Start: 2023-07-15 05:04:43 GMT [buster] Package: predictprotein Version: 1.1.08-1 Installed-Size: 171 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, blast2, bioperl, ncoils, disulfinder, hmmer, hmmer2, librg-exception-perl, librg-utils-perl, ncbi-seg, make, metastudent, norsnet, norsp, predictnls, profbval, profisis, profphd, proftmb, reprof Suggests: pp-popularity-contest, pp-cache-mgr (>= 1.0.3), predictprotein-nonfree Description: suite of protein sequence analysis tools Homepage: http://www.predictprotein.org Description-md5: 15a383a129e1bde1cac5bdfc464d4e20 Section: science Priority: optional Filename: pool/main/p/predictprotein/predictprotein_1.1.08-1_all.deb Size: 58928 MD5sum: 415a9b54617efa411a98f34cd1a3d001 SHA256: 9f2105368c35036f1f828ea14655a5a0e3bf8cd2504d26a32bb003b29e4b32aa [buster-next] Package: predictprotein Version: 1.1.08-1 Installed-Size: 171 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, blast2, bioperl, ncoils, disulfinder, hmmer, hmmer2, librg-exception-perl, librg-utils-perl, ncbi-seg, make, metastudent, norsnet, norsp, predictnls, profbval, profisis, profphd, proftmb, reprof Suggests: pp-popularity-contest, pp-cache-mgr (>= 1.0.3), predictprotein-nonfree Description: suite of protein sequence analysis tools Homepage: http://www.predictprotein.org Description-md5: 15a383a129e1bde1cac5bdfc464d4e20 Section: science Priority: optional Filename: pool/main/p/predictprotein/predictprotein_1.1.08-1_all.deb Size: 58928 MD5sum: 415a9b54617efa411a98f34cd1a3d001 SHA256: 9f2105368c35036f1f828ea14655a5a0e3bf8cd2504d26a32bb003b29e4b32aa Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt predictprotein=1.1.08-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt predictprotein=1.1.08-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpplv9_7ds 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpplv9_7ds 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Created resolv.conf. 0m1.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpplv9_7ds/tmp/scripts/ 0m1.9s INFO: Running scripts post_chroot_unpack 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'update'] 0m3.0s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.6s INFO: Running scripts post_setup 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 0m5.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 0m5.3s INFO: Running scripts is_testable 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/is_testable_uninstallable'] 0m5.3s INFO: Running scripts pre_test 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_test_exceptions'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_test_root_password'] 0m5.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_test_root_password'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'show', '--no-all-versions', 'predictprotein'] 0m5.6s DUMP: Package: predictprotein Version: 1.1.08-1 Installed-Size: 171 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, blast2, bioperl, ncoils, disulfinder, hmmer, hmmer2, librg-exception-perl, librg-utils-perl, ncbi-seg, make, metastudent, norsnet, norsp, predictnls, profbval, profisis, profphd, proftmb, reprof Suggests: pp-popularity-contest, pp-cache-mgr (>= 1.0.3), predictprotein-nonfree Description-en: suite of protein sequence analysis tools PredictProtein is a sequence analysis suite providing prediction of protein structure and function. . PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations: * secondary structure * solvent accessibility * multiple sequence alignments * PROSITE sequence motifs * low-complexity regions * nuclear localisation signals * regions lacking regular structure (NORS) * unstructured loops * transmembrane helices * transmembrane beta barrels * coiled-coil regions * disulfide-bonds * disordered regions * B-value flexibility * protein-protein interaction sites * Gene Ontology terms Description-md5: 15a383a129e1bde1cac5bdfc464d4e20 Homepage: http://www.predictprotein.org Section: science Priority: optional Filename: pool/main/p/predictprotein/predictprotein_1.1.08-1_all.deb Size: 58928 MD5sum: 415a9b54617efa411a98f34cd1a3d001 SHA256: 9f2105368c35036f1f828ea14655a5a0e3bf8cd2504d26a32bb003b29e4b32aa 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'show', '--no-all-versions', 'predictprotein'] 0m5.6s INFO: apt-cache knows about the following packages: predictprotein 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy'] 0m5.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy', 'predictprotein'] 0m5.8s DUMP: predictprotein: Installed: (none) Candidate: 1.1.08-1 Version table: 1.1.08-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy', 'predictprotein'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-y', 'install', 'predictprotein'] 1m31.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bioperl blast2 ca-certificates ca-certificates-java default-jre default-jre-headless disulfinder disulfinder-data fontconfig fontconfig-config fonts-dejavu-core graphviz hmmer hmmer2 java-common libai-fann-perl libalgorithm-diff-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbio-perl-perl libbsd0 libcairo2 libcapture-tiny-perl libcdt5 libcgraph6 libclass-data-inheritable-perl libconfig-inifiles-perl libcups2 libdata-stag-perl libdatrie1 libdbus-1-3 libdevel-stacktrace-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfann2 libfile-chdir-perl libfile-listing-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgo-perl libgomp1 libgraphite2-3 libgraphviz-perl libgsl23 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 liblist-moreutils-perl libllvm7 liblmdb0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.28 libpixman-1-0 libpng16-16 libpvm3 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl libsensors-config libsensors5 libsm6 libsqlite3-0 libsquid1 libssl1.1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 libtiff5 libtimedate-perl libtry-tiny-perl liburi-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxml-parser-perl libxml-twig-perl libxml-xpath-perl libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-perl lsb-base make metastudent metastudent-data mime-support ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-seg ncoils netbase norsnet norsp openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.28 perl-openssl-defaults predictnls profbval profisis profnet-bval profnet-isis profnet-norsnet profnet-prof profphd profphd-net profphd-utils proftmb python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common reprof sensible-utils ucf x11-common Suggested packages: groff-base gsfonts graphviz-doc hmmer-doc hmmer2-doc hmmer2-pvm libasound2-plugins alsa-utils libxml-sax-expatxs-perl cups-common libfann-dev libfann-doc libgd-tools gdbm-l10n gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libdata-dump-perl liblcms2-utils libcrypt-ssleay-perl pciutils pcscd lm-sensors biosquid libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl make-doc gnuplot pp-popularity-contest libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl liblocale-codes-perl pp-cache-mgr predictprotein-nonfree python-doc python-tk python2-doc python2.7-doc binutils binfmt-support readline-doc Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libace-perl libset-scalar-perl fonts-liberation biosquid libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl dbus libglib2.0-data shared-mime-info xdg-user-dirs libxml-checker-perl xsltproc libgts-bin libhtml-format-perl krb5-locales pvm libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libtext-iconv-perl libtie-ixhash-perl libyaml-libyaml-perl | libyaml-syck-perl bzip2 file xz-utils libatk-wrapper-java-jni fonts-dejavu-extra pp-popularity-contest The following NEW packages will be installed: bioperl blast2 ca-certificates ca-certificates-java default-jre default-jre-headless disulfinder disulfinder-data fontconfig fontconfig-config fonts-dejavu-core graphviz hmmer hmmer2 java-common libai-fann-perl libalgorithm-diff-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbio-perl-perl libbsd0 libcairo2 libcapture-tiny-perl libcdt5 libcgraph6 libclass-data-inheritable-perl libconfig-inifiles-perl libcups2 libdata-stag-perl libdatrie1 libdbus-1-3 libdevel-stacktrace-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfann2 libfile-chdir-perl libfile-listing-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgo-perl libgomp1 libgraphite2-3 libgraphviz-perl libgsl23 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 liblist-moreutils-perl libllvm7 liblmdb0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.28 libpixman-1-0 libpng16-16 libpvm3 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl libsensors-config libsensors5 libsm6 libsqlite3-0 libsquid1 libssl1.1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 libtiff5 libtimedate-perl libtry-tiny-perl liburi-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxml-parser-perl libxml-twig-perl libxml-xpath-perl libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-perl lsb-base make metastudent metastudent-data mime-support ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-seg ncoils netbase norsnet norsp openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.28 perl-openssl-defaults predictnls predictprotein profbval profisis profnet-bval profnet-isis profnet-norsnet profnet-prof profphd profphd-net profphd-utils proftmb python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common reprof sensible-utils ucf x11-common 0 upgraded, 225 newly installed, 0 to remove and 0 not upgraded. Need to get 366 MB of archives. After this operation, 1599 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 perl-modules-5.28 all 5.28.1-6+deb10u1 [2873 kB] Get:2 http://deb.debian.org/debian buster/main amd64 libgdbm6 amd64 1.18.1-4 [64.7 kB] Get:3 http://deb.debian.org/debian buster/main amd64 libgdbm-compat4 amd64 1.18.1-4 [44.1 kB] Get:4 http://deb.debian.org/debian buster/main amd64 libperl5.28 amd64 5.28.1-6+deb10u1 [3894 kB] Get:5 http://deb.debian.org/debian buster/main amd64 perl amd64 5.28.1-6+deb10u1 [204 kB] Get:6 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:7 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:8 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:9 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:11 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:12 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:13 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:15 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:22 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get:23 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:24 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:26 http://deb.debian.org/debian buster/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:27 http://deb.debian.org/debian buster/main amd64 libbio-perl-perl all 1.7.2-3 [4553 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:29 http://deb.debian.org/debian buster/main amd64 libdevel-stacktrace-perl all 2.0300-1 [28.0 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libtest-deep-perl all 1.128-1 [48.8 kB] Get:32 http://deb.debian.org/debian buster/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:33 http://deb.debian.org/debian buster/main amd64 libalgorithm-diff-perl all 1.19.03-2 [47.9 kB] Get:34 http://deb.debian.org/debian buster/main amd64 libtext-diff-perl all 1.45-1 [27.7 kB] Get:35 http://deb.debian.org/debian buster/main amd64 libtest-differences-perl all 0.65-1 [18.1 kB] Get:36 http://deb.debian.org/debian buster/main amd64 libsub-uplevel-perl all 0.2800-1 [16.