get:375 http://deb.debian.org/debian buster/main amd64 libdbd-sqlite3-perl amd64 1.62-3 [177 kB] Get:376 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:377 http://deb.debian.org/debian buster/main amd64 libdigest-perl-md5-perl all 1.9-1 [11.7 kB] Get:378 http://deb.debian.org/debian buster/main amd64 libpopt0 amd64 1.16-12 [49.4 kB] Get:379 http://deb.debian.org/debian buster/main amd64 libepsilon1 amd64 0.9.2+dfsg-4 [42.0 kB] Get:380 http://deb.debian.org/debian buster/main amd64 libfile-slurp-tiny-perl all 0.004-1 [7288 B] Get:381 http://deb.debian.org/debian buster/main amd64 libfont-afm-perl all 1.20-2 [13.6 kB] Get:382 http://deb.debian.org/debian buster/main amd64 libfreexl1 amd64 1.0.5-3 [34.1 kB] Get:383 http://deb.debian.org/debian buster/main amd64 libfreezethaw-perl all 0.5001-2 [16.8 kB] Get:384 http://deb.debian.org/debian buster/main amd64 libfyba0 amd64 4.1.1-6 [114 kB] Get:385 http://deb.debian.org/debian buster/main amd64 libgd-perl amd64 2.71-2 [140 kB] Get:386 http://deb.debian.org/debian buster/main amd64 libgeos-3.7.1 amd64 3.7.1-1 [735 kB] Get:387 http://deb.debian.org/debian buster/main amd64 libgeos-c1v5 amd64 3.7.1-1 [299 kB] Get:388 http://deb.debian.org/debian buster/main amd64 proj-data all 5.2.0-1 [6986 kB] Get:389 http://deb.debian.org/debian buster/main amd64 libproj13 amd64 5.2.0-1 [225 kB] Get:390 http://deb.debian.org/debian buster/main amd64 libgeotiff2 amd64 1.4.3-1 [72.0 kB] Get:391 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:392 http://deb.debian.org/debian buster/main amd64 libhdf4-0-alt amd64 4.2.13-4 [277 kB] Get:393 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:394 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:395 http://deb.debian.org/debian buster/main amd64 libjson-c3 amd64 0.12.1+ds-2+deb10u1 [27.3 kB] Get:396 http://deb.debian.org/debian buster/main amd64 libminizip1 amd64 1.1-8+b1 [20.4 kB] Get:397 http://deb.debian.org/debian buster/main amd64 liburiparser1 amd64 0.9.1-1+deb10u1 [48.1 kB] Get:398 http://deb.debian.org/debian buster/main amd64 libkmlbase1 amd64 1.3.0-7 [48.9 kB] Get:399 http://deb.debian.org/debian buster/main amd64 libkmldom1 amd64 1.3.0-7 [172 kB] Get:400 http://deb.debian.org/debian buster/main amd64 libkmlengine1 amd64 1.3.0-7 [78.4 kB] Get:401 http://deb.debian.org/debian buster/main amd64 libkmlconvenience1 amd64 1.3.0-7 [50.1 kB] Get:402 http://deb.debian.org/debian buster/main amd64 libkmlregionator1 amd64 1.3.0-7 [25.1 kB] Get:403 http://deb.debian.org/debian buster/main amd64 libkmlxsd1 amd64 1.3.0-7 [34.6 kB] Get:404 http://deb.debian.org/debian buster/main amd64 libnetcdf13 amd64 1:4.6.2-1 [403 kB] Get:405 http://deb.debian.org/debian buster/main amd64 libodbc1 amd64 2.3.6-0.1 [223 kB] Get:406 http://deb.debian.org/debian buster/main amd64 libogdi3.2 amd64 3.2.1+ds-4 [241 kB] Get:407 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:408 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:409 http://deb.debian.org/debian buster/main amd64 libpoppler82 amd64 0.71.0-5 [1507 kB] Get:410 http://deb.debian.org/debian buster/main amd64 libqhull7 amd64 2015.2-4 [196 kB] Get:411 http://deb.debian.org/debian buster/main amd64 libspatialite7 amd64 4.3.0a-5+b2 [1256 kB] Get:412 http://deb.debian.org/debian buster/main amd64 libxerces-c3.2 amd64 3.2.2+debian-1+deb10u1 [886 kB] Get:413 http://deb.debian.org/debian buster/main amd64 odbcinst amd64 2.3.6-0.1 [48.4 kB] Get:414 http://deb.debian.org/debian buster/main amd64 odbcinst1debian2 amd64 2.3.6-0.1 [78.1 kB] Get:415 http://deb.debian.org/debian buster/main amd64 libgdal20 amd64 2.4.0+dfsg-1+b1 [6171 kB] Get:416 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get:417 http://deb.debian.org/debian buster/main amd64 libgpm2 amd64 1.20.7-5 [35.1 kB] Get:418 http://deb.debian.org/debian buster/main amd64 libgraph-perl all 1:0.9704-1 [119 kB] Get:419 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:420 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:421 http://deb.debian.org/debian buster/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:422 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:423 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get:424 http://deb.debian.org/debian buster/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:425 http://deb.debian.org/debian buster/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:426 http://deb.debian.org/debian buster/main amd64 libgts-bin amd64 0.7.6+darcs121130-4 [50.8 kB] Get:427 http://deb.debian.org/debian buster/main amd64 libhtml-form-perl all 6.03-1 [23.9 kB] Get:428 http://deb.debian.org/debian buster/main amd64 libhtml-format-perl all 2.12-1 [43.5 kB] Get:429 http://deb.debian.org/debian buster/main amd64 libhtml-tableextract-perl all 2.15-1 [30.2 kB] Get:430 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get:431 http://deb.debian.org/debian buster/main amd64 libhttp-daemon-perl all 6.01-3 [16.6 kB] Get:432 http://deb.debian.org/debian buster/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:433 http://deb.debian.org/debian buster/main amd64 libltdl-dev amd64 2.4.6-9 [162 kB] Get:434 http://deb.debian.org/debian buster/main amd64 libhwloc-dev amd64 1.11.12-3 [175 kB] Get:435 http://deb.debian.org/debian buster/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:436 http://deb.debian.org/debian buster/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:437 http://deb.debian.org/debian buster/main amd64 libibverbs-dev amd64 22.1-1 [362 kB] Get:438 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:439 http://deb.debian.org/debian buster/main amd64 libio-sessiondata-perl all 1.03-1 [5782 B] Get:440 http://deb.debian.org/debian buster/main amd64 libio-stringy-perl all 2.111-3 [56.5 kB] Get:441 http://deb.debian.org/debian buster/main amd64 libjcode-pm-perl amd64 2.06-1 [30.9 kB] Get:442 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:443 http://deb.debian.org/debian buster/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:444 http://deb.debian.org/debian buster/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:445 http://deb.debian.org/debian buster/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:446 http://deb.debian.org/debian buster/main amd64 libmath-derivative-perl all 1.01-1 [8956 B] Get:447 http://deb.debian.org/debian buster/main amd64 libmath-spline-perl all 0.02-2 [7644 B] Get:448 http://deb.debian.org/debian buster/main amd64 libmime-tools-perl all 5.509-1 [212 kB] Get:449 http://deb.debian.org/debian buster/main amd64 libmldbm-perl all 2.05-2 [18.4 kB] Get:450 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:451 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get:452 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get:453 http://deb.debian.org/debian buster/main amd64 libole-storage-lite-perl all 0.19-2+deb10u1 [24.0 kB] Get:454 http://deb.debian.org/debian buster/main amd64 libopenmpi-dev amd64 3.1.3-11 [974 kB] Get:455 http://deb.debian.org/debian buster/main amd64 libossp-uuid16 amd64 1.6.2-1.5+b7 [38.1 kB] Get:456 http://deb.debian.org/debian buster/main amd64 libossp-uuid-perl amd64 1.6.2-1.5+b7 [28.7 kB] Get:457 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:458 http://deb.debian.org/debian buster/main amd64 libpostscript-perl all 0.06-3 [25.9 kB] Get:459 http://deb.debian.org/debian buster/main amd64 libreadonly-perl all 2.050-1 [22.7 kB] Get:460 http://deb.debian.org/debian buster/main amd64 libref-util-perl all 0.204-1 [17.1 kB] Get:461 http://deb.debian.org/debian buster/main amd64 libref-util-xs-perl amd64 0.117-1+b1 [14.0 kB] Get:462 http://deb.debian.org/debian buster/main amd64 rubygems-integration all 1.11+deb10u1 [5212 B] Get:463 http://deb.debian.org/debian buster/main amd64 ruby2.5 amd64 2.5.5-3+deb10u4 [400 kB] Get:464 http://deb.debian.org/debian buster/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get:465 http://deb.debian.org/debian buster/main amd64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get:466 http://deb.debian.org/debian buster/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get:467 http://deb.debian.org/debian buster/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get:468 http://deb.debian.org/debian buster/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:469 http://deb.debian.org/debian buster/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get:470 http://deb.debian.org/debian buster/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get:471 http://deb.debian.org/debian buster/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get:472 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:473 http://deb.debian.org/debian buster/main amd64 libruby2.5 amd64 2.5.5-3+deb10u4 [3442 kB] Get:474 http://deb.debian.org/debian buster/main amd64 libsasl2-modules amd64 2.1.27+dfsg-1+deb10u2 [104 kB] Get:475 http://deb.debian.org/debian buster/main amd64 libset-scalar-perl all 1.29-2 [31.4 kB] Get:476 http://deb.debian.org/debian buster/main amd64 libtask-weaken-perl all 1.06-1 [9252 B] Get:477 http://deb.debian.org/debian buster/main amd64 libsoap-lite-perl all 1.27-1 [258 kB] Get:478 http://deb.debian.org/debian buster/main amd64 libsort-naturally-perl all 1.03-2 [13.5 kB] Get:479 http://deb.debian.org/debian buster/main amd64 libspreadsheet-writeexcel-perl all 2.40-1 [550 kB] Get:480 http://deb.debian.org/debian buster/main amd64 libunicode-map-perl amd64 0.112-12+b1 [145 kB] Get:481 http://deb.debian.org/debian buster/main amd64 libspreadsheet-parseexcel-perl all 0.6500-1 [159 kB] Get:482 http://deb.debian.org/debian buster/main amd64 libstatistics-descriptive-perl all 3.0702-1 [64.8 kB] Get:483 http://deb.debian.org/debian buster/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:484 http://deb.debian.org/debian buster/main amd64 libsvg-perl all 2.84-1 [67.9 kB] Get:485 http://deb.debian.org/debian buster/main amd64 libtree-dagnode-perl all 1.31-1 [61.4 kB] Get:486 http://deb.debian.org/debian buster/main amd64 libsvg-graph-perl all 0.02-3 [114 kB] Get:487 http://deb.debian.org/debian buster/main amd64 libtext-iconv-perl amd64 1.7-5+b7 [15.4 kB] Get:488 http://deb.debian.org/debian buster/main amd64 libtie-ixhash-perl all 1.23-2 [11.7 kB] Get:489 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get:490 http://deb.debian.org/debian buster/main amd64 libtype-tiny-xs-perl amd64 0.014-1+b1 [24.4 kB] Get:491 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:492 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:493 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:494 http://deb.debian.org/debian buster/main amd64 libxml-perl all 0.08-3 [93.3 kB] Get:495 http://deb.debian.org/debian buster/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:496 http://deb.debian.org/debian buster/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:497 http://deb.debian.org/debian buster/main amd64 libxml-xpathengine-perl all 0.14-1 [33.3 kB] Get:498 http://deb.debian.org/debian buster/main amd64 libxml-dom-xpath-perl all 0.14-3 [9066 B] Get:499 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:500 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:501 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:502 http://deb.debian.org/debian buster/main amd64 libxml-filter-buffertext-perl all 1.01-6 [6916 B] Get:503 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:504 http://deb.debian.org/debian buster/main amd64 libxml-libxslt-perl amd64 1.96-1+b1 [47.5 kB] Get:505 http://deb.debian.org/debian buster/main amd64 libxml-sax-expat-perl all 0.51-1 [12.0 kB] Get:506 http://deb.debian.org/debian buster/main amd64 libxml-sax-writer-perl all 0.57-1 [22.6 kB] Get:507 http://deb.debian.org/debian buster/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:508 http://deb.debian.org/debian buster/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:509 http://deb.debian.org/debian buster/main amd64 libxmlrpc-lite-perl all 0.717-2 [22.3 kB] Get:510 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get:511 http://deb.debian.org/debian buster/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:512 http://deb.debian.org/debian buster/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:513 http://deb.debian.org/debian buster/main amd64 lynx-common all 2.8.9rel.1-3+deb10u1 [1212 kB] Get:514 http://deb.debian.org/debian buster/main amd64 lynx amd64 2.8.9rel.1-3+deb10u1 [642 kB] Get:515 http://deb.debian.org/debian buster/main amd64 mafft amd64 7.407-2 [999 kB] Get:516 http://deb.debian.org/debian buster/main amd64 manpages-dev all 4.16-2 [2232 kB] Get:517 http://deb.debian.org/debian buster/main amd64 maq amd64 0.7.1-8 [313 kB] Get:518 http://deb.debian.org/debian buster/main amd64 med-config all 3.3 [18.7 kB] Get:519 http://deb.debian.org/debian buster/main amd64 muscle amd64 1:3.8.1551-2 [245 kB] Get:520 http://deb.debian.org/debian buster/main amd64 mustang amd64 3.2.3-3 [105 kB] Get:521 http://deb.debian.org/debian buster/main amd64 ncoils amd64 2002-7 [21.9 kB] Get:522 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get:523 http://deb.debian.org/debian buster/main amd64 nodejs-doc all 10.24.0~dfsg-1~deb10u1 [974 kB] Get:524 http://deb.debian.org/debian buster/main amd64 perl-doc all 5.28.1-6+deb10u1 [7654 kB] Get:525 http://deb.debian.org/debian buster/main amd64 perl-tk amd64 1:804.033-2+b3 [1952 kB] Get:526 http://deb.debian.org/debian buster/main amd64 phylip amd64 1:3.697+dfsg-1 [910 kB] Get:527 http://deb.debian.org/debian buster/main amd64 phyml amd64 3:3.3.20180621-2 [1653 kB] Get:528 http://deb.debian.org/debian buster/main amd64 poa amd64 2.0+20060928-7 [53.0 kB] Get:529 http://deb.debian.org/debian buster/main amd64 prank amd64 0.0.170427+dfsg-2 [375 kB] Get:530 http://deb.debian.org/debian buster/main amd64 primer3 amd64 2.4.0-2 [180 kB] Get:531 http://deb.debian.org/debian buster/main amd64 probalign amd64 1.4-8 [66.2 kB] Get:532 http://deb.debian.org/debian buster/main amd64 probcons amd64 1.12-12 [116 kB] Get:533 http://deb.debian.org/debian buster/main amd64 proda amd64 1.0-12 [63.7 kB] Get:534 http://deb.debian.org/debian buster/main amd64 proj-bin amd64 5.2.0-1 [105 kB] Get:535 http://deb.debian.org/debian buster/main amd64 publicsuffix all 20220811.1734-0+deb10u1 [127 kB] Get:536 http://deb.debian.org/debian buster/main amd64 python3-soupsieve all 1.8+dfsg-1 [27.6 kB] Get:537 http://deb.debian.org/debian buster/main amd64 python3-bs4 all 4.7.1-1 [94.1 kB] Get:538 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:539 http://deb.debian.org/debian buster/main amd64 python3-gdal amd64 2.4.0+dfsg-1+b1 [601 kB] Get:540 http://deb.debian.org/debian buster/main amd64 python3-webencodings all 0.5.1-1 [10.9 kB] Get:541 http://deb.debian.org/debian buster/main amd64 python3-html5lib all 1.0.1-1 [89.5 kB] Get:542 http://deb.debian.org/debian buster/main amd64 python3-olefile all 0.46-1 [35.9 kB] Get:543 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:544 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:545 http://deb.debian.org/debian buster/main amd64 python3-sparqlwrapper all 1.8.2-0.1 [28.4 kB] Get:546 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:547 http://deb.debian.org/debian buster/main amd64 raxml amd64 8.2.12+dfsg-1 [1275 kB] Get:548 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get:549 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get:550 http://deb.debian.org/debian buster/main amd64 sim4 amd64 0.0.20121010-5 [396 kB] Get:551 http://deb.debian.org/debian buster/main amd64 t-coffee amd64 12.00.7fb08c2-4 [1520 kB] Get:552 http://deb.debian.org/debian buster/main amd64 tigr-glimmer amd64 3.02b-2 [282 kB] Get:553 http://deb.debian.org/debian buster/main amd64 tm-align amd64 20170708+dfsg-2 [871 kB] Get:554 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:555 http://deb.debian.org/debian buster/main amd64 wise-data all 2.4.1-21 [109 kB] Get:556 http://deb.debian.org/debian buster/main amd64 wise amd64 2.4.1-21 [978 kB] Get:557 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get:558 http://deb.debian.org/debian buster/main amd64 xdg-user-dirs amd64 0.17-2 [53.8 kB] Get:559 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 349 MB in 7s (52.4 MB/s) Selecting previously unselected package perl-modules-5.28. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6464 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.28_5.28.1-6+deb10u1_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6+deb10u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-4_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-4) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking sim4 (0.0.20121010-5) ... Selecting previously unselected package t-coffee. Preparing to unpack .../516-t-coffee_12.00.7fb08c2-4_amd64.deb ... Unpacking t-coffee (12.00.7fb08c2-4) ... Selecting previously unselected package tigr-glimmer. Preparing to unpack .../517-tigr-glimmer_3.02b-2_amd64.deb ... Unpacking tigr-glimmer (3.02b-2) ... Selecting previously unselected package tm-align. Preparing to unpack .../518-tm-align_20170708+dfsg-2_amd64.deb ... Unpacking tm-align (20170708+dfsg-2) ... Selecting previously unselected package unzip. Preparing to unpack .../519-unzip_6.0-23+deb10u2_amd64.deb ... Unpacking unzip (6.0-23+deb10u2) ... Selecting previously unselected package wise-data. Preparing to unpack .../520-wise-data_2.4.1-21_all.deb ... Unpacking wise-data (2.4.1-21) ... Selecting previously unselected package wise. Preparing to unpack .../521-wise_2.4.1-21_amd64.deb ... Unpacking wise (2.4.1-21) ... Selecting previously unselected package xauth. 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Setting up mysql-common (5.8+1.0.5) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libapparmor1:amd64 (2.13.2-10) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up fonts-lato (2.0-2) ... Setting up libgpm2:amd64 (1.20.7-5) ... Setting up mime-support (3.62) ... Setting up proj-data (5.2.0-1) ... Setting up fonts-noto-mono (20181227-1) ... Setting up probcons (1.12-12) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up poa (2.0+20060928-7) ... Setting up xdg-user-dirs (0.17-2) ... Setting up ruby-power-assert (1.1.1-1) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libcharls2:amd64 (2.0.0+dfsg-1) ... Setting up libminizip1:amd64 (1.1-8+b1) ... Setting up gawk (1:4.2.1+dfsg-1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up manpages (4.16-2) ... Setting up bwa (0.7.17-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... Setting up libijs-0.35:amd64 (0.35-14) ... Setting up unzip (6.0-23+deb10u2) ... Setting up libbrotli1:amd64 (1.0.7-2+deb10u1) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up liblab-gamut1 (2.40.1-6+deb10u1) ... Setting up libproj13:amd64 (5.2.0-1) ... Setting up phylip (1:3.697+dfsg-1) ... Setting up binutils-common:amd64 (2.31.1-16) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... 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Setting up libjansson4:amd64 (2.12-1) ... Setting up t-coffee (12.00.7fb08c2-4) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up ruby-minitest (5.11.3-1) ... Setting up mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up infernal (1.1.2-2) ... Setting up libasan5:amd64 (8.3.0-6) ... Setting up primer3 (2.4.0-2) ... Setting up zip (3.0-11+b1) ... Setting up kalign (1:2.03+20110620-5) ... Setting up autotools-dev (20180224.1) ... Setting up libglib2.0-data (2.58.3-2+deb10u3) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up dialign-tx-data (1.0.2-12) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up mustang (3.2.3-3) ... Setting up ruby-test-unit (3.2.8-1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up libjbig2dec0:amd64 (0.16-1+deb10u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up proda (1.0-12) ... Setting up sim4 (0.0.20121010-5) ... Setting up libpathplan4 (2.40.1-6+deb10u1) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up xz-utils (5.2.4-1+deb10u1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libmpc3:amd64 (1.1.0-1) ... Setting up libatomic1:amd64 (8.3.0-6) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up libgeos-c1v5:amd64 (3.7.1-1) ... Setting up libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up wise-data (2.4.1-21) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u4) ... Setting up lynx-common (2.8.9rel.1-3+deb10u1) ... Setting up amap-align (2.2+git20080214.600fc29+dfsg-1) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... 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Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up netbase (5.6) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up ruby-did-you-mean (1.2.1-1) ... Setting up libbinutils:amd64 (2.31.1-16) ... Setting up cpp-8 (8.3.0-6) ... Setting up menu (2.1.47+b1) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up libdivsufsort3:amd64 (2.0.1-4) ... Setting up openssl (1.1.1n-0+deb10u3) ... 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Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up libdap25:amd64 (3.20.3-1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up binutils (2.31.1-16) ... Setting up clustalo (1.2.4-2) ... Setting up libaprutil1-ldap:amd64 (1.6.1-4) ... Setting up tm-align (20170708+dfsg-2) ... Setting up libepsilon1:amd64 (0.9.2+dfsg-4) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Setting up libdapserver7v5:amd64 (3.20.3-1) ... Setting up python2 (2.7.16-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libgeotiff2:amd64 (1.4.3-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libkmlregionator1:amd64 (1.3.0-7) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libodbc1:amd64 (2.3.6-0.1) ... Setting up ucf (3.0038+nmu1) ... Setting up libgcc-8-dev:amd64 (8.3.0-6) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up cpp (4:8.3.0-1) ... Setting up libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Setting up hmmer (3.2.1+dfsg-1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up lynx (2.8.9rel.1-3+deb10u1) ... update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up python (2.7.16-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... Setting up libgfortran-8-dev:amd64 (8.3.0-6) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gcc-8 (8.3.0-6) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up bowtie (1.2.2+dfsg-4) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up ibverbs-providers:amd64 (22.1-1) ... Setting up libtool (2.4.6-9) ... Setting up fontconfig-config (2.13.1-2) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libarpack2:amd64 (3.7.0-2) ... Setting up libpq5:amd64 (11.16-0+deb10u1) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up libnetcdf13:amd64 (1:4.6.2-1) ... Setting up python3 (3.7.3-1) ... Setting up rubygems-integration (1.11+deb10u1) ... 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Setting up libio-html-perl (1.001-1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up python3-typing-extensions (3.7.2-1) ... Setting up libmath-derivative-perl (1.01-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up python3-html5lib (1.0.1-1) ... Setting up autoconf (2.69-11) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up libset-scalar-perl (1.29-2) ... Setting up libcups2:amd64 (2.2.10-6+deb10u6) ... Setting up python3-ruamel.yaml (0.15.34-1+b1) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libtype-tiny-xs-perl (0.014-1+b1) ... Setting up g++-8 (8.3.0-6) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up xauth (1:1.0.10-1) ... Setting up python3-lxml:amd64 (4.3.2-1+deb10u4) ... Setting up python3-rdflib (4.2.2-2) ... Setting up libdapclient6v5:amd64 (3.20.3-1) ... Setting up mummer (3.23+dfsg-4) ... Setting up libfcgi-perl (0.78-2+b3) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up libcarp-clan-perl (6.07-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up libstrictures-perl (2.000005-1) ... Setting up libsub-quote-perl (2.005001-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b2) ... Setting up libdevel-symdump-perl (2.18-3) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-shellescape (3.4.1-3) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up libpostscript-perl (0.06-3) ... Setting up python3-mistune (0.8.4-1) ... Setting up libsort-naturally-perl (1.03-2) ... Setting up python3-soupsieve (1.8+dfsg-1) ... Setting up liburi-perl (1.76-1) ... Setting up libdbi-perl:amd64 (1.642-1+deb10u2) ... Setting up libdate-manip-perl (6.76-1) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up libmath-spline-perl (0.02-2) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.7.3-1) ... Setting up libjcode-pm-perl (2.06-1) ... Setting up libio-sessiondata-perl (1.03-1) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up python3-lockfile (1:0.12.2-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up python3-rdflib-jsonld (0.4.0-4) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libtie-ixhash-perl (1.23-2) ... Setting up libtask-weaken-perl (1.06-1) ... Setting up libossp-uuid-perl (1.6.2-1.5+b7) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Setting up python3-sparqlwrapper (1.8.2-0.1) ... Setting up libconvert-binary-c-perl (0.78-1+b4) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up libclass-inspector-perl (1.32-1) ... Setting up libfont-afm-perl (1.20-2) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtest-deep-perl (1.128-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up libref-util-xs-perl (0.117-1+b1) ... Setting up libalgorithm-munkres-perl (0.08-3) ... Setting up perl-tk (1:804.033-2+b3) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up mafft (7.407-2) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up python3-typed-ast (1.3.1-1) ... Setting up libio-stringy-perl (2.111-3) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up python3-mypy-extensions (0.4.1-1) ... Setting up python3-olefile (0.46-1) ... Setting up libauthen-sasl-perl (2.1600-1) ... Setting up libfile-slurp-tiny-perl (0.004-1) ... Setting up libipc-sharelite-perl (0.17-4+b3) ... Setting up libconvert-binhex-perl (1.125-1) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libyaml-libyaml-perl (0.76+repack-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up libpoppler82:amd64 (0.71.0-5) ... Setting up perl-doc (5.28.1-6+deb10u1) ... Setting up libmldbm-perl (2.05-2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libsvg-perl (2.84-1) ... Setting up libnet-http-perl (6.18-1) ... Setting up libbsd-resource-perl (1.2911-1+b3) ... Setting up python3-yaml (3.13-2) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libdbd-pg-perl (3.7.4-3) ... Setting up fsa (1.15.9+dfsg-4) ... Setting up libexception-class-perl (1.44-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libgraph-perl (1:0.9704-1) ... Setting up libibverbs-dev:amd64 (22.1-1) ... Setting up apache2-bin (2.4.38-3+deb10u8) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up python3-networkx (2.2-1) ... Setting up libyaml-perl (1.27-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libspreadsheet-writeexcel-perl (2.40-1) ... Setting up python3-bs4 (4.7.1-1) ... Setting up libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Setting up python3-prov (1.5.2-1) ... Setting up samtools (1.9-4) ... Setting up libbit-vector-perl (7.4-1+b5) ... Setting up libfreezethaw-perl (0.5001-2) ... Setting up liberror-perl (0.17027-2) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up libdigest-perl-md5-perl (1.9-1) ... Setting up libltdl-dev:amd64 (2.4.6-9) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libreadonly-perl (2.050-1) ... Setting up libunicode-map-perl (0.112-12+b1) ... Setting up python3-chardet (3.0.4-3) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up python3-requests (2.21.0-1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up libdbd-mysql-perl:amd64 (4.050-2) ... Setting up python3-mypy (0.670-2) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libole-storage-lite-perl (0.19-2+deb10u1) ... Setting up libspreadsheet-parseexcel-perl (0.6500-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libtree-dagnode-perl (1.31-1) ... Setting up g++ (4:8.3.