Start: 2024-01-28 15:37:23 GMT Package: snakemake Version: 5.4.0-1 Installed-Size: 3547 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-appdirs, python3-configargparse, python3-datrie, python3-docutils, python3-git, python3-jsonschema, python3-ratelimiter, python3-requests, python3-wrapt, python3-yaml, python3:any, libjs-sphinxdoc (>= 1.0), sphinx-rtd-theme-common (>= 0.4.2+dfsg), ca-certificates, libjs-d3, libjs-mathjax, python3-networkx, python3-psutil, python3-pygraphviz, python3-pytools, python3-recommonmark, python3-rpy2, python3-setuptools Recommends: python3-boto, r-cran-rmarkdown Description: pythonic workflow management system Homepage: https://bitbucket.org/snakemake/snakemake Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_5.4.0-1_all.deb Size: 716952 MD5sum: 9935ad6a3c4cbeaf289754d865a57010 SHA256: e73be4d0140060f5ead10185e83b52e084f3346380e58649d1bce78a187d112c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt snakemake=5.4.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt snakemake=5.4.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpcwsarhci 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpcwsarhci 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/proc'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/proc'] 0m1.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/pts'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/pts'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/ptmx'] 0m1.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/ptmx'] 0m1.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/console'] 0m1.6s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/console'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/shm'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/shm'] 0m1.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m1.6s DEBUG: Created policy-rc.d and chmodded it. 0m1.6s DEBUG: Created resolv.conf. 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpcwsarhci/tmp/scripts/ 0m1.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpcwsarhci/tmp/scripts/ 0m1.6s INFO: Running scripts post_chroot_unpack 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'update'] 0m2.6s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'update'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', '-yf', 'dist-upgrade'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.3s INFO: Running scripts post_setup 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_dummy_users'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_forbid_home'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_minimize'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_setup_zz_backports'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'clean'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'clean'] 0m4.1s DEBUG: Recording chroot state 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-divert', '--list'] 0m4.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-divert', '--list'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/is_testable_uninstallable'] 0m4.6s INFO: apt-cache does not know about any of the requested packages 0m4.6s INFO: Running scripts pre_test 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_test_exceptions'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_test_root_password'] 0m4.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_test_root_password'] 0m4.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m5.5s DEBUG: No broken symlinks as far as we can find. 0m5.5s INFO: Running scripts pre_install 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_log_alternatives'] 0m5.5s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_install_log_alternatives'] 0m5.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m6.3s DEBUG: No broken symlinks as far as we can find. 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-cache', 'policy'] 0m6.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-cache', 'policy'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-cache', 'policy', 'snakemake'] 0m7.0s DUMP: snakemake: Installed: (none) Candidate: 5.4.0-1 Version table: 5.4.0-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-cache', 'policy', 'snakemake'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', '-y', 'install', 'snakemake=5.4.0-1'] 0m35.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax fonts-roboto-slab git git-man graphviz libblas3 libbsd0 libcairo2 libcdt5 libcgraph6 libcurl3-gnutls libcurl4 libdatrie1 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu63 libjbig0 libjpeg62-turbo libjs-d3 libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.4-2 libldap-common libltdl7 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre2-8-0 libperl5.28 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 lsb-base mime-support openssl perl perl-modules-5.28 python3 python3-appdirs python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-datrie python3-decorator python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-minimal python3-networkx python3-numpy python3-pkg-resources python3-psutil python3-pygraphviz python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-setuptools python3-six python3-smmap python3-urllib3 python3-wrapt python3-yaml python3.7 python3.7-minimal r-base-core readline-common sensible-utils sgml-base sphinx-rtd-theme-common ucf unzip x11-common xdg-utils xml-core zip Suggested packages: fonts-roboto gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gsfonts graphviz-doc libgd-tools gdbm-l10n krb5-doc krb5-user fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl python3-doc python3-tk python3-venv python-commonmark-bkrs-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-git-doc python-jinja2-doc python-jsonschema-doc python-networkx-doc gcc gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python-psutil-doc python-pygraphviz-doc python3-cryptography python3-openssl python3-socks python-rpy-docs python-setuptools-doc python3-nose python3.7-venv python3.7-doc binutils binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html readline-doc sgml-base-doc debhelper Recommended packages: patch less ssh-client fonts-liberation libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common krb5-locales publicsuffix libsasl2-modules bzip2 file xz-utils netbase python3-pil python3-pygments python3-gdal python3-scipy r-recommended r-base-dev r-doc-html python3-boto r-cran-rmarkdown libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax fonts-roboto-slab git git-man graphviz libblas3 libbsd0 libcairo2 libcdt5 libcgraph6 libcurl3-gnutls libcurl4 libdatrie1 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu63 libjbig0 libjpeg62-turbo libjs-d3 libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.4-2 libldap-common libltdl7 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre2-8-0 libperl5.28 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 lsb-base mime-support openssl perl perl-modules-5.28 python3 python3-appdirs python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-datrie python3-decorator python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-minimal python3-networkx python3-numpy python3-pkg-resources python3-psutil python3-pygraphviz python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-setuptools python3-six python3-smmap python3-urllib3 python3-wrapt python3-yaml python3.7 python3.7-minimal r-base-core readline-common sensible-utils sgml-base snakemake sphinx-rtd-theme-common ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 95.5 MB of archives. After this operation, 345 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:10 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:11 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:18 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:20 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:21 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get:22 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:23 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:24 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:25 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:26 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:27 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:30 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:31 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:33 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:34 http://deb.debian.org/debian buster/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB] Get:35 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get:36 http://deb.debian.org/debian buster/main amd64 fonts-roboto-slab all 1.100263+20170512-1 [207 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:40 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:41 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:48 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libpcre2-8-0 amd64 10.32-5 [213 kB] Get:52 http://deb.debian.org/debian buster/main amd64 liberror-perl all 0.17027-2 [30.9 kB] Get:53 http://deb.debian.org/debian buster/main amd64 git-man all 1:2.20.1-2+deb10u3 [1620 kB] Get:54 http://deb.debian.org/debian buster/main amd64 git amd64 1:2.20.1-2+deb10u3 [5633 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:67 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:68 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:91 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:92 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:94 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:99 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libjs-d3 all 3.5.17-2 [132 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libjs-modernizr all 2.6.2+ds1-3 [46.7 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get:112 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get:119 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:120 http://deb.debian.org/debian buster/main amd64 python3-appdirs all 1.4.3-1 [12.0 kB] Get:121 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get:122 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:123 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get:124 http://deb.debian.org/debian buster/main amd64 python3-commonmark-bkrs all 0.5.4+ds-2 [28.2 kB] Get:125 http://deb.debian.org/debian buster/main amd64 python3-configargparse all 0.13.0-1 [22.5 kB] Get:126 http://deb.debian.org/debian buster/main amd64 python3-datrie amd64 0.7.1-2 [155 kB] Get:127 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:128 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:129 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:130 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get:131 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get:132 http://deb.debian.org/debian buster/main amd64 python3-smmap all 2.0.5-1 [21.2 kB] Get:133 