Start: 2024-02-01 17:15:27 GMT Package: unicycler Version: 0.4.7+dfsg-2 Installed-Size: 3429 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (>= 3~), python3:any, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 6), zlib1g (>= 1:1.1.4), python3-setuptools, default-jre, bowtie2, ncbi-blast+, pilon, racon, samtools, spades Recommends: unicycler-data Description: hybrid assembly pipeline for bacterial genomes Homepage: https://github.com/rrwick/Unicycler Description-md5: 0f68c8d94a4296faee946873e441867a Section: science Priority: optional Filename: pool/main/u/unicycler/unicycler_0.4.7+dfsg-2_amd64.deb Size: 872732 MD5sum: a29b75113bb9a2c15868ad3eb62b3895 SHA256: 2243d371babaf5a76e94682ed1e0bf113254563c9c5147eefacdbb94b6677853 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt unicycler=0.4.7+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz -d buster --no-upgrade-test --apt unicycler=0.4.7+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_gs3i3za 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_gs3i3za 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m2.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/buster-merged-usr_amd64.tar.gz'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/proc'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/proc'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/pts'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/pts'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp_gs3i3za/tmp/scripts/ 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_gs3i3za/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'update'] 0m3.4s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_dummy_users'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'clean'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'clean'] 0m5.1s DEBUG: Recording chroot state 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-divert', '--list'] 0m5.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-divert', '--list'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: apt-cache does not know about any of the requested packages 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 0m7.2s DEBUG: No broken symlinks as far as we can find. 0m7.2s INFO: Running scripts pre_install 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_log_alternatives'] 0m7.2s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_install_log_alternatives'] 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 0m7.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 0m8.4s DEBUG: No broken symlinks as far as we can find. 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-cache', 'policy'] 0m9.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-cache', 'policy'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-cache', 'policy', 'unicycler'] 0m9.5s DUMP: unicycler: Installed: (none) Candidate: 0.4.7+dfsg-2 Version table: 0.4.7+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-cache', 'policy', 'unicycler'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', '-y', 'install', 'unicycler=0.4.7+dfsg-2'] 0m46.4s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ant ant-optional bamtools bowtie2 bwa ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libedlib0 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts2 libhtsjdk-java libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjpeg62-turbo libjsoncpp1 libjsoup-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblmdb0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libncurses6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.28 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps7 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline7 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-guice-java libsisu-inject-java libsisu-ioc-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa1.1.5 libsqlite3-0 libssh2-1 libssl1.1 libssw0 libstax-ex-java libstreambuffer-java libtbb2 libthread-pool0 libtxw2-java libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 lsb-base mime-support ncbi-blast+ ncbi-data openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.28 pilon procps python python-joblib python-minimal python-yaml python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.7 python3.7-minimal racon readline-common samtools scala-library sensible-utils spades ucf unzip x11-common Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java bowtie2-examples libaopalliance-java-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libservlet3.1-java libcommons-io-java-doc libcommons-jexl2-java-doc libcommons-lang-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java libdtd-parser-java-doc gdbm-l10n krb5-doc krb5-user libasm-java libcglib-java picard-tools libjdom1-java libxom-java libjsoup-java-doc libjsr305-java-doc liblcms2-utils libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java pciutils pcscd libplexus-cipher-java-doc libplexus-classworlds-java-doc libplexus-interpolation-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc lm-sensors testng libosgi-compendium-java libosgi-core-java libxml-commons-resolver1.1-java-doc libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libb-debug-perl liblocale-codes-perl python-doc python-tk python2-doc python2.7-doc binutils binfmt-support python3-doc python3-tk python3-venv python-setuptools-doc python3.7-venv python3.7-doc readline-doc zip Recommended packages: dbus libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libjansi-java libgpm2 publicsuffix libsasl2-modules libasm-java libcglib-java bzip2 file xz-utils libatk-wrapper-java-jni fonts-dejavu-extra netbase psmisc python-numpy python-pytest python-simplejson python-lz4 python-psutil cwltool unicycler-data The following NEW packages will be installed: ant ant-optional bamtools bowtie2 bwa ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libedlib0 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts2 libhtsjdk-java libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjpeg62-turbo libjsoncpp1 libjsoup-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblmdb0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libncurses6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.28 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps7 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline7 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-guice-java libsisu-inject-java libsisu-ioc-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa1.1.5 libsqlite3-0 libssh2-1 libssl1.1 libssw0 libstax-ex-java libstreambuffer-java libtbb2 libthread-pool0 libtxw2-java libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 lsb-base mime-support ncbi-blast+ ncbi-data openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.28 pilon procps python python-joblib python-minimal python-yaml python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.7 python3.7-minimal racon readline-common samtools scala-library sensible-utils spades ucf unicycler unzip x11-common 0 upgraded, 223 newly installed, 0 to remove and 0 not upgraded. Need to get 146 MB of archives. After this operation, 672 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:7 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:8 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:9 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:11 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:13 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get:23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get:24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:32 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:33 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:34 