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libdata-stag-perl (0.14-2) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up emboss-lib (6.6.0+dfsg-7+b1) ... Setting up libdbd-sqlite3-perl:amd64 (1.62-3) ... Setting up libhwloc-dev:amd64 (1.11.12-3) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up python3-cachecontrol (0.11.7-1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... Setting up libcupsfilters1:amd64 (1.21.6-5) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libhtml-form-perl (6.03-1) ... Setting up libbio-perl-run-perl (1.7.2-4) ... Setting up ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Setting up libfabric1 (1.6.2-3) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libstatistics-descriptive-perl (3.0702-1) ... Setting up python3-scipy (1.1.0-7) ... Setting up emboss (6.6.0+dfsg-7+b1) ... Setting up libdate-calc-perl (6.4-1) ... Setting up libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Setting up libcache-cache-perl (1.08-2) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libdate-calc-xs-perl (6.4-1+b4) ... Setting up libcoarrays-dev:amd64 (2.4.0-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libbio-asn1-entrezgene-perl (1.720-2) ... Setting up python3-schema-salad (3.0.20181206233650-2) ... Setting up libtest-differences-perl (0.65-1) ... Setting up hyphy-mpi (2.3.14+dfsg-1) ... Setting up libhtml-format-perl (2.12-1) ... Setting up cwltool (1.0.20181217162649+dfsg-10) ... Setting up ghostscript (9.27~dfsg-2+deb10u5) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgd-perl (2.71-2) ... Setting up libcaf-openmpi-3:amd64 (2.4.0-2) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up blast2 (1:2.8.1-1+deb10u1) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up libxml-filter-buffertext-perl (1.01-6) ... Setting up libace-perl (1.92-8+b1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhtml-tableextract-perl (2.15-1) ... Setting up libhttp-daemon-perl (6.01-3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20180621-2) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up libxml-sax-writer-perl (0.57-1) ... Setting up libsvg-graph-perl (0.02-3) ... Setting up libtest-most-perl (0.35-1) ... Setting up libcgi-fast-perl (1:2.13-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Setting up libmime-tools-perl (5.509-1) ... Setting up libarray-compare-perl (3.0.2-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libxml-libxslt-perl (1.96-1+b1) ... Setting up libopenmpi-dev:amd64 (3.1.3-11) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up bioperl (1.7.2-3) ... Setting up bioperl-run (1.7.2-4) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up odbcinst (2.3.6-0.1) ... Setting up libwww-perl (6.36-2) ... Setting up libapache2-mod-perl2 (2.0.10-3) ... Setting up libapache2-reload-perl (0.13-2) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up odbcinst1debian2:amd64 (2.3.6-0.1) ... Setting up libgdal20 (2.4.0+dfsg-1+b1) ... Setting up python3-gdal (2.4.0+dfsg-1+b1) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libruby2.5:amd64 (2.5.5-3+deb10u4) ... Setting up libxml-twig-perl (1:3.50-1.1) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-perl (0.08-3) ... Setting up libsoap-lite-perl (1.27-1) ... Setting up libgraphviz-perl (2.22-1) ... Setting up ruby2.5 (2.5.5-3+deb10u4) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libxml-dom-xpath-perl (0.14-3) ... Setting up ruby (1:2.5.1) ... Setting up libxmlrpc-lite-perl (0.717-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for menu (2.1.47+b1) ... Setting up blends-common (0.7.2) ... Setting up med-config (3.3) ... Adding group `med' (GID 153) ... Done. Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', '-y', 'install', 'libbio-asn1-entrezgene-perl=1.720-2'] 1m36.8s INFO: Running scripts post_install 1m36.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_install_exceptions'] 1m36.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_install_exceptions'] 1m36.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 1m39.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 1m42.8s DEBUG: No broken symlinks as far as we can find. 1m42.9s INFO: /bin converted to /usr/bin by /usr merge 1m42.9s INFO: /lib converted to /usr/lib by /usr merge 1m42.9s INFO: /lib/init converted to /usr/lib/init by /usr merge 1m42.9s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 1m42.9s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 1m42.9s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 1m42.9s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 1m42.9s INFO: /lib/systemd/system/multi-user.target.wants converted to /usr/lib/systemd/system/multi-user.target.wants by /usr merge 1m42.9s INFO: /lib/systemd/system/sockets.target.wants converted to /usr/lib/systemd/system/sockets.target.wants by /usr merge 1m42.9s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 1m42.9s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 1m42.9s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 1m42.9s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 1m42.9s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 1m42.9s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 1m42.9s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 1m42.9s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 1m42.9s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 1m42.9s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 1m42.9s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 1m42.9s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 1m42.9s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 1m42.9s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 1m42.9s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 1m42.9s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 1m42.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m42.9s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 1m42.9s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m42.9s INFO: /sbin converted to /usr/sbin by /usr merge 1m45.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphe_acyes', '-ac', '--ignore-obsolete'] 1m51.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmphe_acyes', '-ac', '--ignore-obsolete'] 1m51.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m51.4s DUMP: 0.15.6 1m51.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m51.4s INFO: Running adequate version 0.15.6 now. 1m51.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'libbio-asn1-entrezgene-perl'] 1m51.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'libbio-asn1-entrezgene-perl'] 1m51.5s INFO: Running scripts pre_remove 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_exceptions'] 2m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/pre_remove_exceptions'] 2m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m11.7s DUMP: install ok installed adduser adduser 3.118 install ok installed amap-align amap-align 2.2+git20080214.600fc29+dfsg-1 install ok installed apache2-bin apache2-bin 2.4.38-3+deb10u8 install ok installed apt apt 1.8.2.3 install ok installed autoconf autoconf 2.69-11 install ok installed automake automake 1:1.16.1-4 install ok installed autotools-dev autotools-dev 20180224.1 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bedtools bedtools 2.27.1+dfsg-4 install ok installed binutils binutils 2.31.1-16 install ok installed binutils-common:amd64 binutils-common 2.31.1-16 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.31.1-16 install ok installed bioperl bioperl 1.7.2-3 install ok installed bioperl-run bioperl-run 1.7.2-4 install ok installed blast2 blast2 1:2.8.1-1+deb10u1 install ok installed blends-common blends-common 0.7.2 install ok installed bowtie bowtie 1.2.2+dfsg-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bwa bwa 0.7.17-3 install ok installed bzip2 bzip2 1.0.6-9.2~deb10u1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed clustalo clustalo 1.2.4-2 install ok installed clustalw clustalw 2.1+lgpl-6 install ok installed coreutils coreutils 8.30-3 install ok installed cpp cpp 4:8.3.0-1 install ok installed cpp-8 cpp-8 8.3.0-6 install ok installed cwltool cwltool 1.0.20181217162649+dfsg-10 install ok installed dash dash 0.5.10.2-5 install ok installed dbus dbus 1.12.20-0+deb10u1 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed dialign dialign 2.2.1-10 install ok installed dialign-tx dialign-tx 1.0.2-12 install ok installed dialign-tx-data dialign-tx-data 1.0.2-12 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed emboss emboss 6.6.0+dfsg-7+b1 install ok installed emboss-data emboss-data 6.6.0+dfsg-7 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-7+b1 install ok installed exonerate exonerate 2.4.0-4 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed file file 1:5.35-4+deb10u2 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-droid-fallback fonts-droid-fallback 1:6.0.1r16-1.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-1 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fonts-liberation fonts-liberation 1:1.07.4-9 install ok installed fonts-noto-mono fonts-noto-mono 20181227-1 install ok installed fsa fsa 1.15.9+dfsg-4 install ok installed g++ g++ 4:8.3.0-1 install ok installed g++-8 g++-8 8.3.0-6 install ok installed gawk gawk 1:4.2.1+dfsg-1 install ok installed gcc gcc 4:8.3.0-1 install ok installed gcc-8 gcc-8 8.3.0-6 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gdal-data gdal-data 2.4.0+dfsg-1 install ok installed gfortran gfortran 4:8.3.0-1 install ok installed gfortran-8 gfortran-8 8.3.0-6 install ok installed ghostscript ghostscript 9.27~dfsg-2+deb10u5 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed gsfonts gsfonts 1:8.11+urwcyr1.0.7~pre44-4.4 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hmmer hmmer 3.2.1+dfsg-1 install ok installed hostname hostname 3.21 install ok installed hyphy-common hyphy-common 2.3.14+dfsg-1 install ok installed hyphy-mpi hyphy-mpi 2.3.14+dfsg-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 22.1-1 install ok installed infernal infernal 1.1.2-2 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed javascript-common javascript-common 11 install ok installed kalign kalign 1:2.03+20110620-5 install ok installed krb5-locales krb5-locales 1.17-3+deb10u4 install ok installed libace-perl libace-perl 1.92-8+b1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-2 install ok installed libalgorithm-diff-xs-perl libalgorithm-diff-xs-perl 0.04-5+b1 install ok installed libalgorithm-munkres-perl libalgorithm-munkres-perl 0.08-3 install ok installed libapache-dbi-perl libapache-dbi-perl 1.12-2 install ok installed libapache2-mod-perl2 libapache2-mod-perl2 2.0.10-3 install ok installed libapache2-reload-perl libapache2-reload-perl 0.13-2 install ok installed libapparmor1:amd64 libapparmor1 2.13.2-10 install ok installed libapr1:amd64 libapr1 1.6.5-1+b1 install ok installed libaprutil1:amd64 libaprutil1 1.6.1-4 install ok installed libaprutil1-dbd-sqlite3:amd64 libaprutil1-dbd-sqlite3 1.6.1-4 install ok installed libaprutil1-ldap:amd64 libaprutil1-ldap 1.6.1-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libargtable2-0 libargtable2-0 13-1 install ok installed libarmadillo9 libarmadillo9 1:9.200.7+dfsg-1 install ok installed libarpack2:amd64 libarpack2 3.7.0-2 install ok installed libarray-compare-perl libarray-compare-perl 3.0.2-1 install ok installed libasan5:amd64 libasan5 8.3.0-6 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libauthen-sasl-perl libauthen-sasl-perl 2.1600-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.7-4+deb10u1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.7-4+deb10u1 install ok installed libavahi-common3:amd64 libavahi-common3 0.7-4+deb10u1 install ok 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1.32-1 install ok installed libclass-method-modifiers-perl libclass-method-modifiers-perl 2.12-1 install ok installed libclass-xsaccessor-perl libclass-xsaccessor-perl 1.19-3+b2 install ok installed libclone-perl libclone-perl 0.41-1+b1 install ok installed libcoarrays-dev:amd64 libcoarrays-dev 2.4.0-2 install ok installed libcoarrays-openmpi-dev:amd64 libcoarrays-openmpi-dev 2.4.0-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libconvert-binary-c-perl libconvert-binary-c-perl 0.78-1+b4 install ok installed libconvert-binhex-perl libconvert-binhex-perl 1.125-1 install ok installed libcrypt-rc4-perl libcrypt-rc4-perl 2.02-3 install ok installed libcups2:amd64 libcups2 2.2.10-6+deb10u6 install ok installed libcupsfilters1:amd64 libcupsfilters1 1.21.6-5 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.10-6+deb10u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdap25:amd64 libdap25 3.20.3-1 install ok installed libdapclient6v5:amd64 libdapclient6v5 3.20.3-1 install ok installed libdapserver7v5:amd64 libdapserver7v5 3.20.3-1 install ok installed libdata-dump-perl libdata-dump-perl 1.23-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdate-calc-perl libdate-calc-perl 6.4-1 install ok installed libdate-calc-xs-perl libdate-calc-xs-perl 6.4-1+b4 install ok installed libdate-manip-perl libdate-manip-perl 6.76-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbd-mysql-perl:amd64 libdbd-mysql-perl 4.050-2 install ok installed libdbd-pg-perl libdbd-pg-perl 3.7.4-3 install ok installed libdbd-sqlite3-perl:amd64 libdbd-sqlite3-perl 1.62-3 install ok installed libdbi-perl:amd64 libdbi-perl 1.642-1+deb10u2 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.20-0+deb10u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0:amd64 libdeflate0 1.2-1 install ok installed libdevel-callchecker-perl libdevel-callchecker-perl 0.008-1 install ok installed libdevel-globaldestruction-perl libdevel-globaldestruction-perl 0.14-1 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0300-1 install ok installed libdevel-symdump-perl libdevel-symdump-perl 2.18-3 install ok installed libdigest-perl-md5-perl