Start: 2023-07-26 01:55:29 GMT [buster] Package: python3-treetime Source: python-treetime Version: 0.5.3-1 Installed-Size: 462 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-scipy, python3:any Description: inference of time stamped phylogenies and ancestral reconstruction (Python 3) Homepage: https://github.com/neherlab/treetime Description-md5: 08684c07bc46e3c9a45e193598335689 Section: python Priority: optional Filename: pool/main/p/python-treetime/python3-treetime_0.5.3-1_all.deb Size: 100064 MD5sum: 4bdd81859ce994af1459a04181394d1e SHA256: 82c02af167f2a4681d405f289dca35cbdab1797059dc194ad1fc68a0674078c2 [buster-next] Package: python3-treetime Source: python-treetime Version: 0.5.3-1 Installed-Size: 462 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-scipy, python3:any Description: inference of time stamped phylogenies and ancestral reconstruction (Python 3) Homepage: https://github.com/neherlab/treetime Description-md5: 08684c07bc46e3c9a45e193598335689 Section: python Priority: optional Filename: pool/main/p/python-treetime/python3-treetime_0.5.3-1_all.deb Size: 100064 MD5sum: 4bdd81859ce994af1459a04181394d1e SHA256: 82c02af167f2a4681d405f289dca35cbdab1797059dc194ad1fc68a0674078c2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt python3-treetime=0.5.3-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.8~202306121314~1.1.7-9-g57dfbde6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-debsums-errors --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz -d buster -d buster-next -B /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat --apt python3-treetime=0.5.3-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-23-amd64 #1 SMP Debian 5.10.179-2 (2023-07-14) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmps48paife 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmps48paife 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps48paife', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmps48paife', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/buster_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps48paife/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmps48paife/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmps48paife/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'update'] 0m3.3s DUMP: Hit:1 http://deb.debian.org/debian buster InRelease Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s DUMP: f6fc0f2636004ef589309651dfd778f4 - 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.0s INFO: Running scripts post_setup 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_dummy_users'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_dummy_users'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_forbid_home'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_minimize'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u1 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u1 install ok installed libc-bin libc-bin 2.28-10+deb10u1 install ok installed libc6:amd64 libc6 2.28-10+deb10u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u8 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u2 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u8 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u2 install ok installed libudev1:amd64 libudev1 241-7~deb10u8 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u2 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u2 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed tzdata tzdata 2021a-0+deb10u6 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u1 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/buster2next/reference-chroot-metadata.dat 0m5.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m5.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m5.9s INFO: Running scripts is_testable 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/is_testable_uninstallable'] 0m5.9s INFO: Running scripts pre_test 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_test_exceptions'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_test_exceptions'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_test_root_password'] 0m5.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_test_root_password'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'show', '--no-all-versions', 'python3-treetime'] 0m6.2s DUMP: Package: python3-treetime Source: python-treetime Version: 0.5.3-1 Installed-Size: 462 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-scipy, python3:any Description-en: inference of time stamped phylogenies and ancestral reconstruction (Python 3) TreeTime provides routines for ancestral sequence reconstruction and the maximum likelihoo inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence. . TreeTime aims at striking a compromise between sophisticated probabilistic models of evolution and fast heuristics. It implements GTR models of ancestral inference and branch length optimization, but takes the tree topology as given. To optimize the likelihood of time-scaled phylogenies, treetime uses an iterative approach that first infers ancestral sequences given the branch length of the tree, then optimizes the positions of unconstraine d nodes on the time axis, and then repeats this cycle. The only topology optimization are (optional) resolution of polytomies in a way that is most (approximately) consistent with the sampling time constraints on the tree. The package is designed to be used as a stand-alone tool or as a library used in larger phylogenetic analysis workflows. . Features * ancestral sequence reconstruction (marginal and joint maximum likelihood) * molecular clock tree inference (marginal and joint maximum likelihood) * inference of GTR models * rerooting to obtain best root-to-tip regression * auto-correlated relaxed molecular clock (with normal prior) . This package provides the Python 3 module. Description-md5: 08684c07bc46e3c9a45e193598335689 Homepage: https://github.com/neherlab/treetime Section: python Priority: optional Filename: pool/main/p/python-treetime/python3-treetime_0.5.3-1_all.deb Size: 100064 MD5sum: 4bdd81859ce994af1459a04181394d1e SHA256: 82c02af167f2a4681d405f289dca35cbdab1797059dc194ad1fc68a0674078c2 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'show', '--no-all-versions', 'python3-treetime'] 0m6.2s INFO: apt-cache knows about the following packages: python3-treetime 0m6.2s INFO: Running scripts pre_install 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_database-server'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_exceptions'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_extras'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy'] 0m6.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy', 'python3-treetime'] 0m6.3s DUMP: python3-treetime: Installed: (none) Candidate: 0.5.3-1 Version table: 0.5.3-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy', 'python3-treetime'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-y', 'install', 'python3-treetime'] 0m33.6s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: fonts-lyx libblas3 libexpat1 libfreetype6 libgfortran5 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmpdec2 libpng16-16 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libtiff5 libwebp6 libwebpdemux2 libwebpmux3 mime-support python-matplotlib-data python3 python3-biopython python3-cycler python3-dateutil python3-decorator python3-kiwisolver python3-matplotlib python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-tz python3.7 python3.7-minimal readline-common ttf-bitstream-vera Suggested packages: libjs-jquery-ui-docs liblcms2-utils python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-rdflib python3-renderpm python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt4 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gcc gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python-pandas-doc python-pil-doc python3-pil-dbg python3-setuptools python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python3.7-venv python3.7-doc binutils binfmt-support readline-doc Recommended packages: javascript-common bzip2 file xz-utils python-biopython-doc ncbi-blast+ python3-tk python3-numexpr python3-tables python3-bs4 python3-html5lib python3-lxml python3-olefile python3-renderpm g++ | c++-compiler The following NEW packages will be installed: fonts-lyx libblas3 libexpat1 libfreetype6 libgfortran5 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmpdec2 libpng16-16 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libtiff5 libwebp6 libwebpdemux2 libwebpmux3 mime-support python-matplotlib-data python3 python3-biopython python3-cycler python3-dateutil python3-decorator python3-kiwisolver python3-matplotlib python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-treetime python3-tz python3.7 python3.7-minimal readline-common ttf-bitstream-vera 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 42.6 MB of archives. After this operation, 173 MB of additional disk space will be used. 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libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get:12 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get:13 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get:14 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get:15 http://deb.debian.org/debian buster/main amd64 fonts-lyx all 2.3.2-1 [199 kB] Get:16 http://deb.debian.org/debian buster/main amd64 libquadmath0 amd64 8.3.0-6 [133 kB] Get:17 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get:18 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:19 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get:20 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u3 [380 kB] Get:21 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:22 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:23 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get:24 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get:25 http://deb.debian.org/debian buster/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:26 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:27 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:28 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get:29 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u4 [271 kB] Get:30 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get:31 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get:32 http://deb.debian.org/debian buster/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:33 http://deb.debian.org/debian buster/main amd64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get:34 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get:35 http://deb.debian.org/debian buster/main amd64 python3-numpy amd64 1:1.16.2-1 [2119 kB] Get:36 http://deb.debian.org/debian buster/main amd64 python3-reportlab-accel amd64 3.5.13-1+deb10u1 [35.3 kB] Get:37 http://deb.debian.org/debian buster/main amd64 python3-pil amd64 5.4.1-2+deb10u3 [395 kB] Get:38 http://deb.debian.org/debian buster/main amd64 python3-reportlab all 3.5.13-1+deb10u1 [541 kB] Get:39 http://deb.debian.org/debian buster/main amd64 python3-biopython amd64 1.73+dfsg-1 [1287 kB] Get:40 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get:41 http://deb.debian.org/debian buster/main amd64 python3-cycler all 0.10.0-1 [7556 B] Get:42 http://deb.debian.org/debian buster/main amd64 python3-dateutil all 2.7.3-3 [64.5 kB] Get:43 