http://deb.debian.org/debian buster/main amd64 python3-gitdb all 2.0.5-1 [46.8 kB] Get:134 http://deb.debian.org/debian buster/main amd64 python3-git all 2.1.11-1 [304 kB] Get:135 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:136 http://deb.debian.org/debian buster/main amd64 python3-markupsafe amd64 1.1.0-1 [14.8 kB] Get:137 http://deb.debian.org/debian buster/main amd64 python3-jinja2 all 2.10-2 [106 kB] Get:138 http://deb.debian.org/debian buster/main amd64 python3-jsonschema all 2.6.0-4 [33.5 kB] Get:139 http://deb.debian.org/debian buster/main amd64 python3-networkx all 2.2-1 [818 kB] Get:140 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:141 http://deb.debian.org/debian buster/main amd64 python3-psutil amd64 5.5.1-1 [166 kB] Get:142 http://deb.debian.org/debian buster/main amd64 python3-pygraphviz amd64 1.5-1 [76.6 kB] Get:143 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:144 http://deb.debian.org/debian buster/main amd64 python3-pytools all 2019.1-1 [39.0 kB] Get:145 http://deb.debian.org/debian buster/main amd64 python3-ratelimiter amd64 1.2.0.post0-1 [5508 B] Get:146 http://deb.debian.org/debian buster/main amd64 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get:147 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get:148 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get:149 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:150 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:151 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get:152 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get:153 http://deb.debian.org/debian buster/main amd64 python3-rpy2 amd64 2.9.5-1 [167 kB] Get:154 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get:155 http://deb.debian.org/debian buster/main amd64 python3-wrapt amd64 1.10.11-1 [36.9 kB] Get:156 http://deb.debian.org/debian buster/main amd64 python3-yaml amd64 3.13-2 [121 kB] Get:157 http://deb.debian.org/debian buster/main amd64 sphinx-rtd-theme-common all 0.4.3+dfsg-1 [1021 kB] Get:158 http://deb.debian.org/debian buster/main amd64 snakemake all 5.4.0-1 [717 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.5 MB in 1s (75.0 MB/s) Selecting previously unselected package perl-modules-5.28. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6463 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.28_5.28.1-6+deb10u1_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6+deb10u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.18.1-4_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-4) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9165 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... 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Setting up libreadline7:amd64 (7.0-5) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up xml-core (0.18+nmu1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up python3-markupsafe (1.1.0-1) ... Setting up python3-psutil (5.5.1-1) ... Setting up python3-ratelimiter (1.2.0.post0-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-wrapt (1.10.11-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-datrie:amd64 (0.7.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-appdirs (1.4.3-1) ... Setting up python3-smmap (2.0.5-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up python3-configargparse (0.13.0-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up python3-setuptools (40.8.0-1) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-yaml (3.13-2) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up python3-gitdb (2.0.5-1) ... Setting up python3-networkx (2.2-1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up liberror-perl (0.17027-2) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-jsonschema (2.6.0-4) ... update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up python3-requests (2.21.0-1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up git (1:2.20.1-2+deb10u3) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python3-git (2.1.11-1) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up python3-pytools (2019.1-1) ... Setting up python3-rpy2 (2.9.5-1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up python3-pygraphviz (1.5-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-5) ... Setting up snakemake (5.4.0-1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', '-y', 'install', 'snakemake=5.4.0-1'] 0m35.3s INFO: Running scripts post_install 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_install_exceptions'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_install_exceptions'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_install_log_alternatives'] 0m35.3s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=python3-jsonschema: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/jsonschema jsonschema /usr/bin/python3-jsonschema 200 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst-buildhtml rst-buildhtml /usr/share/docutils/scripts/python3/rst-buildhtml 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2html rst2html /usr/share/docutils/scripts/python3/rst2html 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2html4 rst2html4 /usr/share/docutils/scripts/python3/rst2html4 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2html5 rst2html5 /usr/share/docutils/scripts/python3/rst2html5 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2latex rst2latex /usr/share/docutils/scripts/python3/rst2latex 