Start: 2024-02-01 14:49:13 GMT Package: ampliconnoise Version: 1.29-8 Installed-Size: 1427 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), libgsl23 (>= 2.5), libgslcblas0 (>= 2.4), libopenmpi3, mafft Recommends: openmpi-bin Description: removal of noise from 454 sequenced PCR amplicons Homepage: https://github.com/lanzen/ampliconnoise Description-md5: cd8d15fcdec00d4fc4f08c519dbff884 Tag: role::program Section: science Priority: optional Filename: pool/main/a/ampliconnoise/ampliconnoise_1.29-8_amd64.deb Size: 475776 MD5sum: 50f752968823d61bf842868c74d6b291 SHA256: 697f63b48e73c8d87168037933628bd22162e4ab1b9b6cfed7cdb1666f1f376e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt ampliconnoise=1.29-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt ampliconnoise=1.29-8 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmptdcs5kh9 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmptdcs5kh9 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmptdcs5kh9/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmptdcs5kh9/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'update'] 0m2.5s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'update'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', '-yf', 'dist-upgrade'] 0m3.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', '-yf', 'dist-upgrade'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.4s INFO: Running scripts post_setup 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_dummy_users'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_forbid_home'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_minimize'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_setup_zz_backports'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'clean'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'clean'] 0m4.4s DEBUG: Recording chroot state 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-divert', '--list'] 0m5.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-divert', '--list'] 0m5.1s INFO: Running scripts is_testable 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/is_testable_uninstallable'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/is_testable_uninstallable'] 0m5.1s INFO: apt-cache does not know about any of the requested packages 0m5.1s INFO: Running scripts pre_test 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_test_exceptions'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_test_exceptions'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_test_root_password'] 0m5.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_test_root_password'] 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m6.5s DEBUG: No broken symlinks as far as we can find. 0m6.5s INFO: Running scripts pre_install 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_database-server'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_database-server'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_exceptions'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_exceptions'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_extras'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_extras'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_log_alternatives'] 0m6.5s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_install_log_alternatives'] 0m6.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m7.8s DEBUG: No broken symlinks as far as we can find. 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-cache', 'policy'] 0m8.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-cache', 'policy'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-cache', 'policy', 'ampliconnoise'] 0m8.9s DUMP: ampliconnoise: Installed: (none) Candidate: 1.29-8 Version table: 1.29-8 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-cache', 'policy', 'ampliconnoise'] 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', '-y', 'install', 'ampliconnoise=1.29-8'] 0m14.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libgdbm-compat4 libgdbm6 libgfortran5 libgsl23 libgslcblas0 libhwloc-plugins libhwloc5 libibverbs1 libicu63 libltdl7 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libxml2 mafft ocl-icd-libopencl1 perl perl-modules-5.28 Suggested packages: gdbm-l10n gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhwloc-contrib-plugins pciutils sensible-utils opencl-icd perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl Recommended packages: openmpi-bin ibverbs-providers blast2 libwww-perl lynx ruby netbase The following NEW packages will be installed: ampliconnoise libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libgdbm-compat4 libgdbm6 libgfortran5 libgsl23 libgslcblas0 libhwloc-plugins libhwloc5 libibverbs1 libicu63 libltdl7 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libxml2 mafft ocl-icd-libopencl1 perl perl-modules-5.28 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 24.0 MB of archives. After this operation, 116 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libgslcblas0 amd64 2.5+dfsg-6 [101 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libgsl23 amd64 2.5+dfsg-6 [880 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libibverbs1 amd64 22.1-1 [51.2 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpsm2-2 amd64 11.2.78-1 [177 kB] Get:17 http://deb.debian.org/debian buster/main amd64 librdmacm1 amd64 22.1-1 [65.3 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libfabric1 amd64 1.6.2-3 [396 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:26 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libhwloc-plugins amd64 1.11.12-3 [17.4 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpmix2 amd64 3.1.2-3 [498 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libopenmpi3 amd64 3.1.3-11 [2191 kB] Get:30 http://deb.debian.org/debian buster/main amd64 mafft amd64 7.407-2 [999 kB] Get:31 http://deb.debian.org/debian buster/main amd64 ampliconnoise amd64 1.29-8 [476 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.0 MB in 0s (65.3 MB/s) Selecting previously unselected package perl-modules-5.28. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6463 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.28_5.28.1-6+deb10u1_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6+deb10u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-4_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-4) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up libgslcblas0:amd64 (2.5+dfsg-6) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up libgsl23:amd64 (2.5+dfsg-6) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libevent-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libpsm2-2 (11.2.78-1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libhwloc5:amd64 (1.11.12-3) ... Setting up libhwloc-plugins:amd64 (1.11.12-3) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libibverbs1:amd64 (22.1-1) ... Setting up libpmix2:amd64 (3.1.2-3) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up librdmacm1:amd64 (22.1-1) ... Setting up mafft (7.407-2) ... Setting up libfabric1 (1.6.2-3) ... Setting up libopenmpi3:amd64 (3.1.3-11) ... Setting up ampliconnoise (1.29-8) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', '-y', 'install', 'ampliconnoise=1.29-8'] 0m14.2s INFO: Running scripts post_install 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_install_exceptions'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_install_exceptions'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_install_log_alternatives'] 0m14.2s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=libpsm-infinipath1: piuparts=ampliconnoise=1.29-8: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 libpsm_infinipath.so.1 /usr/lib/libpsm1/libpsm_infinipath.so.1.16 40 LOG-ALTERNATIVES: dpkg=perl: piuparts=ampliconnoise=1.29-8: /usr/bin/update-alternatives --remove rename /usr/bin/prename 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_install_log_alternatives'] 0m14.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m15.4s DEBUG: No broken symlinks as far as we can find. 0m15.4s INFO: /bin converted to /usr/bin by /usr merge 0m15.4s INFO: /lib converted to /usr/lib by /usr merge 0m15.4s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m15.4s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m15.4s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m15.4s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m15.4s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m15.4s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m15.4s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m15.4s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m15.4s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m15.4s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m15.4s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m15.4s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m15.4s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m15.4s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m15.4s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m15.4s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m15.4s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m15.4s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m15.4s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m15.4s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m15.5s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m15.5s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m15.5s INFO: /sbin converted to /usr/sbin by /usr merge 0m15.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', '-ac', '--ignore-obsolete'] 0m17.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', '-ac', '--ignore-obsolete'] 0m17.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m17.3s DUMP: 0.15.6 0m17.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m17.3s INFO: Running adequate version 0.15.6 now. 0m17.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'ampliconnoise'] 0m17.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'ampliconnoise'] 0m17.6s INFO: Running scripts pre_remove 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_exceptions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/pre_remove_exceptions'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.4s DUMP: install ok installed adduser adduser 3.118 install ok installed ampliconnoise ampliconnoise 1.29-8 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libevent-2.1-6:amd64 libevent-2.1-6 2.1.8-stable-4 install ok installed libevent-core-2.1-6:amd64 libevent-core-2.1-6 2.1.8-stable-4 install ok installed libevent-pthreads-2.1-6:amd64 libevent-pthreads-2.1-6 2.1.8-stable-4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfabric1 libfabric1 1.6.2-3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgsl23:amd64 libgsl23 2.5+dfsg-6 install ok installed libgslcblas0:amd64 libgslcblas0 2.5+dfsg-6 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 1.11.12-3 install ok installed libhwloc5:amd64 libhwloc5 1.11.12-3 install ok installed libibverbs1:amd64 libibverbs1 22.1-1 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnl-3-200:amd64 libnl-3-200 3.4.0-1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.4.0-1 install ok installed libnuma1:amd64 libnuma1 2.0.12-1 install ok installed libopenmpi3:amd64 libopenmpi3 3.1.3-11 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpmix2:amd64 libpmix2 3.1.2-3 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6 install ok installed libpsm2-2 libpsm2-2 11.2.78-1 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed librdmacm1:amd64 librdmacm1 22.1-1 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u4 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mafft mafft 7.407-2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.2.12-2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'remove', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libxml2:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.28', 'ampliconnoise'] 0m21.