http://deb.debian.org/debian buster/main amd64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get:44 http://deb.debian.org/debian buster/main amd64 python3-kiwisolver amd64 1.0.1-2+b1 [65.4 kB] Get:45 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:46 http://deb.debian.org/debian buster/main amd64 python3-matplotlib amd64 3.0.2-2 [5353 kB] Get:47 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get:48 http://deb.debian.org/debian buster/main amd64 python3-pandas-lib amd64 0.23.3+dfsg-3 [3475 kB] Get:49 http://deb.debian.org/debian buster/main amd64 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get:50 http://deb.debian.org/debian buster/main amd64 python3-scipy amd64 1.1.0-7 [10.0 MB] Get:51 http://deb.debian.org/debian buster/main amd64 python3-treetime all 0.5.3-1 [100 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.6 MB in 6s (6869 kB/s) Selecting previously unselected package libssl1.1:amd64. 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Unpacking python3-pandas (0.23.3+dfsg-3) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../36-python3-scipy_1.1.0-7_amd64.deb ... Unpacking python3-scipy (1.1.0-7) ... Selecting previously unselected package python3-treetime. Preparing to unpack .../37-python3-treetime_0.5.3-1_all.deb ... Unpacking python3-treetime (0.5.3-1) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.62) ... Setting up fonts-lyx (2.3.2-1) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libquadmath0:amd64 (8.3.0-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u4) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up readline-common (7.0-5) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u3) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up python3 (3.7.3-1) ... Setting up python3-tz (2019.1-1) ... Setting up python3-six (1.12.0-1) ... Setting up python3-pil:amd64 (5.4.1-2+deb10u3) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Setting up python3-reportlab (3.5.13-1+deb10u1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python3-biopython (1.73+dfsg-1) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-scipy (1.1.0-7) ... Setting up python3-pandas-lib (0.23.3+dfsg-3) ... Setting up python3-pandas (0.23.3+dfsg-3) ... Setting up python3-treetime (0.5.3-1) ... Processing triggers for libc-bin (2.28-10+deb10u1) ... 0m33.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-y', 'install', 'python3-treetime'] 0m33.6s INFO: Running scripts post_install 0m33.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_install_exceptions'] 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_install_exceptions'] 0m33.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m34.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m34.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmps48paife to buster-next 0m34.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ buster main deb http://security.debian.org buster/updates main deb http://deb.debian.org/debian/ buster-updates main deb http://deb.debian.org/debian/ buster-proposed-updates main 0m34.3s INFO: Running scripts pre_distupgrade 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_exceptions'] 0m34.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_exceptions'] 0m34.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'update'] 0m36.5s DUMP: Get:1 http://security.debian.org buster/updates InRelease [34.8 kB] Hit:2 http://deb.debian.org/debian buster InRelease Get:3 http://security.debian.org buster/updates/main amd64 Packages [543 kB] Get:4 http://security.debian.org buster/updates/main Translation-en [294 kB] Get:5 http://deb.debian.org/debian buster-updates InRelease [56.6 kB] Get:6 http://deb.debian.org/debian buster-proposed-updates InRelease [59.2 kB] Get:7 http://deb.debian.org/debian buster-updates/main amd64 Packages [8788 B] Get:8 http://deb.debian.org/debian buster-updates/main Translation-en [6915 B] Get:9 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages [728 B] Get:10 http://deb.debian.org/debian buster-proposed-updates/main Translation-en [859 B] Fetched 1005 kB in 1s (1207 kB/s) Reading package lists... 0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'update'] 0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-yf', 'dist-upgrade'] 0m43.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debian-archive-keyring libbz2-1.0 libc-bin libc6 libexpat1 libgnutls30 libjs-jquery-ui libncursesw6 libpython3.7-minimal libpython3.7-stdlib libsqlite3-0 libssl1.1 libsystemd0 libtasn1-6 libtiff5 libtinfo6 libudev1 libwebp6 libwebpdemux2 libwebpmux3 ncurses-base ncurses-bin python3.7 python3.7-minimal tzdata zlib1g 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.6 MB of archives. After this operation, 16.4 kB of additional disk space will be used. Get:1 http://security.debian.org buster/updates/main amd64 ncurses-bin amd64 6.1+20181013-2+deb10u3 [407 kB] Get:2 http://security.debian.org buster/updates/main amd64 libc6 amd64 2.28-10+deb10u2 [2869 kB] Get:3 http://security.debian.org buster/updates/main amd64 libc-bin amd64 2.28-10+deb10u2 [793 kB] Get:4 http://security.debian.org buster/updates/main amd64 ncurses-base all 6.1+20181013-2+deb10u3 [259 kB] Get:5 http://security.debian.org buster/updates/main amd64 libsystemd0 amd64 241-7~deb10u10 [332 kB] Get:6 http://security.debian.org buster/updates/main amd64 libssl1.1 amd64 1.1.1n-0+deb10u5 [1551 kB] Get:7 http://security.debian.org buster/updates/main amd64 python3.7 amd64 3.7.3-2+deb10u5 [330 kB] Get:8 http://security.debian.org buster/updates/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u5 [1734 kB] Get:9 http://security.debian.org buster/updates/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u5 [1728 kB] Get:10 