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2man rst2man /usr/share/docutils/scripts/python3/rst2man 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2odt rst2odt /usr/share/docutils/scripts/python3/rst2odt 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2odt_prepstyles rst2odt_prepstyles /usr/share/docutils/scripts/python3/rst2odt_prepstyles 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2pseudoxml rst2pseudoxml /usr/share/docutils/scripts/python3/rst2pseudoxml 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2s5 rst2s5 /usr/share/docutils/scripts/python3/rst2s5 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2xetex rst2xetex /usr/share/docutils/scripts/python3/rst2xetex 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rst2xml rst2xml /usr/share/docutils/scripts/python3/rst2xml 20 LOG-ALTERNATIVES: dpkg=python3-docutils: piuparts=snakemake=5.4.0-1: /usr/bin/update-alternatives --install /usr/bin/rstpep2html rstpep2html /usr/share/docutils/scripts/python3/rstpep2html 20 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_install_log_alternatives'] 0m35.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m36.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m38.8s DEBUG: No broken symlinks as far as we can find. 0m38.9s INFO: /bin converted to /usr/bin by /usr merge 0m38.9s INFO: /lib converted to /usr/lib by /usr merge 0m38.9s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m38.9s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m38.9s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m38.9s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m38.9s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m38.9s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m38.9s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m38.9s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m38.9s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m38.9s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m38.9s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m38.9s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m38.9s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m38.9s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m38.9s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m38.9s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m38.9s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m38.9s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m38.9s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m38.9s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m38.9s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m38.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m38.9s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m38.9s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m38.9s INFO: /sbin converted to /usr/sbin by /usr merge 0m40.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', '-ac', '--ignore-obsolete'] 0m41.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', '-ac', '--ignore-obsolete'] 0m41.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.9s DUMP: 0.15.6 0m41.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.9s INFO: Running adequate version 0.15.6 now. 0m41.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'snakemake'] 0m42.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'snakemake'] 0m42.0s INFO: Running scripts pre_remove 0m42.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_exceptions'] 0m45.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/pre_remove_exceptions'] 0m45.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m46.0s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed docutils-common docutils-common 0.14+dfsg-4 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-1 install ok installed fonts-lato fonts-lato 2.0-2 install ok installed fonts-mathjax fonts-mathjax 2.7.4+dfsg-1 install ok installed fonts-roboto-slab fonts-roboto-slab 1.100263+20170512-1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed git git 1:2.20.1-2+deb10u3 install ok installed git-man git-man 1:2.20.1-2+deb10u3 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcdt5 libcdt5 2.40.1-6+deb10u1 install ok installed libcgraph6 libcgraph6 2.40.1-6+deb10u1 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libcurl4:amd64 libcurl4 7.64.0-4+deb10u2 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed liberror-perl liberror-perl 0.17027-2 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgd3:amd64 libgd3 2.2.5-5.2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-d3 libjs-d3 3.5.17-2 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-mathjax libjs-mathjax 2.7.4+dfsg-1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-3 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.8.4-1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libpaper-utils libpaper-utils 1.1.28 install ok installed libpaper1:amd64 libpaper1 1.1.28 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.32-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.9+dfsg-2 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u4 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtk8.6:amd64 libtk8.6 8.6.9-2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-appdirs python3-appdirs 1.4.3-1 install ok installed python3-certifi python3-certifi 2018.8.24-1 install ok installed python3-chardet python3-chardet 3.0.4-3 install ok installed python3-commonmark-bkrs python3-commonmark-bkrs 