Start: 2023-08-24 21:06:04 GMT [buster] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 11392 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.9.3+dfsg-2), libkdf5-dev (= 2.9.3+dfsg-2), libncbi-wvdb-dev (= 2.9.3+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: fd5ca8c780df37503bf62c080a3cb857 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb Size: 1578076 MD5sum: 37b20b93ae9d9271c58cd5abb4f38cdc SHA256: 9566c1e71424d72fa6ba8e07e1646e10b6152a5c45fd9f787cd2ee69a56a8eb7 [buster-next] Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 11392 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.9.3+dfsg-2), libkdf5-dev (= 2.9.3+dfsg-2), libncbi-wvdb-dev (= 2.9.3+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description: libraries for using data in the INSDC Sequence Read Archives (devel) Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: fd5ca8c780df37503bf62c080a3cb857 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb Size: 1578076 MD5sum: 37b20b93ae9d9271c58cd5abb4f38cdc SHA256: 9566c1e71424d72fa6ba8e07e1646e10b6152a5c45fd9f787cd2ee69a56a8eb7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt libncbi-vdb-dev=2.9.3+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt libncbi-vdb-dev=2.9.3+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-25-amd64 #1 SMP Debian 5.10.191-1 (2023-08-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp4vjypnco 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp4vjypnco 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp4vjypnco/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'update'] 0m3.1s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-yf', 'dist-upgrade'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.8s INFO: Running scripts post_setup 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat 0m5.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m5.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m5.5s INFO: Running scripts is_testable 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s INFO: Running scripts pre_test 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_test_root_password'] 0m5.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_test_root_password'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m5.8s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 11392 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.9.3+dfsg-2), libkdf5-dev (= 2.9.3+dfsg-2), libncbi-wvdb-dev (= 2.9.3+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by Reference, which only stores the differences in base pairs between sequence data and the segment it aligns to. The process to restore original data, for example as FastQ, requires fast access to the reference sequences that the original data was aligned to. NCBI recommends that SRA users dedicate local disk space to store references downloaded from the NCBI SRA site. As of Fall 2014, the complete collection of these reference sequences is 66 GB. While it isn't usually necessary to download the entirety of the reference sequences, this should give you an idea of the scale of the storage requirement. By default, the Toolkit will download missing reference sequences on demand and cache them in the user's home directory. The location of this cache is configurable, as is whether the download is automatic or manual. . This is the development package. Description-md5: fd5ca8c780df37503bf62c080a3cb857 Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb Size: 1578076 MD5sum: 37b20b93ae9d9271c58cd5abb4f38cdc SHA256: 9566c1e71424d72fa6ba8e07e1646e10b6152a5c45fd9f787cd2ee69a56a8eb7 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m5.8s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m5.8s INFO: Running scripts pre_install 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_extras'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy'] 0m5.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m6.0s DUMP: libncbi-vdb-dev: Installed: (none) Candidate: 2.9.3+dfsg-2 Version table: 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m13.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran5 libhdf5-103 libicu63 libkdf5-2 libkdf5-dev libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev zlib1g-dev Suggested packages: glibc-doc manpages-dev libmbedtls-doc Recommended packages: bzip2-doc manpages manpages-dev The following NEW packages will be installed: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran5 libhdf5-103 libicu63 libkdf5-2 libkdf5-dev libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev zlib1g-dev 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After this operation, 101 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:3 http://deb.debian.org/debian buster/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libc-dev-bin amd64 2.28-10+deb10u1 [276 kB] Get:5 http://deb.debian.org/debian buster/main amd64 linux-libc-dev amd64 4.19.249-2 [1530 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libc6-dev amd64 2.28-10+deb10u1 [2692 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get:8 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u3 [8293 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libmbedtls-dev