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 libtest-exception-perl all 0.43-1 [18.7 kB] Get:38 http://deb.debian.org/debian buster/main amd64 libtest-warn-perl all 0.36-1 [16.2 kB] Get:39 http://deb.debian.org/debian buster/main amd64 libtest-most-perl all 0.35-1 [24.5 kB] Get:40 http://deb.debian.org/debian buster/main amd64 bioperl all 1.7.2-3 [418 kB] Get:41 http://deb.debian.org/debian buster/main amd64 ncbi-data all 6.1.20170106+dfsg1-0+deb10u2 [3552 kB] Get:42 http://deb.debian.org/debian buster/main amd64 libgomp1 amd64 8.3.0-6 [75.8 kB] Get:43 http://deb.debian.org/debian buster/main amd64 liblmdb0 amd64 0.9.22-1 [45.0 kB] Get:44 http://deb.debian.org/debian buster/main amd64 libmbedcrypto3 amd64 2.16.0-1 [209 kB] Get:45 http://deb.debian.org/debian buster/main amd64 libmbedx509-0 amd64 2.16.0-1 [91.4 kB] Get:46 http://deb.debian.org/debian buster/main amd64 libmbedtls12 amd64 2.16.0-1 [130 kB] Get:47 http://deb.debian.org/debian buster/main amd64 ncbi-blast+ amd64 2.8.1-1+deb10u1 [10.9 MB] Get:48 http://deb.debian.org/debian buster/main amd64 ncbi-blast+-legacy all 2.8.1-1+deb10u1 [10.6 kB] Get:49 http://deb.debian.org/debian buster/main amd64 blast2 all 1:2.8.1-1+deb10u1 [10.1 kB] Get:50 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1n-0+deb10u3 [855 kB] Get:51 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get:52 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get:53 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get:54 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get:55 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get:56 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get:57 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get:58 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u4 [65.9 kB] Get:59 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u4 [122 kB] Get:60 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u4 [369 kB] Get:61 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u4 [158 kB] Get:62 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u6 [325 kB] Get:63 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:64 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:65 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:66 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:67 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:68 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:69 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:70 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:71 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u5 [1160 kB] Get:72 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get:73 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get:74 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get:75 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get:76 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get:77 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get:78 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.16+8-1~deb10u1 [37.3 MB] Get:79 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get:80 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get:81 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:82 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:83 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get:84 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:85 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:86 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get:87 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get:88 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:89 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get:90 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get:91 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get:92 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get:93 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:94 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:95 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:96 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:97 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:98 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:99 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get:100 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:101 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:102 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get:103 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:104 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get:105 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get:106 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get:107 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:108 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:109 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get:110 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get:111 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get:112 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get:113 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get:114 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:115 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:116 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get:117 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:118 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:119 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get:120 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get:121 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:122 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.16+8-1~deb10u1 [174 kB] Get:123 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get:124 http://deb.debian.org/debian buster/main amd64 disulfinder-data all 1.2.11-8 [1126 kB] Get:125 http://deb.debian.org/debian buster/main amd64 disulfinder amd64 1.2.11-8 [238 kB] Get:126 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:127 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:128 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:129 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:130 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get:131 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get:132 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get:133 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:134 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:135 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:136 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:137 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get:138 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:139 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get:140 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u2 [63.9 kB] Get:141 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get:142 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get:143 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get:144 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get:145 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get:146 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get:147 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get:148 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get:149 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get:150 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get:151 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:152 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get:153 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:154 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:155 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:156 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:157 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get:158 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get:159 http://deb.debian.org/debian buster/main amd64 hmmer amd64 3.2.1+dfsg-1 [1169 kB] Get:160 http://deb.debian.org/debian buster/main amd64 libpvm3 amd64 3.4.6-2 [90.1 kB] Get:161 http://deb.debian.org/debian buster/main amd64 libsquid1 amd64 1.9g+cvs20050121-11 [76.9 kB] Get:162 http://deb.debian.org/debian buster/main amd64 hmmer2 amd64 2.3.2+dfsg-6 [1654 kB] Get:163 http://deb.debian.org/debian buster/main amd64 libfann2 amd64 2.2.0+ds-5 [66.8 kB] Get:164 http://deb.debian.org/debian buster/main amd64 libai-fann-perl amd64 0.10-4+b1 [28.7 kB] Get:165 http://deb.debian.org/debian buster/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:166 http://deb.debian.org/debian buster/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:167 http://deb.debian.org/debian buster/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:168 http://deb.debian.org/debian buster/main amd64 libfile-chdir-perl all 0.1008-1 [13.3 kB] Get:169 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get:170 http://deb.debian.org/debian buster/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:171 http://deb.debian.org/debian buster/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:172 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:173 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:174 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:175 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:176 http://deb.debian.org/debian buster/main amd64 libparse-recdescent-perl all 1.967015+dfsg-2 [159 kB] Get:177 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:178 http://deb.debian.org/debian buster/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:179 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:180 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:181 http://deb.debian.org/debian buster/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:182 http://deb.debian.org/debian buster/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:183 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get:184 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get:185 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:186 http://deb.debian.org/debian buster/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:187 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+deb10u1 [308 kB] Get:188 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:189 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get:190 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:191 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:192 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:193 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get:194 http://deb.debian.org/debian buster/main amd64 libxml-parser-perl amd64 2.44-4 [213 kB] Get:195 http://deb.debian.org/debian buster/main amd64 libxml-twig-perl all 1:3.50-1.1 [179 kB] Get:196 http://deb.debian.org/debian buster/main amd64 libxml-xpath-perl all 1.44-1 [69.5 kB] Get:197 http://deb.debian.org/debian buster/main amd64 libgraphviz-perl all 2.22-1 [107 