0.5.4+ds-2 install ok installed python3-configargparse python3-configargparse 0.13.0-1 install ok installed python3-datrie:amd64 python3-datrie 0.7.1-2 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-docutils python3-docutils 0.14+dfsg-4 install ok installed python3-git python3-git 2.1.11-1 install ok installed python3-gitdb python3-gitdb 2.0.5-1 install ok installed python3-idna python3-idna 2.6-1 install ok installed python3-jinja2 python3-jinja2 2.10-2 install ok installed python3-jsonschema python3-jsonschema 2.6.0-4 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-markupsafe python3-markupsafe 1.1.0-1 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-networkx python3-networkx 2.2-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-psutil python3-psutil 5.5.1-1 install ok installed python3-pygraphviz python3-pygraphviz 1.5-1 install ok installed python3-pytools python3-pytools 2019.1-1 install ok installed python3-ratelimiter python3-ratelimiter 1.2.0.post0-1 install ok installed python3-recommonmark python3-recommonmark 0.4.0+ds-5 install ok installed python3-requests python3-requests 2.21.0-1 install ok installed python3-roman python3-roman 2.0.0-3 install ok installed python3-rpy2 python3-rpy2 2.9.5-1 install ok installed python3-setuptools python3-setuptools 40.8.0-1 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-smmap python3-smmap 2.0.5-1 install ok installed python3-urllib3 python3-urllib3 1.24.1-1 install ok installed python3-wrapt python3-wrapt 1.10.11-1 install ok installed python3-yaml python3-yaml 3.13-2 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed r-base-core r-base-core 3.5.2-1 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sgml-base sgml-base 1.29 install ok installed snakemake snakemake 5.4.0-1 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 0.4.3+dfsg-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1+deb10u1 install ok installed xml-core xml-core 0.18+nmu1 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'remove', 'ca-certificates', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sensible-utils', 'sgml-base', 'sphinx-rtd-theme-common', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'snakemake'] 0m51.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato fonts-mathjax fonts-roboto-slab git git-man graphviz libblas3 libbsd0 libcairo2 libcdt5 libcgraph6 libcurl3-gnutls libcurl4 libdatrie1 liberror-perl libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu63 libjbig0 libjpeg62-turbo libjs-d3 libjs-jquery libjs-mathjax libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblapack3 libldap-2.4-2 libldap-common libltdl7 libmpdec2 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpcre2-8-0 libperl5.28 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxft2 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libyaml-0-2 lsb-base mime-support openssl perl perl-modules-5.28 python3 python3-appdirs python3-certifi python3-chardet python3-commonmark-bkrs python3-configargparse python3-datrie python3-decorator python3-distutils python3-docutils python3-git python3-gitdb python3-idna python3-jinja2 python3-jsonschema python3-lib2to3 python3-markupsafe python3-minimal python3-networkx python3-numpy python3-pkg-resources python3-psutil python3-pygraphviz python3-pytools python3-ratelimiter python3-recommonmark python3-requests python3-roman python3-rpy2 python3-setuptools python3-six python3-smmap python3-urllib3 python3-wrapt python3-yaml python3.7 python3.7-minimal r-base-core readline-common sensible-utils sgml-base snakemake sphinx-rtd-theme-common ucf unzip x11-common xdg-utils xml-core zip 0 upgraded, 0 newly installed, 158 to remove and 0 not upgraded. After this operation, 345 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20272 files and directories currently installed.) Removing snakemake (5.4.0-1) ... Removing python3-requests (2.21.0-1) ... Removing python3-recommonmark (0.4.0+ds-5) ... Removing python3-docutils (0.14+dfsg-4) ... Removing docutils-common (0.14+dfsg-4) ... Removing python3-rpy2 (2.9.5-1) ... Removing r-base-core (3.5.2-1) ... Removing python3-pygraphviz (1.5-1) ... Removing graphviz (2.40.1-6+deb10u1) ... Removing libgvc6 (2.40.1-6+deb10u1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libtk8.6:amd64 (8.6.9-2) ... Removing libxft2:amd64 (2.3.2-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing sphinx-rtd-theme-common (0.4.3+dfsg-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/woff/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/svg/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/eot/font-awesome' not empty so not removed Removing fonts-lato (2.0-2) ... dpkg: warning: while removing fonts-lato, directory '/usr/share/fonts/truetype/lato' not empty so not removed Removing libjs-mathjax (2.7.4+dfsg-1) ... Removing fonts-mathjax (2.7.4+dfsg-1) ... dpkg: warning: while removing fonts-mathjax, directory '/usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf' not empty so not removed dpkg: warning: while removing fonts-mathjax, directory '/usr/share/fonts/opentype' not empty so not removed Removing fonts-roboto-slab (1.100263+20170512-1) ... dpkg: warning: while removing fonts-roboto-slab, directory '/usr/share/fonts/truetype/roboto/slab' not empty so not removed Removing python3-git (2.1.11-1) ... Removing git (1:2.20.1-2+deb10u3) ... Removing git-man (1:2.20.1-2+deb10u3) ... Removing python3-pytools (2019.1-1) ... Removing