http://security.debian.org buster/updates/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u5 [589 kB] Get:11 http://security.debian.org buster/updates/main amd64 libbz2-1.0 amd64 1.0.6-9.2~deb10u2 [45.4 kB] Get:12 http://security.debian.org buster/updates/main amd64 libtinfo6 amd64 6.1+20181013-2+deb10u3 [326 kB] Get:13 http://security.debian.org buster/updates/main amd64 libncursesw6 amd64 6.1+20181013-2+deb10u3 [132 kB] Get:14 http://security.debian.org buster/updates/main amd64 libsqlite3-0 amd64 3.27.2-3+deb10u2 [641 kB] Get:15 http://security.debian.org buster/updates/main amd64 libexpat1 amd64 2.2.6-2+deb10u6 [108 kB] Get:16 http://security.debian.org buster/updates/main amd64 zlib1g amd64 1:1.2.11.dfsg-1+deb10u2 [90.9 kB] Get:17 http://security.debian.org buster/updates/main amd64 debian-archive-keyring all 2019.1+deb10u2 [110 kB] Get:18 http://security.debian.org buster/updates/main amd64 libudev1 amd64 241-7~deb10u10 [151 kB] Get:19 http://security.debian.org buster/updates/main amd64 libtasn1-6 amd64 4.13-3+deb10u1 [52.0 kB] Get:20 http://security.debian.org buster/updates/main amd64 libgnutls30 amd64 3.6.7-4+deb10u10 [1126 kB] Get:21 http://security.debian.org buster/updates/main amd64 tzdata all 2021a-0+deb10u11 [267 kB] Get:22 http://security.debian.org buster/updates/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5+deb10u1 [232 kB] Get:23 http://security.debian.org buster/updates/main amd64 libwebp6 amd64 0.6.1-2+deb10u2 [262 kB] Get:24 http://security.debian.org buster/updates/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u7 [273 kB] Get:25 http://security.debian.org buster/updates/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u2 [87.7 kB] Get:26 http://security.debian.org buster/updates/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u2 [97.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.6 MB in 0s (50.9 MB/s) (Reading database ... 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Unpacking zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) over (1:1.2.11.dfsg-1+deb10u1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-1+deb10u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11695 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2019.1+deb10u2_all.deb ... Unpacking debian-archive-keyring (2019.1+deb10u2) over (2019.1+deb10u1) ... Setting up debian-archive-keyring (2019.1+deb10u2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11701 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.7-4+deb10u10_amd64.deb ... Unpacking libgnutls30:amd64 (3.6.7-4+deb10u10) over (3.6.7-4+deb10u8) ... Setting up libgnutls30:amd64 (3.6.7-4+deb10u10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11701 files and directories currently installed.) Preparing to unpack .../0-tzdata_2021a-0+deb10u11_all.deb ... Unpacking tzdata (2021a-0+deb10u11) over (2021a-0+deb10u6) ... Preparing to unpack .../1-libjs-jquery-ui_1.12.1+dfsg-5+deb10u1_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-5+deb10u1) over (1.12.1+dfsg-5) ... Preparing to unpack .../2-libwebp6_0.6.1-2+deb10u2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2+deb10u2) over (0.6.1-2+deb10u1) ... Preparing to unpack .../3-libtiff5_4.1.0+git191117-2~deb10u7_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2~deb10u7) over (4.1.0+git191117-2~deb10u4) ... Preparing to unpack .../4-libwebpdemux2_0.6.1-2+deb10u2_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2+deb10u2) over (0.6.1-2+deb10u1) ... Preparing to unpack .../5-libwebpmux3_0.6.1-2+deb10u2_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2+deb10u2) over (0.6.1-2+deb10u1) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u6) ... Setting up libssl1.1:amd64 (1.1.1n-0+deb10u5) ... Setting up libsqlite3-0:amd64 (3.27.2-3+deb10u2) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u5) ... Setting up tzdata (2021a-0+deb10u11) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 26 01:56:12 UTC 2023. Universal Time is now: Wed Jul 26 01:56:12 UTC 2023. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjs-jquery-ui (1.12.1+dfsg-5+deb10u1) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u2) ... Setting up python3.7-minimal (3.7.3-2+deb10u5) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u7) ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u2) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u5) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u2) ... Setting up python3.7 (3.7.3-2+deb10u5) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... Processing triggers for mime-support (3.62) ... 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-yf', 'dist-upgrade'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m44.0s DUMP: b1ad30c3a60b65c30e3552aadf87ddc4 - 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'show', '--no-all-versions', 'python3-treetime'] 0m44.3s DUMP: Package: python3-treetime Source: python-treetime Version: 0.5.3-1 Installed-Size: 462 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-scipy, python3:any Description-en: inference of time stamped phylogenies and ancestral reconstruction (Python 3) TreeTime provides routines for ancestral sequence reconstruction and the maximum likelihoo inference of molecular-clock phylogenies, i.e., a tree where all branches are scaled such that the locations of terminal nodes correspond to their sampling times and internal nodes are placed at the most likely time of divergence. . TreeTime aims at striking a compromise between sophisticated probabilistic models of evolution and fast heuristics. It implements GTR models of ancestral inference and branch length optimization, but takes the tree topology as given. To optimize the likelihood of time-scaled