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:35 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:36 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:37 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:40 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get:41 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get:43 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:47 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:48 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:49 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:50 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:51 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u6 [325 kB] Get:52 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:56 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:57 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:63 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get:65 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.16+8-1~deb10u1 [37.3 MB] Get:66 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get:67 http://deb.debian.org/debian buster/main amd64 ant all 1.10.5-2 [2082 kB] Get:68 http://deb.debian.org/debian buster/main amd64 ant-optional all 1.10.5-2 [379 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-3 [154 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:71 http://deb.debian.org/debian buster/main amd64 bamtools amd64 2.5.1+dfsg-3 [171 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libatomic1 amd64 8.3.0-6 [9032 B] Get:73 http://deb.debian.org/debian buster/main amd64 libtbb2 amd64 2018~U6-4 [147 kB] Get:74 http://deb.debian.org/debian buster/main amd64 bowtie2 amd64 2.3.4.3-1 [1188 kB] Get:75 http://deb.debian.org/debian buster/main amd64 bwa amd64 0.7.17-3 [195 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:78 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:79 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:80 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:96 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:101 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get:105 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:110 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:114 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:116 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.16+8-1~deb10u1 [174 kB] Get:117 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get:118 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get:119 http://deb.debian.org/debian buster/main amd64 java-wrappers all 0.3 [10.9 kB] Get:120 http://deb.debian.org/debian buster/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:122 http://deb.debian.org/debian buster/main amd64 libapache-pom-java all 18-1 [4676 B] Get:123 http://deb.debian.org/debian buster/main amd64 libargs4j-java all 2.33-1 [139 kB] Get:124 http://deb.debian.org/debian buster/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:125 http://deb.debian.org/debian buster/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:126 http://deb.debian.org/debian buster/main amd64 libcdi-api-java all 1.2-2 [54.5 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libdom4j-java all 2.1.1-2 [310 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libcommons-io-java all 2.6-2+deb10u1 [213 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libmaven-shared-utils-java all 3.3.0-1 [149 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libcommons-cli-java all 1.4-1 [55.2 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libcommons-lang3-java all 3.8-2 [478 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB] Get:135 http://deb.debian.org/debian buster/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libguava-java all 19.0-1 [2028 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libguice-java all 4.2.1-1 [962 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:139 http://deb.debian.org/debian buster/main amd64 libplexus-utils2-java all 3.1.1-1 [249 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libwagon-provider-api-java all 3.3.1-2 [50.1 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libmaven-resolver-java all 1.3.1-1 [549 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libplexus-cipher-java all 1.7-3 [15.0 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libplexus-component-annotations-java all 1.7.1-7 [7536 B] Get:145 http://deb.debian.org/debian buster/main amd64 libplexus-interpolation-java all 1.25-1 [76.8 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libslf4j-java all 1.7.25-3 [143 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libsisu-inject-java all 0.3.3-1 [347 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libsisu-plexus-java all 0.3.3-3 [182 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libmaven3-core-java all 3.6.0-1 [1465 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:152 http://deb.debian.org/debian buster/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libcommons-compress-java all 1.18-2+deb10u1 [531 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libplexus-io-java all 3.1.1-1 [64.6 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libsnappy1v5 amd64 1.1.7-1 [17.0 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libsnappy-jni amd64 1.1.7.2-1 [7148 B] Get:157 http://deb.debian.org/debian buster/main amd64 libsnappy-java all 1.1.7.2-1 [73.7 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libxz-java all 1.8-2 [141 kB] Get:159 http://deb.debian.org/debian buster/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:160 http://deb.debian.org/debian buster/main amd64 libsisu-guice-java all 4.2.0-1 [785 kB] Get:161 http://deb.debian.org/debian buster/main amd64 libsisu-ioc-java all 2.3.0-11 [492 kB] Get:162 http://deb.debian.org/debian buster/main amd64 libhttpcore-java all 4.4.11-1 [625 kB] Get:163 http://deb.debian.org/debian buster/main amd64 libcommons-codec-java all 1.11-1 [271 kB] Get:164 http://deb.debian.org/debian buster/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libhttpclient-java all 4.5.7-1+deb10u1 [721 kB] Get:166 http://deb.debian.org/debian buster/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:167 http://deb.debian.org/debian buster/main amd64 libwagon-http-java all 3.3.1-2 [50.5 kB] Get:168 http://deb.debian.org/debian buster/main amd64 libistack-commons-java all 3.0.6-3 [144 kB] Get:169 http://deb.debian.org/debian buster/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-8 [163 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libcommons-jexl2-java all 2.1.1-4 [257 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libcommons-lang-java all 2.6-8 [273 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u2 [69.2 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u2 [106 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u7 [90.1 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u7 [224 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get:177 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:178 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get:182 http://deb.debian.org/debian buster/main amd64 libdtd-parser-java all 1.2~svn20110404-1 [62.5 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libedlib0 amd64 1.2.4-1 [16.1 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:186 http://deb.debian.org/debian buster/main amd64 libstreambuffer-java all 1.5.4-1 [71.8 kB] Get:187 http://deb.debian.org/debian buster/main amd64 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:188 http://deb.debian.org/debian buster/main amd64 libxsom-java all 2.3.0.1-8 [396 kB] Get:189 http://deb.debian.org/debian