Start: 2023-07-28 20:11:11 GMT
[buster]
Package: python-pbcore-doc
Source: python-pbcore
Version: 1.6.5+dfsg-1
Installed-Size: 281
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: libjs-jquery, libjs-underscore
Description: Python library for processing PacBio data files (documentation)
Homepage: https://github.com/PacificBiosciences/pbcore
Description-md5: cf3f1c27d8e14eb91bf538737c443bb9
Section: doc
Priority: optional
Filename: pool/main/p/python-pbcore/python-pbcore-doc_1.6.5+dfsg-1_all.deb
Size: 48460
MD5sum: 9cba594650dde6a8cd95da69079e5328
SHA256: 75651c4201b2eb65b90fe87f8955b804dfe6747cf5ce70e77a4d4bcaeb38cf7a
[buster-next]
Package: python-pbcore-doc
Source: python-pbcore
Version: 1.6.5+dfsg-1
Installed-Size: 281
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: libjs-jquery, libjs-underscore
Description: Python library for processing PacBio data files (documentation)
Homepage: https://github.com/PacificBiosciences/pbcore
Description-md5: cf3f1c27d8e14eb91bf538737c443bb9
Section: doc
Priority: optional
Filename: pool/main/p/python-pbcore/python-pbcore-doc_1.6.5+dfsg-1_all.deb
Size: 48460
MD5sum: 9cba594650dde6a8cd95da69079e5328
SHA256: 75651c4201b2eb65b90fe87f8955b804dfe6747cf5ce70e77a4d4bcaeb38cf7a
Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt python-pbcore-doc=1.6.5+dfsg-1
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt python-pbcore-doc=1.6.5+dfsg-1
0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-2 (2023-07-14) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_3kku3vm
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_3kku3vm
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz']
0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz']
0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/proc']
0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/proc']
0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/pts']
0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/pts']
0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/ptmx']
0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/ptmx']
0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/console']
0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/console']
0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/shm']
0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/shm']
0m2.1s DEBUG: sources.list:
deb http://deb.debian.org/debian/ buster main
0m2.1s DEBUG: Created policy-rc.d and chmodded it.
0m2.1s DEBUG: Created resolv.conf.
0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_3kku3vm/tmp/scripts/
0m2.1s INFO: Running scripts post_chroot_unpack
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'update']
0m3.2s DUMP:
Hit:1 http://deb.debian.org/debian buster InRelease
Reading package lists...
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'update']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-yf', 'dist-upgrade']
0m3.7s DUMP:
Reading package lists...
Building dependency tree...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-yf', 'dist-upgrade']
0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m4.0s DUMP:
f6fc0f2636004ef589309651dfd778f4 -
0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m4.0s INFO: Running scripts post_setup
0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_dummy_users']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_dummy_users']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_forbid_home']
0m5.3s DUMP:
Disabling /home
Adding 'local diversion of /home to /home.distrib'
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_forbid_home']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_force-unsafe-io']
0m5.3s DUMP:
Enabling dpkg --force-unsafe-io.
