Start: 2023-07-31 08:02:05 GMT [buster] Package: libkdf5-2 Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 58 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libhdf5-103, libmbedtls-dev Description: hdf5 access to data in the INSDC Sequence Read Archives Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: e7df8a86b225065173215d2316c0d7b1 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libkdf5-2_2.9.3+dfsg-2_amd64.deb Size: 16996 MD5sum: 51f2a31155d6f288a4f653b012cb8fca SHA256: 63de67aec2d949ef8f601750bfb7891f426a48c8daaebe07754bdcbfab208f33 [buster-next] Package: libkdf5-2 Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 58 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libhdf5-103, libmbedtls-dev Description: hdf5 access to data in the INSDC Sequence Read Archives Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: e7df8a86b225065173215d2316c0d7b1 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libkdf5-2_2.9.3+dfsg-2_amd64.deb Size: 16996 MD5sum: 51f2a31155d6f288a4f653b012cb8fca SHA256: 63de67aec2d949ef8f601750bfb7891f426a48c8daaebe07754bdcbfab208f33 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt libkdf5-2=2.9.3+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt libkdf5-2=2.9.3+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-2 (2023-07-14) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmptbcmlvkj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmptbcmlvkj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmptbcmlvkj/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'update'] 0m3.3s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-yf', 'dist-upgrade'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s INFO: Running scripts post_setup 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_minimize'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_setup_zz_backports'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat 0m5.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m5.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m5.6s INFO: Running scripts is_testable 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/is_testable_uninstallable'] 0m5.6s INFO: Running scripts pre_test 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_test_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_test_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_test_root_password'] 0m5.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_test_root_password'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'show', '--no-all-versions', 'libkdf5-2'] 0m5.9s DUMP: Package: libkdf5-2 Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 58 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libhdf5-103, libmbedtls-dev Description-en: hdf5 access to data in the INSDC Sequence Read Archives NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . This library is part of the ncbi-vdb package and provides an interface to the Hierarchical Data Format 5 (HDF5). Description-md5: e7df8a86b225065173215d2316c0d7b1 Homepage: https://github.com/ncbi/ncbi-vdb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libkdf5-2_2.9.3+dfsg-2_amd64.deb Size: 16996 MD5sum: 51f2a31155d6f288a4f653b012cb8fca SHA256: 63de67aec2d949ef8f601750bfb7891f426a48c8daaebe07754bdcbfab208f33 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'show', '--no-all-versions', 'libkdf5-2'] 0m5.9s INFO: apt-cache knows about the following packages: libkdf5-2 0m5.9s INFO: Running scripts pre_install 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_database-server'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy'] 0m6.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy', 'libkdf5-2'] 0m6.0s DUMP: libkdf5-2: Installed: (none) Candidate: 2.9.3+dfsg-2 Version table: 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy', 'libkdf5-2'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-y', 'install', 'libkdf5-2'] 0m7.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec0 libgfortran5 libhdf5-103 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libquadmath0 libsz2 Suggested packages: libmbedtls-doc The following NEW packages will be installed: libaec0 libgfortran5 libhdf5-103 libkdf5-2 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libquadmath0 libsz2 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 3001 kB of archives. After this operation, 11.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:5 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libmbedtls-dev amd64 2.16.0-1 [488 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libkdf5-2 amd64 2.9.3+dfsg-2 [17.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3001 kB in 0s (7186 kB/s) Selecting previously unselected package libaec0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6462 files and directories currently installed.) Preparing to unpack .../0-libaec0_1.0.2-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.2-1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../1-libquadmath0_8.3.0-6_amd64.deb ... Unpacking libquadmath0:amd64 (8.3.0-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../2-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../3-libsz2_1.0.2-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.2-1) ... Selecting previously unselected package libhdf5-103:amd64. Preparing to unpack .../4-libhdf5-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package libmbedcrypto3:amd64. Preparing to unpack .../5-libmbedcrypto3_2.16.0-1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.0-1) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../6-libmbedx509-0_2.16.0-1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.0-1) ... Selecting previously unselected package libmbedtls12:amd64. Preparing to unpack .../7-libmbedtls12_2.16.0-1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.0-1) ... Selecting previously unselected package libmbedtls-dev:amd64. Preparing to unpack .../8-libmbedtls-dev_2.16.0-1_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.16.0-1) ... Selecting previously unselected package libkdf5-2. Preparing to unpack .../9-libkdf5-2_2.9.3+dfsg-2_amd64.deb ... Unpacking libkdf5-2 (2.9.3+dfsg-2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libmbedtls-dev:amd64 (2.16.0-1) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libkdf5-2 (2.9.3+dfsg-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-y', 'install', 'libkdf5-2'] 0m7.9s INFO: Running scripts post_install 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_install_exceptions'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_install_exceptions'] 0m7.