buster/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:190 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:191 http://deb.debian.org/debian buster/main amd64 libhat-trie0 amd64 0.1.2-2 [11.8 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get:193 http://deb.debian.org/debian buster/main amd64 librngom-java all 2.3.0.1-8 [288 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libtxw2-java all 2.3.0.1-8 [134 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libjaxb-java all 2.3.0.1-8 [1966 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libngs-sdk2 amd64 2.9.3-1 [62.7 kB] Get:198 http://deb.debian.org/debian buster/main amd64 libngs-sdk-dev amd64 2.9.3-1 [111 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libngs-java amd64 2.9.3-1 [79.9 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libhtsjdk-java all 2.18.2+dfsg-2 [1499 kB] Get:201 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:202 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:203 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:204 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:205 http://deb.debian.org/debian buster/main amd64 libnlopt0 amd64 2.4.2+dfsg-8+b1 [165 kB] Get:206 http://deb.debian.org/debian buster/main amd64 libspoa1.1.5 amd64 1.1.5-1 [29.3 kB] Get:207 http://deb.debian.org/debian buster/main amd64 libssw0 amd64 1.1-2 [16.5 kB] Get:208 http://deb.debian.org/debian buster/main amd64 libthread-pool0 amd64 1.0.0-2 [8532 B] Get:209 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:210 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:211 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:212 http://deb.debian.org/debian buster/main amd64 scala-library all 2.11.12-4 [9589 kB] Get:213 http://deb.debian.org/debian buster/main amd64 pilon all 1.23+dfsg-1 [421 kB] Get:214 http://deb.debian.org/debian buster/main amd64 python-joblib all 0.13.0-2 [190 kB] Get:215 http://deb.debian.org/debian buster/main amd64 python-yaml amd64 3.13-2 [127 kB] Get:216 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get:217 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get:218 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:219 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get:220 http://deb.debian.org/debian buster/main amd64 racon amd64 1.3.2-1+b1 [52.9 kB] Get:221 http://deb.debian.org/debian buster/main amd64 samtools amd64 1.9-4 [443 kB] Get:222 http://deb.debian.org/debian buster/main amd64 spades amd64 3.13.0+dfsg2-2 [4755 kB] Get:223 http://deb.debian.org/debian buster/main amd64 unicycler amd64 0.4.7+dfsg-2 [873 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 146 MB in 2s (68.0 MB/s) Selecting previously unselected package perl-modules-5.28. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6463 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.28_5.28.1-6+deb10u1_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6+deb10u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-4_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-4) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package python-minimal. Preparing to unpack .../08-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../09-libssl1.1_1.1.1n-0+deb10u3_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../10-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../11-libexpat1_2.2.6-2+deb10u4_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u4) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../13-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9246 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9279 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libpython3.7-minimal:amd64. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u4) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9533 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... 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Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libngs-sdk2 (2.9.3-1) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up scala-library (2.11.12-4) ... Setting up libnlopt0:amd64 (2.4.2+dfsg-8+b1) ... Setting up libplexus-component-annotations-java (1.7.1-7) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u7) ... Setting up libplexus-cipher-java (1.7-3) ... Setting up libsnappy1v5:amd64 (1.1.7-1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Setting up libgeronimo-annotation-1.3-spec-java (1.0-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... 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Setting up librelaxng-datatype-java (1.0+ds1-3) ... Setting up openssl (1.1.1n-0+deb10u3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libdrm-common (2.4.97-1) ... Setting up libcdi-api-java (1.2-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libsnappy-jni (1.1.7.2-1) ... Setting up libssw0:amd64 (1.1-2) ... Setting up readline-common (7.0-5) ... Setting up libargs4j-java (2.33-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libdom4j-java (2.1.1-2) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libwagon-provider-api-java (3.3.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up java-wrappers (0.3) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libtbb2:amd64 (2018~U6-4) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up libcommons-lang-java (2.6-8) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libcommons-jexl2-java (2.1.1-4) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libmaven-resolver-java (1.3.1-1) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libguava-java (19.0-1) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up racon (1.3.2-1+b1) ... Setting up libstreambuffer-java (1.5.4-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up ucf (3.0038+nmu1) ... Setting up libcommons-lang3-java (3.8-2) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up librngom-java (2.3.0.1-8) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up libsisu-guice-java (4.2.0-1) ... Setting up bamtools (2.5.1+dfsg-3) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsnappy-java (1.1.7.2-1) ... Setting up libxsom-java (2.3.0.1-8) ... Setting up libcommons-codec-java (1.11-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.18-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libcommons-io-java (2.6-2+deb10u1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libsisu-ioc-java (2.3.0-11) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up python3 (3.7.3-1) ... Setting up python2 (2.7.16-1) ... Setting up libguice-java (4.2.1-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u6) ... Setting up libhttpclient-java (4.5.7-1+deb10u1) ... Setting up libwagon-http-java (3.3.1-2) ... Setting up libmaven-shared-utils-java (3.3.0-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up libplexus-io-java (3.1.1-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up python3-setuptools (40.8.0-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libsisu-inject-java (0.3.3-1) ... Setting up samtools (1.9-4) ... Setting up bowtie2 (2.3.4.3-1) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up libsisu-plexus-java (0.3.3-3) ... Setting up python-joblib (0.13.0-2) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up python-yaml (3.13-2) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libmaven3-core-java (3.6.0-1) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up spades (3.13.0+dfsg2-2) ... Setting up default-jre-headless (2:1.11-71) ... Setting up openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.16+8-1~deb10u1) ... Setting up default-jre (2:1.11-71) ... Setting up ant (1.10.5-2) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up ant-optional (1.10.5-2) ... Setting up