kB] Get:198 http://deb.debian.org/debian buster/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:199 http://deb.debian.org/debian buster/main amd64 libgo-perl all 0.15-7 [267 kB] Get:200 http://deb.debian.org/debian buster/main amd64 libgslcblas0 amd64 2.5+dfsg-6 [101 kB] Get:201 http://deb.debian.org/debian buster/main amd64 libgsl23 amd64 2.5+dfsg-6 [880 kB] Get:202 http://deb.debian.org/debian buster/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:203 http://deb.debian.org/debian buster/main amd64 librg-exception-perl all 1.0.3-4 [3432 B] Get:204 http://deb.debian.org/debian buster/main amd64 librg-reprof-bundle-perl all 1.0.1-6 [7481 kB] Get:205 http://deb.debian.org/debian buster/main amd64 profphd-utils amd64 1.0.10-5 [266 kB] Get:206 http://deb.debian.org/debian buster/main amd64 librg-utils-perl all 1.0.43-6 [111 kB] Get:207 http://deb.debian.org/debian buster/main amd64 make amd64 4.2.1-1.2 [341 kB] Get:208 http://deb.debian.org/debian buster/main amd64 metastudent-data all 2.0.1-4 [225 MB] Get:209 http://deb.debian.org/debian buster/main amd64 metastudent all 2.0.1-6 [5994 kB] Get:210 http://deb.debian.org/debian buster/main amd64 ncbi-seg amd64 0.0.20000620-5 [78.8 kB] Get:211 http://deb.debian.org/debian buster/main amd64 ncoils amd64 2002-7 [21.9 kB] Get:212 http://deb.debian.org/debian buster/main amd64 profnet-norsnet amd64 1.0.22-6 [44.3 kB] Get:213 http://deb.debian.org/debian buster/main amd64 norsnet all 1.0.17-4 [44.7 kB] Get:214 http://deb.debian.org/debian buster/main amd64 norsp all 1.0.6-4 [283 kB] Get:215 http://deb.debian.org/debian buster/main amd64 predictnls all 1.0.20-5 [1404 kB] Get:216 http://deb.debian.org/debian buster/main amd64 profnet-bval amd64 1.0.22-6 [45.1 kB] Get:217 http://deb.debian.org/debian buster/main amd64 profbval all 1.0.22-6 [60.7 kB] Get:218 http://deb.debian.org/debian buster/main amd64 profnet-isis amd64 1.0.22-6 [107 kB] Get:219 http://deb.debian.org/debian buster/main amd64 profisis all 1.0.11-5 [63.1 kB] Get:220 http://deb.debian.org/debian buster/main amd64 profnet-prof amd64 1.0.22-6 [106 kB] Get:221 http://deb.debian.org/debian buster/main amd64 profphd-net amd64 1.0.22-6 [146 kB] Get:222 http://deb.debian.org/debian buster/main amd64 profphd all 1.0.42-3 [4510 kB] Get:223 http://deb.debian.org/debian buster/main amd64 proftmb amd64 1.1.12-8 [392 kB] Get:224 http://deb.debian.org/debian buster/main amd64 reprof all 1.0.1-6 [18.0 kB] Get:225 http://deb.debian.org/debian buster/main amd64 predictprotein all 1.1.08-1 [58.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 366 MB in 34s (10.9 MB/s) Selecting previously unselected package perl-modules-5.28. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6462 files and directories currently installed.) Preparing to unpack .../00-perl-modules-5.28_5.28.1-6+deb10u1_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6+deb10u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../01-libgdbm6_1.18.1-4_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-4) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../02-libgdbm-compat4_1.18.1-4_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-4) ... Selecting previously unselected package libperl5.28:amd64. Preparing to unpack .../03-libperl5.28_5.28.1-6+deb10u1_amd64.deb ... Unpacking libperl5.28:amd64 (5.28.1-6+deb10u1) ... Selecting previously unselected package perl. Preparing to unpack .../04-perl_5.28.1-6+deb10u1_amd64.deb ... Unpacking perl (5.28.1-6+deb10u1) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../05-libpython2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../06-python2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../07-python2-minimal_2.7.16-1_amd64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../08-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../09-libssl1.1_1.1.1n-0+deb10u3_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../10-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../11-libexpat1_2.2.6-2+deb10u4_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u4) ... Selecting previously unselected package readline-common. Preparing to unpack .../12-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../13-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../14-libsqlite3-0_3.27.2-3+deb10u1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:amd64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython2-stdlib:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9245 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9278 files and directories currently installed.) Preparing to unpack .../000-python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... 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Setting up perl-modules-5.28 (5.28.1-6+deb10u1) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u4) ... Setting up libxdot4 (2.40.1-6+deb10u1) ... Setting up liblmdb0:amd64 (0.9.22-1) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1+deb10u2) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpvm3:amd64 (3.4.6-2) ... Setting up mime-support (3.62) ... Setting up disulfinder-data (1.2.11-8) ... Setting up java-common (0.71) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libgslcblas0:amd64 (2.5+dfsg-6) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.1.0-1) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u3) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up liblab-gamut1 (2.40.1-6+deb10u1) ... Setting up disulfinder (1.2.11-8) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.5.0-3) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up ncoils (2002-7) ... Setting up libgomp1:amd64 (8.3.0-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u4) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libasound2-data (1.1.8-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up make (4.2.1-1.2) ... Setting up ncbi-seg (0.0.20000620-5) ... 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Setting up libmbedcrypto3:amd64 (2.16.0-1) ... Setting up libthai-data (0.1.28-2) ... Setting up netbase (5.6) ... Setting up libcdt5 (2.40.1-6+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u4) ... Setting up libcgraph6 (2.40.1-6+deb10u1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up profnet-prof (1.0.22-6) ... Setting up libfann2:amd64 (2.2.0+ds-5) ... Setting up libdivsufsort3:amd64 (2.0.1-4) ... Setting up openssl (1.1.1n-0+deb10u3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up metastudent-data (2.0.1-4) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libgdbm6:amd64 (1.18.1-4) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up proftmb (1.1.12-8) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libmbedx509-0:amd64 (2.16.0-1) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libmbedtls12:amd64 (2.16.0-1) ... Setting up profphd-utils (1.0.10-5) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u5) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up profnet-isis (1.0.22-6) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up profphd-net (1.0.22-6) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up profnet-bval (1.0.22-6) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up profnet-norsnet (1.0.22-6) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u4) ... Setting up libgdbm-compat4:amd64 (1.18.1-4) ... Setting up ucf (3.0038+nmu1) ... Setting up libperl5.28:amd64 (5.28.1-6+deb10u1) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up hmmer (3.2.1+dfsg-1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up norsnet (1.0.17-4) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python2 (2.7.16-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up perl (5.28.1-6+deb10u1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libio-html-perl (1.001-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2+deb10u1) ... Setting up norsp (1.0.6-4) ... Setting up libcups2:amd64 (2.2.10-6+deb10u6) ... Setting up libparse-recdescent-perl (1.967015+dfsg-2) ... Setting up libfile-chdir-perl (0.1008-1) ... Setting up libsub-uplevel-perl (0.2800-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up python (2.7.16-1) ... Setting up liburi-perl (1.76-1) ... Setting up profbval (1.0.22-6) ... Setting up librg-exception-perl (1.0.3-4) ... Setting up libnet-ssleay-perl (1.85-2+deb10u1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libtest-deep-perl (1.128-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libalgorithm-diff-perl (1.19.03-2) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnet-http-perl (6.18-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up predictnls (1.0.20-5) ... Setting up libexception-class-perl (1.44-1) ... Setting up libai-fann-perl (0.10-4+b1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up profisis (1.0.11-5) ... Setting up libyaml-perl (1.27-1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up ncbi-blast+ (2.8.1-1+deb10u1) ... Setting up libio-string-perl (1.08-3) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up librg-utils-perl (1.0.43-6) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up libbio-perl-perl (1.7.2-3) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up librg-reprof-bundle-perl (1.0.1-6) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up reprof (1.0.1-6) ... Setting up ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libtest-differences-perl (0.65-1) ... Setting up profphd (1.0.42-3) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up blast2 (1:2.8.1-1+deb10u1) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up libtest-most-perl (0.35-1) ... Setting up bioperl (1.7.2-3) ... Setting up default-jre-headless (2:1.11-71) ... Setting up openjdk-11-jre-headless:amd64 (11.0.16+8-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.16+8-1~deb10u1) ... Setting up default-jre (2:1.11-71) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libwww-perl (6.36-2) ... Setting up libxml-parser-perl (2.44-4) ... Setting up libxml-twig-perl (1:3.50-1.1) ... Setting up libxml-xpath-perl (1.44-1) ... Setting up libgraphviz-perl (2.22-1) ... Setting up libgo-perl (0.15-7) ... Setting up metastudent (2.0.1-6) ... Setting up predictprotein (1.1.08-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 1m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-y', 'install', 'predictprotein'] 1m31.2s INFO: Running scripts post_install 1m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_install_exceptions'] 1m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_install_exceptions'] 1m31.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m31.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m31.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpplv9_7ds to buster-next 1m31.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main deb http://security.debian.org buster/updates main deb http://deb.debian.org/debian/ buster-updates main deb http://deb.debian.org/debian/ buster-proposed-updates main 1m31.9s INFO: Running scripts pre_distupgrade 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_exceptions'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_exceptions'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m31.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m31.