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ampliconnoise libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libgdbm-compat4 libgdbm6 libgfortran5 libgsl23 libgslcblas0 libhwloc-plugins libhwloc5 libibverbs1 libicu63 libltdl7 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.28 libpmix2 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1 libxml2 mafft ocl-icd-libopencl1 perl perl-modules-5.28 0 upgraded, 0 newly installed, 31 to remove and 0 not upgraded. After this operation, 116 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8984 files and directories currently installed.) Removing ampliconnoise (1.29-8) ... Removing libopenmpi3:amd64 (3.1.3-11) ... Removing libpmix2:amd64 (3.1.2-3) ... Removing libevent-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Removing libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Removing libfabric1 (1.6.2-3) ... Removing mafft (7.407-2) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgsl23:amd64 (2.5+dfsg-6) ... Removing libgslcblas0:amd64 (2.5+dfsg-6) ... Removing libhwloc-plugins:amd64 (1.11.12-3) ... Removing libhwloc5:amd64 (1.11.12-3) ... Removing librdmacm1:amd64 (22.1-1) ... Removing libibverbs1:amd64 (22.1-1) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libnl-route-3-200:amd64 (3.4.0-1) ... Removing libnl-3-200:amd64 (3.4.0-1) ... Removing libpsm2-2 (11.2.78-1) ... Removing libnuma1:amd64 (2.0.12-1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libquadmath0:amd64 (8.3.0-6) ... Removing ocl-icd-libopencl1:amd64 (2.2.12-2) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'remove', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libxml2:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.28', 'ampliconnoise'] 0m21.4s INFO: Running scripts post_remove 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_remove_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_remove_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--purge', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libxml2:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.28'] 0m21.4s DUMP: dpkg: warning: ignoring request to remove libevent-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-6 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgsl23 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc5 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed (Reading database ... 6468 files and directories currently installed.) Purging configuration files for libnl-3-200:amd64 (3.4.0-1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpmix2 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--purge', 'libevent-2.1-6:amd64', 'libevent-core-2.1-6:amd64', 'libevent-pthreads-2.1-6:amd64', 'libfabric1', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libhwloc-plugins:amd64', 'libhwloc5:amd64', 'libibverbs1:amd64', 'libicu63:amd64', 'libltdl7:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi3:amd64', 'libpciaccess0:amd64', 'libperl5.28:amd64', 'libpmix2:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libxml2:amd64', 'mafft', 'ocl-icd-libopencl1:amd64', 'perl', 'perl-modules-5.28'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--purge', 'ampliconnoise'] 0m21.4s DUMP: dpkg: warning: ignoring request to remove ampliconnoise which isn't installed 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--purge', 'ampliconnoise'] 0m21.4s INFO: Running scripts post_purge 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_purge_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_purge_exceptions'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--purge', '--pending'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--purge', '--pending'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--remove', '--pending'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg', '--remove', '--pending'] 0m21.4s INFO: Running scripts post_test 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_test_exceptions'] 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'tmp/scripts/post_test_exceptions'] 0m21.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m21.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m22.8s DEBUG: No broken symlinks as far as we can find. 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-divert', '--list'] 0m22.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'dpkg-divert', '--list'] 0m22.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'clean'] 0m22.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9', 'apt-get', 'clean'] 0m22.8s DEBUG: Recording chroot state 0m23.6s INFO: PASS: Installation and purging test. 0m24.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/shm'] 0m24.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/shm'] 0m24.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/console'] 0m24.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/console'] 0m24.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/ptmx'] 0m24.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/ptmx'] 0m24.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/pts'] 0m24.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/dev/pts'] 0m24.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/proc'] 0m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9/proc'] 0m24.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m24.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptdcs5kh9'] 0m24.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmptdcs5kh9 0m24.3s INFO: PASS: All tests. 0m24.3s INFO: piuparts run ends. ret=0 End: 2024-02-01 14:49:38 GMT