libistack-commons-java (3.0.6-3) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-8) ... Setting up libtxw2-java (2.3.0.1-8) ... Setting up libjaxb-java (2.3.0.1-8) ... Setting up libhtsjdk-java (2.18.2+dfsg-2) ... Setting up pilon (1.23+dfsg-1) ... Setting up unicycler (0.4.7+dfsg-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', '-y', 'install', 'unicycler=0.4.7+dfsg-2'] 0m46.4s INFO: Running scripts post_install 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_install_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_install_exceptions'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_install_log_alternatives'] 0m46.4s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --auto /usr/bin/python LOG-ALTERNATIVES: dpkg=python: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --remove python /usr/bin/python1.5 LOG-ALTERNATIVES: dpkg=python: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --remove python /usr/bin/python2.1 LOG-ALTERNATIVES: dpkg=python: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --remove python /usr/bin/python2.2 LOG-ALTERNATIVES: dpkg=python3: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=procps: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/w w /usr/bin/w.procps 50 --slave /usr/share/man/man1/w.1.gz w.1.gz /usr/share/man/man1/w.procps.1.gz LOG-ALTERNATIVES: dpkg=perl: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-11-openjdk-amd64/bin/java 1111 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/jjs jjs /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs 1111 --slave /usr/share/man/man1/jjs.1.gz jjs.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/jjs.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool 1111 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/rmid rmid /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid 1111 --slave /usr/share/man/man1/rmid.1.gz rmid.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/rmid.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry 1111 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/pack200 pack200 /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 1111 --slave /usr/share/man/man1/pack200.1.gz pack200.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/pack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/unpack200 unpack200 /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 1111 --slave /usr/share/man/man1/unpack200.1.gz unpack200.1.gz /usr/lib/jvm/java-11-openjdk-amd64/man/man1/unpack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-11-jre-headless: piuparts=unicycler=0.4.7+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec 1111 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-11-openjdk-amd64/lib/jar.binfmt 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_install_log_alternatives'] 0m46.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 0m47.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 0m49.2s ERROR: WARN: Broken symlinks: /usr/lib/jvm/java-11-openjdk-amd64/lib/libatk-wrapper.so -> ../../../x86_64-linux-gnu/jni/libatk-wrapper.so (openjdk-11-jre:amd64) /usr/lib/jvm/java-11-openjdk-amd64/lib/security/blacklisted.certs -> /etc/java-11-openjdk/security/blacklisted.certs (openjdk-11-jre-headless:amd64) 0m49.2s INFO: /bin converted to /usr/bin by /usr merge 0m49.3s INFO: /lib converted to /usr/lib by /usr merge 0m49.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m49.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m49.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m49.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m49.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m49.3s INFO: /lib/terminfo converted to /usr/lib/terminfo by /usr merge 0m49.3s INFO: /lib/terminfo/E converted to /usr/lib/terminfo/E by /usr merge 0m49.3s INFO: /lib/terminfo/a converted to /usr/lib/terminfo/a by /usr merge 0m49.3s INFO: /lib/terminfo/c converted to /usr/lib/terminfo/c by /usr merge 0m49.3s INFO: /lib/terminfo/d converted to /usr/lib/terminfo/d by /usr merge 0m49.3s INFO: /lib/terminfo/h converted to /usr/lib/terminfo/h by /usr merge 0m49.3s INFO: /lib/terminfo/l converted to /usr/lib/terminfo/l by /usr merge 0m49.3s INFO: /lib/terminfo/m converted to /usr/lib/terminfo/m by /usr merge 0m49.3s INFO: /lib/terminfo/p converted to /usr/lib/terminfo/p by /usr merge 0m49.3s INFO: /lib/terminfo/r converted to /usr/lib/terminfo/r by /usr merge 0m49.3s INFO: /lib/terminfo/s converted to /usr/lib/terminfo/s by /usr merge 0m49.3s INFO: /lib/terminfo/v converted to /usr/lib/terminfo/v by /usr merge 0m49.3s INFO: /lib/terminfo/w converted to /usr/lib/terminfo/w by /usr merge 0m49.3s INFO: /lib/terminfo/x converted to /usr/lib/terminfo/x by /usr merge 0m49.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m49.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m49.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m49.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m49.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m49.3s INFO: /sbin converted to /usr/sbin by /usr merge 0m50.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', '-ac', '--ignore-obsolete'] 0m53.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', '-ac', '--ignore-obsolete'] 0m53.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m53.3s DUMP: 0.15.6 0m53.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m53.3s INFO: Running adequate version 0.15.6 now. 0m53.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'unicycler'] 0m53.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'unicycler'] 0m53.5s INFO: Running scripts pre_remove 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m58.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m58.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m58.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m58.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_exceptions'] 0m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/pre_remove_exceptions'] 0m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m59.0s DUMP: install ok installed adduser adduser 3.118 install ok installed ant ant 1.10.5-2 install ok installed ant-optional ant-optional 1.10.5-2 install ok installed apt apt 1.8.2.3 install ok installed bamtools bamtools 2.5.1+dfsg-3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bowtie2 bowtie2 2.3.4.3-1 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed bwa bwa 0.7.17-3 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed ca-certificates-java ca-certificates-java 20190405 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed default-jre default-jre 2:1.11-71 install ok installed default-jre-headless default-jre-headless 2:1.11-71 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed java-common java-common 0.71 install ok installed java-wrappers java-wrappers 0.3 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libactivation-java libactivation-java 1.2.0-2 install ok installed libaopalliance-java libaopalliance-java 20070526-6 install ok installed libapache-pom-java libapache-pom-java 18-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libargs4j-java libargs4j-java 2.33-1 install ok installed libasound2:amd64 libasound2 1.1.8-1 install ok installed libasound2-data libasound2-data 1.1.8-1 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatomic1:amd64 libatomic1 8.3.0-6 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libavahi-client3:amd64 libavahi-client3 0.7-4+deb10u1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.7-4+deb10u1 install ok installed libavahi-common3:amd64 libavahi-common3 0.7-4+deb10u1 install ok installed libbamtools2.5.1:amd64 libbamtools2.5.1 