amd64 2.16.0-1 [488 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libkdf5-2 amd64 2.9.3+dfsg-2 [17.0 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libkdf5-dev amd64 2.9.3+dfsg-2 [16.5 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u4 [689 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libncbi-vdb2 amd64 2.9.3+dfsg-2 [1132 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libncbi-wvdb2 amd64 2.9.3+dfsg-2 [1028 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libncbi-wvdb-dev amd64 2.9.3+dfsg-2 [1157 kB] Get:22 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u1 [210 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libncbi-vdb-dev amd64 2.9.3+dfsg-2 [1578 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.7 MB in 4s (5964 kB/s) Selecting previously unselected package libaec0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6462 files and directories currently installed.) Preparing to unpack .../00-libaec0_1.0.2-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.2-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../01-libsz2_1.0.2-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.2-1) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../02-libaec-dev_1.0.2-1_amd64.deb ... Unpacking libaec-dev:amd64 (1.0.2-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../03-libc-dev-bin_2.28-10+deb10u1_amd64.deb ... Unpacking libc-dev-bin (2.28-10+deb10u1) ... Selecting previously unselected package linux-libc-dev:amd64. Preparing to unpack .../04-linux-libc-dev_4.19.249-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.249-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../05-libc6-dev_2.28-10+deb10u1_amd64.deb ... Unpacking libc6-dev:amd64 (2.28-10+deb10u1) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../06-libbz2-dev_1.0.6-9.2~deb10u1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../07-libquadmath0_8.3.0-6_amd64.deb ... Unpacking libquadmath0:amd64 (8.3.0-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../08-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Selecting previously unselected package libhdf5-103:amd64. Preparing to unpack .../09-libhdf5-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../10-libicu63_63.1-6+deb10u3_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u3) ... Selecting previously unselected package libmbedcrypto3:amd64. Preparing to unpack .../11-libmbedcrypto3_2.16.0-1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.0-1) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../12-libmbedx509-0_2.16.0-1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.0-1) ... Selecting previously unselected package libmbedtls12:amd64. Preparing to unpack .../13-libmbedtls12_2.16.0-1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.0-1) ... Selecting previously unselected package libmbedtls-dev:amd64. Preparing to unpack .../14-libmbedtls-dev_2.16.0-1_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.16.0-1) ... Selecting previously unselected package libkdf5-2. Preparing to unpack .../15-libkdf5-2_2.9.3+dfsg-2_amd64.deb ... Unpacking libkdf5-2 (2.9.3+dfsg-2) ... Selecting previously unselected package libkdf5-dev. Preparing to unpack .../16-libkdf5-dev_2.9.3+dfsg-2_amd64.deb ... Unpacking libkdf5-dev (2.9.3+dfsg-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../17-libxml2_2.9.4+dfsg1-7+deb10u4_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Selecting previously unselected package libncbi-vdb2. Preparing to unpack .../18-libncbi-vdb2_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-vdb2 (2.9.3+dfsg-2) ... Selecting previously unselected package libncbi-wvdb2. Preparing to unpack .../19-libncbi-wvdb2_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb2 (2.9.3+dfsg-2) ... Selecting previously unselected package libncbi-wvdb-dev. Preparing to unpack .../20-libncbi-wvdb-dev_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-wvdb-dev (2.9.3+dfsg-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../21-zlib1g-dev_1%3a1.2.11.dfsg-1+deb10u1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Selecting previously unselected package libncbi-vdb-dev. Preparing to unpack .../22-libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb ... Unpacking libncbi-vdb-dev (2.9.3+dfsg-2) ... Setting up linux-libc-dev:amd64 (4.19.249-2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u3) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libc-dev-bin (2.28-10+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u4) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libmbedtls-dev:amd64 (2.16.0-1) ... Setting up libncbi-vdb2 (2.9.3+dfsg-2) ... Setting up libncbi-wvdb2 (2.9.3+dfsg-2) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up libc6-dev:amd64 (2.28-10+deb10u1) ... Setting up libncbi-wvdb-dev (2.9.3+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.6-9.2~deb10u1) ... Setting up libkdf5-2 (2.9.3+dfsg-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u1) ... Setting up libkdf5-dev (2.9.3+dfsg-2) ... Setting up libncbi-vdb-dev (2.9.3+dfsg-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m13.9s INFO: Running scripts post_install 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_install_exceptions'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_install_exceptions'] 0m13.