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'update'] 1m34.1s DUMP: Get:1 http://security.debian.org buster/updates InRelease [34.8 kB] Hit:2 http://deb.debian.org/debian buster InRelease Get:3 http://deb.debian.org/debian buster-updates InRelease [56.6 kB] Get:4 http://security.debian.org buster/updates/main amd64 Packages [541 kB] Get:5 http://security.debian.org buster/updates/main Translation-en [292 kB] Get:6 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB] Get:7 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B] Get:8 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B] Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B] Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B] Fetched 1001 kB in 1s (912 kB/s) Reading package lists... 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'update'] 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-yf', 'dist-upgrade'] 1m50.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debian-archive-keyring libavahi-client3 libavahi-common-data libavahi-common3 libbz2-1.0 libc-bin libc6 libcups2 libdbus-1-3 libexpat1 libgif7 libglib2.0-0 libgnutls30 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libmbedcrypto3 libmbedtls12 libmbedx509-0 libncursesw6 libnss3 libpixman-1-0 libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.1 libsystemd0 libtasn1-6 libtiff5 libtinfo6 libudev1 libwebp6 libx11-6 libx11-data libx11-xcb1 libxpm4 ncurses-base ncurses-bin openjdk-11-jre openjdk-11-jre-headless openssl python2.7 python2.7-minimal tzdata zlib1g 46 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 58.2 MB of archives. After this operation, 120 kB of additional disk space will be used. Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB] Get:2 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB] Get:3 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB] Get:4 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB] Get:5 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB] Get:6 http://security.debian.org buster/updates/main amd64 python2.7 amd64 2.7.16-2+deb10u2 [306 kB] Get:7 http://security.debian.org buster/updates/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u5 [1551 kB] Get:8 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB] Get:9 http://security.debian.org buster/updates/main amd64 libexpat1 amd64 2.2.6-2+deb10u6 [108 kB] Get:10 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB] Get:11 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB] Get:12 http://security.debian.org buster/updates/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u2 [641 kB] Get:13 http://security.debian.org buster/updates/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u2 [1911 kB] Get:14 http://security.debian.org buster/updates/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u2 [1367 kB] Get:15 http://security.debian.org buster/updates/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u2 [396 kB] Get:16 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB] Get:17 http://security.debian.org buster/updates/main amd64 debian-archive-keyring all 2019.1+deb10u2 [110 kB] Get:18 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB] Get:19 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB] Get:20 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB] Get:21 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB] Get:22 http://security.debian.org buster/updates/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u5 [159 kB] Get:23 http://security.debian.org buster/updates/main amd64 libkrb5-3 amd64 1.17-3+deb10u5 [369 kB] Get:24 http://security.debian.org buster/updates/main amd64 libkrb5support0 amd64 1.17-3+deb10u5 [66.0 kB] Get:25 http://security.debian.org buster/updates/main amd64 libk5crypto3 amd64 1.17-3+deb10u5 [122 kB] Get:26 http://security.debian.org buster/updates/main amd64 libavahi-common-data amd64 0.7-4+deb10u3 [123 kB] Get:27 http://security.debian.org buster/updates/main amd64 libavahi-common3 amd64 0.7-4+deb10u3 [54.7 kB] Get:28 http://security.debian.org buster/updates/main amd64 libdbus-1-3 amd64 1.12.24-0+deb10u1 [218 kB] Get:29 http://security.debian.org buster/updates/main amd64 libavahi-client3 amd64 0.7-4+deb10u3 [58.4 kB] Get:30 http://security.debian.org buster/updates/main amd64 libcups2 amd64 2.2.10-6+deb10u8 [325 kB] Get:31 http://security.debian.org buster/updates/main amd64 libgif7 amd64 5.1.4-3+deb10u1 [43.4 kB] Get:32 http://security.debian.org buster/updates/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u4 [1259 kB] Get:33 http://security.debian.org buster/updates/main amd64 libmbedcrypto3 amd64 2.16.9-0~deb10u1 [220 kB] Get:34 http://security.debian.org buster/updates/main amd64 libmbedx509-0 amd64 2.16.9-0~deb10u1 [109 kB] Get:35 http://security.debian.org buster/updates/main amd64 libmbedtls12 amd64 2.16.9-0~deb10u1 [140 kB] Get:36 http://security.debian.org buster/updates/main amd64 libnss3 amd64 2:3.42.1-1+deb10u6 [1245 kB] Get:37 http://security.debian.org buster/updates/main amd64 libpixman-1-0 amd64 0.36.0-1+deb10u1 [234 kB] Get:38 http://security.debian.org buster/updates/main amd64 libwebp6 amd64 0.6.1-2+deb10u2 [262 kB] Get:39 http://security.debian.org buster/updates/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u7 [273 kB] Get:40 http://security.debian.org buster/updates/main amd64 libx11-data all 2:1.6.7-1+deb10u3 [299 kB] Get:41 http://security.debian.org buster/updates/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u3 [757 kB] Get:42 http://security.debian.org buster/updates/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u3 [191 kB] Get:43 http://security.debian.org buster/updates/main amd64 libxpm4 amd64 1:3.5.12-1+deb10u1 [50.0 kB] Get:44 http://security.debian.org buster/updates/main amd64 openjdk-11-jre amd64 11.0.18+10-1~deb10u1 [174 kB] Get:45 http://security.debian.org buster/updates/main amd64 openjdk-11-jre-headless amd64 11.0.18+10-1~deb10u1 [37.3 MB] Get:46 http://security.debian.org buster/updates/main amd64 openssl amd64 1.1.1n-0+deb10u5 [855 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.2 MB in 3s (17.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../libc6_2.28-10+deb10u2_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc6:amd64 (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u2_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc-bin (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u3_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u10_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libsystemd0:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../python2.7_2.7.16-2+deb10u2_amd64.deb ... Unpacking python2.7 (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../libssl1.1_1.1.1n-0+deb10u5_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u5) over (1.1.1n-0+deb10u3) ... Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../libexpat1_2.2.6-2+deb10u6_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u6) over (2.2.6-2+deb10u4) ... Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.27.2-3+deb10u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-3+deb10u2) over (3.27.2-3+deb10u1) ... Preparing to unpack .../libpython2.7-stdlib_2.7.16-2+deb10u2_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../python2.7-minimal_2.7.16-2+deb10u2_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../libpython2.7-minimal_2.7.16-2+deb10u2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17050 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u2_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u2) over (2019.1+deb10u1) ... Setting up debian-archive-keyring (2019.1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17056 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u10_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libudev1:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17056 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3+deb10u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3+deb10u1) over (4.13-3) ... Setting up libtasn1-6:amd64 (4.13-3+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17056 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u10_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u10) over (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17056 files and directories currently installed.) Preparing to unpack .../00-tzdata_2021a-0+deb10u11_all.deb ... Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ... Preparing to unpack .../01-libgssapi-krb5-2_1.17-3+deb10u5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u5) over (1.17-3+deb10u4) ... Preparing to unpack .../02-libkrb5-3_1.17-3+deb10u5_amd64.deb ... 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Unpacking libxpm4:amd64 (1:3.5.12-1+deb10u1) over (1:3.5.12-1) ... Preparing to unpack .../23-openjdk-11-jre_11.0.18+10-1~deb10u1_amd64.deb ... Unpacking openjdk-11-jre:amd64 (11.0.18+10-1~deb10u1) over (11.0.16+8-1~deb10u1) ... Preparing to unpack .../24-openjdk-11-jre-headless_11.0.18+10-1~deb10u1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.18+10-1~deb10u1) over (11.0.16+8-1~deb10u1) ... Preparing to unpack .../25-openssl_1.1.1n-0+deb10u5_amd64.deb ... Unpacking openssl (1.1.1n-0+deb10u5) over (1.1.1n-0+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u6) ... Setting up libpixman-1-0:amd64 (0.36.0-1+deb10u1) ... Setting up libx11-xcb1:amd64 (2:1.6.7-1+deb10u3) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u4) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1n-0+deb10u5) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u2) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u6) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u5) ... Setting up tzdata (2021a-0+deb10u11) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 15 05:06:31 UTC 2023. Universal Time is now: Sat Jul 15 05:06:31 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) ... Setting up libx11-data (2:1.6.7-1+deb10u3) ... Setting up python2.7-minimal (2.7.16-2+deb10u2) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u3) ... Setting up libdbus-1-3:amd64 (1.12.24-0+deb10u1) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u2) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u5) ... Setting up libgif7:amd64 (5.1.4-3+deb10u1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0~deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u3) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u5) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u7) ... Setting up openssl (1.1.1n-0+deb10u5) ... Setting up libxpm4:amd64 (1:3.5.12-1+deb10u1) ... Setting up libmbedx509-0:amd64 (2.16.9-0~deb10u1) ... Setting up libmbedtls12:amd64 (2.16.9-0~deb10u1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u3) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u2) ... Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u5) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u3) ... Setting up python2.7 (2.7.16-2+deb10u2) ... Setting up libcups2:amd64 (2.2.10-6+deb10u8) ... Setting up openjdk-11-jre-headless:amd64 (11.0.18+10-1~deb10u1) ... Installing new version of config file /etc/java-11-openjdk/jfr/default.jfc ... Installing new version of config file /etc/java-11-openjdk/jfr/profile.jfc ... Installing new version of config file /etc/java-11-openjdk/security/default.policy ... Installing new version of config file /etc/java-11-openjdk/security/java.security ... Setting up openjdk-11-jre:amd64 (11.0.18+10-1~deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... Processing triggers for mime-support (3.62) ... 