2.5.1+dfsg-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcdi-api-java libcdi-api-java 1.2-2 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-8 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libcommons-cli-java libcommons-cli-java 1.4-1 install ok installed libcommons-codec-java libcommons-codec-java 1.11-1 install ok installed libcommons-compress-java libcommons-compress-java 1.18-2+deb10u1 install ok installed libcommons-io-java libcommons-io-java 2.6-2+deb10u1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-4 install ok installed libcommons-lang-java libcommons-lang-java 2.6-8 install ok installed libcommons-lang3-java libcommons-lang3-java 3.8-2 install ok installed libcommons-logging-java libcommons-logging-java 1.2-2 install ok installed libcommons-parent-java libcommons-parent-java 43-1 install ok installed libcups2:amd64 libcups2 2.2.10-6+deb10u6 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 7.64.0-4+deb10u2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.20-0+deb10u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdeflate0:amd64 libdeflate0 1.2-1 install ok installed libdom4j-java libdom4j-java 2.1.1-2 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.97-1 install ok installed libdrm-common libdrm-common 2.4.97-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.97-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.97-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.97-1 install ok installed libdrm2:amd64 libdrm2 2.4.97-1 install ok installed libdtd-parser-java libdtd-parser-java 1.2~svn20110404-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libedlib0 libedlib0 1.2.4-1 install ok installed libelf1:amd64 libelf1 0.176-1.1 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u4 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.0-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgif7:amd64 libgif7 5.1.4-3 install ok installed libgl1:amd64 libgl1 1.1.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 18.3.6-2+deb10u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.3.6-2+deb10u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u3 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.3.6-2+deb10u1 install ok installed libglx0:amd64 libglx0 1.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u4 install ok installed libguava-java libguava-java 19.0-1 install ok installed libguice-java libguice-java 4.2.1-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhat-trie0:amd64 libhat-trie0 0.1.2-2 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhts2:amd64 libhts2 1.9-12~deb10u1 install ok installed libhtsjdk-java libhtsjdk-java 2.18.2+dfsg-2 install ok installed libhttpclient-java libhttpclient-java 4.5.7-1+deb10u1 install ok installed libhttpcore-java libhttpcore-java 4.4.11-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libistack-commons-java libistack-commons-java 3.0.6-3 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-8 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjsoncpp1:amd64 libjsoncpp1 1.7.4-3 install ok installed libjsoup-java libjsoup-java 1.10.2-2 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u4 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.47+dfsg-3+deb10u7 install ok installed libldap-common libldap-common 2.4.47+dfsg-3+deb10u7 install ok installed libllvm7:amd64 libllvm7 1:7.0.1-8+deb10u2 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-parent-java libmaven-parent-java 31-2 install ok installed libmaven-resolver-java libmaven-resolver-java 1.3.1-1 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-3 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.0-1 install ok installed libmaven3-core-java libmaven3-core-java 3.6.0-1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.0-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.0-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.0-1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libncurses6:amd64 libncurses6 6.1+20181013-2+deb10u2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.36.0-2+deb10u1 install ok installed libngs-java libngs-java 2.9.3-1 install ok installed libngs-sdk-dev libngs-sdk-dev 2.9.3-1 install ok installed libngs-sdk2 libngs-sdk2 2.9.3-1 install ok installed libnlopt0:amd64 libnlopt0 2.4.2+dfsg-8+b1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u5 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.24-1 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libplexus-archiver-java libplexus-archiver-java 3.6.0-2 install ok installed libplexus-cipher-java libplexus-cipher-java 1.7-3 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.6.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 1.7.1-7 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.25-1 install ok installed libplexus-io-java libplexus-io-java 3.1.1-1 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 1.4-4 install ok installed libplexus-utils2-java libplexus-utils2-java 3.1.1-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libprocps7:amd64 libprocps7 2:3.3.15-2 install ok installed libpsl5:amd64 libpsl5 0.20.2-2 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u1 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u3 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u3 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3 install ok installed librngom-java librngom-java 2.3.0.1-8 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27+dfsg-1+deb10u2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27+dfsg-1+deb10u2 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsensors-config libsensors-config 1:3.5.0-3 install ok installed libsensors5:amd64 libsensors5 1:3.5.0-3 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsisu-guice-java libsisu-guice-java 4.2.0-1 install ok installed libsisu-inject-java libsisu-inject-java 0.3.3-1 install ok installed libsisu-ioc-java libsisu-ioc-java 2.3.0-11 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.3-3 install ok installed libslf4j-java libslf4j-java 1.7.25-3 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsnappy-java libsnappy-java 1.1.7.2-1 install ok installed libsnappy-jni libsnappy-jni 1.1.7.2-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.7-1 install ok installed libspoa1.1.5 libspoa1.1.5 1.1.5-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2.1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u3 install ok installed libssw0:amd64 libssw0 1.1-2 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtbb2:amd64 libtbb2 2018~U6-4 install ok installed libthread-pool0 libthread-pool0 1.0.