phylogenies, treetime uses an iterative approach that first infers ancestral sequences given the branch length of the tree, then optimizes the positions of unconstraine d nodes on the time axis, and then repeats this cycle. The only topology optimization are (optional) resolution of polytomies in a way that is most (approximately) consistent with the sampling time constraints on the tree. The package is designed to be used as a stand-alone tool or as a library used in larger phylogenetic analysis workflows. . Features * ancestral sequence reconstruction (marginal and joint maximum likelihood) * molecular clock tree inference (marginal and joint maximum likelihood) * inference of GTR models * rerooting to obtain best root-to-tip regression * auto-correlated relaxed molecular clock (with normal prior) . This package provides the Python 3 module. Description-md5: 08684c07bc46e3c9a45e193598335689 Homepage: https://github.com/neherlab/treetime Section: python Priority: optional Filename: pool/main/p/python-treetime/python3-treetime_0.5.3-1_all.deb Size: 100064 MD5sum: 4bdd81859ce994af1459a04181394d1e SHA256: 82c02af167f2a4681d405f289dca35cbdab1797059dc194ad1fc68a0674078c2 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'show', '--no-all-versions', 'python3-treetime'] 0m44.3s INFO: apt-cache knows about the following packages: python3-treetime 0m44.3s INFO: Running scripts pre_install 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_database-server'] 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_database-server'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_exceptions'] 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_exceptions'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_extras'] 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_extras'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy'] 0m44.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy', 'python3-treetime'] 0m44.5s DUMP: python3-treetime: Installed: 0.5.3-1 Candidate: 0.5.3-1 Version table: *** 0.5.3-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy', 'python3-treetime'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-y', 'install', 'python3-treetime'] 0m44.9s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-treetime is already the newest version (0.5.3-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-y', 'install', 'python3-treetime'] 0m44.9s INFO: Running scripts post_install 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_install_exceptions'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_install_exceptions'] 0m44.9s INFO: Running scripts post_distupgrade 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_exceptions'] 0m44.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_zz_backports'] 0m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_distupgrade_zz_backports'] 0m45.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m45.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m45.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m46.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m46.2s INFO: Running scripts pre_install 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_database-server'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_database-server'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_exceptions'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_exceptions'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_extras'] 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_extras'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy'] 0m46.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian buster-proposed-updates/main amd64 Packages release v=10-updates,o=Debian,a=oldoldstable-proposed-updates,n=buster-proposed-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian buster-updates/main amd64 Packages release o=Debian,a=oldoldstable-updates,n=buster-updates,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://security.debian.org buster/updates/main amd64 Packages release v=10,o=Debian,a=oldoldstable,n=buster,l=Debian-Security,c=main,b=amd64 origin security.debian.org 500 http://deb.debian.org/debian buster/main amd64 Packages release v=10.13,o=Debian,a=oldoldstable,n=buster,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy', 'python3-treetime'] 0m46.4s DUMP: python3-treetime: Installed: 0.5.3-1 Candidate: 0.5.3-1 Version table: *** 0.5.3-1 500 500 http://deb.debian.org/debian buster/main amd64 Packages 100 /var/lib/dpkg/status 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-cache', 'policy', 'python3-treetime'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-y', 'install', 'python3-treetime=0.5.3-1'] 0m46.9s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-treetime is already the newest version (0.5.3-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', '-y', 'install', 'python3-treetime=0.5.3-1'] 0m46.9s INFO: Running scripts post_install 0m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_install_exceptions'] 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_install_exceptions'] 0m46.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m47.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m48.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps48paife', '-ac', '--ignore-obsolete'] 0m49.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmps48paife', '-ac', '--ignore-obsolete'] 0m49.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m49.8s DUMP: 0.15.6 0m49.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m49.8s INFO: Running adequate version 0.15.6 now. 0m49.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps48paife', 'python3-treetime'] 0m49.