Start: 2023-08-29 10:37:36 GMT [buster] Package: python-biom-format Version: 2.1.7+dfsg-2 Installed-Size: 683 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, pyqi, python (<< 2.8), python (>= 2.7~), python-click, python-future, python-pandas, python-scipy, python-six (>= 1.10.0), python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.4) Suggests: python-biom-format-doc Description: Biological Observation Matrix (BIOM) format (Python 2) Homepage: http://biom-format.org/ Description-md5: 4fa3a129f6ba9d584f7760eaa284dfd8 Section: python Priority: optional Filename: pool/main/p/python-biom-format/python-biom-format_2.1.7+dfsg-2_amd64.deb Size: 143300 MD5sum: 034b79dc225382c5a96794d4c72710c6 SHA256: a6738f179b94bc7ad7ab18e526d41197e04abcb510ab9e7ca9469ad6f87bd622 [buster-next] Package: python-biom-format Version: 2.1.7+dfsg-2 Installed-Size: 683 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, pyqi, python (<< 2.8), python (>= 2.7~), python-click, python-future, python-pandas, python-scipy, python-six (>= 1.10.0), python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.4) Suggests: python-biom-format-doc Description: Biological Observation Matrix (BIOM) format (Python 2) Homepage: http://biom-format.org/ Description-md5: 4fa3a129f6ba9d584f7760eaa284dfd8 Section: python Priority: optional Filename: pool/main/p/python-biom-format/python-biom-format_2.1.7+dfsg-2_amd64.deb Size: 143300 MD5sum: 034b79dc225382c5a96794d4c72710c6 SHA256: a6738f179b94bc7ad7ab18e526d41197e04abcb510ab9e7ca9469ad6f87bd622 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt python-biom-format=2.1.7+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt python-biom-format=2.1.7+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-25-amd64 #1 SMP Debian 5.10.191-1 (2023-08-16) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6s3w6kxy 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6s3w6kxy 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/shm'] 0m1.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6s3w6kxy/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'update'] 0m3.1s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-yf', 'dist-upgrade'] 0m3.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-yf', 'dist-upgrade'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s INFO: Running scripts post_setup 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_dummy_users'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_forbid_home'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_minimize'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_setup_zz_backports'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat 0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m5.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m5.8s INFO: Running scripts is_testable 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/is_testable_uninstallable'] 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_test_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'show', '--no-all-versions', 'python-biom-format'] 0m6.0s DUMP: Package: python-biom-format Version: 2.1.7+dfsg-2 Installed-Size: 683 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, pyqi, python (<< 2.8), python (>= 2.7~), python-click, python-future, python-pandas, python-scipy, python-six (>= 1.10.0), python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.4) Suggests: python-biom-format-doc Description-en: Biological Observation Matrix (BIOM) format (Python 2) The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the BIOM format library for the Python 2 interpreter. Description-md5: 4fa3a129f6ba9d584f7760eaa284dfd8 Homepage: http://biom-format.org/ Section: python Priority: optional Filename: pool/main/p/python-biom-format/python-biom-format_2.1.7+dfsg-2_amd64.deb Size: 143300 MD5sum: 034b79dc225382c5a96794d4c72710c6 SHA256: a6738f179b94bc7ad7ab18e526d41197e04abcb510ab9e7ca9469ad6f87bd622 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'show', '--no-all-versions', 'python-biom-format'] 0m6.0s INFO: apt-cache knows about the following packages: python-biom-format 0m6.0s INFO: Running scripts pre_install 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_database-server'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_exceptions'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_extras'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy'] 0m6.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy', 'python-biom-format'] 0m6.1s DUMP: python-biom-format: Installed: (none) Candidate: 2.1.7+dfsg-2 Version table: 2.1.7+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy', 'python-biom-format'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-y', 'install', 'python-biom-format'] 0m20.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libblas3 libexpat1 libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 mime-support pyqi python python-click python-colorama python-configparser python-dateutil python-decorator python-future python-minimal python-numpy python-pandas python-pandas-lib python-pkg-resources python-scipy python-six python-tz python2 python2-minimal python2.7 python2.7-minimal readline-common sphinx-common Suggested packages: python-doc python-tk python-biom-format-doc python-future-doc gcc gfortran python-dev python-pytest python-numpy-dbg python-numpy-doc python-pandas-doc python-setuptools python-scipy-doc python2-doc python2.7-doc binutils binfmt-support readline-doc Recommended packages: javascript-common bzip2 file xz-utils python-matplotlib python-tables python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt python-bs4 python-html5lib python-lxml g++ | c++-compiler python-dev python-pil python-sphinx | python3-sphinx The following NEW packages will be installed: libblas3 libexpat1 libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 mime-support pyqi python python-biom-format python-click python-colorama python-configparser python-dateutil python-decorator python-future python-minimal python-numpy python-pandas python-pandas-lib python-pkg-resources python-scipy python-six python-tz python2 python2-minimal python2.7 python2.7-minimal readline-common sphinx-common 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 29.1 MB of archives. After this operation, 129 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get:2 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get:3 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get:4 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get:5 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u3 [1551 kB] Get:6 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get:7 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u4 [108 kB] Get:8 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get:9 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:10 http://deb.debian.org/debian buster/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u1 [641 kB] Get:11 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get:12 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get:14 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get:15 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get:16 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get:23 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:24 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get:25 http://deb.debian.org/debian buster/main amd64 pyqi all 0.3.2+dfsg-3 [69.8 kB] Get:26 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get:27 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get:28 http://deb.debian.org/debian buster/main amd64 python-colorama all 0.3.7-1 [25.7 kB] Get:29 http://deb.debian.org/debian buster/main amd64 python-click all 7.0-1 [73.5 kB] Get:30 http://deb.debian.org/debian buster/main amd64 python-configparser all 3.5.0b2-1 [59.2 kB] Get:31 http://deb.debian.org/debian buster/main amd64 python-future all 0.16.0-1 [348 kB] Get:32 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get:33 http://deb.debian.org/debian buster/main amd64 python-dateutil all 2.7.3-3 [76.8 kB] Get:34 http://deb.debian.org/debian buster/main amd64 python-tz all 2019.1-1 [33.6 kB] Get:35 http://deb.debian.org/debian buster/main amd64 python-pandas-lib amd64 0.23.3+dfsg-3 [3430 kB] Get:36 http://deb.debian.org/debian buster/main amd64 python-pandas all 0.23.3+dfsg-3 [1750 kB] Get:37 http://deb.debian.org/debian buster/main amd64 python-decorator all 4.3.0-1.1 [14.4 kB] Get:38 http://deb.debian.org/debian buster/main amd64 python-scipy amd64 1.1.0-7 [10.1 MB] Get:39 http://deb.debian.org/debian buster/main amd64 python-biom-format amd64 2.1.7+dfsg-2 [143 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.1 MB in 1s (57.0 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6462 files and directories currently installed.) Preparing to unpack .../00-libpython2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../01-python2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. 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Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7299 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... 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Setting up libreadline7:amd64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python2 (2.7.16-1) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up python (2.7.16-1) ... Setting up pyqi (0.3.2+dfsg-3) ... Setting up python-colorama (0.3.7-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up python-six (1.12.0-1) ... Setting up python-dateutil (2.7.3-3) ... Setting up python-configparser (3.5.0b2-1) ... Setting up python-click (7.0-1) ... Setting up python-tz (2019.1-1) ... Setting up python-future (0.16.0-1) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python-numpy (1:1.16.2-1) ... Setting up python-scipy (1.1.0-7) ... Setting up python-pandas-lib (0.23.3+dfsg-3) ... Setting up python-pandas (0.23.3+dfsg-3) ... Setting up python-biom-format (2.1.7+dfsg-2) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-y', 'install', 'python-biom-format'] 0m20.3s INFO: Running scripts post_install 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_install_exceptions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_install_exceptions'] 0m20.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m20.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m20.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6s3w6kxy to buster-next 0m20.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main deb http://security.debian.org buster/updates main deb http://deb.debian.org/debian/ buster-updates main deb http://deb.debian.org/debian/ buster-proposed-updates main 0m20.9s INFO: Running scripts pre_distupgrade 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_exceptions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'update'] 0m22.9s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Get:2 http://deb.debian.org/debian buster-updates InRelease [56.6 kB] Get:3 http://security.debian.org buster/updates InRelease [34.8 kB] Get:4 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB] Get:5 http://security.debian.org buster/updates/main amd64 Packages [548 kB] Get:6 http://security.debian.org buster/updates/main Translation-en [292 kB] Get:7 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B] Get:8 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B] Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B] Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B] Fetched 1009 kB in 1s (1108 kB/s) Reading package lists... 