libdigest-perl-md5-perl 1.9-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libepsilon1:amd64 libepsilon1 0.9.2+dfsg-4 install ok installed liberror-perl liberror-perl 0.17027-2 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 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libfreetype6 2.9.1-3+deb10u3 install ok installed libfreexl1:amd64 libfreexl1 1.0.5-3 install ok installed libfreezethaw-perl libfreezethaw-perl 0.5001-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libfyba0:amd64 libfyba0 4.1.1-6 install ok installed libgcc-8-dev:amd64 libgcc-8-dev 8.3.0-6 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgd-perl libgd-perl 2.71-2 install ok installed libgd3:amd64 libgd3 2.2.5-5.2 install ok installed libgdal20 libgdal20 2.4.0+dfsg-1+b1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgeos-3.7.1:amd64 libgeos-3.7.1 3.7.1-1 install ok installed libgeos-c1v5:amd64 libgeos-c1v5 3.7.1-1 install ok installed libgeotiff2:amd64 libgeotiff2 1.4.3-1 install ok installed libgfortran-8-dev:amd64 libgfortran-8-dev 8.3.0-6 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgif7:amd64 libgif7 5.1.4-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglib2.0-data libglib2.0-data 2.58.3-2+deb10u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgpm2:amd64 libgpm2 1.20.7-5 install ok installed libgraph-perl libgraph-perl 1:0.9704-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgs9:amd64 libgs9 9.27~dfsg-2+deb10u5 install ok installed libgs9-common libgs9-common 9.27~dfsg-2+deb10u5 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgts-bin libgts-bin 0.7.6+darcs121130-4 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2.13-4 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1 install ok installed libhtml-form-perl libhtml-form-perl 6.03-1 install ok installed libhtml-format-perl libhtml-format-perl 2.12-1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tableextract-perl libhtml-tableextract-perl 2.15-1 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhts2:amd64 libhts2 1.9-12~deb10u1 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-daemon-perl libhttp-daemon-perl 6.01-3 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libhwloc-dev:amd64 libhwloc-dev 1.11.12-3 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs-dev:amd64 libibverbs-dev 22.1-1 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-14 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libimport-into-perl libimport-into-perl 1.002005-1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b5 install ok installed libio-sessiondata-perl libio-sessiondata-perl 1.03-1 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libio-stringy-perl libio-stringy-perl 2.111-3 install ok installed libipc-run-perl libipc-run-perl 20180523.0-1 install ok installed libipc-sharelite-perl libipc-sharelite-perl 0.17-4+b3 install ok installed libisl19:amd64 libisl19 0.20-2 install ok installed libitm1:amd64 libitm1 8.3.0-6 install ok installed libjansson4:amd64 libjansson4 2.12-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.16-1+deb10u1 install ok installed libjcode-pm-perl libjcode-pm-perl 2.06-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjson-c3:amd64 libjson-c3 0.12.1+ds-2+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkmlbase1:amd64 libkmlbase1 1.3.0-7 install ok installed libkmlconvenience1:amd64 libkmlconvenience1 1.3.0-7 install ok installed libkmldom1:amd64 libkmldom1 1.3.0-7 install ok installed libkmlengine1:amd64 libkmlengine1 1.3.0-7 install ok installed libkmlregionator1:amd64 libkmlregionator1 1.3.0-7 install ok installed libkmlxsd1:amd64 libkmlxsd1 1.3.0-7 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b4 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblsan0:amd64 liblsan0 8.3.0-6 install ok installed libltdl-dev:amd64 libltdl-dev 2.4.6-9 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblua5.2-0:amd64 liblua5.2-0 5.2.4-1.1+b2 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmagic-mgc libmagic-mgc 1:5.35-4+deb10u2 install ok installed libmagic1:amd64 libmagic1 1:5.35-4+deb10u2 install ok installed libmailtools-perl libmailtools-perl 2.18-1 install ok installed libmariadb3:amd64 libmariadb3 1:10.3.34-0+deb10u1 install ok installed libmath-derivative-perl libmath-derivative-perl 1.01-1 install ok installed libmath-spline-perl libmath-spline-perl 0.02-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmime-tools-perl libmime-tools-perl 5.509-1 install ok installed libminizip1:amd64 libminizip1 1.1-8+b1 install ok installed libmldbm-perl libmldbm-perl 2.05-2 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-1 install ok installed libmoo-perl libmoo-perl 2.003004-2 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpc3:amd64 libmpc3 1.1.0-1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libmpfr6:amd64 libmpfr6 4.0.2-1 install ok installed libmpx2:amd64 libmpx2 8.3.0-6 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnet-http-perl libnet-http-perl 6.18-1 install ok installed libnet-smtp-ssl-perl libnet-smtp-ssl-perl 1.04-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.85-2+deb10u1 install ok installed libnetcdf13:amd64 libnetcdf13 1:4.6.2-1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-3-dev:amd64 libnl-3-dev 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnl-route-3-dev:amd64 libnl-route-3-dev 3.4.0-1 install ok installed libnode64:amd64 libnode64 10.24.0~dfsg-1~deb10u1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u5 install ok installed libnuma-dev:amd64 libnuma-dev 2.0.12-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libodbc1:amd64 libodbc1 2.3.6-0.1 install ok installed libogdi3.2 libogdi3.2 3.2.1+ds-4 install ok installed libole-storage-lite-perl libole-storage-lite-perl 0.19-2+deb10u1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-2+deb10u2 install ok installed libopenmpi-dev:amd64 libopenmpi-dev 3.1.3-11 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed libossp-uuid-perl libossp-uuid-perl 1.6.2-1.5+b7 install ok installed libossp-uuid16:amd64 libossp-uuid16 1.6.2-1.5+b7 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libparams-classify-perl libparams-classify-perl 0.015-1+b1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpoppler82:amd64 libpoppler82 0.71.0-5 install ok installed libpopt0:amd64 libpopt0 1.16-12 install ok installed libpostscript-perl libpostscript-perl 0.06-3 install ok installed libpq5:amd64 libpq5 11.16-0+deb10u1 install ok installed libproj13:amd64 libproj13 5.2.0-1 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libqhull7:amd64 libqhull7 2015.2-4 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libreadonly-perl libreadonly-perl 2.050-1 install ok installed libref-util-perl libref-util-perl 0.204-1 install ok installed libref-util-xs-perl libref-util-xs-perl 0.117-1+b1 install ok installed librole-tiny-perl librole-tiny-perl 2.000006-1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libruby2.5:amd64 libruby2.5 2.5.5-3+deb10u4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules:amd64 libsasl2-modules 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libset-scalar-perl libset-scalar-perl 1.29-2 install ok installed libsigsegv2:amd64 libsigsegv2 2.12-2 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsoap-lite-perl libsoap-lite-perl 1.27-1 install ok installed libsort-naturally-perl libsort-naturally-perl 1.03-2 install ok installed libspatialite7:amd64 libspatialite7 4.3.0a-5+b2 install ok installed libspreadsheet-parseexcel-perl libspreadsheet-parseexcel-perl 0.6500-1 install ok installed libspreadsheet-writeexcel-perl libspreadsheet-writeexcel-perl 2.40-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstatistics-descriptive-perl libstatistics-descriptive-perl 3.0702-1 install ok installed libstdc++-8-dev:amd64 libstdc++-8-dev 8.3.0-6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libstrictures-perl libstrictures-perl 2.000005-1 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-1 install ok installed libsub-name-perl libsub-name-perl 0.21-1+b3 install ok installed libsub-quote-perl libsub-quote-perl 2.005001-1 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1 install ok installed libsuperlu5:amd64 libsuperlu5 5.2.1+dfsg1-4 install ok installed libsvg-graph-perl libsvg-graph-perl 0.02-3 install ok installed libsvg-perl libsvg-perl 2.84-1 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtask-weaken-perl libtask-weaken-perl 1.06-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtbb2:amd64 libtbb2 2018~U6-4 install ok installed libtest-deep-perl libtest-deep-perl 1.128-1 install ok installed libtest-differences-perl libtest-differences-perl 0.65-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5+b7 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtie-ixhash-perl libtie-ixhash-perl 1.23-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtool libtool 2.4.6-9 install ok installed libtree-dagnode-perl libtree-dagnode-perl 1.31-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libtsan0:amd64 libtsan0 8.3.0-6 install ok installed libtype-tiny-perl libtype-tiny-perl 1.004004-1 install ok installed libtype-tiny-xs-perl libtype-tiny-xs-perl 0.014-1+b1 install ok installed libubsan1:amd64 libubsan1 8.3.0-6 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunicode-map-perl libunicode-map-perl 0.112-12+b1 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed liburiparser1:amd64 liburiparser1 0.9.1-1+deb10u1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libuv1:amd64 libuv1 1.24.1-1+deb10u1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u1 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u1 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxerces-c3.2:amd64 libxerces-c3.2 3.2.2+debian-1+deb10u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxml-dom-perl libxml-dom-perl 1.44-2 install ok installed libxml-dom-xpath-perl libxml-dom-xpath-perl 0.14-3 install ok installed libxml-filter-buffertext-perl libxml-filter-buffertext-perl 1.01-6 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0134+dfsg-1 install ok installed libxml-libxslt-perl libxml-libxslt-perl 1.96-1+b1 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-perl libxml-perl 0.08-3 install ok installed libxml-regexp-perl libxml-regexp-perl 0.04-1 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-1 install ok installed libxml-sax-expat-perl libxml-sax-expat-perl 0.51-1 install ok installed libxml-sax-perl libxml-sax-perl 1.00+dfsg-1 install ok installed libxml-sax-writer-perl libxml-sax-writer-perl 0.57-1 install ok installed libxml-simple-perl libxml-simple-perl 2.25-1 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1.1 install ok installed libxml-writer-perl libxml-writer-perl 0.625-1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxml-xpathengine-perl libxml-xpathengine-perl 0.14-1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libxmlrpc-lite-perl libxmlrpc-lite-perl 0.717-2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxmuu1:amd64 libxmuu1 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.32-2.2~deb10u1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libyaml-libyaml-perl libyaml-libyaml-perl 0.76+repack-1 install ok installed libyaml-perl libyaml-perl 1.27-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.249-2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed lynx lynx 2.8.9rel.1-3+deb10u1 install ok installed lynx-common lynx-common 2.8.9rel.1-3+deb10u1 install ok installed m4 m4 1.4.18-2 install ok installed mafft mafft 7.407-2 install ok installed manpages manpages 4.16-2 install ok installed manpages-dev manpages-dev 4.16-2 install ok installed maq maq 0.7.1-8 install ok installed mariadb-common mariadb-common 1:10.3.34-0+deb10u1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed med-config med-config 3.3 install ok installed menu menu 2.1.47+b1 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed mummer mummer 3.23+dfsg-4 install ok installed muscle muscle 1:3.8.1551-2 install ok installed mustang mustang 3.2.3-3 install ok installed mysql-common mysql-common 5.8+1.0.5 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncoils ncoils 2002-7 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed netbase netbase 5.6 install ok installed nodejs nodejs 10.24.0~dfsg-1~deb10u1 install ok installed nodejs-doc nodejs-doc 10.24.0~dfsg-1~deb10u1 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed odbcinst odbcinst 2.3.6-0.1 install ok installed odbcinst1debian2:amd64 odbcinst1debian2 2.3.6-0.1 install ok installed openmpi-bin openmpi-bin 3.1.3-11 install ok installed openmpi-common openmpi-common 3.1.3-11 install ok installed openssh-client openssh-client 1:7.9p1-10+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-doc perl-doc 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed perl-tk perl-tk 1:804.033-2+b3 install ok installed phylip phylip 1:3.697+dfsg-1 install ok installed phyml phyml 3:3.3.20180621-2 install ok installed poa poa 2.0+20060928-7 install ok installed poppler-data poppler-data 0.4.9-2 install ok installed prank prank 0.0.170427+dfsg-2 install ok installed primer3 primer3 2.4.0-2 install ok installed probalign probalign 1.4-8 install ok installed probcons probcons 1.12-12 install ok installed proda proda 1.0-12 install ok installed proj-bin proj-bin 5.2.0-1 install ok installed proj-data proj-data 5.2.0-1 install ok installed publicsuffix publicsuffix 20220811.1734-0+deb10u1 install ok installed python python 2.7.16-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-bs4 python3-bs4 4.7.1-1 install ok installed python3-cachecontrol python3-cachecontrol 0.11.7-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-gdal python3-gdal 2.4.0+dfsg-1+b1 install ok installed python3-html5lib python3-html5lib 1.0.1-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-isodate python3-isodate 0.6.0-1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-2 install ok installed python3-lxml:amd64 python3-lxml 4.3.2-1+deb10u4 