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmps48paife', 'python3-treetime'] 0m49.9s INFO: Running scripts pre_remove 0m49.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m50.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m51.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m51.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m51.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m51.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_exceptions'] 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/pre_remove_exceptions'] 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m51.8s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.8.2.3 install ok installed base-files base-files 10.3+deb10u13 install ok installed base-passwd base-passwd 3.5.46 install ok installed bash bash 5.0-4 install ok installed bsdutils bsdutils 1:2.33.1-0.1 install ok installed coreutils coreutils 8.30-3 install ok installed dash dash 0.5.10.2-5 install ok installed debconf debconf 1.5.71+deb10u1 install ok installed debian-archive-keyring debian-archive-keyring 2019.1+deb10u2 install ok installed debianutils debianutils 4.8.6.1 install ok installed diffutils diffutils 1:3.7-3 install ok installed dpkg dpkg 1.19.8 install ok installed e2fsprogs e2fsprogs 1.44.5-1+deb10u3 install ok installed fdisk fdisk 2.33.1-0.1 install ok installed findutils findutils 4.6.0+git+20190209-2 install ok installed fonts-lyx fonts-lyx 2.3.2-1 install ok installed gcc-8-base:amd64 gcc-8-base 8.3.0-6 install ok installed gpgv gpgv 2.2.12-1+deb10u2 install ok installed grep grep 3.3-1 install ok installed gzip gzip 1.9-3+deb10u1 install ok installed hostname hostname 3.21 install ok installed init-system-helpers init-system-helpers 1.56+nmu1 install ok installed libacl1:amd64 libacl1 2.2.53-4 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.8.2.3 install ok installed libattr1:amd64 libattr1 1:2.4.48-4 install ok installed libaudit-common libaudit-common 1:2.8.4-3 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-3 install ok installed libblas3:amd64 libblas3 3.8.0-2 install ok installed libblkid1:amd64 libblkid1 2.33.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9.2~deb10u2 install ok installed libc-bin libc-bin 2.28-10+deb10u2 install ok installed libc6:amd64 libc6 2.28-10+deb10u2 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2 install ok installed libcom-err2:amd64 libcom-err2 1.44.5-1+deb10u3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.5 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.249 install ok installed libexpat1:amd64 libexpat1 2.2.6-2+deb10u6 install ok installed libext2fs2:amd64 libext2fs2 1.44.5-1+deb10u3 install ok installed libfdisk1:amd64 libfdisk1 2.33.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-9 install ok installed libfreetype6:amd64 libfreetype6 2.9.1-3+deb10u3 install ok installed libgcc1:amd64 libgcc1 1:8.3.0-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.4-5+deb10u1 install ok installed libgfortran5:amd64 libgfortran5 8.3.0-6 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-4+deb10u1 install ok installed libgnutls30:amd64 libgnutls30 3.6.7-4+deb10u10 install ok installed libgpg-error0:amd64 libgpg-error0 1.35-1 install ok installed libhogweed4:amd64 libhogweed4 3.4.1-1+deb10u1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1+deb10u1 install ok installed libimagequant0:amd64 libimagequant0 2.12.2-1.1 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+deb10u1 install ok installed libjs-jquery libjs-jquery 3.3.1~dfsg-3+deb10u1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.12.1+dfsg-5+deb10u1 install ok installed liblapack3:amd64 liblapack3 3.8.0-2 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed liblz4-1:amd64 liblz4-1 1.8.3-1+deb10u1 install ok installed liblzma5:amd64 liblzma5 5.2.4-1+deb10u1 install ok installed libmount1:amd64 libmount1 2.33.1-0.1 install ok installed libmpdec2:amd64 libmpdec2 2.4.2-2 install ok installed libncursesw6:amd64 libncursesw6 6.1+20181013-2+deb10u3 install ok installed libnettle6:amd64 libnettle6 3.4.1-1+deb10u1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.15-2+deb10u1 install ok installed libpam-modules:amd64 libpam-modules 1.3.1-5 install ok installed libpam-modules-bin libpam-modules-bin 1.3.1-5 install ok installed libpam-runtime libpam-runtime 1.3.1-5 install ok installed libpam0g:amd64 libpam0g 1.3.1-5 install ok installed libpcre3:amd64 libpcre3 2:8.39-12 install ok installed libpng16-16:amd64 libpng16-16 1.6.36-6 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.7.3-1 install ok installed libpython3.7-minimal:amd64 libpython3.7-minimal 3.7.3-2+deb10u5 install ok installed libpython3.7-stdlib:amd64 libpython3.7-stdlib 3.7.3-2+deb10u5 install ok installed libquadmath0:amd64 libquadmath0 8.3.0-6 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-4 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-2 install ok installed libsemanage1:amd64 libsemanage1 2.8-2 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.33.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.27.2-3+deb10u2 install ok installed libss2:amd64 libss2 1.44.5-1+deb10u3 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb10u5 install ok installed libstdc++6:amd64 libstdc++6 8.3.0-6 install ok installed libsystemd0:amd64 libsystemd0 241-7~deb10u10 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3+deb10u1 install ok installed libtiff5:amd64 libtiff5 4.1.0+git191117-2~deb10u7 install ok installed libtinfo6:amd64 libtinfo6 6.1+20181013-2+deb10u3 install ok installed libudev1:amd64 libudev1 241-7~deb10u10 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.33.1-0.1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2+deb10u2 install ok installed libwebpdemux2:amd64 libwebpdemux2 0.6.1-2+deb10u2 install ok installed libwebpmux3:amd64 libwebpmux3 0.6.1-2+deb10u2 install ok installed libzstd1:amd64 libzstd1 1.3.8+dfsg-3+deb10u2 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mime-support mime-support 3.62 install ok installed mount mount 2.33.