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m8.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmptbcmlvkj to buster-next 0m8.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main deb http://security.debian.org buster/updates main deb http://deb.debian.org/debian/ buster-updates main deb http://deb.debian.org/debian/ buster-proposed-updates main 0m8.2s INFO: Running scripts pre_distupgrade 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'update'] 0m10.2s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Get:2 http://deb.debian.org/debian buster-updates InRelease [56.6 kB] Get:3 http://security.debian.org buster/updates InRelease [34.8 kB] Get:4 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB] Get:5 http://security.debian.org buster/updates/main amd64 Packages [545 kB] Get:6 http://security.debian.org buster/updates/main Translation-en [294 kB] Get:7 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B] Get:8 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B] Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B] Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B] Fetched 1008 kB in 1s (1079 kB/s) Reading package lists... 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'update'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-yf', 'dist-upgrade'] 0m14.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debian-archive-keyring libbz2-1.0 libc-bin libc6 libgnutls30 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libncursesw6 libsystemd0 libtasn1-6 libtinfo6 libudev1 ncurses-base ncurses-bin tzdata zlib1g 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7942 kB of archives. After this operation, 317 kB of additional disk space will be used. Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB] Get:2 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB] Get:3 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB] Get:4 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB] Get:5 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB] Get:6 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB] Get:7 http://security.debian.org buster/updates/main amd64 debian-archive-keyring all 2019.1+deb10u2 [110 kB] Get:8 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB] Get:9 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB] Get:10 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB] Get:11 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB] Get:12 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB] Get:13 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB] Get:14 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB] Get:15 http://security.debian.org buster/updates/main amd64 libmbedtls-dev amd64 2.16.9-0~deb10u1 [514 kB] Get:16 http://security.debian.org buster/updates/main amd64 libmbedx509-0 amd64 2.16.9-0~deb10u1 [109 kB] Get:17 http://security.debian.org buster/updates/main amd64 libmbedtls12 amd64 2.16.9-0~deb10u1 [140 kB] Get:18 http://security.debian.org buster/updates/main amd64 libmbedcrypto3 amd64 2.16.9-0~deb10u1 [220 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7942 kB in 1s (10.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../libc6_2.28-10+deb10u2_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc6:amd64 (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u2_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc-bin (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u3_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u10_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libsystemd0:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6612 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u2_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u2) over (2019.1+deb10u1) ... Setting up debian-archive-keyring (2019.1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u10_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libudev1:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3+deb10u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3+deb10u1) over (4.13-3) ... Setting up libtasn1-6:amd64 (4.13-3+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u10_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u10) over (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6618 files and directories currently installed.) Preparing to unpack .../tzdata_2021a-0+deb10u11_all.deb ... Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ... Preparing to unpack .../libmbedtls-dev_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Preparing to unpack .../libmbedx509-0_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Preparing to unpack .../libmbedtls12_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Preparing to unpack .../libmbedcrypto3_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Setting up tzdata (2021a-0+deb10u11) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jul 31 08:02:20 UTC 2023. Universal Time is now: Mon Jul 31 08:02:20 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libmbedcrypto3:amd64 (2.16.9-0~deb10u1) ... Setting up libmbedx509-0:amd64 (2.16.9-0~deb10u1) ... Setting up libmbedtls12:amd64 (2.16.9-0~deb10u1) ... Setting up libmbedtls-dev:amd64 (2.16.9-0~deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-yf', 'dist-upgrade'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.1s DUMP: 8556e1878a86704e4f5058a3cd37fa62 - 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'show', '--no-all-versions', 'libkdf5-2'] 0m15.3s DUMP: Package: libkdf5-2 Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 58 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.4), libhdf5-103, libmbedtls-dev Description-en: hdf5 access to data in the INSDC Sequence Read Archives NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb. . This library is part of the ncbi-vdb package and provides an interface to the Hierarchical Data Format 5 (HDF5). Description-md5: e7df8a86b225065173215d2316c0d7b1 Homepage: https://github.com/ncbi/ncbi-vdb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/libkdf5-2_2.9.3+dfsg-2_amd64.deb Size: 16996 MD5sum: 51f2a31155d6f288a4f653b012cb8fca SHA256: 63de67aec2d949ef8f601750bfb7891f426a48c8daaebe07754bdcbfab208f33 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'show', '--no-all-versions', 'libkdf5-2'] 0m15.3s INFO: apt-cache knows about the following packages: libkdf5-2 0m15.3s INFO: Running scripts pre_install 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_database-server'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_database-server'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_extras'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_extras'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy'] 0m15.