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-mistune python3-mistune 0.8.4-1 install ok installed python3-mypy python3-mypy 0.670-2 install ok installed python3-mypy-extensions python3-mypy-extensions 0.4.1-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-olefile python3-olefile 0.46-1 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-prov python3-prov 1.5.2-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-rdflib python3-rdflib 4.2.2-2 install ok installed python3-rdflib-jsonld python3-rdflib-jsonld 0.4.0-4 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-ruamel.yaml python3-ruamel.yaml 0.15.34-1+b1 install ok installed python3-schema-salad python3-schema-salad 3.0.20181206233650-2 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-shellescape python3-shellescape 3.4.1-3 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-soupsieve python3-soupsieve 1.8+dfsg-1 install ok installed python3-sparqlwrapper python3-sparqlwrapper 1.8.2-0.1 install ok installed python3-typed-ast python3-typed-ast 1.3.1-1 install ok installed python3-typing-extensions python3-typing-extensions 3.7.2-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-webencodings python3-webencodings 0.5.1-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed rake rake 12.3.1-3+deb10u1 install ok installed raxml raxml 8.2.12+dfsg-1 install ok installed readline-common readline-common 7.0-5 install ok installed ruby ruby 1:2.5.1 install ok installed ruby-did-you-mean ruby-did-you-mean 1.2.1-1 install ok installed ruby-minitest ruby-minitest 5.11.3-1 install ok installed ruby-net-telnet ruby-net-telnet 0.1.1-2 install ok installed ruby-power-assert ruby-power-assert 1.1.1-1 install ok installed ruby-test-unit ruby-test-unit 3.2.8-1 install ok installed ruby-xmlrpc ruby-xmlrpc 0.3.0-2 install ok installed ruby2.5 ruby2.5 2.5.5-3+deb10u4 install ok installed rubygems-integration rubygems-integration 1.11+deb10u1 install ok installed samtools samtools 1.9-4 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed shared-mime-info shared-mime-info 1.10-1 install ok installed sim4 sim4 0.0.20121010-5 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed t-coffee t-coffee 12.00.7fb08c2-4 install ok installed tar tar 1.30+dfsg-6 install ok installed tigr-glimmer tigr-glimmer 3.02b-2 install ok installed tm-align tm-align 20170708+dfsg-2 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed wise wise 2.4.1-21 install ok installed wise-data wise-data 2.4.1-21 install ok installed x11-common x11-common 1:7.7+19 install ok installed xauth xauth 1:1.0.10-1 install ok installed xdg-user-dirs xdg-user-dirs 0.17-2 install ok installed xz-utils xz-utils 5.2.4-1+deb10u1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 2m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'remove', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++-', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-globaldestruction-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'perl', 'perl-doc', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'proj-bin', 'proj-data', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.5', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip', 'libbio-asn1-entrezgene-perl'] 2m23.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: amap-align apache2-bin autoconf automake autotools-dev bedtools binutils binutils-common binutils-x86-64-linux-gnu bioperl bioperl-run blast2 blends-common bowtie bwa bzip2 ca-certificates clustalo clustalw cpp cpp-8 cwltool dbus dialign dialign-tx dialign-tx-data emboss emboss-data emboss-lib exonerate file fontconfig fontconfig-config fonts-dejavu-core fonts-droid-fallback fonts-glyphicons-halflings fonts-lato fonts-liberation fonts-noto-mono fsa g++ g++-8 gawk gcc gcc-8 gdal-data gfortran gfortran-8 ghostscript graphviz gsfonts hmmer hyphy-common hyphy-mpi ibverbs-providers infernal javascript-common kalign krb5-locales libace-perl libaec0 libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libapache2-mod-perl2 libapache2-reload-perl libapparmor1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libargtable2-0 libarmadillo9 libarpack2 libarray-compare-perl libasan5 libatomic1 libauthen-sasl-perl libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbinutils libbio-asn1-entrezgene-perl libbio-perl-perl libbio-perl-run-perl libbit-vector-perl libblas3 libbrotli1 libbsd-resource-perl libbsd0 libc-ares2 libc-dev-bin libc6-dev libcache-cache-perl libcaf-openmpi-3 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcc1-0 libcdt5 libcgi-fast-perl libcgi-pm-perl libcgraph6 libcharls2 libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libcoarrays-dev libcoarrays-openmpi-dev libconvert-binary-c-perl libconvert-binhex-perl libcrypt-rc4-perl libcups2 libcupsfilters1 libcupsimage2 libcurl3-gnutls libcurl4 libdap25 libdapclient6v5 libdapserver7v5 libdata-dump-perl libdata-stag-perl libdate-calc-perl libdate-calc-xs-perl libdate-manip-perl libdatrie1 libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdbus-1-3 libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-stacktrace-perl libdevel-symdump-perl libdigest-perl-md5-perl libdivsufsort3 libdynaloader-functions-perl libedit2 libencode-locale-perl libepsilon1 liberror-perl libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexception-class-perl libexpat1 libexporter-tiny-perl libfabric1 libfcgi-perl libfile-listing-perl libfile-slurp-tiny-perl libfont-afm-perl libfontconfig1 libfreetype6 libfreexl1 libfreezethaw-perl libfribidi0 libfyba0 libgcc-8-dev libgd-perl libgd3 libgdal20 libgdbm-compat4 libgdbm6 libgeos-3.7.1 libgeos-c1v5 libgeotiff2 libgfortran-8-dev libgfortran5 libgif7 libglib2.0-0 libglib2.0-data libgomp1 libgpm2 libgraph-perl libgraphite2-3 libgraphviz-perl libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 libharfbuzz0b libhdf4-0-alt libhdf5-103 libhpdf-2.3.0 libhtml-form-perl libhtml-format-perl libhtml-parser-perl libhtml-tableextract-perl libhtml-tagset-perl libhtml-tree-perl libhts2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice6 libicu63 libidn11 libijs-0.35 libimagequant0 libimport-into-perl libio-html-perl libio-pty-perl libio-sessiondata-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libipc-sharelite-perl libisl19 libitm1 libjansson4 libjbig0 libjbig2dec0 libjcode-pm-perl libjpeg62-turbo libjs-bootstrap libjs-jquery libjson-c3 libk5crypto3 libkeyutils1 libkmlbase1 libkmlconvenience1 libkmldom1 libkmlengine1 libkmlregionator1 libkmlxsd1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblist-moreutils-perl liblmdb0 liblsan0 libltdl-dev libltdl7 liblua5.2-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libmailtools-perl libmariadb3 libmath-derivative-perl libmath-spline-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libmime-tools-perl libminizip1 libmldbm-perl libmodule-runtime-perl libmoo-perl libmpc3 libmpdec2 libmpfr6 libmpx2 libncurses6 libnet-http-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnetcdf13 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnode64 libnspr4 libnss3 libnuma-dev libnuma1 libodbc1 libogdi3.2 libole-storage-lite-perl libopenjp2-7 libopenmpi-dev libopenmpi3 libossp-uuid-perl libossp-uuid16 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpciaccess0 libperl5.28 libpixman-1-0 libpmix2 libpng16-16 libpoppler82 libpopt0 libpostscript-perl libpq5 libproj13 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libqhull7 libquadmath0 librdmacm1 libreadline7 libreadonly-perl libref-util-perl libref-util-xs-perl librole-tiny-perl librtmp1 libruby2.5 libsasl2-2 libsasl2-modules libsasl2-modules-db libset-scalar-perl libsigsegv2 libsm6 libsoap-lite-perl libsort-naturally-perl libspatialite7 libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsqlite3-0 libssh2-1 libssl1.1 libstatistics-descriptive-perl libstdc++-8-dev libstrictures-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsuperlu5 libsvg-graph-perl libsvg-perl libsz2 libtask-weaken-perl libtbb2 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtext-iconv-perl libthai-data libthai0 libtie-ixhash-perl libtiff5 libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libtsan0 libtype-tiny-perl libtype-tiny-xs-perl libubsan1 libunicode-map-perl liburi-perl liburiparser1 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxerces-c3.2 libxext6 libxft2 libxml-dom-perl libxml-dom-xpath-perl libxml-filter-buffertext-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-expat-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-xpath-perl libxml-xpathengine-perl libxml2 libxmlrpc-lite-perl libxmu6 libxmuu1 libxpm4 libxrender1 libxslt1.1 libxt6 libyaml-0-2 libyaml-libyaml-perl libyaml-perl linux-libc-dev lsb-base lynx lynx-common m4 mafft manpages manpages-dev maq mariadb-common med-config menu mime-support mummer muscle mustang mysql-common ncbi-blast+ ncbi-blast+-legacy ncbi-data ncoils netbase nodejs nodejs-doc ocl-icd-libopencl1 odbcinst odbcinst1debian2 openmpi-bin openmpi-common openssh-client openssl perl perl-doc perl-modules-5.28 perl-openssl-defaults perl-tk phylip phyml poa poppler-data prank primer3 probalign probcons proda proj-bin proj-data publicsuffix python python-minimal python2 python2-minimal python2.7 python2.7-minimal python3 python3-bs4 python3-cachecontrol python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-gdal python3-html5lib python3-idna python3-isodate python3-lib2to3 python3-lockfile python3-lxml python3-minimal python3-mistune python3-mypy python3-mypy-extensions python3-networkx python3-numpy python3-olefile python3-pil python3-pkg-resources python3-prov python3-psutil python3-pyparsing python3-rdflib python3-rdflib-jsonld python3-requests python3-ruamel.yaml python3-schema-salad python3-scipy python3-shellescape python3-six python3-soupsieve python3-sparqlwrapper python3-typed-ast python3-typing-extensions python3-urllib3 python3-webencodings python3-yaml python3.7 python3.7-minimal rake raxml readline-common ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby-xmlrpc ruby2.5 rubygems-integration samtools sensible-utils shared-mime-info sim4 t-coffee tigr-glimmer tm-align ucf unzip wise wise-data x11-common xauth xdg-user-dirs xz-utils zip 0 upgraded, 0 newly installed, 559 to remove and 0 not upgraded. After this operation, 1571 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 43446 files and directories currently installed.) Removing amap-align (2.2+git20080214.600fc29+dfsg-1) ... Removing libapache2-reload-perl (0.13-2) ... Removing libapache-dbi-perl (1.12-2) ... Removing libapache2-mod-perl2 (2.0.10-3) ... Removing apache2-bin (2.4.38-3+deb10u8) ... Removing libopenmpi-dev:amd64 (3.1.3-11) ... Removing libhwloc-dev:amd64 (1.11.12-3) ... Removing libltdl-dev:amd64 (2.4.6-9) ... Removing automake (1:1.16.1-4) ... Removing autoconf (2.69-11) ... Removing libtool (2.4.6-9) ... Removing autotools-dev (20180224.1) ... Removing bedtools (2.27.1+dfsg-4) ... Removing g++ (4:8.3.0-1) ... Removing libcoarrays-openmpi-dev:amd64 (2.4.0-2) ... Removing libcoarrays-dev:amd64 (2.4.0-2) ... Removing gfortran (4:8.3.0-1) ... Removing gcc (4:8.3.0-1) ... Removing bioperl-run (1.7.2-4) ... Removing bioperl (1.7.2-3) ... Removing blast2 (1:2.8.1-1+deb10u1) ... Removing med-config (3.3) ... Removing blends-common (0.7.2) ... Removing bowtie (1.2.2+dfsg-4) ... Removing bwa (0.7.17-3) ... Removing bzip2 (1.0.6-9.2~deb10u1) ... Removing cwltool (1.0.20181217162649+dfsg-10) ... Removing python3-schema-salad (3.0.20181206233650-2) ... Removing clustalo (1.2.4-2) ... Removing clustalw (2.1+lgpl-6) ... Removing cpp (4:8.3.0-1) ... Removing dbus (1.12.20-0+deb10u1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing dialign (2.2.1-10) ... Removing dialign-tx (1.0.2-12) ... Removing dialign-tx-data (1.0.2-12) ... Removing emboss (6.6.0+dfsg-7+b1) ... Removing emboss-data (6.6.0+dfsg-7) ... Removing emboss-lib (6.6.0+dfsg-7+b1) ... Removing fsa (1.15.9+dfsg-4) ... Removing exonerate (2.4.0-4) ... Removing file (1:5.35-4+deb10u2) ... Removing libgraphviz-perl (2.22-1) ... Removing graphviz (2.40.1-6+deb10u1) ... Removing libgvc6 (2.40.1-6+deb10u1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing perl-tk (1:804.033-2+b3) ... Removing libxft2:amd64 (2.3.2-2) ... Removing python3-gdal (2.4.0+dfsg-1+b1) ... Removing libgdal20 (2.4.0+dfsg-1+b1) ... Removing libpoppler82:amd64 (0.71.0-5) ... Removing fonts-dejavu-core (2.37-1) ... Removing fonts-droid-fallback (1:6.0.1r16-1.1) ... Removing libjs-bootstrap (3.4.1+dfsg-1) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing fonts-lato (2.0-2) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing fonts-noto-mono (20181227-1) ... Removing g++-8 (8.3.0-6) ... Removing mummer (3.23+dfsg-4) ... Removing gawk (1:4.2.1+dfsg-1) ... update-alternatives: using /usr/bin/mawk to provide /usr/bin/awk (awk) in auto mode Removing gdal-data (2.4.0+dfsg-1) ... Removing gfortran-8 (8.3.0-6) ... Removing ghostscript (9.27~dfsg-2+deb10u5) ... Removing gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Removing hmmer (3.2.1+dfsg-1) ... Removing hyphy-mpi (2.3.14+dfsg-1) ... Removing hyphy-common (2.3.14+dfsg-1) ... Removing libibverbs-dev:amd64 (22.1-1) ... Removing ibverbs-providers:amd64 (22.1-1) ... Removing infernal (1.1.2-2) ... Removing javascript-common (11) ... Removing kalign (1:2.03+20110620-5) ... Removing krb5-locales (1.17-3+deb10u4) ... Removing libace-perl (1.92-8+b1) ... Removing libnetcdf13:amd64 (1:4.6.2-1) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libtest-most-perl (0.35-1) ... Removing libtest-differences-perl (0.65-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-xs-perl (0.04-5+b1) ... Removing libalgorithm-diff-perl (1.19.03-2) ... Removing libalgorithm-munkres-perl (0.08-3) ... Removing libapparmor1:amd64 (2.13.2-10) ... Removing libaprutil1-ldap:amd64 (1.6.1-4) ... Removing libaprutil1-dbd-sqlite3:amd64 (1.6.1-4) ... Removing libaprutil1:amd64 (1.6.1-4) ... Removing libapr1:amd64 (1.6.5-1+b1) ... Removing libargtable2-0 (13-1) ... Removing