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libtxw2-java libtxw2-java 2.3.0.1-8 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwagon-http-java libwagon-http-java 3.3.1-2 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.3.1-2 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u2 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.7-1+deb10u2 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.13.1-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.13.1-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.13.1-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.13.1-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-3+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-9 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxsom-java libxsom-java 2.3.0.1-8 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxz-java libxz-java 1.8-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.1-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.16+8-1~deb10u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.16+8-1~deb10u1 install ok installed openssl openssl 1.1.1n-0+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed pilon pilon 1.23+dfsg-1 install ok installed procps procps 2:3.3.15-2 install ok installed python python 2.7.16-1 install ok installed python-joblib python-joblib 0.13.0-2 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python-yaml python-yaml 3.13-2 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u1 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u1 install ok installed python3 python3 3.7.3-1 install ok installed python3-distutils python3-distutils 3.7.3-1 install ok installed python3-lib2to3 python3-lib2to3 3.7.3-1 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-setuptools python3-setuptools 40.8.0-1 install ok installed python3.7 python3.7 3.7.3-2+deb10u3 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u3 install ok installed racon racon 1.3.2-1+b1 install ok installed readline-common readline-common 7.0-5 install ok installed samtools samtools 1.9-4 install ok installed scala-library scala-library 2.11.12-4 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed spades spades 3.13.0+dfsg2-2 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed ucf ucf 3.0038+nmu1 install ok installed unicycler unicycler 0.4.7+dfsg-2 install ok installed unzip unzip 6.0-23+deb10u2 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'remove', 'ant', 'ant-optional', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbsd0:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libelf1:amd64', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec2:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk2', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libprocps7:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa1.1.5', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthread-pool0', 'libtxw2-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'pilon', 'procps', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-distutils', 'python3-lib2to3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.7', 'python3.7-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'spades', 'ucf', 'unzip', 'x11-common', 'unicycler'] 1m2.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ant ant-optional bamtools bowtie2 bwa ca-certificates ca-certificates-java default-jre default-jre-headless fontconfig-config fonts-dejavu-core java-common java-wrappers libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libedlib0 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgssapi-krb5-2 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts2 libhtsjdk-java libhttpclient-java libhttpcore-java libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjpeg62-turbo libjsoncpp1 libjsoup-java libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common libllvm7 liblmdb0 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libncurses6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.28 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps7 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline7 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-guice-java libsisu-inject-java libsisu-ioc-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa1.1.5 libsqlite3-0 libssh2-1 libssl1.1 libssw0 libstax-ex-java libstreambuffer-java libtbb2 libthread-pool0 libtxw2-java libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 lsb-base mime-support ncbi-blast+ ncbi-data openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.28 pilon procps python python-joblib python-minimal python-yaml python2 python2-minimal python2.7 python2.7-minimal python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-setuptools python3.7 python3.7-minimal racon readline-common samtools scala-library sensible-utils spades ucf unicycler unzip x11-common 0 upgraded, 0 newly installed, 223 to remove and 0 not upgraded. After this operation, 672 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15397 files and directories currently installed.) Removing unicycler (0.4.7+dfsg-2) ... Removing pilon (1.23+dfsg-1) ... Removing libhtsjdk-java (2.18.2+dfsg-2) ... Removing libjaxb-java (2.3.0.1-8) ... Removing libtxw2-java (2.3.0.1-8) ... Removing spades (3.13.0+dfsg2-2) ... Removing bamtools (2.5.1+dfsg-3) ... Removing bowtie2 (2.3.4.3-1) ... Removing bwa (0.7.17-3) ... Removing default-jre (2:1.11-71) ... Removing openjdk-11-jre:amd64 (11.0.16+8-1~deb10u1) ... Removing default-jre-headless (2:1.11-71) ... Removing java-wrappers (0.3) ... Removing libfastinfoset-java (1.2.12-3) ... Removing libstreambuffer-java (1.5.4-1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libcommons-lang-java (2.6-8) ... Removing libcommons-jexl2-java (2.1.1-4) ... Removing libtbb2:amd64 (2018~U6-4) ... Removing libatomic1:amd64 (8.3.0-6) ... Removing libbamtools2.5.1:amd64 (2.5.1+dfsg-3) ... Removing libgl1:amd64 (1.1.0-1) ... Removing libglx0:amd64 (1.1.0-1) ... Removing libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing samtools (1.9-4) ... Removing libhts2:amd64 (1.9-12~deb10u1) ... Removing libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Removing libdeflate0:amd64 (1.2-1) ... Removing libdrm-amdgpu1:amd64 (2.4.97-1) ... Removing libdrm-radeon1:amd64 (2.4.97-1) ... Removing libdrm-nouveau2:amd64 (2.4.97-1) ... Removing libdrm-intel1:amd64 (2.4.97-1) ... Removing libdtd-parser-java (1.2~svn20110404-1) ... Removing racon (1.3.2-1+b1) ... Removing libedlib0 (1.2.4-1) ... Removing libelf1:amd64 (0.176-1.1) ... Removing python3-setuptools (40.8.0-1) ... Removing python3-distutils (3.7.3-1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-lib2to3 (3.7.3-1) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u3) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u3) ... Removing python-yaml (3.13-2) ... Removing python-joblib (0.13.0-2) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing libgif7:amd64 (5.1.4-3) ... Removing libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Removing libglvnd0:amd64 (1.1.0-1) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing libhat-trie0:amd64 (0.1.2-2) ... Removing libjsoncpp1:amd64 (1.7.4-3) ... Removing libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u7) ... Removing libldap-common (2.4.47+dfsg-3+deb10u7) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing libmbedtls12:amd64 (2.16.0-1) ... Removing libmbedx509-0:amd64 (2.16.0-1) ... Removing libmbedcrypto3:amd64 (2.16.0-1) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing procps (2:3.3.15-2) ... Removing libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Removing libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Removing libngs-java (2.9.3-1) ... Removing libngs-sdk-dev (2.9.3-1) ... Removing libngs-sdk2 (2.9.3-1) ... Removing libnlopt0:amd64 (2.4.2+dfsg-8+b1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libprocps7:amd64 (2:3.3.15-2) ... Removing libpsl5:amd64 (0.20.2-2) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... find: '/usr/lib/python3': No such file or directory Removing libxsom-java (2.3.0.1-8) ... Removing librngom-java (2.3.0.1-8) ... Removing librelaxng-datatype-java (1.0+ds1-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u2) ... Removing libsensors5:amd64 (1:3.5.0-3) ... Removing libsensors-config (1:3.5.0-3) ... Removing libspoa1.1.5 (1.1.5-1) ... Removing libssh2-1:amd64 (1.8.0-2.1) ... Removing libssw0:amd64 (1.1-2) ... Removing libthread-pool0 (1.0.0-2) ... Removing libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb-dri2-0:amd64 (1.13.1-2) ... Removing libxcb-dri3-0:amd64 (1.13.1-2) ... Removing libxcb-glx0:amd64 (1.13.1-2) ... Removing libxcb-present0:amd64 (1.13.1-2) ... Removing libxcb-sync1:amd64 (1.13.1-2) ... Removing libxdamage1:amd64 (1:1.1.4-3+b3) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxml-commons-resolver1.1-java (1.2-9) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libyaml-0-2:amd64 (0.2.1-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Removing scala-library (2.11.12-4) ... Removing unzip (6.0-23+deb10u2) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libdrm2:amd64 (2.4.97-1) ... Removing libdrm-common (2.4.97-1) ... Removing python (2.7.16-1) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing libx11-data (2:1.6.7-1+deb10u2) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7 (2.7.16-2+deb10u1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Removing python2.7-minimal (2.7.16-2+deb10u1) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... find: '/usr/lib/python2.7': No such file or directory Removing libreadline7:amd64 (7.0-5) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Removing libistack-commons-java (3.0.6-3) ... Removing ant-optional (1.10.5-2) ... Removing ant (1.10.5-2) ... Removing ca-certificates-java (20190405) ... Removing openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing java-common (0.71) ... Removing libactivation-java (1.2.0-2) ... Removing libsisu-ioc-java (2.3.0-11) ... Removing libsisu-guice-java (4.2.0-1) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-3) ... Removing libmaven3-core-java (3.6.0-1) ... Removing libmaven-parent-java (31-2) ... Removing libargs4j-java (2.33-1) ... Removing libasound2:amd64 (1.1.8-1) ... Removing libasound2-data (1.1.8-1) ... Removing libsisu-plexus-java (0.3.3-3) ... Removing libsisu-inject-java (0.3.3-1) ... Removing libguice-java (4.2.1-1) ... Removing libcups2:amd64 (2.2.10-6+deb10u6) ... Removing libavahi-client3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common3:amd64 (0.7-4+deb10u1) ... Removing libavahi-common-data:amd64 (0.7-4+deb10u1) ... Removing libcdi-api-java (1.2-2) ... Removing libcommons-cli-java (1.4-1) ... Removing libwagon-http-java (3.3.1-2) ... Removing libhttpclient-java (4.5.7-1+deb10u1) ... Removing libcommons-codec-java (1.11-1) ... Removing libplexus-archiver-java (3.6.0-2) ... Removing libcommons-compress-java (1.18-2+deb10u1) ... Removing libplexus-io-java (3.1.1-1) ... Removing libmaven-shared-utils-java (3.3.0-1) ... Removing libcommons-io-java (2.6-2+deb10u1) ... Removing libcommons-lang3-java (3.8-2) ... Removing libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Removing libdom4j-java (2.1.1-2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u4) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libgeronimo-annotation-1.3-spec-java (1.0-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Removing libguava-java (19.0-1) ... Removing libhttpcore-java (4.4.11-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjsoup-java (1.10.2-2) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing libkrb5-3:amd64 (1.17-3+deb10u4) ... Removing libk5crypto3:amd64 (1.17-3+deb10u4) ... Removing libkrb5support0:amd64 (1.17-3+deb10u4) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing libmaven-resolver-java (1.3.1-1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u5) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libpcsclite1:amd64 (1.8.24-1) ... Removing libplexus-sec-dispatcher-java (1.4-4) ... Removing libplexus-cipher-java (1.7-3) ... Removing libplexus-classworlds-java (2.6.0-1) ... Removing libplexus-component-annotations-java (1.7.1-7) ... Removing libplexus-interpolation-java (1.25-1) ... Removing libwagon-provider-api-java (3.3.1-2) ... Removing libplexus-utils2-java (3.1.1-1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libslf4j-java (1.7.25-3) ... Removing libsnappy-java (1.1.7.2-1) ... Removing libsnappy-jni (1.1.7.2-1) ... Removing libsnappy1v5:amd64 (1.1.7-1) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Removing openssl (1.1.1n-0+deb10u3) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Removing libxz-java (1.8-2) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Removing libcodemodel-java (2.6+jaxb2.3.0.1-8) ... Removing libaopalliance-java (20070526-6) ... Removing libcommons-logging-java (1.2-2) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (18-1) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 1m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'remove', 'ant', 'ant-optional', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbsd0:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libelf1:amd64', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec2:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk2', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libprocps7:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa1.1.5', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthread-pool0', 'libtxw2-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'pilon', 'procps', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-distutils', 'python3-lib2to3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.7', 'python3.7-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'spades', 'ucf', 'unzip', 'x11-common', 'unicycler'] 1m2.7s INFO: Running scripts post_remove 1m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_remove_exceptions'] 1m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_remove_exceptions'] 1m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--purge', 'ant', 'ant-optional', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbsd0:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libelf1:amd64', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec2:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk2', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libprocps7:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa1.1.5', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthread-pool0', 'libtxw2-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'pilon', 'procps', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-distutils', 'python3-lib2to3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.7', 'python3.7-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'spades', 'ucf', 'unzip', 'x11-common'] 1m3.7s DUMP: dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove bamtools which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed (Reading database ... 6563 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190405) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... Purging configuration files for java-common (0.71) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libaopalliance-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libargs4j-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcdi-api-java which isn't installed dpkg: warning: ignoring request to remove libcodemodel-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdtd-parser-java which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libedlib0 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfastinfoset-java which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhts2 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libistack-commons-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-api-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-java which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjsoncpp1 which isn't installed dpkg: warning: ignoring request to remove libjsoup-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed Purging configuration files for libldap-common (2.4.47+dfsg-3+deb10u7) ... dpkg: warning: ignoring request to remove libllvm7 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmaven-file-management-java which isn't installed dpkg: warning: ignoring request to remove libmaven-parent-java which isn't installed dpkg: warning: ignoring