Adding 'local diversion of /bin/sync to /bin/sync.distrib'
dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename
'/bin/sync' -> 'true'
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_force-unsafe-io']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_minimize']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_minimize']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_squeeze-backports']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_squeeze-backports']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_zz_backports']
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_setup_zz_backports']
0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m5.3s DUMP:
install ok installed adduser adduser 3.118
install ok installed apt apt 1.8.2.3
install ok installed base-files base-files 10.3+deb10u13
install ok installed base-passwd base-passwd 3.5.46
install ok installed bash bash 5.0-4
install ok installed bsdutils bsdutils 1:2.33.1-0.1
install ok installed coreutils coreutils 8.30-3
install ok installed dash dash 0.5.10.2-5
install ok installed debconf debconf 1.5.71+deb10u1
install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1
install ok installed debianutils debianutils 4.8.6.1
install ok installed diffutils diffutils 1:3.7-3
install ok installed dpkg dpkg 1.19.8
install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3
install ok installed fdisk fdisk 2.33.1-0.1
install ok installed findutils findutils 4.6.0+git+20190209-2
install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6
install ok installed gpgv gpgv 2.2.12-1+deb10u2
install ok installed grep grep 3.3-1
install ok installed gzip gzip 1.9-3+deb10u1
install ok installed hostname hostname 3.21
install ok installed init-system-helpers init-system-helpers 1.56+nmu1
install ok installed libacl1:amd64 libacl1 2.2.53-4
install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3
install ok installed libattr1:amd64 libattr1 1:2.4.48-4
install ok installed libaudit-common libaudit-common 1:2.8.4-3
install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3
install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1
install ok installed libc-bin libc-bin 2.28-10+deb10u1
install ok installed libc6:amd64 libc6 2.28-10+deb10u1
install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2
install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3
install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249
install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3
install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1
install ok installed libffi6:amd64 libffi6 3.2.1-9
install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6
install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1
install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1
install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8
install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1
install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1
install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1
install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1
install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1
install ok installed libmount1:amd64 libmount1 2.33.1-0.1
install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2
install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1
install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1
install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5
install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5
install ok installed libpam-runtime libpam-runtime 1.3.1-5
install ok installed libpam0g:amd64 libpam0g 1.3.1-5
install ok installed libpcre3:amd64 libpcre3 2:8.39-12
install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4
install ok installed libselinux1:amd64 libselinux1 2.8-1+b1
install ok installed libsemanage-common libsemanage-common 2.8-2
install ok installed libsemanage1:amd64 libsemanage1 2.8-2
install ok installed libsepol1:amd64 libsepol1 2.8-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1
install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3
install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6
install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8
install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3
install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2
install ok installed libudev1:amd64 libudev1 241-7~deb10u8
install ok installed libunistring2:amd64 libunistring2 0.9.10-1
install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1
install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2
install ok installed login login 1:4.5-1.1
install ok installed mawk mawk 1.3.3-17+b3
install ok installed mount mount 2.33.1-0.1
install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2
install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2
install ok installed passwd passwd 1:4.5-1.1
install ok installed perl-base perl-base 5.28.1-6+deb10u1
install ok installed sed sed 4.7-1
install ok installed sysvinit-utils sysvinit-utils 2.93-8
install ok installed tar tar 1.30+dfsg-6
install ok installed tzdata tzdata 2021a-0+deb10u6
install ok installed util-linux util-linux 2.33.1-0.1
install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1
0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m5.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat
0m5.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m5.9s INFO: Running scripts is_testable
0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/is_testable_uninstallable']
0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/is_testable_uninstallable']
0m5.9s INFO: Running scripts pre_test
0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_test_exceptions']
0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_test_exceptions']
0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_test_root_password']
0m6.0s DUMP:
New password: Retype new password: passwd: password updated successfully
0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_test_root_password']
0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'show', '--no-all-versions', 'python-pbcore-doc']
0m6.5s DUMP:
Package: python-pbcore-doc
Source: python-pbcore
Version: 1.6.5+dfsg-1
Installed-Size: 281
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: libjs-jquery, libjs-underscore
Description-en: Python library for processing PacBio data files (documentation)
The pbcore package provides Python modules for processing Pacific Biosciences
data files and building PacBio bioinformatics applications. These modules
include tools to read/write PacBio data formats, sample data files for
testing and debugging, base classes, and utilities for building bioinformatics
applications.
.
pbcore is part of the SMRTAnalysis suite. This package provides the common
documentation package.
Description-md5: cf3f1c27d8e14eb91bf538737c443bb9
Homepage: https://github.com/PacificBiosciences/pbcore
Section: doc
Priority: optional
Filename: pool/main/p/python-pbcore/python-pbcore-doc_1.6.5+dfsg-1_all.deb
Size: 48460
MD5sum: 9cba594650dde6a8cd95da69079e5328
SHA256: 75651c4201b2eb65b90fe87f8955b804dfe6747cf5ce70e77a4d4bcaeb38cf7a
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'show', '--no-all-versions', 'python-pbcore-doc']
0m6.5s INFO: apt-cache knows about the following packages: python-pbcore-doc
0m6.5s INFO: Running scripts pre_install
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_database-server']
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_database-server']
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_exceptions']
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_exceptions']
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_extras']
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_extras']
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture']
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture']
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy']
0m6.6s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian buster/main amd64 Packages
release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy']
0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy', 'python-pbcore-doc']
0m6.7s DUMP:
python-pbcore-doc:
Installed: (none)
Candidate: 1.6.5+dfsg-1
Version table:
1.6.5+dfsg-1 500
500 http://deb.debian.org/debian buster/main amd64 Packages
0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy', 'python-pbcore-doc']
0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-y', 'install', 'python-pbcore-doc']
0m7.9s DUMP:
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
libjs-jquery libjs-underscore
Recommended packages:
javascript-common
The following NEW packages will be installed:
libjs-jquery libjs-underscore python-pbcore-doc
0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded.