1m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-yf', 'dist-upgrade'] 1m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m50.3s DUMP: 3cfe647738a7b18736b52aca63926adf - 1m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'show', '--no-all-versions', 'predictprotein'] 1m50.5s DUMP: Package: predictprotein Version: 1.1.08-1 Installed-Size: 171 Maintainer: Debian Med Packaging Team Architecture: all Depends: perl, blast2, bioperl, ncoils, disulfinder, hmmer, hmmer2, librg-exception-perl, librg-utils-perl, ncbi-seg, make, metastudent, norsnet, norsp, predictnls, profbval, profisis, profphd, proftmb, reprof Suggests: pp-popularity-contest, pp-cache-mgr (>= 1.0.3), predictprotein-nonfree Description-en: suite of protein sequence analysis tools PredictProtein is a sequence analysis suite providing prediction of protein structure and function. . PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations: * secondary structure * solvent accessibility * multiple sequence alignments * PROSITE sequence motifs * low-complexity regions * nuclear localisation signals * regions lacking regular structure (NORS) * unstructured loops * transmembrane helices * transmembrane beta barrels * coiled-coil regions * disulfide-bonds * disordered regions * B-value flexibility * protein-protein interaction sites * Gene Ontology terms Description-md5: 15a383a129e1bde1cac5bdfc464d4e20 Homepage: http://www.predictprotein.org Section: science Priority: optional Filename: pool/main/p/predictprotein/predictprotein_1.1.08-1_all.deb Size: 58928 MD5sum: 415a9b54617efa411a98f34cd1a3d001 SHA256: 9f2105368c35036f1f828ea14655a5a0e3bf8cd2504d26a32bb003b29e4b32aa 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'show', '--no-all-versions', 'predictprotein'] 1m50.5s INFO: apt-cache knows about the following packages: predictprotein 1m50.5s INFO: Running scripts pre_install 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_database-server'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_database-server'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_exceptions'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_exceptions'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_extras'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_extras'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy'] 1m50.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy'] 1m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy', 'predictprotein'] 1m50.6s DUMP: predictprotein: Installed: 1.1.08-1 Candidate: 1.1.08-1 Version table: *** 1.1.08-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m50.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy', 'predictprotein'] 1m50.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-y', 'install', 'predictprotein'] 1m51.1s DUMP: Reading package lists... Building dependency tree... Reading state information... predictprotein is already the newest version (1.1.08-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-y', 'install', 'predictprotein'] 1m51.1s INFO: Running scripts post_install 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_install_exceptions'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_install_exceptions'] 1m51.1s INFO: Running scripts post_distupgrade 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_exceptions'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_exceptions'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_zz_backports'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_distupgrade_zz_backports'] 1m51.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m52.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m52.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m52.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m52.7s INFO: Running scripts pre_install 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_database-server'] 1m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_database-server'] 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_exceptions'] 1m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_exceptions'] 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_extras'] 1m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_extras'] 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture'] 1m52.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture'] 1m52.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m52.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m52.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy'] 1m52.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m52.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy'] 1m52.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy', 'predictprotein'] 1m52.9s DUMP: predictprotein: Installed: 1.1.08-1 Candidate: 1.1.08-1 Version table: *** 1.1.08-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 1m52.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-cache', 'policy', 'predictprotein'] 1m52.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-y', 'install', 'predictprotein=1.1.08-1'] 1m53.3s DUMP: Reading package lists... Building dependency tree... Reading state information... predictprotein is already the newest version (1.1.08-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', '-y', 'install', 'predictprotein=1.1.08-1'] 1m53.3s INFO: Running scripts post_install 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_install_exceptions'] 1m53.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_install_exceptions'] 1m53.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m54.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 1m55.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', '-ac', '--ignore-obsolete'] 2m0.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', '-ac', '--ignore-obsolete'] 2m0.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m0.3s DUMP: 0.15.6 2m0.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m0.3s INFO: Running adequate version 0.15.6 now. 2m0.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'predictprotein'] 2m0.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'predictprotein'] 2m0.5s INFO: Running scripts pre_remove 2m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_exceptions'] 2m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/pre_remove_exceptions'] 2m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m5.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bioperl bioperl 1.7.2-3 install ok installed blast2 blast2 1:2.8.1-1+deb10u1 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed ca-certificates ca-certificates 20200601~deb10u2 install ok installed ca-certificates-java ca-certificates-java 20190405 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u2 install ok installed debianutils debianutils 4.8.6.1 install ok installed default-jre default-jre 2:1.11-71 install ok installed default-jre-headless default-jre-headless 2:1.11-71 install ok installed diffutils diffutils 1:3.7-3 install ok installed disulfinder disulfinder 1.2.11-8 install ok installed disulfinder-data disulfinder-data 1.2.11-8 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fontconfig fontconfig 2.13.1-2 install ok installed fontconfig-config fontconfig-config 2.13.1-2 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed graphviz graphviz 2.40.1-6+deb10u1 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hmmer hmmer 3.2.1+dfsg-1 install ok installed hmmer2 hmmer2 2.3.2+dfsg-6 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed java-common java-common 0.71 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libai-fann-perl libai-fann-perl 0.10-4+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.19.03-2 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libasound2:amd64 libasound2 1.1.8-1 install ok installed libasound2-data libasound2-data 1.1.8-1 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libavahi-client3:amd64 libavahi-client3 0.7-4+deb10u3 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.7-4+deb10u3 install ok installed libavahi-common3:amd64 libavahi-common3 0.7-4+deb10u3 install ok installed libbio-perl-perl libbio-perl-perl 1.7.2-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbsd0:amd64 libbsd0 0.9.1-2+deb10u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2 install ok installed libc-bin libc-bin 2.28-10+deb10u2 install ok installed libc6:amd64 libc6 2.28-10+deb10u2 install ok installed libcairo2:amd64 libcairo2 1.16.0-4+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.48-1 install ok installed libcdt5 libcdt5 2.40.1-6+deb10u1 install ok installed libcgraph6 libcgraph6 2.40.1-6+deb10u1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.08-3 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libconfig-inifiles-perl libconfig-inifiles-perl 3.000001-1 install ok installed libcups2:amd64 libcups2 2.2.10-6+deb10u8 install ok installed libdata-stag-perl libdata-stag-perl 0.14-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.24-0+deb10u1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0300-1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-4 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.97-1 install ok installed libdrm-common libdrm-common 2.4.97-1 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.97-1 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.97-1 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.97-1 install ok installed libdrm2:amd64 libdrm2 2.4.97-1 install ok installed libedit2:amd64 libedit2 3.1-20181209-1 install ok installed libelf1:amd64 libelf1 0.176-1.1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-1 install ok installed libexception-class-perl libexception-class-perl 1.44-1 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u6 install ok installed libexporter-tiny-perl libexporter-tiny-perl 1.002001-1 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfann2:amd64 libfann2 2.2.0+ds-5 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfile-chdir-perl libfile-chdir-perl 0.1008-1 install ok installed libfile-listing-perl libfile-listing-perl 6.04-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.1-2 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3.1+deb10u2 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgd3:amd64 libgd3 2.2.5-5.2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.18.1-4 install ok installed libgdbm6:amd64 libgdbm6 1.18.1-4 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgif7:amd64 libgif7 5.1.4-3+deb10u1 install ok installed libgl1:amd64 libgl1 1.1.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 18.3.6-2+deb10u1 install ok installed libglapi-mesa:amd64 libglapi-mesa 18.3.6-2+deb10u1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.3-2+deb10u4 install ok installed libglvnd0:amd64 libglvnd0 1.1.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 18.3.6-2+deb10u1 install ok installed libglx0:amd64 libglx0 1.1.