request to remove libmaven-resolver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-io-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-utils-java which isn't installed dpkg: warning: ignoring request to remove libmaven3-core-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-sdk-dev which isn't installed dpkg: warning: ignoring request to remove libngs-sdk2 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libplexus-archiver-java which isn't installed dpkg: warning: ignoring request to remove libplexus-cipher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-classworlds-java which isn't installed dpkg: warning: ignoring request to remove libplexus-component-annotations-java which isn't installed dpkg: warning: ignoring request to remove libplexus-interpolation-java which isn't installed dpkg: warning: ignoring request to remove libplexus-io-java which isn't installed dpkg: warning: ignoring request to remove libplexus-sec-dispatcher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-utils2-java which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libprocps7 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librelaxng-datatype-java which isn't installed dpkg: warning: ignoring request to remove librngom-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.5.0-3) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsisu-guice-java which isn't installed dpkg: warning: ignoring request to remove libsisu-inject-java which isn't installed dpkg: warning: ignoring request to remove libsisu-ioc-java which isn't installed dpkg: warning: ignoring request to remove libsisu-plexus-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libspoa1.1.5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u3) ... dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstax-ex-java which isn't installed dpkg: warning: ignoring request to remove libstreambuffer-java which isn't installed dpkg: warning: ignoring request to remove libtbb2 which isn't installed dpkg: warning: ignoring request to remove libthread-pool0 which isn't installed dpkg: warning: ignoring request to remove libtxw2-java which isn't installed dpkg: warning: ignoring request to remove libwagon-http-java which isn't installed dpkg: warning: ignoring request to remove libwagon-provider-api-java which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-9) ... dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxsom-java which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... Purging configuration files for openssl (1.1.1n-0+deb10u3) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove pilon which isn't installed Purging configuration files for procps (2:3.3.15-2) ... Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-joblib which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-yaml which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u1) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u3) ... dpkg: warning: ignoring request to remove racon which isn't installed Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove scala-library which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove spades which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for unzip (6.0-23+deb10u2) ... Purging configuration files for x11-common (1:7.7+19) ... 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--purge', 'ant', 'ant-optional', 'bamtools', 'bowtie2', 'bwa', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'fontconfig-config', 'fonts-dejavu-core', 'java-common', 'java-wrappers', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatomic1:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbsd0:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libedlib0', 'libelf1:amd64', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjpeg62-turbo:amd64', 'libjsoncpp1:amd64', 'libjsoup-java', 'libjsr305-java', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-common', 'libllvm7:amd64', 'liblmdb0:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libmpdec2:amd64', 'libncurses6:amd64', 'libnghttp2-14:amd64', 'libngs-java', 'libngs-sdk-dev', 'libngs-sdk2', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libprocps7:amd64', 'libpsl5:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libreadline7:amd64', 'librelaxng-datatype-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsisu-guice-java', 'libsisu-inject-java', 'libsisu-ioc-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libspoa1.1.5', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssl1.1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libtbb2:amd64', 'libthread-pool0', 'libtxw2-java', 'libwagon-http-java', 'libwagon-provider-api-java', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-commons-resolver1.1-java', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'lsb-base', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'pilon', 'procps', 'python', 'python-joblib', 'python-minimal', 'python-yaml', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'python3', 'python3-distutils', 'python3-lib2to3', 'python3-minimal', 'python3-pkg-resources', 'python3-setuptools', 'python3.7', 'python3.7-minimal', 'racon', 'readline-common', 'samtools', 'scala-library', 'sensible-utils', 'spades', 'ucf', 'unzip', 'x11-common'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--purge', 'unicycler'] 1m3.7s DUMP: dpkg: warning: ignoring request to remove unicycler which isn't installed 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--purge', 'unicycler'] 1m3.7s INFO: Running scripts post_purge 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_purge_exceptions'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_purge_exceptions'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--purge', '--pending'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--purge', '--pending'] 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--remove', '--pending'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg', '--remove', '--pending'] 1m3.7s INFO: Running scripts post_test 1m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_test_exceptions'] 1m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'tmp/scripts/post_test_exceptions'] 1m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 1m4.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 1m5.0s DEBUG: No broken symlinks as far as we can find. 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-divert', '--list'] 1m5.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'dpkg-divert', '--list'] 1m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'clean'] 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za', 'apt-get', 'clean'] 1m5.1s DEBUG: Recording chroot state 1m5.8s INFO: PASS: Installation and purging test. 1m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/shm'] 1m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/shm'] 1m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/console'] 1m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/console'] 1m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/ptmx'] 1m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/ptmx'] 1m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/pts'] 1m6.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/dev/pts'] 1m6.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/proc'] 1m6.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za/proc'] 1m6.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 1m6.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_gs3i3za'] 1m6.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_gs3i3za 1m6.5s INFO: PASS: All tests. 1m6.5s INFO: piuparts run ends. ret=0 End: 2024-02-01 17:16:34 GMT