Need to get 480 kB of archives.
After this operation, 1338 kB of additional disk space will be used.
Get:1 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB]
Get:2 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB]
Get:3 http://deb.debian.org/debian buster/main amd64 python-pbcore-doc all 1.6.5+dfsg-1 [48.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 480 kB in 0s (2206 kB/s)
Selecting previously unselected package libjs-jquery.
(Reading database ...
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Preparing to unpack .../libjs-jquery_3.3.1~dfsg-3+deb10u1_all.deb ...
Unpacking libjs-jquery (3.3.1~dfsg-3+deb10u1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../libjs-underscore_1.9.1~dfsg-1+deb10u1_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-1+deb10u1) ...
Selecting previously unselected package python-pbcore-doc.
Preparing to unpack .../python-pbcore-doc_1.6.5+dfsg-1_all.deb ...
Unpacking python-pbcore-doc (1.6.5+dfsg-1) ...
Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ...
Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ...
Setting up python-pbcore-doc (1.6.5+dfsg-1) ...
0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-y', 'install', 'python-pbcore-doc']
0m7.9s INFO: Running scripts post_install
0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_install_exceptions']
0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_install_exceptions']
0m7.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m8.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp_3kku3vm to buster-next
0m8.2s DEBUG: sources.list:
deb http://deb.debian.org/debian/ buster main
deb http://security.debian.org buster/updates main
deb http://deb.debian.org/debian/ buster-updates main
deb http://deb.debian.org/debian/ buster-proposed-updates main
0m8.2s INFO: Running scripts pre_distupgrade
0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_exceptions']
0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_exceptions']
0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'update']
0m10.8s DUMP:
Get:1 http://security.debian.org buster/updates InRelease [34.8 kB]
Hit:2 http://deb.debian.org/debian buster InRelease
Get:3 http://deb.debian.org/debian buster-updates InRelease [56.6 kB]
Get:4 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB]
Get:5 http://security.debian.org buster/updates/main amd64 Packages [545 kB]
Get:6 http://security.debian.org buster/updates/main Translation-en [294 kB]
Get:7 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B]
Get:8 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B]
Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B]
Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B]
Fetched 1008 kB in 1s (817 kB/s)
Reading package lists...
0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'update']
0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-yf', 'dist-upgrade']
0m14.7s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
debian-archive-keyring libbz2-1.0 libc-bin libc6 libgnutls30 libncursesw6
libsystemd0 libtasn1-6 libtinfo6 libudev1 ncurses-base ncurses-bin tzdata
zlib1g
14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 6959 kB of archives.
After this operation, 56.3 kB of additional disk space will be used.
Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB]
Get:2 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB]
Get:3 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB]
Get:4 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB]
Get:5 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB]
Get:6 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB]
Get:7 http://security.debian.org buster/updates/main amd64 debian-archive-keyring all 2019.1+deb10u2 [110 kB]
Get:8 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB]
Get:9 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB]
Get:10 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB]
Get:11 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB]
Get:12 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB]
Get:13 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB]
Get:14 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 6959 kB in 0s (45.7 MB/s)
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Preparing to unpack .../ncurses-bin_6.1+20181013-2+deb10u3_amd64.deb ...
Unpacking ncurses-bin (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ...
Setting up ncurses-bin (6.1+20181013-2+deb10u3) ...
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Unpacking libc6:amd64 (2.28-10+deb10u2) over (2.28-10+deb10u1) ...
Setting up libc6:amd64 (2.28-10+deb10u2) ...
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Setting up libc-bin (2.28-10+deb10u2) ...
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Preparing to unpack .../ncurses-base_6.1+20181013-2+deb10u3_all.deb ...
Unpacking ncurses-base (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ...
Setting up ncurses-base (6.1+20181013-2+deb10u3) ...
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Preparing to unpack .../libsystemd0_241-7~deb10u10_amd64.deb ...