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10 install ok installed libgo-perl libgo-perl 0.15-7 install ok installed libgomp1:amd64 libgomp1 8.3.0-6 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.13-7 install ok installed libgraphviz-perl libgraphviz-perl 2.22-1 install ok installed libgsl23:amd64 libgsl23 2.5+dfsg-6 install ok installed libgslcblas0:amd64 libgslcblas0 2.5+dfsg-6 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.17-3+deb10u5 install ok installed libgts-0.7-5:amd64 libgts-0.7-5 0.7.6+darcs121130-4 install ok installed libgvc6 libgvc6 2.40.1-6+deb10u1 install ok installed libgvpr2 libgvpr2 2.40.1-6+deb10u1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 2.3.1-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libhtml-parser-perl libhtml-parser-perl 3.72-3+b3 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.20-3 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-2 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.04-1 install ok installed libhttp-date-perl libhttp-date-perl 6.02-1 install ok installed libhttp-message-perl libhttp-message-perl 6.18-1 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libio-html-perl libio-html-perl 1.001-1 install ok installed libio-pty-perl libio-pty-perl 1:1.08-1.1+b5 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.060-3 install ok installed libio-string-perl libio-string-perl 1.08-3 install ok installed libipc-run-perl libipc-run-perl 20180523.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.17-3+deb10u5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.17-3+deb10u5 install ok installed libkrb5support0:amd64 libkrb5support0 1.17-3+deb10u5 install ok installed liblab-gamut1 liblab-gamut1 2.40.1-6+deb10u1 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed liblist-moreutils-perl liblist-moreutils-perl 0.416-1+b4 install ok installed libllvm7:amd64 libllvm7 1:7.0.1-8+deb10u2 install ok installed liblmdb0:amd64 liblmdb0 0.9.22-1 install ok installed libltdl7:amd64 libltdl7 2.4.6-9 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.02-1 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.07-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0~deb10u1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0~deb10u1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0~deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3 install ok installed libnet-http-perl libnet-http-perl 6.18-1 install ok installed libnet-ssleay-perl libnet-ssleay-perl 1.85-2+deb10u1 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.42.1-1+deb10u6 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-8~deb10u1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-8~deb10u1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-8~deb10u1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967015+dfsg-2 install ok installed libpathplan4 libpathplan4 2.40.1-6+deb10u1 install ok installed libpciaccess0:amd64 libpciaccess0 0.14-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.24-1 install ok installed libperl5.28:amd64 libperl5.28 5.28.1-6+deb10u1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.36.0-1+deb10u1 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpvm3:amd64 libpvm3 3.4.6-2 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u2 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u2 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librg-exception-perl librg-exception-perl 1.0.3-4 install ok installed librg-reprof-bundle-perl librg-reprof-bundle-perl 1.0.1-6 install ok installed librg-utils-perl librg-utils-perl 1.0.43-6 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsensors-config libsensors-config 1:3.5.0-3 install ok installed libsensors5:amd64 libsensors5 1:3.5.0-3 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u2 install ok installed libsquid1 libsquid1 1.9g+cvs20050121-11 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u5 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-1 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1 install ok installed libtest-deep-perl libtest-deep-perl 1.128-1 install ok installed libtest-differences-perl libtest-differences-perl 0.65-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-1 install ok installed libtest-most-perl libtest-most-perl 0.35-1 install ok installed libtest-warn-perl libtest-warn-perl 0.36-1 install ok installed libtext-diff-perl libtext-diff-perl 1.45-1 install ok installed libthai-data libthai-data 0.1.28-2 install ok installed libthai0:amd64 libthai0 0.1.28-2 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u7 install ok installed libtimedate-perl libtimedate-perl 2.3000-2+deb10u1 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3 install ok installed libtry-tiny-perl libtry-tiny-perl 0.30-1 install ok installed libudev1:amd64 libudev1 241-7~deb10u10 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed liburi-perl liburi-perl 1.76-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u2 install ok installed libwww-perl libwww-perl 6.36-2 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.7-1+deb10u3 install ok installed libx11-data libx11-data 2:1.6.7-1+deb10u3 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.6.7-1+deb10u3 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.13.1-2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.13.1-2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.13.1-2 install ok installed libxcb-present0:amd64 libxcb-present0 1.13.1-2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13.1-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13.1-2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.13.1-2 install ok installed libxcb1:amd64 libxcb1 1.13.1-2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.4-3+b3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxdot4 libxdot4 2.40.1-6+deb10u1 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxfixes3:amd64 libxfixes3 1:5.0.3-1 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxml-parser-perl libxml-parser-perl 2.44-4 install ok installed libxml-twig-perl libxml-twig-perl 1:3.50-1.1 install ok installed libxml-xpath-perl libxml-xpath-perl 1.44-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2+b3 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1+deb10u1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1+b3 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libyaml-perl libyaml-perl 1.27-1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 10.2019051400 install ok installed make make 4.2.1-1.2 install ok installed mawk mawk 1.3.3-17+b3 install ok installed metastudent metastudent 2.0.1-6 install ok installed metastudent-data metastudent-data 2.0.1-4 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncbi-blast+ ncbi-blast+ 2.8.1-1+deb10u1 install ok installed ncbi-blast+-legacy ncbi-blast+-legacy 2.8.1-1+deb10u1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-0+deb10u2 install ok installed ncbi-seg ncbi-seg 0.0.20000620-5 install ok installed ncoils ncoils 2002-7 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3 install ok installed netbase netbase 5.6 install ok installed norsnet norsnet 1.0.17-4 install ok installed norsp norsp 1.0.6-4 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.18+10-1~deb10u1 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.18+10-1~deb10u1 install ok installed openssl openssl 1.1.1n-0+deb10u5 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.28.1-6+deb10u1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed perl-modules-5.28 perl-modules-5.28 5.28.1-6+deb10u1 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 3 install ok installed predictnls predictnls 1.0.20-5 install ok installed predictprotein predictprotein 1.1.08-1 install ok installed profbval profbval 1.0.22-6 install ok installed profisis profisis 1.0.11-5 install ok installed profnet-bval profnet-bval 1.0.22-6 install ok installed profnet-isis profnet-isis 1.0.22-6 install ok installed profnet-norsnet profnet-norsnet 1.0.22-6 install ok installed profnet-prof profnet-prof 1.0.22-6 install ok installed profphd profphd 1.0.42-3 install ok installed profphd-net profphd-net 1.0.22-6 install ok installed profphd-utils profphd-utils 1.0.10-5 install ok installed proftmb proftmb 1.1.12-8 install ok installed python python 2.7.16-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u2 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u2 install ok installed readline-common readline-common 7.0-5 install ok installed reprof reprof 1.0.1-6 install ok installed sed sed 4.7-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u11 install ok installed ucf ucf 3.0038+nmu1 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2 2m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'remove', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libalgorithm-diff-perl', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcdt5', 'libcgraph6', 'libclass-data-inheritable-perl', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdevel-stacktrace-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfann2:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpvm3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsquid1', 'libssl1.1:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-perl', 'lsb-base', 'make', 'metastudent', 'metastudent-data', 'mime-support', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'reprof', 'sensible-utils', 'ucf', 'x11-common', 'predictprotein'] 2m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl blast2 ca-certificates ca-certificates-java default-jre default-jre-headless disulfinder disulfinder-data fontconfig fontconfig-config fonts-dejavu-core graphviz hmmer hmmer2 java-common libai-fann-perl libalgorithm-diff-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libbio-perl-perl libbsd0 libcairo2 libcapture-tiny-perl libcdt5 libcgraph6 libclass-data-inheritable-perl libconfig-inifiles-perl libcups2 libdata-stag-perl libdatrie1 libdbus-1-3 libdevel-stacktrace-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libencode-locale-perl libexception-class-perl libexpat1 libexporter-tiny-perl libfann2 libfile-chdir-perl libfile-listing-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgdbm-compat4 libgdbm6 libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgo-perl libgomp1 libgraphite2-3 libgraphviz-perl libgsl23 libgslcblas0 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libipc-run-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 liblist-moreutils-perl libllvm7 liblmdb0 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmbedcrypto3 libmbedtls12 libmbedx509-0 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparse-recdescent-perl libpathplan4 libpciaccess0 libpcsclite1 libperl5.28 libpixman-1-0 libpng16-16 libpvm3 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 librg-exception-perl librg-reprof-bundle-perl librg-utils-perl libsensors-config libsensors5 libsm6 libsqlite3-0 libsquid1 libssl1.1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 libtiff5 libtimedate-perl libtry-tiny-perl liburi-perl libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxdamage1 libxdmcp6 libxdot4 libxext6 libxfixes3 libxi6 libxml-parser-perl libxml-twig-perl libxml-xpath-perl libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-perl lsb-base make metastudent metastudent-data