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy', 'libkdf5-2'] 0m15.5s DUMP: libkdf5-2: Installed: 2.9.3+dfsg-2 Candidate: 2.9.3+dfsg-2 Version table: *** 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy', 'libkdf5-2'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-y', 'install', 'libkdf5-2'] 0m15.9s DUMP: Reading package lists... Building dependency tree... Reading state information... libkdf5-2 is already the newest version (2.9.3+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-y', 'install', 'libkdf5-2'] 0m15.9s INFO: Running scripts post_install 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_install_exceptions'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_install_exceptions'] 0m15.9s INFO: Running scripts post_distupgrade 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m16.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m16.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m16.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m16.6s INFO: Running scripts pre_install 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_database-server'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_database-server'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_exceptions'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_exceptions'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy'] 0m16.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy', 'libkdf5-2'] 0m16.7s DUMP: libkdf5-2: Installed: 2.9.3+dfsg-2 Candidate: 2.9.3+dfsg-2 Version table: *** 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-cache', 'policy', 'libkdf5-2'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-y', 'install', 'libkdf5-2=2.9.3+dfsg-2'] 0m17.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libkdf5-2 is already the newest version (2.9.3+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', '-y', 'install', 'libkdf5-2=2.9.3+dfsg-2'] 0m17.2s INFO: Running scripts post_install 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_install_exceptions'] 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_install_exceptions'] 0m17.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m17.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m17.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', '-ac', '--ignore-obsolete'] 0m18.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', '-ac', '--ignore-obsolete'] 0m18.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.6s DUMP: 0.15.6 0m18.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.6s INFO: Running adequate version 0.15.6 now. 0m18.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'libkdf5-2'] 0m18.7s DUMP: libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileInit libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistMake libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryPathType_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryVOpenDirRead libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => SetRCFileFuncLine libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => string_vprintf libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryRelease_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistToConstNamelist libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileAddRef libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KFileInit_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryResolvePath_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistRelease libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryInit_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => string_copy libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryOpenDirRead_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileDimensionality libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileRead libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KNamelistCount libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileRelease libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KNamelistGet libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryVisit_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryAddRef_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileDimExtents libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileElementSize libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistToNamelist libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryList_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KNamelistRelease libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => string_size libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistAppend 0m18.