0m22.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'update'] 0m22.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-yf', 'dist-upgrade'] 0m29.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debian-archive-keyring libbz2-1.0 libc-bin libc6 libexpat1 libgnutls30 libncursesw6 libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.1 libsystemd0 libtasn1-6 libtinfo6 libudev1 ncurses-base ncurses-bin python2.7 python2.7-minimal tzdata zlib1g 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 13.2 MB of archives. After this operation, 53.2 kB of additional disk space will be used. Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB] Get:2 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB] Get:3 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB] Get:4 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB] Get:5 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB] Get:6 http://security.debian.org buster/updates/main amd64 python2.7 amd64 2.7.16-2+deb10u2 [306 kB] Get:7 http://security.debian.org buster/updates/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u6 [1552 kB] Get:8 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB] Get:9 http://security.debian.org buster/updates/main amd64 libexpat1 amd64 2.2.6-2+deb10u6 [108 kB] Get:10 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB] Get:11 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB] Get:12 http://security.debian.org buster/updates/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u2 [641 kB] Get:13 http://security.debian.org buster/updates/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u2 [1911 kB] Get:14 http://security.debian.org buster/updates/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u2 [1367 kB] Get:15 http://security.debian.org buster/updates/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u2 [396 kB] Get:16 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB] Get:17 http://security.debian.org buster/updates/main amd64 debian-archive-keyring all 2019.1+deb10u2 [110 kB] Get:18 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB] Get:19 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB] Get:20 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB] Get:21 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.2 MB in 0s (56.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking ncurses-bin (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-bin (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../libc6_2.28-10+deb10u2_amd64.deb ... Unpacking libc6:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc6:amd64 (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../libc-bin_2.28-10+deb10u2_amd64.deb ... Unpacking libc-bin (2.28-10+deb10u2) over (2.28-10+deb10u1) ... Setting up libc-bin (2.28-10+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u3_all.deb ... Unpacking ncurses-base (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up ncurses-base (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../libsystemd0_241-7~deb10u10_amd64.deb ... Unpacking libsystemd0:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libsystemd0:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../python2.7_2.7.16-2+deb10u2_amd64.deb ... Unpacking python2.7 (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../libssl1.1_1.1.1n-0+deb10u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1n-0+deb10u6) over (1.1.1n-0+deb10u3) ... Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u2_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ... Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../libexpat1_2.2.6-2+deb10u6_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u6) over (2.2.6-2+deb10u4) ... Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u3_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ... Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.27.2-3+deb10u2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.27.2-3+deb10u2) over (3.27.2-3+deb10u1) ... Preparing to unpack .../libpython2.7-stdlib_2.7.16-2+deb10u2_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../python2.7-minimal_2.7.16-2+deb10u2_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../libpython2.7-minimal_2.7.16-2+deb10u2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) over (2.7.16-2+deb10u1) ... Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10603 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u2_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u2) over (2019.1+deb10u1) ... Setting up debian-archive-keyring (2019.1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10609 files and directories currently installed.) Preparing to unpack .../libudev1_241-7~deb10u10_amd64.deb ... Unpacking libudev1:amd64 (241-7~deb10u10) over (241-7~deb10u8) ... Setting up libudev1:amd64 (241-7~deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10609 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3+deb10u1_amd64.deb ... Unpacking libtasn1-6:amd64 (4.13-3+deb10u1) over (4.13-3) ... Setting up libtasn1-6:amd64 (4.13-3+deb10u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10609 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u10_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u10) over (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10609 files and directories currently installed.) Preparing to unpack .../tzdata_2021a-0+deb10u11_all.deb ... Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u6) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u6) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u2) ... Setting up tzdata (2021a-0+deb10u11) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 29 10:38:04 UTC 2023. Universal Time is now: Tue Aug 29 10:38:04 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) ... Setting up python2.7-minimal (2.7.16-2+deb10u2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u2) ... Setting up python2.7 (2.7.16-2+deb10u2) ... Processing triggers for mime-support (3.62) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-yf', 'dist-upgrade'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m29.5s DUMP: 248b2485c816c3180e4309fc1546b530 - 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'show', '--no-all-versions', 'python-biom-format'] 0m29.8s DUMP: Package: python-biom-format Version: 2.1.7+dfsg-2 Installed-Size: 683 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, pyqi, python (<< 2.8), python (>= 2.7~), python-click, python-future, python-pandas, python-scipy, python-six (>= 1.10.0), python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.4) Suggests: python-biom-format-doc Description-en: Biological Observation Matrix (BIOM) format (Python 2) The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the BIOM format library for the Python 2 interpreter. Description-md5: 4fa3a129f6ba9d584f7760eaa284dfd8 Homepage: http://biom-format.org/ Section: python Priority: optional Filename: pool/main/p/python-biom-format/python-biom-format_2.1.7+dfsg-2_amd64.deb Size: 143300 MD5sum: 034b79dc225382c5a96794d4c72710c6 SHA256: a6738f179b94bc7ad7ab18e526d41197e04abcb510ab9e7ca9469ad6f87bd622 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'show', '--no-all-versions', 'python-biom-format'] 0m29.8s INFO: apt-cache knows about the following packages: python-biom-format 0m29.8s INFO: Running scripts pre_install 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_database-server'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_database-server'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_exceptions'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_exceptions'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_extras'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_extras'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy'] 0m29.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m29.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy'] 0m29.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy', 'python-biom-format'] 0m30.0s DUMP: python-biom-format: Installed: 2.1.7+dfsg-2 Candidate: 2.1.7+dfsg-2 Version table: *** 2.1.7+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m30.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy', 'python-biom-format'] 0m30.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-y', 'install', 'python-biom-format'] 0m30.4s DUMP: Reading package lists... Building dependency tree... Reading state information... python-biom-format is already the newest version (2.1.7+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-y', 'install', 'python-biom-format'] 0m30.4s INFO: Running scripts post_install 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_install_exceptions'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_install_exceptions'] 0m30.4s INFO: Running scripts post_distupgrade 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m31.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m31.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m31.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m31.5s INFO: Running scripts pre_install 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_database-server'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_database-server'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_exceptions'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_exceptions'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_extras'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_extras'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy'] 0m31.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy'] 0m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy', 'python-biom-format'] 0m31.7s DUMP: python-biom-format: Installed: 2.1.7+dfsg-2 Candidate: 2.1.7+dfsg-2 Version table: *** 2.1.7+dfsg-2 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m31.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-cache', 'policy', 'python-biom-format'] 0m31.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-y', 'install', 'python-biom-format=2.1.7+dfsg-2'] 0m32.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python-biom-format is already the newest version (2.1.7+dfsg-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', '-y', 'install', 'python-biom-format=2.1.7+dfsg-2'] 0m32.1s INFO: Running scripts post_install 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_install_exceptions'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_install_exceptions'] 0m32.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m32.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m33.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', '-ac', '--ignore-obsolete'] 0m34.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', '-ac', '--ignore-obsolete'] 0m34.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.9s DUMP: 0.15.6 0m34.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m34.9s INFO: Running adequate version 0.15.6 now. 0m34.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'python-biom-format'] 0m35.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'python-biom-format'] 0m35.0s INFO: Running scripts pre_remove 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m35.