python3-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libgvpr2 (2.40.1-6+deb10u1) ... Removing libcgraph6 (2.40.1-6+deb10u1) ... Removing libcdt5 (2.40.1-6+deb10u1) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libcurl4:amd64 (7.64.0-4+deb10u2) ... Removing python3-datrie:amd64 (0.7.1-2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing liberror-perl (0.17027-2) ... Removing python3-setuptools (40.8.0-1) ... Removing python3-distutils (3.7.3-1) ... Removing python3-wrapt (1.10.11-1) ... Removing python3-urllib3 (1.24.1-1) ... Removing python3-six (1.12.0-1) ... Removing python3-yaml (3.13-2) ... Removing python3-gitdb (2.0.5-1) ... Removing python3-smmap (2.0.5-1) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-d3 (3.5.17-2) ... Removing libjs-sphinxdoc (1.8.4-1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjs-modernizr (2.6.2+ds1-3) ... Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ... dpkg: warning: while removing libjs-underscore, directory '/usr/share/javascript' not empty so not removed Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libpaper-utils (1.1.28) ... Removing libpaper1:amd64 (1.1.28) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpcre2-8-0:amd64 (10.32-5) ... Removing libpixman-1-0:amd64 (0.36.0-1) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libtcl8.6:amd64 (8.6.9+dfsg-2) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u1) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Removing python3-appdirs (1.4.3-1) ... Removing python3-certifi (2018.8.24-1) ... Removing python3-chardet (3.0.4-3) ... Removing python3-commonmark-bkrs (0.5.4+ds-2) ... Removing python3-configargparse (0.13.0-1) ... Removing python3-networkx (2.2-1) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-idna (2.6-1) ... Removing python3-jinja2 (2.10-2) ... Removing python3-jsonschema (2.6.0-4) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3-markupsafe (1.1.0-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-psutil (5.5.1-1) ... Removing python3-ratelimiter (1.2.0.post0-1) ... Removing python3-roman (2.0.0-3) ... Removing xml-core (0.18+nmu1) ... Removing sgml-base (1.29) ... Removing unzip (6.0-23+deb10u2) ... Removing xdg-utils (1.1.3-1+deb10u1) ... Removing zip (3.0-11+b1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'remove', 'ca-certificates', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sensible-utils', 'sgml-base', 'sphinx-rtd-theme-common', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip', 'snakemake'] 0m51.1s INFO: Running scripts post_remove 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_remove_exceptions'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_remove_exceptions'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sensible-utils', 'sgml-base', 'sphinx-rtd-theme-common', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip'] 0m51.7s DUMP: (Reading database ... 6531 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for docutils-common (0.14+dfsg-4) ... Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-font-awesome which isn't installed dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove fonts-roboto-slab which isn't installed Purging configuration files for git (1:2.20.1-2+deb10u3) ... dpkg: warning: ignoring request to remove git-man which isn't installed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove liberror-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed Purging configuration files for libgvc6 (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.28) ... dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpcre2-8-0 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for mime-support (3.62) ... Purging configuration files for openssl (1.1.1n-0+deb10u3) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-commonmark-bkrs which isn't installed dpkg: warning: ignoring request to remove python3-configargparse which isn't installed dpkg: warning: ignoring request to remove python3-datrie which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-git which isn't installed dpkg: warning: ignoring request to remove python3-gitdb which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed Purging configuration files for python3-jsonschema (2.6.0-4) ... dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pygraphviz which isn't installed dpkg: warning: ignoring request to remove python3-pytools which isn't installed dpkg: warning: ignoring request to remove python3-ratelimiter which isn't installed dpkg: warning: ignoring request to remove python3-recommonmark which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-rpy2 which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-smmap which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... Purging configuration files for r-base-core (3.5.2-1) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.29) ... dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove xdg-utils which isn't installed Purging configuration files for xml-core (0.18+nmu1) ... dpkg: warning: ignoring request to remove zip which isn't installed 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--purge', 'ca-certificates', 'docutils-common', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-font-awesome', 'fonts-lato', 'fonts-mathjax', 'fonts-roboto-slab', 'git', 'git-man', 'graphviz', 'libblas3:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdt5', 