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20181013-2+deb10u3 install ok installed ncurses-bin ncurses-bin 6.1+20181013-2+deb10u3 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.28.1-6+deb10u1 install ok installed python-matplotlib-data python-matplotlib-data 3.0.2-2 install ok installed python3 python3 3.7.3-1 install ok installed python3-biopython python3-biopython 1.73+dfsg-1 install ok installed python3-cycler python3-cycler 0.10.0-1 install ok installed python3-dateutil python3-dateutil 2.7.3-3 install ok installed python3-decorator python3-decorator 4.3.0-1.1 install ok installed python3-kiwisolver python3-kiwisolver 1.0.1-2+b1 install ok installed python3-matplotlib python3-matplotlib 3.0.2-2 install ok installed python3-minimal python3-minimal 3.7.3-1 install ok installed python3-numpy python3-numpy 1:1.16.2-1 install ok installed python3-pandas python3-pandas 0.23.3+dfsg-3 install ok installed python3-pandas-lib python3-pandas-lib 0.23.3+dfsg-3 install ok installed python3-pil:amd64 python3-pil 5.4.1-2+deb10u3 install ok installed python3-pkg-resources python3-pkg-resources 40.8.0-1 install ok installed python3-pyparsing python3-pyparsing 2.2.0+dfsg1-2 install ok installed python3-reportlab python3-reportlab 3.5.13-1+deb10u1 install ok installed python3-reportlab-accel:amd64 python3-reportlab-accel 3.5.13-1+deb10u1 install ok installed python3-scipy python3-scipy 1.1.0-7 install ok installed python3-six python3-six 1.12.0-1 install ok installed python3-treetime python3-treetime 0.5.3-1 install ok installed python3-tz python3-tz 2019.1-1 install ok installed python3.7 python3.7 3.7.3-2+deb10u5 install ok installed python3.7-minimal python3.7-minimal 3.7.3-2+deb10u5 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.93-8 install ok installed tar tar 1.30+dfsg-6 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8 install ok installed tzdata tzdata 2021a-0+deb10u11 install ok installed util-linux util-linux 2.33.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1+deb10u2 0m51.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m51.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'remove', 'fonts-lyx', 'libblas3:amd64', 'libexpat1:amd64', 'libfreetype6:amd64', 'libgfortran5:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-biopython', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-kiwisolver', 'python3-matplotlib', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3.7', 'python3.7-minimal', 'readline-common', 'ttf-bitstream-vera', 'python3-treetime'] 0m55.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fonts-lyx libblas3 libexpat1 libfreetype6 libgfortran5 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmpdec2 libpng16-16 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libquadmath0 libreadline7 libsqlite3-0 libssl1.1 libtiff5 libwebp6 libwebpdemux2 libwebpmux3 mime-support python-matplotlib-data python3 python3-biopython python3-cycler python3-dateutil python3-decorator python3-kiwisolver python3-matplotlib python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-pyparsing python3-reportlab python3-reportlab-accel python3-scipy python3-six python3-treetime python3-tz python3.7 python3.7-minimal readline-common ttf-bitstream-vera 0 upgraded, 0 newly installed, 51 to remove and 0 not upgraded. After this operation, 173 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11704 files and directories currently installed.) Removing python3-treetime (0.5.3-1) ... Removing python3-matplotlib (3.0.2-2) ... Removing python-matplotlib-data (3.0.2-2) ... Removing fonts-lyx (2.3.2-1) ... Removing python3-scipy (1.1.0-7) ... Removing python3-biopython (1.73+dfsg-1) ... Removing python3-pandas (0.23.3+dfsg-3) ... Removing python3-pandas-lib (0.23.3+dfsg-3) ... Removing python3-numpy (1:1.16.2-1) ... Removing liblapack3:amd64 (3.8.0-2) ... Removing libblas3:amd64 (3.8.0-2) ... Removing python3-reportlab (3.5.13-1+deb10u1) ... Removing python3-reportlab-accel:amd64 (3.5.13-1+deb10u1) ... Removing python3-dateutil (2.7.3-3) ... Removing python3-cycler (0.10.0-1) ... Removing python3-six (1.12.0-1) ... Removing python3-pil:amd64 (5.4.1-2+deb10u3) ... Removing python3-tz (2019.1-1) ... Removing libfreetype6:amd64 (2.9.1-3+deb10u3) ... Removing libgfortran5:amd64 (8.3.0-6) ... Removing libimagequant0:amd64 (2.12.2-1.1) ... Removing libtiff5:amd64 (4.1.0+git191117-2~deb10u7) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Removing libjs-jquery-ui (1.12.1+dfsg-5+deb10u1) ... Removing libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing libpng16-16:amd64 (1.6.36-6) ... Removing libquadmath0:amd64 (8.3.0-6) ... Removing libwebpmux3:amd64 (0.6.1-2+deb10u2) ... Removing libwebpdemux2:amd64 (0.6.1-2+deb10u2) ... Removing libwebp6:amd64 (0.6.1-2+deb10u2) ... Removing python3-decorator (4.3.0-1.1) ... Removing python3-kiwisolver (1.0.1-2+b1) ... Removing python3-pkg-resources (40.8.0-1) ... Removing python3-pyparsing (2.2.0+dfsg1-2) ... Removing ttf-bitstream-vera (1.10-8) ... Removing python3 (3.7.3-1) ... Removing python3.7 (3.7.3-2+deb10u5) ... Removing python3-minimal (3.7.3-1) ... Removing python3.7-minimal (3.7.3-2+deb10u5) ... Removing libexpat1:amd64 (2.2.6-2+deb10u6) ... Removing libpython3-stdlib:amd64 (3.7.3-1) ... Removing libpython3.7-stdlib:amd64 (3.7.3-2+deb10u5) ... find: '/usr/lib/python3': No such file or directory Removing libmpdec2:amd64 (2.4.2-2) ... Removing libpython3.7-minimal:amd64 (3.7.3-2+deb10u5) ... find: '/usr/lib/python3': No such file or directory Removing libreadline7:amd64 (7.0-5) ... Removing libsqlite3-0:amd64 (3.27.2-3+deb10u2) ... Removing libssl1.1:amd64 (1.1.1n-0+deb10u5) ... Removing mime-support (3.62) ... Removing readline-common (7.0-5) ... Processing triggers for libc-bin (2.28-10+deb10u2) ... 