libarmadillo9 (1:9.200.7+dfsg-1) ... Removing libarpack2:amd64 (3.7.0-2) ... Removing libarray-compare-perl (3.0.2-1) ... Removing libstdc++-8-dev:amd64 (8.3.0-6) ... Removing libgfortran-8-dev:amd64 (8.3.0-6) ... Removing libtbb2:amd64 (2018~U6-4) ... Removing nodejs (10.24.0~dfsg-1~deb10u1) ... Removing libauthen-sasl-perl (2.1600-1) ... Removing libgs9:amd64 (9.27~dfsg-2+deb10u5) ... Removing libcupsfilters1:amd64 (1.21.6-5) ... Removing libmoo-perl (2.003004-2) ... Removing libimport-into-perl (1.002005-1) ... Removing libmodule-runtime-perl (0.016-1) ... Removing libparams-classify-perl (0.015-1+b1) ... Removing libdevel-callchecker-perl (0.008-1) ... Removing libb-hooks-op-check-perl (0.22-1+b1) ... Removing libbio-asn1-entrezgene-perl (1.720-2) ... Removing libbio-perl-run-perl (1.7.2-4) ... Removing libbio-perl-perl (1.7.2-3) ... Removing libdate-calc-xs-perl (6.4-1+b4) ... Removing libdate-calc-perl (6.4-1) ... Removing libbit-vector-perl (7.4-1+b5) ... Removing libsuperlu5:amd64 (5.2.1+dfsg1-4) ... Removing python3-scipy (1.1.0-7) ... Removing python3-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libnode64:amd64 (10.24.0~dfsg-1~deb10u1) ... Removing libbrotli1:amd64 (1.0.7-2+deb10u1) ... Removing libbsd-resource-perl (1.2911-1+b3) ... Removing lynx (2.8.9rel.1-3+deb10u1) ... Removing xauth (1:1.0.10-1) ... Removing libc-ares2:amd64 (1.14.0-1+deb10u1) ... Removing libnuma-dev:amd64 (2.0.12-1) ... Removing libc6-dev:amd64 (2.28-10+deb10u1) ... Removing libc-dev-bin (2.28-10+deb10u1) ... Removing libcache-cache-perl (1.08-2) ... Removing libcaf-openmpi-3:amd64 (2.4.0-2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libcarp-clan-perl (6.07-1) ... Removing libgvpr2 (2.40.1-6+deb10u1) ... Removing libcgraph6 (2.40.1-6+deb10u1) ... Removing libcdt5 (2.40.1-6+deb10u1) ... Removing libcgi-fast-perl (1:2.13-1) ... Removing libcgi-pm-perl (4.40-1) ... Removing libcharls2:amd64 (2.0.0+dfsg-1) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing libxmlrpc-lite-perl (0.717-2) ... Removing libsoap-lite-perl (1.27-1) ... Removing libclass-inspector-perl (1.32-1) ... Removing librole-tiny-perl (2.000006-1) ... Removing libclass-method-modifiers-perl (2.12-1) ... Removing libclass-xsaccessor-perl (1.19-3+b2) ... Removing libclone-perl (0.41-1+b1) ... Removing libconvert-binary-c-perl (0.78-1+b4) ... Removing libmime-tools-perl (5.509-1) ... Removing libconvert-binhex-perl (1.125-1) ... Removing libspreadsheet-parseexcel-perl (0.6500-1) ... Removing libcrypt-rc4-perl (2.02-3) ... Removing libcupsimage2:amd64 (2.2.10-6+deb10u6) ... Removing libxerces-c3.2:amd64 (3.2.2+debian-1+deb10u1) ... Removing libdapclient6v5:amd64 (3.20.3-1) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing libdapserver7v5:amd64 (3.20.3-1) ... Removing libdap25:amd64 (3.20.3-1) ... Removing libdata-dump-perl (1.23-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libdate-manip-perl (6.76-1) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libdbd-mysql-perl:amd64 (4.050-2) ... Removing libdbd-pg-perl (3.7.4-3) ... Removing libdbd-sqlite3-perl:amd64 (1.62-3) ... Removing libdbi-perl:amd64 (1.642-1+deb10u2) ... Removing samtools (1.9-4) ... Removing libhts2:amd64 (1.9-12~deb10u1) ... Removing libdeflate0:amd64 (1.2-1) ... Removing libdevel-globaldestruction-perl (0.14-1) ... Removing libdevel-stacktrace-perl (2.0300-1) ... Removing libdevel-symdump-perl (2.18-3) ... Removing libdigest-perl-md5-perl (1.9-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing libdynaloader-functions-perl (0.003-1) ... Removing phyml (3:3.3.20180621-2) ... Removing openmpi-bin (3.1.3-11) ... Removing openssh-client (1:7.9p1-10+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libxml-xpath-perl (1.44-1) ... Removing libxml-twig-perl (1:3.50-1.1) ... Removing libxml-dom-xpath-perl (0.14-3) ... Removing libxml-dom-perl (1.44-2) ... Removing libepsilon1:amd64 (0.9.2+dfsg-4) ... Removing liberror-perl (0.17027-2) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing python3-mypy (0.670-2) ... Removing python3-distutils (3.7.3-1) ... Removing python3-sparqlwrapper (1.8.2-0.1) ... Removing python3-ruamel.yaml (0.15.34-1+b1) ... Removing python3-bs4 (4.7.1-1) ... Removing python3-soupsieve (1.8+dfsg-1) ... Removing ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing python (2.7.16-1) ... Removing libtype-tiny-perl (1.004004-1) ... Removing libsvg-graph-perl (0.02-3) ... Removing libstatistics-descriptive-perl (3.0702-1) ... Removing liblist-moreutils-perl (0.416-1+b4) ... Removing libexporter-tiny-perl (1.002001-1) ... Removing libfabric1 (1.6.2-3) ... Removing libfcgi-perl (0.78-2+b3) ... Removing libtree-dagnode-perl (1.31-1) ... Removing libfile-slurp-tiny-perl (0.004-1) ... Removing libhtml-format-perl (2.12-1) ... Removing libfont-afm-perl (1.20-2) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing libspatialite7:amd64 (4.3.0a-5+b2) ... Removing libfreexl1:amd64 (1.0.5-3) ... Removing libfreezethaw-perl (0.5001-2) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libfyba0:amd64 (4.1.1-6) ... Removing libgd-perl (2.71-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing perl-doc (5.28.1-6+deb10u1) ... Removing 'diversion of /usr/bin/perldoc to /usr/bin/perldoc.stub by perl-doc' Removing libmailtools-perl (2.18-1) ... Removing libossp-uuid-perl (1.6.2-1.5+b7) ... Removing mafft (7.407-2) ... Removing libgeos-c1v5:amd64 (3.7.1-1) ... Removing libgeos-3.7.1:amd64 (3.7.1-1) ... Removing libgeotiff2:amd64 (1.4.3-1) ... Removing tm-align (20170708+dfsg-2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgif7:amd64 (5.1.4-3) ... Removing wise (2.4.1-21) ... Removing shared-mime-info (1.10-1) ... Removing libglib2.0-data (2.58.3-2+deb10u3) ... Removing libgpm2:amd64 (1.20.7-5) ... Removing libgraph-perl (1:0.9704-1) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgs9-common (9.27~dfsg-2+deb10u5) ... Removing libpq5:amd64 (11.16-0+deb10u1) ... Removing libgts-bin (0.7.6+darcs121130-4) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libhdf4-0-alt (4.2.13-4) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1) ... Removing libhtml-form-perl (6.03-1) ... Removing libhtml-tableextract-perl (2.15-1) ... Removing libhttp-daemon-perl (6.01-3) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing python3-prov (1.5.2-1) ... Removing python3-lxml:amd64 (4.3.2-1+deb10u4) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libijs-0.35:amd64 (0.35-14) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libipc-run-perl (20180523.0-1) ... Removing libio-pty-perl (1:1.08-1.1+b5) ... Removing libio-sessiondata-perl (1.03-1) ... Removing libnet-smtp-ssl-perl (1.04-1) ... Removing libio-string-perl (1.08-3) ... Removing libole-storage-lite-perl (0.19-2+deb10u1) ... Removing libio-stringy-perl (2.111-3) ... Removing libipc-sharelite-perl (0.17-4+b3) ... Removing libjansson4:amd64 (2.12-1) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjbig2dec0:amd64 (0.16-1+deb10u1) ... Removing libjcode-pm-perl (2.06-1) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Removing libkmlxsd1:amd64 (1.3.0-7) ... Removing libkmlregionator1:amd64 (1.3.0-7) ... Removing libkmlconvenience1:amd64 (1.3.0-7) ... Removing libkmlengine1:amd64 (1.3.0-7) ... Removing libkmldom1:amd64 (1.3.0-7) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing libodbc1:amd64 (2.3.6-0.1) ... Removing liblua5.2-0:amd64 (5.2.4-1.1+b2) ... Removing libmagic1:amd64 (1:5.35-4+deb10u2) ... Removing libmagic-mgc (1:5.35-4+deb10u2) ... Removing libmariadb3:amd64 (1:10.3.34-0+deb10u1) ... Removing libmath-spline-perl (0.02-2) ... Removing libmath-derivative-perl (1.01-1) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libmldbm-perl (2.05-2) ... Removing libnl-route-3-dev:amd64 (3.4.0-1) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-dev:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u5) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libogdi3.2 (3.2.1+ds-4) ... Removing libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Removing libossp-uuid16:amd64 (1.6.2-1.5+b7) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libspreadsheet-writeexcel-perl (2.40-1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpopt0:amd64 (1.16-12) ... Removing libpostscript-perl (0.06-3) ... Removing proj-bin (5.2.0-1) ... Removing libproj13:amd64 (5.2.0-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing libqhull7:amd64 (2015.2-4) ... Removing libreadonly-perl (2.050-1) ... Removing libref-util-perl (0.204-1) ... Removing libref-util-xs-perl (0.117-1+b1) ... Removing libsasl2-modules:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libset-scalar-perl (1.29-2) ... Removing m4 (1.4.18-2) ... Removing libsigsegv2:amd64 (2.12-2) ... Removing libsort-naturally-perl (1.03-2) ... Removing libstrictures-perl (2.000005-1) ... Removing libsub-exporter-progressive-perl (0.001013-1) ... Removing libsub-name-perl (0.21-1+b3) ... Removing libsub-quote-perl (2.005001-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1) ... Removing libsvg-perl (2.84-1) ... Removing libtask-weaken-perl (1.06-1) ... Removing libtest-deep-perl (1.128-1) ... Removing libtext-iconv-perl (1.7-5+b7) ... Removing libthai-data (0.1.28-2) ... Removing libtie-ixhash-perl (1.23-2) ... Removing libtype-tiny-xs-perl (0.014-1+b1) ... Removing libunicode-map-perl (0.112-12+b1) ... Removing libuv1:amd64 (1.24.1-1+deb10u1) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxml-sax-writer-perl (0.57-1) ... Removing libxml-filter-buffertext-perl (1.01-6) ... Removing libxml-simple-perl (2.25-1) ... Removing libxml-libxslt-perl (1.96-1+b1) ... Removing libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-expat-perl (0.51-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::Expat with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-1) ... Removing libxml-perl (0.08-3) ... Removing libxml-regexp-perl (0.04-1) ... Removing libxml-sax-base-perl (1.09-1) ... Removing libxml-writer-perl (0.625-1) ... Removing libxml-xpathengine-perl (0.14-1) ... Removing libxmuu1:amd64 (2:1.1.2-2+b3) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxslt1.1:amd64 (1.1.32-2.2~deb10u1) ... Removing python3-yaml (3.13-2) ... Removing libyaml-libyaml-perl (0.76+repack-1) ... Removing libyaml-perl (1.27-1) ... Removing linux-libc-dev:amd64 (4.19.249-2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing lynx-common (2.8.9rel.1-3+deb10u1) ... Removing manpages-dev (4.16-2) ... Removing manpages (4.16-2) ... Removing maq (0.7.1-8) ... Removing mariadb-common (1:10.3.34-0+deb10u1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing menu (2.1.47+b1) ... Removing muscle (1:3.8.1551-2) ... Removing mustang (3.2.3-3) ... Removing mysql-common (5.8+1.0.5) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing ncoils (2002-7) ... Removing nodejs-doc (10.24.0~dfsg-1~deb10u1) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing openmpi-common (3.1.3-11) ... Removing phylip (1:3.697+dfsg-1) ... Removing poa (2.0+20060928-7) ... Removing poppler-data (0.4.9-2) ... Removing prank (0.0.170427+dfsg-2) ... Removing primer3 (2.4.0-2) ... Removing probalign (1.4-8) ... Removing probcons (1.12-12) ... Removing proda (1.0-12) ... Removing proj-data (5.2.0-1) ... Removing publicsuffix (20220811.1734-0+deb10u1) ... Removing python2-minimal (2.7.16-1) ... Removing python3-cachecontrol (0.11.7-1) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-html5lib (1.0.1-1) ... Removing python3-rdflib-jsonld (0.4.0-4) ... Removing python3-rdflib (4.2.2-2) ... Removing python3-isodate (0.6.0-1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-lockfile (1:0.12.2-2) ... Removing python3-mistune (0.8.4-1) ... Removing python3-mypy-extensions (0.4.1-1) ... Removing python3-olefile (0.46-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing python3-shellescape (3.4.1-3) ... Removing python3-typed-ast (1.3.1-1) ... Removing python3-typing-extensions (3.7.2-1) ... Removing python3-webencodings (0.5.1-1) ... Removing raxml (8.2.12+dfsg-1) ... Removing sim4 (0.0.20121010-5) ... Removing t-coffee (12.00.7fb08c2-4) ... Removing tigr-glimmer (3.02b-2) ... Removing unzip (6.0-23+deb10u2) ... Removing wise-data (2.4.1-21) ... Removing xdg-user-dirs (0.17-2) ... Removing xz-utils (5.2.4-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing gcc-8 (8.3.0-6) ... Removing binutils (2.31.1-16) ... Removing binutils-x86-64-linux-gnu (2.31.1-16) ... Removing libbinutils:amd64 (2.31.1-16) ... Removing binutils-common:amd64 (2.31.1-16) ... Removing python3-requests (2.21.0-1) ... Removing cpp-8 (8.3.0-6) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-liberation (1:1.07.4-9) ... dpkg: warning: while removing fonts-liberation, directory '/usr/share/fonts/truetype/liberation' not empty so not removed Removing libgcc-8-dev:amd64 (8.3.0-6) ... Removing libasan5:amd64 (8.3.0-6) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libcups2:amd64 (2.2.10-6+deb10u6) ... Removing libavahi-client3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common-data:amd64 (0.7-4+deb10u1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libcc1-0:amd64 (8.3.0-6) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Removing libxml-parser-perl (2.44-4) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libisl19:amd64 (0.20-2) ... Removing libitm1:amd64 (8.3.0-6) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing libkmlbase1:amd64 (1.3.0-7) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing liblsan0:amd64 (8.3.0-6) ... Removing libminizip1:amd64 (1.1-8+b1) ... Removing libmpc3:amd64 (1.1.0-1) ... Removing libmpfr6:amd64 (4.0.2-1) ... Removing libmpx2:amd64 (8.3.0-6) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libquadmath0:amd64 (8.3.0-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtsan0:amd64 (8.3.0-6) ... Removing libubsan1:amd64 (8.3.0-6) ... Removing liburiparser1:amd64 (0.9.1-1+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-idna (2.6-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-urllib3 (1.24.1-1) ... Removing python3-six (1.12.0-1) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing mime-support (3.62) ... Removing rake (12.3.1-3+deb10u1) ... Removing ruby (1:2.5.1) ... Removing ruby2.5 (2.5.5-3+deb10u4) ... Removing libruby2.5:amd64 (2.5.5-3+deb10u4) ... Removing rubygems-integration (1.11+deb10u1) ... Removing libwww-perl (6.36-2) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libfile-listing-perl (6.04-1) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing odbcinst1debian2:amd64 (2.3.6-0.1) ... Removing odbcinst (2.3.6-0.1) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnet-http-perl (6.18-1) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libreadline7:amd64 (7.0-5) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing netbase (5.6) ... Removing readline-common (7.0-5) ... Removing ruby-did-you-mean (1.2.1-1) ... Removing ruby-minitest (5.11.3-1) ... Removing ruby-net-telnet (0.1.1-2) ... Removing ruby-test-unit (3.2.8-1) ... Removing ruby-power-assert (1.1.1-1) ... Removing ruby-xmlrpc (0.3.0-2) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing liburi-perl (1.76-1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 2m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'remove', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++-', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-globaldestruction-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'perl', 'perl-doc', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'proj-bin', 'proj-data', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.5', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip', 'libbio-asn1-entrezgene-perl'] 2m23.7s INFO: Running scripts post_remove 2m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_remove_exceptions'] 2m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_remove_exceptions'] 2m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--purge', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-globaldestruction-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'perl', 'perl-doc', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'proj-bin', 'proj-data', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.5', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip'] 2m25.2s DUMP: dpkg: warning: ignoring request to remove amap-align which isn't installed dpkg: warning: ignoring request to remove apache2-bin which isn't installed (Reading database ... 6662 files and directories currently installed.) Purging configuration files for autoconf (2.69-11) ... dpkg: warning: ignoring request to remove automake which isn't installed dpkg: warning: ignoring request to remove autotools-dev which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove binutils which isn't installed dpkg: warning: ignoring request to remove binutils-common which isn't installed dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove bioperl-run which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed Purging configuration files for blends-common (0.7.2) ... dpkg: warning: ignoring request to remove bowtie which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove clustalo which isn't installed Purging configuration files for clustalw (2.1+lgpl-6) ... dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove cpp-8 which isn't installed dpkg: warning: ignoring request to remove cwltool which isn't installed Purging configuration files for dbus (1.12.20-0+deb10u1) ... rmdir: failed to remove '/var/run/dbus': No such file or directory dpkg: warning: ignoring request to remove dialign which isn't installed dpkg: warning: ignoring request to remove dialign-tx which isn't installed dpkg: warning: ignoring request to remove dialign-tx-data which isn't installed dpkg: warning: ignoring request to remove emboss which isn't installed dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed dpkg: warning: ignoring request to remove exonerate which isn't installed dpkg: warning: ignoring request to remove file which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for fonts-droid-fallback (1:6.0.1r16-1.1) ... dpkg: warning: while removing fonts-droid-fallback, directory '/usr/share/fonts/truetype/droid' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-liberation which isn't installed Purging configuration files for fonts-noto-mono (20181227-1) ... dpkg: warning: while removing fonts-noto-mono, directory '/usr/share/fonts/truetype/noto' not empty so not removed dpkg: warning: ignoring request to remove fsa which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-8 which isn't installed Purging configuration files for gawk (1:4.2.1+dfsg-1) ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-8 which isn't installed dpkg: warning: ignoring request to remove gdal-data which isn't installed dpkg: warning: ignoring request to remove gfortran which isn't installed dpkg: warning: ignoring request to remove gfortran-8 which isn't installed dpkg: warning: ignoring request to remove ghostscript which isn't installed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... Purging configuration files for gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... dpkg: warning: while removing gsfonts, directory '/usr/share/fonts/type1/gsfonts' not empty so not removed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hyphy-common which isn't installed dpkg: warning: ignoring request to remove hyphy-mpi which isn't installed Purging configuration files for ibverbs-providers:amd64 (22.1-1) ... dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for javascript-common (11) ... dpkg: warning: ignoring request to remove kalign which isn't installed dpkg: warning: ignoring request to remove krb5-locales which isn't installed dpkg: warning: ignoring request to remove libace-perl which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: 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which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd-resource-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-ares2 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcache-cache-perl which isn't installed dpkg: warning: ignoring request to remove libcaf-openmpi-3 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcarp-clan-perl which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgi-fast-perl which isn't installed dpkg: warning: ignoring request to remove libcgi-pm-perl which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcharls2 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclass-inspector-perl which isn't installed dpkg: warning: ignoring request to remove libclass-method-modifiers-perl which isn't installed dpkg: warning: ignoring request to remove libclass-xsaccessor-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed Purging configuration files for libcoarrays-dev:amd64 (2.4.0-2) ... dpkg: warning: ignoring request to remove libcoarrays-openmpi-dev which 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which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libfyba0 which isn't installed dpkg: warning: ignoring request to remove libgcc-8-dev which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdal20 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgeos-3.7.1 which isn't installed dpkg: warning: ignoring request to remove libgeos-c1v5 which isn't installed dpkg: warning: ignoring request to remove libgeotiff2 which isn't installed dpkg: warning: ignoring request to remove libgfortran-8-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libglib2.0-data which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgpm2 which isn't installed dpkg: warning: ignoring request to remove libgraph-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed dpkg: warning: ignoring request to remove libgts-bin which isn't installed Purging configuration files for libgvc6 (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf4-0-alt which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libhtml-form-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-format-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tableextract-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove 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libkmlconvenience1 which isn't installed dpkg: warning: ignoring request to remove libkmldom1 which isn't installed dpkg: warning: ignoring request to remove libkmlengine1 which isn't installed dpkg: warning: ignoring request to remove libkmlregionator1 which isn't installed dpkg: warning: ignoring request to remove libkmlxsd1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring 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isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libodbc1 which isn't installed dpkg: warning: ignoring request to remove libogdi3.2 which isn't installed dpkg: warning: ignoring request to remove libole-storage-lite-perl which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed Purging configuration files for libopenmpi-dev:amd64 (3.1.3-11) ... dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libossp-uuid-perl which isn't installed dpkg: warning: ignoring request to remove libossp-uuid16 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpoppler82 which isn't installed dpkg: warning: ignoring request to remove libpopt0 which isn't installed dpkg: warning: ignoring request to remove libpostscript-perl which isn't installed dpkg: warning: ignoring request to 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warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libyaml-libyaml-perl which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for lynx (2.8.9rel.1-3+deb10u1) ... Purging configuration files for lynx-common (2.8.9rel.1-3+deb10u1) ... dpkg: warning: ignoring request to remove m4 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove manpages which isn't installed dpkg: warning: ignoring request to remove manpages-dev which isn't installed dpkg: warning: ignoring request to remove maq which isn't installed Purging configuration files for mariadb-common (1:10.3.34-0+deb10u1) ... Purging configuration files for med-config (3.3) ... Purging configuration files for menu (2.1.47+b1) ... Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove mummer which isn't installed dpkg: warning: ignoring request to remove muscle which isn't installed dpkg: warning: ignoring request to remove mustang which isn't installed Purging configuration files for mysql-common (5.8+1.0.5) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (5.6) ... dpkg: warning: ignoring request to remove nodejs which isn't installed dpkg: warning: ignoring request to remove nodejs-doc which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for odbcinst (2.3.6-0.1) ... dpkg: warning: ignoring request to remove odbcinst1debian2 which isn't installed Purging configuration files for openmpi-bin (3.1.3-11) ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Purging configuration files for openssh-client (1:7.9p1-10+deb10u2) ... dpkg: warning: while removing openssh-client, directory '/usr/lib/systemd' not empty so not removed Purging configuration files for openssl (1.1.1n-0+deb10u3) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... Purging configuration files for perl-doc (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove perl-tk which isn't installed dpkg: warning: ignoring request to remove phylip which isn't installed dpkg: warning: ignoring request to remove phyml which isn't installed dpkg: warning: ignoring request to remove poa which isn't installed Purging configuration files for poppler-data (0.4.9-2) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove prank which isn't installed Purging configuration files for primer3 (2.4.0-2) ... dpkg: warning: ignoring request to remove probalign which isn't installed dpkg: warning: ignoring request to remove probcons which isn't installed dpkg: warning: ignoring request to remove proda which isn't installed dpkg: warning: ignoring request to remove proj-bin which isn't installed dpkg: warning: ignoring request to remove proj-data which isn't installed dpkg: warning: ignoring request to remove publicsuffix which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-bs4 which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-gdal which isn't installed dpkg: warning: ignoring request to remove python3-html5lib which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lockfile which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mistune which isn't installed dpkg: warning: ignoring request to remove python3-mypy which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-olefile which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-rdflib-jsonld which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-ruamel.yaml which isn't installed dpkg: warning: ignoring request to remove python3-schema-salad which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-shellescape which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-soupsieve which isn't installed dpkg: warning: ignoring request to remove python3-sparqlwrapper which isn't installed dpkg: warning: ignoring request to remove python3-typed-ast which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-webencodings which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove rake which isn't installed dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove ruby which isn't installed dpkg: warning: ignoring request to remove ruby-did-you-mean which isn't installed dpkg: warning: ignoring request to remove ruby-minitest which isn't installed dpkg: warning: ignoring request to remove ruby-net-telnet which isn't installed dpkg: warning: ignoring request to remove ruby-power-assert which isn't installed dpkg: warning: ignoring request to remove ruby-test-unit which isn't installed dpkg: warning: ignoring request to remove ruby-xmlrpc which isn't installed dpkg: warning: ignoring request to remove ruby2.5 which isn't installed dpkg: warning: ignoring