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Setting up libsystemd0:amd64 (241-7~deb10u10) ...
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Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1+deb10u2_amd64.deb ...
Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ...
Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) ...
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Setting up debian-archive-keyring (2019.1+deb10u2) ...
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Preparing to unpack .../libbz2-1.0_1.0.6-9.2~deb10u2_amd64.deb ...
Unpacking libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) over (1.0.6-9.2~deb10u1) ...
Setting up libbz2-1.0:amd64 (1.0.6-9.2~deb10u2) ...
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Preparing to unpack .../libudev1_241-7~deb10u10_amd64.deb ...
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Setting up libudev1:amd64 (241-7~deb10u10) ...
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Preparing to unpack .../libtasn1-6_4.13-3+deb10u1_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.13-3+deb10u1) over (4.13-3) ...
Setting up libtasn1-6:amd64 (4.13-3+deb10u1) ...
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Unpacking libgnutls30:amd64 (3.6.7-4+deb10u10) over (3.6.7-4+deb10u8) ...
Setting up libgnutls30:amd64 (3.6.7-4+deb10u10) ...
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Preparing to unpack .../libtinfo6_6.1+20181013-2+deb10u3_amd64.deb ...
Unpacking libtinfo6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ...
Setting up libtinfo6:amd64 (6.1+20181013-2+deb10u3) ...
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Preparing to unpack .../libncursesw6_6.1+20181013-2+deb10u3_amd64.deb ...
Unpacking libncursesw6:amd64 (6.1+20181013-2+deb10u3) over (6.1+20181013-2+deb10u2) ...
Setting up libncursesw6:amd64 (6.1+20181013-2+deb10u3) ...
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Preparing to unpack .../tzdata_2021a-0+deb10u11_all.deb ...
Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ...
Setting up tzdata (2021a-0+deb10u11) ...
Current default time zone: 'Etc/UTC'
Local time is now: Fri Jul 28 20:11:26 UTC 2023.
Universal Time is now: Fri Jul 28 20:11:26 UTC 2023.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Processing triggers for libc-bin (2.28-10+deb10u2) ...
0m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-yf', 'dist-upgrade']
0m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m15.1s DUMP:
c500145ccd8684759ae964bce027a1a4 -
0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'show', '--no-all-versions', 'python-pbcore-doc']
0m15.6s DUMP:
Package: python-pbcore-doc
Source: python-pbcore
Version: 1.6.5+dfsg-1
Installed-Size: 281
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Depends: libjs-jquery, libjs-underscore
Description-en: Python library for processing PacBio data files (documentation)
The pbcore package provides Python modules for processing Pacific Biosciences
data files and building PacBio bioinformatics applications. These modules
include tools to read/write PacBio data formats, sample data files for
testing and debugging, base classes, and utilities for building bioinformatics
applications.
.
pbcore is part of the SMRTAnalysis suite. This package provides the common
documentation package.
Description-md5: cf3f1c27d8e14eb91bf538737c443bb9
Homepage: https://github.com/PacificBiosciences/pbcore
Section: doc
Priority: optional
Filename: pool/main/p/python-pbcore/python-pbcore-doc_1.6.5+dfsg-1_all.deb
Size: 48460
MD5sum: 9cba594650dde6a8cd95da69079e5328
SHA256: 75651c4201b2eb65b90fe87f8955b804dfe6747cf5ce70e77a4d4bcaeb38cf7a
0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'show', '--no-all-versions', 'python-pbcore-doc']
0m15.6s INFO: apt-cache knows about the following packages: python-pbcore-doc
0m15.6s INFO: Running scripts pre_install
0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_database-server']
0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_database-server']
0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_exceptions']
0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_exceptions']
0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_extras']
0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_extras']
0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture']
0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture']
0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy']
0m15.8s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages
release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64
origin deb.debian.org
500 http://deb.debian.org/debian buster-updates/main amd64 Packages
release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64
origin deb.debian.org
500 http://security.debian.org buster/updates/main amd64 Packages
release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64
origin security.debian.org
500 http://deb.debian.org/debian buster/main amd64 Packages
release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy']
0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy', 'python-pbcore-doc']
0m15.8s DUMP:
python-pbcore-doc:
Installed: 1.6.5+dfsg-1
Candidate: 1.6.5+dfsg-1
Version table:
*** 1.6.5+dfsg-1 500
500 http://deb.debian.org/debian buster/main amd64 Packages
100 /var/lib/dpkg/status
0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy', 'python-pbcore-doc']
0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-y', 'install', 'python-pbcore-doc']
0m16.3s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python-pbcore-doc is already the newest version (1.6.5+dfsg-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-y', 'install', 'python-pbcore-doc']
0m16.3s INFO: Running scripts post_install
0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_install_exceptions']
0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_install_exceptions']
0m16.4s INFO: Running scripts post_distupgrade
0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_base_cleanup']
0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_exceptions']
0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_exceptions']