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'libkdf5-2'] 0m18.7s ERROR: WARN: Inadequate results from running adequate! libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileInit libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistMake libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryPathType_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryVOpenDirRead libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => SetRCFileFuncLine libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => string_vprintf libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryRelease_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistToConstNamelist libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileAddRef libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KFileInit_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryResolvePath_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistRelease libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryInit_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => string_copy libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryOpenDirRead_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileDimensionality libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileRead libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KNamelistCount libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileRelease libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KNamelistGet libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryVisit_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryAddRef_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileDimExtents libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KArrayFileElementSize libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistToNamelist libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KDirectoryList_v1 libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => KNamelistRelease libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => string_size libkdf5-2: undefined-symbol /usr/lib/x86_64-linux-gnu/libkdf5.so.2.9.3 => VNamelistAppend 0m18.7s ERROR: WARN: Running adequate resulted in inadequate tags found: undefined-symbol 0m18.7s INFO: Running scripts pre_remove 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_exceptions'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/pre_remove_exceptions'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u2 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2 install ok installed libc-bin libc-bin 2.28-10+deb10u2 install ok installed libc6:amd64 libc6 2.28-10+deb10u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libkdf5-2 libkdf5-2 2.9.3+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0~deb10u1 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 2.16.9-0~deb10u1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0~deb10u1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0~deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3 install ok installed libudev1:amd64 libudev1 241-7~deb10u10 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u11 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'remove', 'libaec0:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libquadmath0:amd64', 'libsz2:amd64', 'libkdf5-2'] 0m21.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec0 libgfortran5 libhdf5-103 libkdf5-2 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libquadmath0 libsz2 0 upgraded, 0 newly installed, 10 to remove and 0 not upgraded. After this operation, 11.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6621 files and directories currently installed.) Removing libkdf5-2 (2.9.3+dfsg-2) ... Removing libhdf5-103:amd64 (1.10.4+repack-10) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libmbedtls-dev:amd64 (2.16.9-0~deb10u1) ... Removing libmbedtls12:amd64 (2.16.9-0~deb10u1) ... Removing libmbedx509-0:amd64 (2.16.9-0~deb10u1) ... Removing libmbedcrypto3:amd64 (2.16.9-0~deb10u1) ... Removing libquadmath0:amd64 (8.3.0-6) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'remove', 'libaec0:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libquadmath0:amd64', 'libsz2:amd64', 'libkdf5-2'] 0m21.1s INFO: Running scripts post_remove 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_remove_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_remove_exceptions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--purge', 'libaec0:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libquadmath0:amd64', 'libsz2:amd64'] 0m21.1s DUMP: dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls-dev which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--purge', 'libaec0:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libquadmath0:amd64', 'libsz2:amd64'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--purge', 'libkdf5-2'] 0m21.1s DUMP: dpkg: warning: ignoring request to remove libkdf5-2 which isn't installed 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--purge', 'libkdf5-2'] 0m21.1s INFO: Running scripts post_purge 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_purge_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_purge_exceptions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--purge', '--pending'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--purge', '--pending'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--remove', '--pending'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg', '--remove', '--pending'] 0m21.1s INFO: Running scripts post_test 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_test_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'tmp/scripts/post_test_exceptions'] 0m21.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m21.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg-divert', '--list'] 0m21.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'dpkg-divert', '--list'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'clean'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj', 'apt-get', 'clean'] 0m21.5s DEBUG: Recording chroot state 0m22.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/shm'] 0m22.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/shm'] 0m22.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/console'] 0m22.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/console'] 0m22.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/ptmx'] 0m22.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/ptmx'] 0m22.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/pts'] 0m22.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/dev/pts'] 0m22.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/proc'] 0m22.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj/proc'] 0m22.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m22.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmptbcmlvkj'] 0m22.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmptbcmlvkj 0m22.6s INFO: PASS: Upgrading between Debian distributions. 0m22.6s INFO: PASS: All tests. 0m22.6s INFO: piuparts run ends. ret=0 End: 2023-07-31 08:02:28 GMT