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_exceptions'] 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/pre_remove_exceptions'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u2 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2 install ok installed libc-bin libc-bin 2.28-10+deb10u2 install ok installed libc6:amd64 libc6 2.28-10+deb10u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u6 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 1.8.4-1 install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpython-stdlib:amd64 libpython-stdlib 2.7.16-1 install ok installed libpython2-stdlib:amd64 libpython2-stdlib 2.7.16-1 install ok installed libpython2.7-minimal:amd64 libpython2.7-minimal 2.7.16-2+deb10u2 install ok installed libpython2.7-stdlib:amd64 libpython2.7-stdlib 2.7.16-2+deb10u2 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u2 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u6 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3 install ok installed libudev1:amd64 libudev1 241-7~deb10u10 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed pyqi pyqi 0.3.2+dfsg-3 install ok installed python python 2.7.16-1 install ok installed python-biom-format python-biom-format 2.1.7+dfsg-2 install ok installed python-click python-click 7.0-1 install ok installed python-colorama python-colorama 0.3.7-1 install ok installed python-configparser python-configparser 3.5.0b2-1 install ok installed python-dateutil python-dateutil 2.7.3-3 install ok installed python-decorator python-decorator 4.3.0-1.1 install ok installed python-future python-future 0.16.0-1 install ok installed python-minimal python-minimal 2.7.16-1 install ok installed python-numpy python-numpy 1:1.16.2-1 install ok installed python-pandas python-pandas 0.23.3+dfsg-3 install ok installed python-pandas-lib python-pandas-lib 0.23.3+dfsg-3 install ok installed python-pkg-resources python-pkg-resources 40.8.0-1 install ok installed python-scipy python-scipy 1.1.0-7 install ok installed python-six python-six 1.12.0-1 install ok installed python-tz python-tz 2019.1-1 install ok installed python2 python2 2.7.16-1 install ok installed python2-minimal python2-minimal 2.7.16-1 install ok installed python2.7 python2.7 2.7.16-2+deb10u2 install ok installed python2.7-minimal python2.7-minimal 2.7.16-2+deb10u2 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sphinx-common sphinx-common 1.8.4-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u11 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2 0m36.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m36.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'remove', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'pyqi', 'python', 'python-click', 'python-colorama', 'python-configparser', 'python-dateutil', 'python-decorator', 'python-future', 'python-minimal', 'python-numpy', 'python-pandas', 'python-pandas-lib', 'python-pkg-resources', 'python-scipy', 'python-six', 'python-tz', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'sphinx-common', 'python-biom-format'] 0m39.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3 libexpat1 libgfortran5 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 mime-support pyqi python python-biom-format python-click python-colorama python-configparser python-dateutil python-decorator python-future python-minimal python-numpy python-pandas python-pandas-lib python-pkg-resources python-scipy python-six python-tz python2 python2-minimal python2.7 python2.7-minimal readline-common sphinx-common 0 upgraded, 0 newly installed, 39 to remove and 0 not upgraded. After this operation, 129 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10612 files and directories currently installed.) Removing python-biom-format (2.1.7+dfsg-2) ... Removing python-scipy (1.1.0-7) ... Removing python-pandas (0.23.3+dfsg-3) ... Removing python-pandas-lib (0.23.3+dfsg-3) ... Removing python-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing pyqi (0.3.2+dfsg-3) ... Removing python-dateutil (2.7.3-3) ... Removing python-six (1.12.0-1) ... Removing python-future (0.16.0-1) ... Removing python-configparser (3.5.0b2-1) ... Removing python-tz (2019.1-1) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing sphinx-common (1.8.4-1) ... Removing libjs-sphinxdoc (1.8.4-1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing python-click (7.0-1) ... Removing python-colorama (0.3.7-1) ... Removing python-decorator (4.3.0-1.1) ... Removing python-pkg-resources (40.8.0-1) ... Removing python (2.7.16-1) ... Removing python2 (2.7.16-1) ... Removing python2.7 (2.7.16-2+deb10u2) ... Removing libpython-stdlib:amd64 (2.7.16-1) ... Removing libpython2-stdlib:amd64 (2.7.16-1) ... Removing python-minimal (2.7.16-1) ... Removing python2-minimal (2.7.16-1) ... Removing python2.7-minimal (2.7.16-2+deb10u2) ... Removing libpython2.7-stdlib:amd64 (2.7.16-2+deb10u2) ... Removing libexpat1:amd64 (2.2.6-2+deb10u6) ... Removing libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) ... find: '/usr/lib/python2.7': No such file or directory Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u2) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u6) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'remove', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'pyqi', 'python', 'python-click', 'python-colorama', 'python-configparser', 'python-dateutil', 'python-decorator', 'python-future', 'python-minimal', 'python-numpy', 'python-pandas', 'python-pandas-lib', 'python-pkg-resources', 'python-scipy', 'python-six', 