0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_zz_backports']
0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_distupgrade_zz_backports']
0m16.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m16.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m16.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m17.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m17.0s INFO: Running scripts pre_install
0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_database-server']
0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_database-server']
0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_exceptions']
0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_exceptions']
0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_extras']
0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_extras']
0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture']
0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture']
0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy']
0m17.1s DUMP:
Package files:
100 /var/lib/dpkg/status
release a=now
500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages
release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64
origin deb.debian.org
500 http://deb.debian.org/debian buster-updates/main amd64 Packages
release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64
origin deb.debian.org
500 http://security.debian.org buster/updates/main amd64 Packages
release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64
origin security.debian.org
500 http://deb.debian.org/debian buster/main amd64 Packages
release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64
origin deb.debian.org
Pinned packages:
0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy']
0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy', 'python-pbcore-doc']
0m17.2s DUMP:
python-pbcore-doc:
Installed: 1.6.5+dfsg-1
Candidate: 1.6.5+dfsg-1
Version table:
*** 1.6.5+dfsg-1 500
500 http://deb.debian.org/debian buster/main amd64 Packages
100 /var/lib/dpkg/status
0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-cache', 'policy', 'python-pbcore-doc']
0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-y', 'install', 'python-pbcore-doc=1.6.5+dfsg-1']
0m17.7s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
python-pbcore-doc is already the newest version (1.6.5+dfsg-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', '-y', 'install', 'python-pbcore-doc=1.6.5+dfsg-1']
0m17.7s INFO: Running scripts post_install
0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_install_exceptions']
0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_install_exceptions']
0m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m18.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m18.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', '-ac', '--ignore-obsolete']
0m19.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', '-ac', '--ignore-obsolete']
0m19.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m19.4s DUMP:
0.15.6
0m19.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m19.4s INFO: Running adequate version 0.15.6 now.
0m19.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'python-pbcore-doc']
0m19.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'python-pbcore-doc']
0m19.5s INFO: Running scripts pre_remove
0m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_exceptions']
0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/pre_remove_exceptions']
0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m20.8s DUMP:
install ok installed adduser adduser 3.118
install ok installed apt apt 1.8.2.3
install ok installed base-files base-files 10.3+deb10u13
install ok installed base-passwd base-passwd 3.5.46
install ok installed bash bash 5.0-4
install ok installed bsdutils bsdutils 1:2.33.1-0.1
install ok installed coreutils coreutils 8.30-3
install ok installed dash dash 0.5.10.2-5
install ok installed debconf debconf 1.5.71+deb10u1
install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u2
install ok installed debianutils debianutils 4.8.6.1
install ok installed diffutils diffutils 1:3.7-3
install ok installed dpkg dpkg 1.19.8
install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3
install ok installed fdisk fdisk 2.33.1-0.1
install ok installed findutils findutils 4.6.0+git+20190209-2
install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6
install ok installed gpgv gpgv 2.2.12-1+deb10u2
install ok installed grep grep 3.3-1
install ok installed gzip gzip 1.9-3+deb10u1
install ok installed hostname hostname 3.21
install ok installed init-system-helpers init-system-helpers 1.56+nmu1
install ok installed libacl1:amd64 libacl1 2.2.53-4
install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3
install ok installed libattr1:amd64 libattr1 1:2.4.48-4
install ok installed libaudit-common libaudit-common 1:2.8.4-3
install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3
install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1
install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2
install ok installed libc-bin libc-bin 2.28-10+deb10u2
install ok installed libc6:amd64 libc6 2.28-10+deb10u2
install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2
install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3
install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5
install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249
install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3
install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1
install ok installed libffi6:amd64 libffi6 3.2.1-9
install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6
install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1
install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1
install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10
install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1
install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1
install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1
install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1
install ok installed libjs-underscore libjs-underscore 1.9.1~dfsg-1+deb10u1