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m14.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m14.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp4vjypnco to buster-next 0m14.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main deb http://security.debian.org buster/updates main deb http://deb.debian.org/debian/ buster-updates main deb http://deb.debian.org/debian/ buster-proposed-updates main 0m14.3s INFO: Running scripts pre_distupgrade 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_exceptions'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'update'] 0m16.5s DUMP: Get:1 http://security.debian.org buster/updates InRelease [34.8 kB] Hit:2 http://deb.debian.org/debian buster InRelease Get:3 http://deb.debian.org/debian buster-updates InRelease [56.6 kB] Get:4 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB] Get:5 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B] Get:6 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B] Get:7 http://security.debian.org buster/updates/main amd64 Packages [553 kB] Get:8 http://security.debian.org buster/updates/main Translation-en [293 kB] Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B] Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B] Fetched 1014 kB in 1s (954 kB/s) Reading package lists... 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'update'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-yf', 'dist-upgrade'] 0m21.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debian-archive-keyring libbz2-1.0 libbz2-dev libc-bin libc-dev-bin libc6 libc6-dev libgnutls30 libhdf5-103 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libncursesw6 libsystemd0 libtasn1-6 libtinfo6 libudev1 libxml2 linux-libc-dev ncurses-base ncurses-bin tzdata zlib1g zlib1g-dev 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.7 MB of archives. After this operation, 366 kB of additional disk space will be used. Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB] Get:2 http://security.debian.org buster/updates/main amd64 libc6-dev amd64 2.28-10+deb10u2 [2693 kB] Get:3 http://security.debian.org buster/updates/main amd64 libc-dev-bin amd64 2.28-10+deb10u2 [276 kB] Get:4 http://security.debian.org buster/updates/main amd64 linux-libc-dev amd64 4.19.289-2 [1581 kB] Get:5 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB] Get:6 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB] Get:7 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB] Get:8 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB] Get:9 http://security.debian.org buster/updates/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1+deb10u2 [210 kB] Get:10 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB] Get:11 http://security.debian.org buster/updates/main amd64 debian-archive-keyring all 2019.1+deb10u2 [110 kB] Get:12 http://security.debian.org buster/updates/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u2 [30.2 kB] Get:13 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB] Get:14 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB] Get:15 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB] Get:16 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB] Get:17 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB] Get:18 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB] Get:19 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB] Get:20 http://security.debian.org buster/updates/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u6 [690 kB] Get:21 http://security.debian.org buster/updates/main amd64 libhdf5-103 amd64 1.10.4+repack-10+deb10u1 [1327 kB] Get:22 http://security.debian.org buster/updates/main amd64 libmbedtls-dev amd64 2.16.9-0~deb10u1 [514 kB] Get:23 http://security.debian.org buster/updates/main amd64 libmbedx509-0 amd64 2.16.9-0~deb10u1 [109 kB] Get:24 http://security.debian.org buster/updates/main amd64 libmbedtls12 amd64 2.16.9-0~deb10u1 [140 kB] Get:25 http://security.debian.org buster/updates/main amd64 libmbedcrypto3 amd64 2.16.9-0~deb10u1 [220 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.7 MB in 0s (58.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8642 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8642 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.28-10+deb10u2_amd64.deb ... Unpacking libc6-dev:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Preparing to unpack .../libc-dev-bin_2.28-10+deb10u2_amd64.deb ... Unpacking libc-dev-bin (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Preparing to unpack .../linux-libc-dev_4.19.289-2_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.19.289-2) over (4.19.249-2) ... Preparing to unpack .../libc6_2.28-10+deb10u2_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc6:amd64 (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8640 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u2_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc-bin (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8640 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u3_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8640 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u10_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libsystemd0:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8640 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.2.11.dfsg-1+deb10u2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ... Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8640 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u2_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u2) over (2019.1+deb10u1) ... Setting up debian-archive-keyring (2019.1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../libbz2-dev_1.0.6-9.2~deb10u2_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ... Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u10_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libudev1:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3+deb10u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3+deb10u1) over (4.13-3) ... Setting up libtasn1-6:amd64 (4.13-3+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u10_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u10) over (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8646 files and directories currently installed.) Preparing to unpack .../0-tzdata_2021a-0+deb10u11_all.deb ... Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ... Preparing to unpack .../1-libxml2_2.9.4+dfsg1-7+deb10u6_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u6) over (2.9.4+dfsg1-7+deb10u4) ... Preparing to unpack .../2-libhdf5-103_1.10.4+repack-10+deb10u1_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10+deb10u1) over (1.10.4+repack-10) ... Preparing to unpack .../3-libmbedtls-dev_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedtls-dev:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Preparing to unpack .../4-libmbedx509-0_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Preparing to unpack .../5-libmbedtls12_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Preparing to unpack .../6-libmbedcrypto3_2.16.9-0~deb10u1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.9-0~deb10u1) over (2.16.0-1) ... Setting up linux-libc-dev:amd64 (4.19.289-2) ... Setting up tzdata (2021a-0+deb10u11) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Aug 24 21:06:25 UTC 2023. Universal Time is now: Thu Aug 24 21:06:25 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libhdf5-103:amd64 (1.10.4+repack-10+deb10u1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0~deb10u1) ... Setting up libc-dev-bin (2.28-10+deb10u2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u6) ... Setting up libmbedx509-0:amd64 (2.16.9-0~deb10u1) ... Setting up libmbedtls12:amd64 (2.16.9-0~deb10u1) ... Setting up libmbedtls-dev:amd64 (2.16.9-0~deb10u1) ... Setting up libc6-dev:amd64 (2.28-10+deb10u2) ... Setting up libbz2-dev:amd64 (1.0.6-9.2~deb10u2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u2) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-yf', 'dist-upgrade'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.9s DUMP: 7a98bef5150177b87c5e29b4c38902e6 - 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m22.1s DUMP: Package: libncbi-vdb-dev Source: ncbi-vdb Version: 2.9.3+dfsg-2 Installed-Size: 11392 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libncbi-vdb2 (= 2.9.3+dfsg-2), libkdf5-dev (= 2.9.3+dfsg-2), libncbi-wvdb-dev (= 2.9.3+dfsg-2), libaec-dev, libbz2-dev, zlib1g-dev Description-en: libraries for using data in the INSDC Sequence Read Archives (devel) Much of the data submitted these days, for example in BAM, Illumina export.txt, and Complete Genomics formats, contain alignment information. With aligned data, NCBI uses Compression by Reference, which only stores the differences in base pairs between sequence data and the segment it aligns to. The process to restore original data, for example as FastQ, requires fast access to the reference sequences that the original data was aligned to. NCBI recommends that SRA users dedicate local disk space to store references downloaded from the NCBI SRA site. As of Fall 2014, the complete collection of these reference sequences is 66 GB. While it isn't usually necessary to download the entirety of the reference sequences, this should give you an idea of the scale of the storage requirement. By default, the Toolkit will download missing reference sequences on demand and cache them in the user's home directory. The location of this cache is configurable, as is whether the download is automatic or manual. . This is the development package. Description-md5: fd5ca8c780df37503bf62c080a3cb857 Homepage: https://github.com/ncbi/ncbi-vdb Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/n/ncbi-vdb/libncbi-vdb-dev_2.9.3+dfsg-2_amd64.deb Size: 1578076 MD5sum: 37b20b93ae9d9271c58cd5abb4f38cdc SHA256: 9566c1e71424d72fa6ba8e07e1646e10b6152a5c45fd9f787cd2ee69a56a8eb7 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'show', '--no-all-versions', 'libncbi-vdb-dev'] 0m22.1s INFO: apt-cache knows about the following packages: libncbi-vdb-dev 0m22.1s INFO: Running scripts pre_install 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_database-server'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_database-server'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_exceptions'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_extras'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_extras'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy'] 0m22.