'python-tz', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'sphinx-common', 'python-biom-format'] 0m39.1s INFO: Running scripts post_remove 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_remove_exceptions'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_remove_exceptions'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--purge', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'pyqi', 'python', 'python-click', 'python-colorama', 'python-configparser', 'python-dateutil', 'python-decorator', 'python-future', 'python-minimal', 'python-numpy', 'python-pandas', 'python-pandas-lib', 'python-pkg-resources', 'python-scipy', 'python-six', 'python-tz', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'sphinx-common'] 0m39.3s DUMP: dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libpython-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython2-stdlib which isn't installed (Reading database ... 6475 files and directories currently installed.) Purging configuration files for libpython2.7-minimal:amd64 (2.7.16-2+deb10u2) ... dpkg: warning: ignoring request to remove libpython2.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u6) ... Purging configuration files for mime-support (3.62) ... dpkg: warning: ignoring request to remove pyqi which isn't installed Purging configuration files for python (2.7.16-1) ... dpkg: warning: ignoring request to remove python-click which isn't installed dpkg: warning: ignoring request to remove python-colorama which isn't installed dpkg: warning: ignoring request to remove python-configparser which isn't installed dpkg: warning: ignoring request to remove python-dateutil which isn't installed dpkg: warning: ignoring request to remove python-decorator which isn't installed dpkg: warning: ignoring request to remove python-future which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove python-numpy which isn't installed dpkg: warning: ignoring request to remove python-pandas which isn't installed dpkg: warning: ignoring request to remove python-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python-scipy which isn't installed dpkg: warning: ignoring request to remove python-six which isn't installed dpkg: warning: ignoring request to remove python-tz which isn't installed dpkg: warning: ignoring request to remove python2 which isn't installed dpkg: warning: ignoring request to remove python2-minimal which isn't installed dpkg: warning: ignoring request to remove python2.7 which isn't installed Purging configuration files for python2.7-minimal (2.7.16-2+deb10u2) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove sphinx-common which isn't installed 0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--purge', 'libblas3:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'liblapack3:amd64', 'libpython-stdlib:amd64', 'libpython2-stdlib:amd64', 'libpython2.7-minimal:amd64', 'libpython2.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'mime-support', 'pyqi', 'python', 'python-click', 'python-colorama', 'python-configparser', 'python-dateutil', 'python-decorator', 'python-future', 'python-minimal', 'python-numpy', 'python-pandas', 'python-pandas-lib', 'python-pkg-resources', 'python-scipy', 'python-six', 'python-tz', 'python2', 'python2-minimal', 'python2.7', 'python2.7-minimal', 'readline-common', 'sphinx-common'] 0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--purge', 'python-biom-format'] 0m39.3s DUMP: dpkg: warning: ignoring request to remove python-biom-format which isn't installed 0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--purge', 'python-biom-format'] 0m39.3s INFO: Running scripts post_purge 0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_purge_exceptions'] 0m39.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_purge_exceptions'] 0m39.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--purge', '--pending'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--purge', '--pending'] 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--remove', '--pending'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg', '--remove', '--pending'] 0m39.4s INFO: Running scripts post_test 0m39.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_test_exceptions'] 0m39.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'tmp/scripts/post_test_exceptions'] 0m39.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m39.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg-divert', '--list'] 0m39.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'dpkg-divert', '--list'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'clean'] 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy', 'apt-get', 'clean'] 0m39.7s DEBUG: Recording chroot state 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/shm'] 0m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/shm'] 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/console'] 0m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/console'] 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/ptmx'] 0m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/ptmx'] 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/pts'] 0m40.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/dev/pts'] 0m40.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/proc'] 0m40.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy/proc'] 0m40.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m40.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6s3w6kxy'] 0m40.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6s3w6kxy 0m40.9s INFO: PASS: Upgrading between Debian distributions. 0m40.9s INFO: PASS: All tests. 0m40.9s INFO: piuparts run ends. ret=0 End: 2023-08-29 10:38:17 GMT