install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1
install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1
install ok installed libmount1:amd64 libmount1 2.33.1-0.1
install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3
install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1
install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1
install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5
install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5
install ok installed libpam-runtime libpam-runtime 1.3.1-5
install ok installed libpam0g:amd64 libpam0g 1.3.1-5
install ok installed libpcre3:amd64 libpcre3 2:8.39-12
install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4
install ok installed libselinux1:amd64 libselinux1 2.8-1+b1
install ok installed libsemanage-common libsemanage-common 2.8-2
install ok installed libsemanage1:amd64 libsemanage1 2.8-2
install ok installed libsepol1:amd64 libsepol1 2.8-1
install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1
install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3
install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6
install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10
install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1
install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3
install ok installed libudev1:amd64 libudev1 241-7~deb10u10
install ok installed libunistring2:amd64 libunistring2 0.9.10-1
install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1
install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2
install ok installed login login 1:4.5-1.1
install ok installed mawk mawk 1.3.3-17+b3
install ok installed mount mount 2.33.1-0.1
install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3
install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3
install ok installed passwd passwd 1:4.5-1.1
install ok installed perl-base perl-base 5.28.1-6+deb10u1
install ok installed python-pbcore-doc python-pbcore-doc 1.6.5+dfsg-1
install ok installed sed sed 4.7-1
install ok installed sysvinit-utils sysvinit-utils 2.93-8
install ok installed tar tar 1.30+dfsg-6
install ok installed tzdata tzdata 2021a-0+deb10u11
install ok installed util-linux util-linux 2.33.1-0.1
install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2
0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'remove', 'libjs-jquery', 'libjs-underscore', 'python-pbcore-doc']
0m21.7s DUMP:
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
libjs-jquery libjs-underscore python-pbcore-doc
0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
After this operation, 1338 kB disk space will be freed.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 6558 files and directories currently installed.)
Removing python-pbcore-doc (1.6.5+dfsg-1) ...
Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ...
Removing libjs-underscore (1.9.1~dfsg-1+deb10u1) ...
0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'remove', 'libjs-jquery', 'libjs-underscore', 'python-pbcore-doc']
0m21.7s INFO: Running scripts post_remove
0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_remove_exceptions']
0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_remove_exceptions']
0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--purge', 'libjs-jquery', 'libjs-underscore']
0m21.7s DUMP:
dpkg: warning: ignoring request to remove libjs-jquery which isn't installed
dpkg: warning: ignoring request to remove libjs-underscore which isn't installed
0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--purge', 'libjs-jquery', 'libjs-underscore']
0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--purge', 'python-pbcore-doc']
0m21.7s DUMP:
dpkg: warning: ignoring request to remove python-pbcore-doc which isn't installed
0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--purge', 'python-pbcore-doc']
0m21.7s INFO: Running scripts post_purge
0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_purge_exceptions']
0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_purge_exceptions']
0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--purge', '--pending']
0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--purge', '--pending']
0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--remove', '--pending']
0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg', '--remove', '--pending']
0m21.8s INFO: Running scripts post_test
0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_test_exceptions']
0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'tmp/scripts/post_test_exceptions']
0m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m22.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg-divert', '--list']
0m22.2s DUMP:
local diversion of /bin/sync to /bin/sync.distrib
diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash
local diversion of /home to /home.distrib
diversion of /bin/sh to /bin/sh.distrib by dash
0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'dpkg-divert', '--list']
0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'clean']
0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm', 'apt-get', 'clean']
0m22.2s DEBUG: Recording chroot state
0m23.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/shm']
0m23.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/shm']
0m23.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/console']
0m23.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/console']
0m23.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/ptmx']
0m23.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/ptmx']
0m23.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/pts']
0m23.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/dev/pts']
0m23.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/proc']
0m23.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm/proc']
0m23.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m23.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_3kku3vm']
0m23.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_3kku3vm
0m23.6s INFO: PASS: Upgrading between Debian distributions.
0m23.6s INFO: PASS: All tests.
0m23.6s INFO: piuparts run ends.
ret=0
End: 2023-07-28 20:11:35 GMT