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy'] 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m22.3s DUMP: libncbi-vdb-dev: Installed: 2.9.3+dfsg-2 Candidate: 2.9.3+dfsg-2 Version table: *** 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m22.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (2.9.3+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-y', 'install', 'libncbi-vdb-dev'] 0m22.7s INFO: Running scripts post_install 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_install_exceptions'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_install_exceptions'] 0m22.7s INFO: Running scripts post_distupgrade 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m23.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m23.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m23.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m23.4s INFO: Running scripts pre_install 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_database-server'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_database-server'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy'] 0m23.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy'] 0m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m23.6s DUMP: libncbi-vdb-dev: Installed: 2.9.3+dfsg-2 Candidate: 2.9.3+dfsg-2 Version table: *** 2.9.3+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-cache', 'policy', 'libncbi-vdb-dev'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=2.9.3+dfsg-2'] 0m24.1s DUMP: Reading package lists... Building dependency tree... Reading state information... libncbi-vdb-dev is already the newest version (2.9.3+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', '-y', 'install', 'libncbi-vdb-dev=2.9.3+dfsg-2'] 0m24.1s INFO: Running scripts post_install 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_install_exceptions'] 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_install_exceptions'] 0m24.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m24.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m24.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', '-ac', '--ignore-obsolete'] 0m26.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', '-ac', '--ignore-obsolete'] 0m26.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.0s DUMP: 0.15.6 0m26.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.0s INFO: Running adequate version 0.15.6 now. 0m26.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'libncbi-vdb-dev'] 0m26.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'libncbi-vdb-dev'] 0m26.2s INFO: Running scripts pre_remove 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/pre_remove_exceptions'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.1s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u2 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libaec-dev:amd64 libaec-dev 1.0.2-1 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2 install ok installed libbz2-dev:amd64 libbz2-dev 1.0.6-9.2~deb10u2 install ok installed libc-bin libc-bin 2.28-10+deb10u2 install ok installed libc-dev-bin libc-dev-bin 2.28-10+deb10u2 install ok installed libc6:amd64 libc6 2.28-10+deb10u2 install ok installed libc6-dev:amd64 libc6-dev 2.28-10+deb10u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhdf5-103:amd64 libhdf5-103 1.10.4+repack-10+deb10u1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libicu63:amd64 libicu63 63.1-6+deb10u3 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libkdf5-2 libkdf5-2 2.9.3+dfsg-2 install ok installed libkdf5-dev libkdf5-dev 2.9.3+dfsg-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0~deb10u1 install ok installed libmbedtls-dev:amd64 libmbedtls-dev 2.16.9-0~deb10u1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0~deb10u1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0~deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncbi-vdb-dev libncbi-vdb-dev 2.9.3+dfsg-2 install ok installed libncbi-vdb2 libncbi-vdb2 2.9.3+dfsg-2 install ok installed libncbi-wvdb-dev libncbi-wvdb-dev 2.9.3+dfsg-2 install ok installed libncbi-wvdb2 libncbi-wvdb2 2.9.3+dfsg-2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3 install ok installed libudev1:amd64 libudev1 241-7~deb10u10 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libxml2:amd64 libxml2 2.9.4+dfsg1-7+deb10u6 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed linux-libc-dev:amd64 linux-libc-dev 4.19.289-2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u11 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.11.dfsg-1+deb10u2 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'remove', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64', 'libncbi-vdb-dev'] 0m29.