mime-support ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-seg ncoils netbase norsnet norsp openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.28 perl-openssl-defaults predictnls predictprotein profbval profisis profnet-bval profnet-isis profnet-norsnet profnet-prof profphd profphd-net profphd-utils proftmb python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common reprof sensible-utils ucf x11-common 0 upgraded, 0 newly installed, 225 to remove and 0 not upgraded. After this operation, 1599 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17058 files and directories currently installed.) Removing predictprotein (1.1.08-1) ... Removing bioperl (1.7.2-3) ... Removing metastudent (2.0.1-6) ... Removing blast2 (1:2.8.1-1+deb10u1) ... Removing default-jre (2:1.11-71) ... Removing openjdk-11-jre:amd64 (11.0.18+10-1~deb10u1) ... Removing default-jre-headless (2:1.11-71) ... Removing libgo-perl (0.15-7) ... Removing libgraphviz-perl (2.22-1) ... Removing libxml-xpath-perl (1.44-1) ... Removing disulfinder (1.2.11-8) ... Removing disulfinder-data (1.2.11-8) ... Removing graphviz (2.40.1-6+deb10u1) ... Removing libgvc6 (2.40.1-6+deb10u1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Removing fontconfig (2.13.1-2) ... Removing libgd3:amd64 (2.2.5-5.2) ... Removing libcairo2:amd64 (1.16.0-4+deb10u1) ... Removing hmmer (3.2.1+dfsg-1) ... Removing hmmer2 (2.3.2+dfsg-6) ... Removing reprof (1.0.1-6) ... Removing librg-reprof-bundle-perl (1.0.1-6) ... Removing libai-fann-perl (0.10-4+b1) ... Removing libtest-most-perl (0.35-1) ... Removing libtest-differences-perl (0.65-1) ... Removing libtext-diff-perl (1.45-1) ... Removing libalgorithm-diff-perl (1.19.03-2) ... Removing libbio-perl-perl (1.7.2-3) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxpm4:amd64 (1:3.5.12-1+deb10u1) ... Removing libgl1:amd64 (1.1.0-1) ... Removing libglx0:amd64 (1.1.0-1) ... Removing libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Removing libxcb-sync1:amd64 (1.13.1-2) ... Removing libxmu6:amd64 (2:1.1.2-2+b3) ... Removing libxt6:amd64 (1:1.1.5-1+b3) ... Removing libcapture-tiny-perl (0.48-1) ... Removing libgvpr2 (2.40.1-6+deb10u1) ... Removing libcgraph6 (2.40.1-6+deb10u1) ... Removing libcdt5 (2.40.1-6+deb10u1) ... Removing libexception-class-perl (1.44-1) ... Removing libclass-data-inheritable-perl (0.08-3) ... Removing profisis (1.0.11-5) ... Removing predictnls (1.0.20-5) ... Removing libconfig-inifiles-perl (3.000001-1) ... Removing libdata-stag-perl (0.14-2) ... Removing libthai0:amd64 (0.1.28-2) ... Removing libdatrie1:amd64 (0.2.12-2) ... Removing libdevel-stacktrace-perl (2.0300-1) ... Removing libdivsufsort3:amd64 (2.0.1-4) ... Removing libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Removing libdrm-amdgpu1:amd64 (2.4.97-1) ... Removing libdrm-radeon1:amd64 (2.4.97-1) ... Removing libdrm-nouveau2:amd64 (2.4.97-1) ... Removing libdrm-intel1:amd64 (2.4.97-1) ... Removing libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Removing libedit2:amd64 (3.1-20181209-1) ... Removing libelf1:amd64 (0.176-1.1) ... Removing ncbi-blast+-legacy (2.8.1-1+deb10u1) ... Removing ncbi-blast+ (2.8.1-1+deb10u1) ... Removing python (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing python2.7 (2.7.16-2+deb10u2) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing profphd (1.0.42-3) ... Removing librg-utils-perl (1.0.43-6) ... Removing liblist-moreutils-perl (0.416-1+b4) ... Removing libexporter-tiny-perl (1.002001-1) ... Removing libfann2:amd64 (2.2.0+ds-5) ... Removing libfile-chdir-perl (0.1008-1) ... Removing libfribidi0:amd64 (1.0.5-3.1+deb10u2) ... Removing libyaml-perl (1.27-1) ... Removing profbval (1.0.22-6) ... Removing libxml-twig-perl (1:3.50-1.1) ... Removing norsp (1.0.6-4) ... Removing profphd-utils (1.0.10-5) ... Removing profphd-net (1.0.22-6) ... Removing libgif7:amd64 (5.1.4-3+deb10u1) ... Removing libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Removing libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Removing libglvnd0:amd64 (1.1.0-1) ... Removing libgomp1:amd64 (8.3.0-6) ... Removing proftmb (1.1.12-8) ... Removing libgsl23:amd64 (2.5+dfsg-6) ... Removing libgslcblas0:amd64 (2.5+dfsg-6) ... Removing libipc-run-perl (20180523.0-1) ... Removing libio-pty-perl (1:1.08-1.1+b5) ... Removing libio-string-perl (1.08-3) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing liblab-gamut1 (2.40.1-6+deb10u1) ... Removing liblmdb0:amd64 (0.9.22-1) ... Removing libltdl7:amd64 (2.4.6-9) ... Removing libmbedtls12:amd64 (2.16.9-0~deb10u1) ... Removing libmbedx509-0:amd64 (2.16.9-0~deb10u1) ... Removing libmbedcrypto3:amd64 (2.16.9-0~deb10u1) ... Removing libparse-recdescent-perl (1.967015+dfsg-2) ... Removing libpathplan4 (2.40.1-6+deb10u1) ... Removing libpciaccess0:amd64 (0.14-1) ... Removing libpixman-1-0:amd64 (0.36.0-1+deb10u1) ... Removing libsquid1 (1.9g+cvs20050121-11) ... Removing libpvm3:amd64 (3.4.6-2) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7-minimal (2.7.16-2+deb10u2) ... Removing profnet-prof (1.0.22-6) ... Removing librg-exception-perl (1.0.3-4) ... Removing libsensors5:amd64 (1:3.5.0-3) ... Removing libsensors-config (1:3.5.0-3) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libtest-warn-perl (0.36-1) ... Removing libtest-exception-perl (0.43-1) ... Removing libsub-uplevel-perl (0.2800-1) ... Removing libtest-deep-perl (1.128-1) ... Removing libthai-data (0.1.28-2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u2) ... Removing libx11-xcb1:amd64 (2:1.6.7-1+deb10u3) ... Removing libxcb-dri2-0:amd64 (1.13.1-2) ... Removing libxcb-dri3-0:amd64 (1.13.1-2) ... Removing libxcb-glx0:amd64 (1.13.1-2) ... Removing libxcb-present0:amd64 (1.13.1-2) ... Removing libxcb-render0:amd64 (1.13.1-2) ... Removing libxcb-shm0:amd64 (1.13.1-2) ... Removing libxdamage1:amd64 (1:1.1.4-3+b3) ... Removing libxdot4 (2.40.1-6+deb10u1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libxfixes3:amd64 (1:5.0.3-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing make (4.2.1-1.2) ... Removing metastudent-data (2.0.1-4) ... Removing ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... Removing ncbi-seg (0.0.20000620-5) ... Removing ncoils (2002-7) ... Removing norsnet (1.0.17-4) ... Removing profnet-bval (1.0.22-6) ... Removing profnet-isis (1.0.22-6) ... Removing profnet-norsnet (1.0.22-6) ... Removing libxml-parser-perl (2.44-4) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libdrm2:amd64 (2.4.97-1) ... Removing libdrm-common (2.4.97-1) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u2) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) ... find: '/usr/lib/python2.7': No such file or directory Removing libquadmath0:amd64 (8.3.0-6) ... Removing libreadline7:amd64 (7.0-5) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (10.2019051400) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Removing libx11-6:amd64 (2:1.6.7-1+deb10u3) ... Removing libxcb1:amd64 (1.13.1-2) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-2+deb10u1) ... Removing libx11-data (2:1.6.7-1+deb10u3) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Removing openjdk-11-jre-headless:amd64 (11.0.18+10-1~deb10u1) ... Removing libwww-perl (6.36-2) ... Removing libfontconfig1:amd64 (2.13.1-2) ... Removing fontconfig-config (2.13.1-2) ... Removing fonts-dejavu-core (2.37-1) ... Removing java-common (0.71) ... Removing libasound2:amd64 (1.1.8-1) ... Removing libasound2-data (1.1.8-1) ... Removing libcups2:amd64 (2.2.10-6+deb10u8) ... Removing libavahi-client3:amd64 (0.7-4+deb10u3) ... Removing libavahi-common3:amd64 (0.7-4+deb10u3) ... Removing libavahi-common-data:amd64 (0.7-4+deb10u3) ... Removing libdbus-1-3:amd64 (1.12.24-0+deb10u1) ... Removing libhttp-negotiate-perl (6.01-1) ... Removing libexpat1:amd64 (2.2.6-2+deb10u6) ... Removing libfile-listing-perl (6.04-1) ... Removing libharfbuzz0b:amd64 (2.3.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libglib2.0-0:amd64 (2.58.3-2+deb10u4) ... Removing libgraphite2-3:amd64 (1.3.13-7) ... Removing libgssapi-krb5-2:amd64 (1.17-3+deb10u5) ... Removing libhtml-tree-perl (5.07-2) ... Removing libhtml-parser-perl (3.72-3+b3) ... Removing libhtml-tagset-perl (3.20-3) ... Removing libhttp-cookies-perl (6.04-1) ... Removing liblwp-protocol-https-perl (6.07-2) ... Removing libio-socket-ssl-perl (2.060-3) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libkrb5-3:amd64 (1.17-3+deb10u5) ... Removing libk5crypto3:amd64 (1.17-3+deb10u5) ... Removing libkrb5support0:amd64 (1.17-3+deb10u5) ... Removing libkeyutils1:amd64 (1.6-6) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing libnet-http-perl (6.18-1) ... Removing libnet-ssleay-perl (1.85-2+deb10u1) ... Removing libpcsclite1:amd64 (1.8.24-1) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing perl-openssl-defaults:amd64 (3) ... Removing libtry-tiny-perl (0.30-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing netbase (5.6) ... Removing ucf (3.0038+nmu1) ... Removing sensible-utils (0.0.12) ... Removing ca-certificates-java (20190405) ... Removing ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-message-perl (6.18-1) ... Removing libencode-locale-perl (1.05-1) ... Removing libhttp-date-perl (6.02-1) ... Removing libio-html-perl (1.001-1) ... Removing liblwp-mediatypes-perl (6.02-1) ... Removing libnss3:amd64 (2:3.42.1-1+deb10u6) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u2) ... Removing openssl (1.1.1n-0+deb10u5) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u5) ... Removing libtimedate-perl (2.3000-2+deb10u1) ... Removing liburi-perl (1.76-1) ... Removing perl (5.28.1-6+deb10u1) ... Removing libperl5.28:amd64 (5.28.1-6+deb10u1) ... Removing libgdbm-compat4:amd64 (1.18.1-4) ... Removing libgdbm6:amd64 (1.18.1-4) ... Removing perl-modules-5.28 (5.28.1-6+deb10u1) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 2m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'remove', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libalgorithm-diff-perl', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcdt5', 'libcgraph6', 'libclass-data-inheritable-perl', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdevel-stacktrace-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfann2:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpvm3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsquid1', 'libssl1.1:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-perl', 'lsb-base', 'make', 'metastudent', 'metastudent-data', 'mime-support', 'ncbi-blast+-', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'reprof', 'sensible-utils', 'ucf', 'x11-common', 'predictprotein'] 2m9.0s INFO: Running scripts post_remove 2m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_remove_exceptions'] 2m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_remove_exceptions'] 2m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--purge', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libalgorithm-diff-perl', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcdt5', 'libcgraph6', 'libclass-data-inheritable-perl', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdevel-stacktrace-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfann2:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpvm3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsquid1', 'libssl1.1:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-perl', 'lsb-base', 'make', 'metastudent', 'metastudent-data', 'mime-support', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'reprof', 'sensible-utils', 'ucf', 'x11-common'] 2m10.1s DUMP: dpkg: warning: ignoring request to remove bioperl which isn't installed dpkg: warning: ignoring request to remove blast2 which isn't installed (Reading database ... 