'libcgraph6', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libice6:amd64', 'libicu63:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-d3', 'libjs-jquery', 'libjs-mathjax', 'libjs-modernizr', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libltdl7:amd64', 'libmpdec2:amd64', 'libnghttp2-14:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpathplan4', 'libpcre2-8-0:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtk8.6:amd64', 'libwebp6:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxft2:amd64', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'openssl', 'perl', 'perl-modules-5.28', 'python3', 'python3-appdirs', 'python3-certifi', 'python3-chardet', 'python3-commonmark-bkrs', 'python3-configargparse', 'python3-datrie:amd64', 'python3-decorator', 'python3-distutils', 'python3-docutils', 'python3-git', 'python3-gitdb', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pkg-resources', 'python3-psutil', 'python3-pygraphviz', 'python3-pytools', 'python3-ratelimiter', 'python3-recommonmark', 'python3-requests', 'python3-roman', 'python3-rpy2', 'python3-setuptools', 'python3-six', 'python3-smmap', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3.7', 'python3.7-minimal', 'r-base-core', 'readline-common', 'sensible-utils', 'sgml-base', 'sphinx-rtd-theme-common', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xml-core', 'zip'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--purge', 'snakemake'] 0m51.7s DUMP: dpkg: warning: ignoring request to remove snakemake which isn't installed 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--purge', 'snakemake'] 0m51.7s INFO: Running scripts post_purge 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_purge_exceptions'] 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_purge_exceptions'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--purge', '--pending'] 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--purge', '--pending'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--remove', '--pending'] 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg', '--remove', '--pending'] 0m51.7s INFO: Running scripts post_test 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_test_exceptions'] 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'tmp/scripts/post_test_exceptions'] 0m51.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m52.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m52.5s DEBUG: No broken symlinks as far as we can find. 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-divert', '--list'] 0m52.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'dpkg-divert', '--list'] 0m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'clean'] 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpcwsarhci', 'apt-get', 'clean'] 0m52.6s DEBUG: Recording chroot state 0m53.1s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-roboto-slab, fonts-mathjax, fonts-font-awesome, fonts-dejavu-core, fonts-lato /usr/share/fonts/.uuid not owned /usr/share/fonts/eot/ owned by: fonts-font-awesome /usr/share/fonts/eot/.uuid not owned /usr/share/fonts/eot/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/eot/font-awesome/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/svg/ owned by: fonts-font-awesome /usr/share/fonts/svg/.uuid not owned /usr/share/fonts/svg/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/svg/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-roboto-slab, fonts-font-awesome, fonts-dejavu-core, fonts-lato /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/lato/ owned by: fonts-lato /usr/share/fonts/truetype/lato/.uuid not owned /usr/share/fonts/truetype/roboto/ owned by: fonts-roboto-slab /usr/share/fonts/truetype/roboto/.uuid not owned /usr/share/fonts/truetype/roboto/slab/ owned by: fonts-roboto-slab /usr/share/fonts/truetype/roboto/slab/.uuid not owned /usr/share/fonts/woff/ owned by: fonts-font-awesome /usr/share/fonts/woff/.uuid not owned /usr/share/fonts/woff/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/woff/font-awesome/.uuid not owned /usr/share/javascript/ owned by: libjs-sphinxdoc, libjs-underscore, libjs-modernizr, libjs-mathjax, libjs-jquery, libjs-d3, fonts-mathjax, fonts-font-awesome /usr/share/javascript/mathjax/ owned by: libjs-mathjax, fonts-mathjax /usr/share/javascript/mathjax/fonts/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/ owned by: fonts-mathjax /usr/share/javascript/mathjax/fonts/HTML-CSS/TeX/otf/.uuid not owned 0m53.1s INFO: PASS: Installation and purging test. 0m53.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/shm'] 0m53.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/shm'] 0m53.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/console'] 0m53.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/console'] 0m53.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/ptmx'] 0m53.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/ptmx'] 0m53.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/pts'] 0m53.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/dev/pts'] 0m53.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/proc'] 0m53.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpcwsarhci/proc'] 0m53.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m53.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpcwsarhci'] 0m53.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpcwsarhci 0m53.6s INFO: PASS: All tests. 0m53.6s INFO: piuparts run ends. ret=0 End: 2024-01-28 15:38:17 GMT