request to remove rubygems-integration which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (1.10-1) ... dpkg: warning: ignoring request to remove sim4 which isn't installed dpkg: warning: ignoring request to remove t-coffee which isn't installed dpkg: warning: ignoring request to remove tigr-glimmer which isn't installed dpkg: warning: ignoring request to remove tm-align which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... dpkg: warning: ignoring request to remove wise which isn't installed dpkg: warning: ignoring request to remove wise-data which isn't installed Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xauth which isn't installed Purging configuration files for xdg-user-dirs (0.17-2) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 2m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--purge', 'amap-align', 'apache2-bin', 'autoconf', 'automake', 'autotools-dev', 'bedtools', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bioperl', 'bioperl-run', 'blast2', 'blends-common', 'bowtie', 'bwa', 'bzip2', 'ca-certificates', 'clustalo', 'clustalw', 'cpp', 'cpp-8', 'cwltool', 'dbus', 'dialign', 'dialign-tx', 'dialign-tx-data', 'emboss', 'emboss-data', 'emboss-lib', 'exonerate', 'file', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-droid-fallback', 'fonts-glyphicons-halflings', 'fonts-lato', 'fonts-liberation', 'fonts-noto-mono', 'fsa', 'g++', 'g++-8', 'gawk', 'gcc', 'gcc-8', 'gdal-data', 'gfortran', 'gfortran-8', 'ghostscript', 'graphviz', 'gsfonts', 'hmmer', 'hyphy-common', 'hyphy-mpi', 'ibverbs-providers:amd64', 'infernal', 'javascript-common', 'kalign', 'krb5-locales', 'libace-perl', 'libaec0:amd64', 'libalgorithm-diff-perl', 'libalgorithm-diff-xs-perl', 'libalgorithm-munkres-perl', 'libapache-dbi-perl', 'libapache2-mod-perl2', 'libapache2-reload-perl', 'libapparmor1:amd64', 'libapr1:amd64', 'libaprutil1:amd64', 'libaprutil1-dbd-sqlite3:amd64', 'libaprutil1-ldap:amd64', 'libargtable2-0', 'libarmadillo9', 'libarpack2:amd64', 'libarray-compare-perl', 'libasan5:amd64', 'libatomic1:amd64', 'libauthen-sasl-perl', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libb-hooks-op-check-perl', 'libbinutils:amd64', 'libbio-perl-perl', 'libbio-perl-run-perl', 'libbit-vector-perl', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd-resource-perl', 'libbsd0:amd64', 'libc-ares2:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcache-cache-perl', 'libcaf-openmpi-3:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcarp-clan-perl', 'libcc1-0:amd64', 'libcdt5', 'libcgi-fast-perl', 'libcgi-pm-perl', 'libcgraph6', 'libcharls2:amd64', 'libclass-data-inheritable-perl', 'libclass-inspector-perl', 'libclass-method-modifiers-perl', 'libclass-xsaccessor-perl', 'libclone-perl', 'libcoarrays-dev:amd64', 'libcoarrays-openmpi-dev:amd64', 'libconvert-binary-c-perl', 'libconvert-binhex-perl', 'libcrypt-rc4-perl', 'libcups2:amd64', 'libcupsfilters1:amd64', 'libcupsimage2:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdap25:amd64', 'libdapclient6v5:amd64', 'libdapserver7v5:amd64', 'libdata-dump-perl', 'libdata-stag-perl', 'libdate-calc-perl', 'libdate-calc-xs-perl', 'libdate-manip-perl', 'libdatrie1:amd64', 'libdbd-mysql-perl:amd64', 'libdbd-pg-perl', 'libdbd-sqlite3-perl:amd64', 'libdbi-perl:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl', 'libdevel-globaldestruction-perl', 'libdevel-stacktrace-perl', 'libdevel-symdump-perl', 'libdigest-perl-md5-perl', 'libdivsufsort3:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libencode-locale-perl', 'libepsilon1:amd64', 'liberror-perl', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfabric1', 'libfcgi-perl', 'libfile-listing-perl', 'libfile-slurp-tiny-perl', 'libfont-afm-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfreexl1:amd64', 'libfreezethaw-perl', 'libfribidi0:amd64', 'libfyba0:amd64', 'libgcc-8-dev:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdal20', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeos-3.7.1:amd64', 'libgeos-c1v5:amd64', 'libgeotiff2:amd64', 'libgfortran-8-dev:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libglib2.0-0:amd64', 'libglib2.0-data', 'libgomp1:amd64', 'libgpm2:amd64', 'libgraph-perl', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgs9:amd64', 'libgs9-common', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgts-bin', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhdf4-0-alt', 'libhdf5-103:amd64', 'libhpdf-2.3.0:amd64', 'libhtml-form-perl', 'libhtml-format-perl', 'libhtml-parser-perl', 'libhtml-tableextract-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhts2:amd64', 'libhttp-cookies-perl', 'libhttp-daemon-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libhwloc-dev:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs-dev:amd64', 'libibverbs1:amd64', 'libice6:amd64', 'libicu63:amd64', 'libidn11:amd64', 'libijs-0.35:amd64', 'libimagequant0:amd64', 'libimport-into-perl', 'libio-html-perl', 'libio-pty-perl', 'libio-sessiondata-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libio-stringy-perl', 'libipc-run-perl', 'libipc-sharelite-perl', 'libisl19:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjbig2dec0:amd64', 'libjcode-pm-perl', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjson-c3:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkmlbase1:amd64', 'libkmlconvenience1:amd64', 'libkmldom1:amd64', 'libkmlengine1:amd64', 'libkmlregionator1:amd64', 'libkmlxsd1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'liblist-moreutils-perl', 'liblmdb0:amd64', 'liblsan0:amd64', 'libltdl-dev:amd64', 'libltdl7:amd64', 'liblua5.2-0:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmagic-mgc', 'libmagic1:amd64', 'libmailtools-perl', 'libmariadb3:amd64', 'libmath-derivative-perl', 'libmath-spline-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmime-tools-perl', 'libminizip1:amd64', 'libmldbm-perl', 'libmodule-runtime-perl', 'libmoo-perl', 'libmpc3:amd64', 'libmpdec2:amd64', 'libmpfr6:amd64', 'libmpx2:amd64', 'libncurses6:amd64', 'libnet-http-perl', 'libnet-smtp-ssl-perl', 'libnet-ssleay-perl', 'libnetcdf13:amd64', 'libnghttp2-14:amd64', 'libnl-3-200:amd64', 'libnl-3-dev:amd64', 'libnl-route-3-200:amd64', 'libnl-route-3-dev:amd64', 'libnode64:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma-dev:amd64', 'libnuma1:amd64', 'libodbc1:amd64', 'libogdi3.2', 'libole-storage-lite-perl', 'libopenjp2-7:amd64', 'libopenmpi-dev:amd64', 'libopenmpi3:amd64', 'libossp-uuid-perl', 'libossp-uuid16:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libparams-classify-perl', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpmix2:amd64', 'libpng16-16:amd64', 'libpoppler82:amd64', 'libpopt0:amd64', 'libpostscript-perl', 'libpq5:amd64', 'libproj13:amd64', 'libpsl5:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libqhull7:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libreadline7:amd64', 'libreadonly-perl', 'libref-util-perl', 'libref-util-xs-perl', 'librole-tiny-perl', 'librtmp1:amd64', 'libruby2.5:amd64', 'libsasl2-2:amd64', 'libsasl2-modules:amd64', 'libsasl2-modules-db:amd64', 'libset-scalar-perl', 'libsigsegv2:amd64', 'libsm6:amd64', 'libsoap-lite-perl', 'libsort-naturally-perl', 'libspatialite7:amd64', 'libspreadsheet-parseexcel-perl', 'libspreadsheet-writeexcel-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libstatistics-descriptive-perl', 'libstdc++-8-dev:amd64', 'libstrictures-perl', 'libsub-exporter-progressive-perl', 'libsub-name-perl', 'libsub-quote-perl', 'libsub-uplevel-perl', 'libsuperlu5:amd64', 'libsvg-graph-perl', 'libsvg-perl', 'libsz2:amd64', 'libtask-weaken-perl', 'libtbb2:amd64', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtext-iconv-perl', 'libthai-data', 'libthai0:amd64', 'libtie-ixhash-perl', 'libtiff5:amd64', 'libtimedate-perl', 'libtool', 'libtree-dagnode-perl', 'libtry-tiny-perl', 'libtsan0:amd64', 'libtype-tiny-perl', 'libtype-tiny-xs-perl', 'libubsan1:amd64', 'libunicode-map-perl', 'liburi-perl', 'liburiparser1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxerces-c3.2:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml-dom-perl', 'libxml-dom-xpath-perl', 'libxml-filter-buffertext-perl', 'libxml-libxml-perl', 'libxml-libxslt-perl', 'libxml-namespacesupport-perl', 'libxml-parser-perl', 'libxml-perl', 'libxml-regexp-perl', 'libxml-sax-base-perl', 'libxml-sax-expat-perl', 'libxml-sax-perl', 'libxml-sax-writer-perl', 'libxml-simple-perl', 'libxml-twig-perl', 'libxml-writer-perl', 'libxml-xpath-perl', 'libxml-xpathengine-perl', 'libxml2:amd64', 'libxmlrpc-lite-perl', 'libxmu6:amd64', 'libxmuu1:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'libyaml-libyaml-perl', 'libyaml-perl', 'linux-libc-dev:amd64', 'lsb-base', 'lynx', 'lynx-common', 'm4', 'mafft', 'manpages', 'manpages-dev', 'maq', 'mariadb-common', 'med-config', 'menu', 'mime-support', 'mummer', 'muscle', 'mustang', 'mysql-common', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncoils', 'netbase', 'nodejs', 'nodejs-doc', 'ocl-icd-libopencl1:amd64', 'odbcinst', 'odbcinst1debian2:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssl', 'perl', 'perl-doc', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'perl-tk', 'phylip', 'phyml', 'poa', 'poppler-data', 'prank', 'primer3', 'probalign', 'probcons', 'proda', 'proj-bin', 'proj-data', 'publicsuffix', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-bs4', 'python3-cachecontrol', 'python3-certifi', 'python3-chardet', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-gdal', 'python3-html5lib', 'python3-idna', 'python3-isodate', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-minimal', 'python3-mistune', 'python3-mypy', 'python3-mypy-extensions', 'python3-networkx', 'python3-numpy', 'python3-olefile', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pyparsing', 'python3-rdflib', 'python3-rdflib-jsonld', 'python3-requests', 'python3-ruamel.yaml', 'python3-schema-salad', 'python3-scipy', 'python3-shellescape', 'python3-six', 'python3-soupsieve', 'python3-sparqlwrapper', 'python3-typed-ast', 'python3-typing-extensions', 'python3-urllib3', 'python3-webencodings', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'rake', 'raxml', 'readline-common', 'ruby', 'ruby-did-you-mean', 'ruby-minitest', 'ruby-net-telnet', 'ruby-power-assert', 'ruby-test-unit', 'ruby-xmlrpc', 'ruby2.5', 'rubygems-integration', 'samtools', 'sensible-utils', 'shared-mime-info', 'sim4', 't-coffee', 'tigr-glimmer', 'tm-align', 'ucf', 'unzip', 'wise', 'wise-data', 'x11-common', 'xauth', 'xdg-user-dirs', 'xz-utils', 'zip'] 2m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--purge', 'libbio-asn1-entrezgene-perl'] 2m25.2s DUMP: dpkg: warning: ignoring request to remove libbio-asn1-entrezgene-perl which isn't installed 2m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--purge', 'libbio-asn1-entrezgene-perl'] 2m25.2s INFO: Running scripts post_purge 2m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_purge_exceptions'] 2m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_purge_exceptions'] 2m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--purge', '--pending'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--purge', '--pending'] 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--remove', '--pending'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg', '--remove', '--pending'] 2m25.3s INFO: Running scripts post_test 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_test_exceptions'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'tmp/scripts/post_test_exceptions'] 2m25.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 2m25.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 2m26.6s DEBUG: No broken symlinks as far as we can find. 2m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-divert', '--list'] 2m26.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'dpkg-divert', '--list'] 2m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'clean'] 2m26.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmphe_acyes', 'apt-get', 'clean'] 2m26.7s DEBUG: Recording chroot state 2m27.2s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: gsfonts, fonts-noto-mono, fonts-liberation, fonts-dejavu-core, fonts-glyphicons-halflings, poppler-data, fonts-lato, fonts-droid-fallback /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-noto-mono, fonts-liberation, fonts-dejavu-core, fonts-glyphicons-halflings, fonts-lato, fonts-droid-fallback /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/droid/ owned by: fonts-droid-fallback /usr/share/fonts/truetype/droid/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/liberation/ owned by: fonts-liberation /usr/share/fonts/truetype/liberation/.uuid not owned /usr/share/fonts/truetype/noto/ owned by: fonts-noto-mono /usr/share/fonts/truetype/noto/.uuid not owned /usr/share/fonts/type1/ owned by: gsfonts /usr/share/fonts/type1/.uuid not owned /usr/share/fonts/type1/gsfonts/ owned by: gsfonts /usr/share/fonts/type1/gsfonts/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned 2m27.2s INFO: PASS: Installation and purging test. 2m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/shm'] 2m27.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/shm'] 2m27.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/console'] 2m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/console'] 2m27.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/ptmx'] 2m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/ptmx'] 2m27.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/pts'] 2m27.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/dev/pts'] 2m27.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/proc'] 2m27.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmphe_acyes/proc'] 2m27.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 2m28.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmphe_acyes'] 2m28.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmphe_acyes 2m28.0s INFO: PASS: All tests. 2m28.0s INFO: piuparts run ends. ret=0 End: 2024-07-31 03:19:04 GMT