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'remove', 'fonts-lyx', 'libblas3:amd64', 'libexpat1:amd64', 'libfreetype6:amd64', 'libgfortran5:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-biopython', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-kiwisolver', 'python3-matplotlib', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3.7', 'python3.7-minimal', 'readline-common', 'ttf-bitstream-vera', 'python3-treetime'] 0m55.7s INFO: Running scripts post_remove 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_remove_exceptions'] 0m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_remove_exceptions'] 0m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--purge', 'fonts-lyx', 'libblas3:amd64', 'libexpat1:amd64', 'libfreetype6:amd64', 'libgfortran5:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-biopython', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-kiwisolver', 'python3-matplotlib', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3.7', 'python3.7-minimal', 'readline-common', 'ttf-bitstream-vera'] 0m55.9s DUMP: dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-jquery which isn't installed (Reading database ... 6476 files and directories currently installed.) Purging configuration files for libjs-jquery-ui (1.12.1+dfsg-5+deb10u1) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libmpdec2 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.7-minimal:amd64 (3.7.3-2+deb10u5) ... dpkg: warning: ignoring request to remove libpython3.7-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1n-0+deb10u5) ... dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed Purging configuration files for mime-support (3.62) ... Purging configuration files for python-matplotlib-data (3.0.2-2) ... Purging configuration files for python3 (3.7.3-1) ... dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-reportlab-accel which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3.7 which isn't installed Purging configuration files for python3.7-minimal (3.7.3-2+deb10u5) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--purge', 'fonts-lyx', 'libblas3:amd64', 'libexpat1:amd64', 'libfreetype6:amd64', 'libgfortran5:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libmpdec2:amd64', 'libpng16-16:amd64', 'libpython3-stdlib:amd64', 'libpython3.7-minimal:amd64', 'libpython3.7-stdlib:amd64', 'libquadmath0:amd64', 'libreadline7:amd64', 'libsqlite3-0:amd64', 'libssl1.1:amd64', 'libtiff5:amd64', 'libwebp6:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'mime-support', 'python-matplotlib-data', 'python3', 'python3-biopython', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-kiwisolver', 'python3-matplotlib', 'python3-minimal', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-reportlab', 'python3-reportlab-accel:amd64', 'python3-scipy', 'python3-six', 'python3-tz', 'python3.7', 'python3.7-minimal', 'readline-common', 'ttf-bitstream-vera'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--purge', 'python3-treetime'] 0m55.9s DUMP: dpkg: warning: ignoring request to remove python3-treetime which isn't installed 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--purge', 'python3-treetime'] 0m55.9s INFO: Running scripts post_purge 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_purge_exceptions'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_purge_exceptions'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--purge', '--pending'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--purge', '--pending'] 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--remove', '--pending'] 0m55.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg', '--remove', '--pending'] 0m55.9s INFO: Running scripts post_test 0m55.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_test_exceptions'] 0m56.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'tmp/scripts/post_test_exceptions'] 0m56.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m56.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg-divert', '--list'] 0m56.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'dpkg-divert', '--list'] 0m56.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'clean'] 0m56.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmps48paife', 'apt-get', 'clean'] 0m56.3s DEBUG: Recording chroot state 0m57.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/shm'] 0m57.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/shm'] 0m57.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/console'] 0m57.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/console'] 0m57.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/ptmx'] 0m57.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/ptmx'] 0m57.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/pts'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/dev/pts'] 0m57.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/proc'] 0m57.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmps48paife/proc'] 0m57.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m57.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmps48paife'] 0m57.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmps48paife 0m57.4s INFO: PASS: Upgrading between Debian distributions. 0m57.4s INFO: PASS: All tests. 0m57.4s INFO: piuparts run ends. ret=0 End: 2023-07-26 01:56:27 GMT