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libaec-dev libaec0 libbz2-dev libc-dev-bin libc6-dev libgfortran5 libhdf5-103 libicu63 libkdf5-2 libkdf5-dev libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 libncbi-vdb-dev libncbi-vdb2 libncbi-wvdb-dev libncbi-wvdb2 libquadmath0 libsz2 libxml2 linux-libc-dev zlib1g-dev 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 101 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8649 files and directories currently installed.) Removing libncbi-vdb-dev (2.9.3+dfsg-2) ... Removing libaec-dev:amd64 (1.0.2-1) ... Removing libkdf5-dev (2.9.3+dfsg-2) ... Removing libkdf5-2 (2.9.3+dfsg-2) ... Removing libhdf5-103:amd64 (1.10.4+repack-10+deb10u1) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libbz2-dev:amd64 (1.0.6-9.2~deb10u2) ... Removing zlib1g-dev:amd64 (1:1.2.11.dfsg-1+deb10u2) ... Removing libc6-dev:amd64 (2.28-10+deb10u2) ... Removing libc-dev-bin (2.28-10+deb10u2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libncbi-wvdb-dev (2.9.3+dfsg-2) ... Removing libncbi-wvdb2 (2.9.3+dfsg-2) ... Removing libncbi-vdb2 (2.9.3+dfsg-2) ... Removing libxml2:amd64 (2.9.4+dfsg1-7+deb10u6) ... Removing libicu63:amd64 (63.1-6+deb10u3) ... Removing libmbedtls-dev:amd64 (2.16.9-0~deb10u1) ... Removing libmbedtls12:amd64 (2.16.9-0~deb10u1) ... Removing libmbedx509-0:amd64 (2.16.9-0~deb10u1) ... Removing libmbedcrypto3:amd64 (2.16.9-0~deb10u1) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing linux-libc-dev:amd64 (4.19.289-2) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'remove', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64', 'libncbi-vdb-dev'] 0m29.0s INFO: Running scripts post_remove 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_remove_exceptions'] 0m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_remove_exceptions'] 0m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64'] 0m29.1s DUMP: dpkg: warning: ignoring request to remove libaec-dev which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libbz2-dev which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103 which isn't installed dpkg: warning: ignoring request to remove libicu63 which isn't installed dpkg: warning: ignoring request to remove libkdf5-2 which isn't installed dpkg: warning: ignoring request to remove libkdf5-dev which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls-dev which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb2 which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb-dev which isn't installed dpkg: warning: ignoring request to remove libncbi-wvdb2 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--purge', 'libaec-dev:amd64', 'libaec0:amd64', 'libbz2-dev:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libgfortran5:amd64', 'libhdf5-103:amd64', 'libicu63:amd64', 'libkdf5-2', 'libkdf5-dev', 'libmbedcrypto3:amd64', 'libmbedtls-dev:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libncbi-vdb2', 'libncbi-wvdb-dev', 'libncbi-wvdb2', 'libquadmath0:amd64', 'libsz2:amd64', 'libxml2:amd64', 'linux-libc-dev:amd64', 'zlib1g-dev:amd64'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--purge', 'libncbi-vdb-dev'] 0m29.1s DUMP: dpkg: warning: ignoring request to remove libncbi-vdb-dev which isn't installed 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--purge', 'libncbi-vdb-dev'] 0m29.1s INFO: Running scripts post_purge 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_purge_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_purge_exceptions'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--purge', '--pending'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--purge', '--pending'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--remove', '--pending'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg', '--remove', '--pending'] 0m29.1s INFO: Running scripts post_test 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_test_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'tmp/scripts/post_test_exceptions'] 0m29.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m29.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg-divert', '--list'] 0m29.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'dpkg-divert', '--list'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'clean'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4vjypnco', 'apt-get', 'clean'] 0m29.6s DEBUG: Recording chroot state 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/shm'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/shm'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/console'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/console'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/ptmx'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/ptmx'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/pts'] 0m30.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/dev/pts'] 0m30.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/proc'] 0m30.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp4vjypnco/proc'] 0m30.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m30.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp4vjypnco'] 0m30.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp4vjypnco 0m30.9s INFO: PASS: Upgrading between Debian distributions. 0m30.9s INFO: PASS: All tests. 0m30.9s INFO: piuparts run ends. ret=0 End: 2023-08-24 21:06:35 GMT