6568 files and directories currently installed.) Purging configuration files for ca-certificates (20200601~deb10u2) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20190405) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove disulfinder which isn't installed dpkg: warning: ignoring request to remove disulfinder-data which isn't installed Purging configuration files for fontconfig (2.13.1-2) ... Purging configuration files for fontconfig-config (2.13.1-2) ... Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed Purging configuration files for graphviz (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove hmmer2 which isn't installed Purging configuration files for java-common (0.71) ... dpkg: warning: ignoring request to remove libai-fann-perl which isn't installed dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libcdt5 which isn't installed dpkg: warning: ignoring request to remove libcgraph6 which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libconfig-inifiles-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexporter-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libfann2 which isn't installed dpkg: warning: ignoring request to remove libfile-chdir-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.58.3-2+deb10u4) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgo-perl which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgraphviz-perl which isn't installed dpkg: warning: ignoring request to remove libgsl23 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.17-3+deb10u5) ... dpkg: warning: ignoring request to remove libgts-0.7-5 which isn't installed Purging configuration files for libgvc6 (2.40.1-6+deb10u1) ... dpkg: warning: ignoring request to remove libgvpr2 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-pty-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libipc-run-perl which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblab-gamut1 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblist-moreutils-perl which isn't installed dpkg: warning: ignoring request to remove libllvm7 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed dpkg: warning: ignoring request to remove libpathplan4 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.28 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpvm3 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove librg-exception-perl which isn't installed dpkg: warning: ignoring request to remove librg-reprof-bundle-perl which isn't installed dpkg: warning: ignoring request to remove librg-utils-perl which isn't installed Purging configuration files for libsensors-config (1:3.5.0-3) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libsquid1 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u5) ... dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxdot4 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libxml-twig-perl which isn't installed dpkg: warning: ignoring request to remove libxml-xpath-perl which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyaml-perl which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove make which isn't installed Purging configuration files for metastudent (2.0.1-6) ... dpkg: warning: ignoring request to remove metastudent-data which isn't installed Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed dpkg: warning: ignoring request to remove ncbi-blast+-legacy which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-0+deb10u2) ... dpkg: warning: ignoring request to remove ncbi-seg which isn't installed dpkg: warning: ignoring request to remove ncoils which isn't installed Purging configuration files for netbase (5.6) ... dpkg: warning: ignoring request to remove norsnet which isn't installed dpkg: warning: ignoring request to remove norsp which isn't installed dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.18+10-1~deb10u1) ... Purging configuration files for openssl (1.1.1n-0+deb10u5) ... Purging configuration files for perl (5.28.1-6+deb10u1) ... dpkg: warning: ignoring request to remove perl-modules-5.28 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove predictnls which isn't installed dpkg: warning: ignoring request to remove profbval which isn't installed dpkg: warning: ignoring request to remove profisis which isn't installed dpkg: warning: ignoring request to remove profnet-bval which isn't installed dpkg: warning: ignoring request to remove profnet-isis which isn't installed dpkg: warning: ignoring request to remove profnet-norsnet which isn't installed dpkg: warning: ignoring request to remove profnet-prof which isn't installed dpkg: warning: ignoring request to remove profphd which isn't installed dpkg: warning: ignoring request to remove profphd-net which isn't installed dpkg: warning: ignoring request to remove profphd-utils which isn't installed dpkg: warning: ignoring request to remove proftmb which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u2) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove reprof which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0038+nmu1) ... Purging configuration files for x11-common (1:7.7+19) ... 2m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--purge', 'bioperl', 'blast2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'disulfinder', 'disulfinder-data', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'graphviz', 'hmmer', 'hmmer2', 'java-common', 'libai-fann-perl', 'libalgorithm-diff-perl', 'libasound2:amd64', 'libasound2-data', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbio-perl-perl', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapture-tiny-perl', 'libcdt5', 'libcgraph6', 'libclass-data-inheritable-perl', 'libconfig-inifiles-perl', 'libcups2:amd64', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdevel-stacktrace-perl', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1:amd64', 'libencode-locale-perl', 'libexception-class-perl', 'libexpat1:amd64', 'libexporter-tiny-perl', 'libfann2:amd64', 'libfile-chdir-perl', 'libfile-listing-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgo-perl', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgraphviz-perl', 'libgsl23:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgts-0.7-5:amd64', 'libgvc6', 'libgvpr2', 'libharfbuzz0b:amd64', 'libhtml-parser-perl', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libice6:amd64', 'libio-html-perl', 'libio-pty-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'libipc-run-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblab-gamut1', 'liblcms2-2:amd64', 'liblist-moreutils-perl', 'libllvm7:amd64', 'liblmdb0:amd64', 'libltdl7:amd64', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libmbedcrypto3:amd64', 'libmbedtls12:amd64', 'libmbedx509-0:amd64', 'libnet-http-perl', 'libnet-ssleay-perl', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparse-recdescent-perl', 'libpathplan4', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.28:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libpvm3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'librg-exception-perl', 'librg-reprof-bundle-perl', 'librg-utils-perl', 'libsensors-config', 'libsensors5:amd64', 'libsm6:amd64', 'libsqlite3-0:amd64', 'libsquid1', 'libssl1.1:amd64', 'libsub-uplevel-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwebp6:amd64', 'libwww-perl', 'libwww-robotrules-perl', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxaw7:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxdot4', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxml-parser-perl', 'libxml-twig-perl', 'libxml-xpath-perl', 'libxmu6:amd64', 'libxpm4:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxt6:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-perl', 'lsb-base', 'make', 'metastudent', 'metastudent-data', 'mime-support', 'ncbi-blast+', 'ncbi-blast+-legacy', 'ncbi-data', 'ncbi-seg', 'ncoils', 'netbase', 'norsnet', 'norsp', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openssl', 'perl', 'perl-modules-5.28', 'perl-openssl-defaults:amd64', 'predictnls', 'profbval', 'profisis', 'profnet-bval', 'profnet-isis', 'profnet-norsnet', 'profnet-prof', 'profphd', 'profphd-net', 'profphd-utils', 'proftmb', 'python', 'python-minimal', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'reprof', 'sensible-utils', 'ucf', 'x11-common'] 2m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--purge', 'predictprotein'] 2m10.1s DUMP: dpkg: warning: ignoring request to remove predictprotein which isn't installed 2m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--purge', 'predictprotein'] 2m10.1s INFO: Running scripts post_purge 2m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_purge_exceptions'] 2m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_purge_exceptions'] 2m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--purge', '--pending'] 2m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--purge', '--pending'] 2m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--remove', '--pending'] 2m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg', '--remove', '--pending'] 2m10.1s INFO: Running scripts post_test 2m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_test_exceptions'] 2m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'tmp/scripts/post_test_exceptions'] 2m10.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 2m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 2m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg-divert', '--list'] 2m10.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 2m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'dpkg-divert', '--list'] 2m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'clean'] 2m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds', 'apt-get', 'clean'] 2m10.6s DEBUG: Recording chroot state 2m11.2s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/shm'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/shm'] 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/console'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/console'] 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/ptmx'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/ptmx'] 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/pts'] 2m11.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/dev/pts'] 2m11.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/proc'] 2m11.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds/proc'] 2m11.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 2m11.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpplv9_7ds'] 2m11.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpplv9_7ds 2m11.8s INFO: PASS: Upgrading between Debian distributions. 2m11.8s INFO: PASS: All tests. 2m11.8s INFO: piuparts run ends. ret=0 End: 2023-07-15 05:06:55 GMT